AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57167

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57167.t1 MTR_6g048300 95.184 353 8 3 1 348 1 349 0.0 665
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57167.t1 AT5G24020 80.368 326 39 2 24 348 25 326 3.21e-176 492

Find 130 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGAGTGTGATGGGATT+AGG 0.203845 6.3:+43408978 MS.gene57167:CDS
GCCTCCTACTTTGGCTGGTT+TGG 0.227893 6.3:+43409171 MS.gene57167:CDS
CGAAGATATGATGTCGGTTT+TGG 0.228805 6.3:+43409048 MS.gene57167:CDS
CGCCGGATATAACTGCATTA+AGG 0.237827 6.3:+43408933 MS.gene57167:CDS
GGGTTTGGGTTTGGGGAATG+TGG 0.249661 6.3:-43408333 None:intergenic
CCAATAGGTAATTTAGATCT+AGG 0.260628 6.3:-43408686 None:intergenic
CCTAGATCTAAATTACCTAT+TGG 0.278293 6.3:+43408686 MS.gene57167:CDS
TGGGGTTTCGCCGGAGAGTT+GGG 0.291059 6.3:-43408399 None:intergenic
TTGAGATTGGTGGTGGTGCC+GGG 0.299756 6.3:-43408272 None:intergenic
TCTAAATTACCTATTGGATT+TGG 0.301556 6.3:+43408692 MS.gene57167:CDS
AACTCCAGTTCCACTGGTTC+TGG 0.323824 6.3:+43408815 MS.gene57167:CDS
GTTGGAGTGTGATGGGATTA+GGG 0.327318 6.3:+43408979 MS.gene57167:CDS
GGGTTTGGGGAATGTGGGAG+AGG 0.332273 6.3:-43408327 None:intergenic
TTTGAGATTGGTGGTGGTGC+CGG 0.343813 6.3:-43408273 None:intergenic
CGGAGGATAGTGAGGTTATA+AGG 0.346345 6.3:+43409113 MS.gene57167:CDS
CGCCGGAGAGTTGGGGTTTG+CGG 0.359616 6.3:-43408391 None:intergenic
GGATAGTATGCAAGCTGTTA+TGG 0.362457 6.3:+43409228 MS.gene57167:CDS
GTGGGGTTTCGCCGGAGAGT+TGG 0.366229 6.3:-43408400 None:intergenic
ACTGGAACCAATGGTGGTTC+TGG 0.373685 6.3:+43408788 MS.gene57167:CDS
GCTAGGACGGATATGATTAA+AGG 0.384292 6.3:+43409025 MS.gene57167:CDS
TTTGAATAAGCCTCCTACTT+TGG 0.386067 6.3:+43409162 MS.gene57167:CDS
TGCCCAGCGGGGATCGATGC+AGG 0.386578 6.3:+43408863 MS.gene57167:CDS
AATAAGCCTCCTACTTTGGC+TGG 0.388357 6.3:+43409166 MS.gene57167:CDS
GGTTTGGGTTTGGGGAATGT+GGG 0.391660 6.3:-43408332 None:intergenic
ATATTAAGATGATAGTGAAT+AGG 0.397168 6.3:+43409002 MS.gene57167:CDS
CAACAAAATCCCTTCTTCAA+TGG 0.399116 6.3:+43408366 MS.gene57167:CDS
GGAGATAAAACCGGTGGAAA+TGG 0.404981 6.3:+43408758 MS.gene57167:CDS
ATCAAAACCGCTTCATTAGC+AGG 0.415640 6.3:-43408905 None:intergenic
CGACGACGGAGAAGCCTAAA+CGG 0.416599 6.3:-43408499 None:intergenic
GCCGTTGCTTGGTGTTATAC+CGG 0.418035 6.3:+43409093 MS.gene57167:CDS
TATTAAGATGATAGTGAATA+GGG 0.421269 6.3:+43409003 MS.gene57167:CDS
AGGGAAGTGGGATTTGAGAT+TGG 0.424623 6.3:-43408285 None:intergenic
AAATTACCTATTGGATTTGG+TGG 0.424983 6.3:+43408695 MS.gene57167:CDS
TTCCACTGGTTCTGGCTGTC+CGG 0.425939 6.3:+43408823 MS.gene57167:CDS
GGATGGAGATGGGTGATTGA+AGG 0.430261 6.3:-43408305 None:intergenic
ACAGCCAGAACCAGTGGAAC+TGG 0.431566 6.3:-43408819 None:intergenic
CAAGACCTAGTAAAAGGTCT+AGG 0.433285 6.3:-43408550 None:intergenic
GCCGGATATAACTGCATTAA+GGG 0.435899 6.3:+43408934 MS.gene57167:CDS
TTGGATGTGCAAGAGATGTT+GGG 0.436831 6.3:+43409067 MS.gene57167:CDS
TCCCCGCTGGGCAATCGATC+AGG 0.438912 6.3:-43408853 None:intergenic
GGTTCCAACTCCAGTTCCAC+TGG 0.439282 6.3:+43408809 MS.gene57167:CDS
GGTTTGGGGAATGTGGGAGA+GGG 0.445213 6.3:-43408326 None:intergenic
GTGGGATTTGAGATTGGTGG+TGG 0.456536 6.3:-43408279 None:intergenic
AAAACCGGTGGAAATGGAAA+TGG 0.458507 6.3:+43408764 MS.gene57167:CDS
GGTGGAAATGGAAATGGAAC+TGG 0.459176 6.3:+43408770 MS.gene57167:CDS
TCCCTTAATGCAGTTATATC+CGG 0.461447 6.3:-43408935 None:intergenic
GATGGAGATGGGTGATTGAA+GGG 0.461891 6.3:-43408304 None:intergenic
TGCTTGGAGACTTGTGGAGC+AGG 0.462222 6.3:+43409207 MS.gene57167:CDS
AACCCTGCATCGATCCCCGC+TGG 0.463979 6.3:-43408866 None:intergenic
ATCCTGATCGATTGCCCAGC+GGG 0.465074 6.3:+43408851 MS.gene57167:CDS
GTAGTAGTCACATCCGGAAA+AGG 0.466734 6.3:+43408428 MS.gene57167:CDS
ATGTGGGAGAGGGATGGAGA+TGG 0.467686 6.3:-43408316 None:intergenic
TGTGGGAGAGGGATGGAGAT+GGG 0.471520 6.3:-43408315 None:intergenic
CGGGATTGTTGGAGTGTGAT+GGG 0.471806 6.3:+43408972 MS.gene57167:CDS
CGCTTCATTAGCAGGCGTAA+TGG 0.474476 6.3:-43408897 None:intergenic
TTGTCGACTCGATCAAGCTT+TGG 0.474531 6.3:+43408616 MS.gene57167:CDS
TGGTGCCGGGGTGGTTGTAG+AGG 0.476793 6.3:-43408259 None:intergenic
ATGGGTGATTGAAGGGAAGT+GGG 0.477183 6.3:-43408297 None:intergenic
TTTGGATGTGCAAGAGATGT+TGG 0.492861 6.3:+43409066 MS.gene57167:CDS
AGATAGAGTGACGGGATTGT+TGG 0.502060 6.3:+43408961 MS.gene57167:CDS
GTTTGCGGTTCCATTGAAGA+AGG 0.502690 6.3:-43408376 None:intergenic
TGGAAAAGCTTTGACTTGGT+TGG 0.503051 6.3:+43408715 MS.gene57167:CDS
AGAACCAGTGGAACTGGAGT+TGG 0.505336 6.3:-43408813 None:intergenic
GACGACGGAGAAGCCTAAAC+GGG 0.508282 6.3:-43408498 None:intergenic
TACAACGCGTGGGGTTTCGC+CGG 0.515932 6.3:-43408408 None:intergenic
TGGTTGAAGCTTTAAAAGCC+CGG 0.516057 6.3:+43408735 MS.gene57167:CDS
ACGGGATTGTTGGAGTGTGA+TGG 0.518610 6.3:+43408971 MS.gene57167:CDS
AACCGCAAACCCCAACTCTC+CGG 0.519734 6.3:+43408389 MS.gene57167:CDS
ATGTTGGGTTTGCCGTTGCT+TGG 0.520733 6.3:+43409082 MS.gene57167:CDS
GGCCTTTCTTTAGCCCGTTT+AGG 0.522513 6.3:+43408485 MS.gene57167:CDS
GATGGGTGATTGAAGGGAAG+TGG 0.523627 6.3:-43408298 None:intergenic
TGGGGAATGTGGGAGAGGGA+TGG 0.524913 6.3:-43408322 None:intergenic
GGTTGAAGCTTTAAAAGCCC+GGG 0.525956 6.3:+43408736 MS.gene57167:CDS
AGCCTAAACGGGCTAAAGAA+AGG 0.528847 6.3:-43408487 None:intergenic
AGATGATAGTGAATAGGGCT+AGG 0.530504 6.3:+43409008 MS.gene57167:CDS
AGTTCCATTTCCATTTCCAC+CGG 0.532503 6.3:-43408768 None:intergenic
TATGCAAGCTGTTATGGTTG+AGG 0.533160 6.3:+43409234 MS.gene57167:CDS
CGCGTTGTAGTAGTCACATC+CGG 0.533985 6.3:+43408422 MS.gene57167:CDS
AAAGCCCGGGGAGATAAAAC+CGG 0.540961 6.3:+43408749 MS.gene57167:CDS
GCCCAGCGGGGATCGATGCA+GGG 0.541734 6.3:+43408864 MS.gene57167:CDS
GCCAAACCAGCCAAAGTAGG+AGG 0.542195 6.3:-43409172 None:intergenic
ACATCCGGAAAAGGCGGAGT+TGG 0.544305 6.3:+43408437 MS.gene57167:CDS
GCCGATGTTAGCGGTTGTAG+TGG 0.546601 6.3:-43408465 None:intergenic
TAATCCGACGTCGGCGTCGA+TGG 0.548038 6.3:-43408522 None:intergenic
AAAGCCAAACCAGCCAAAGT+AGG 0.548994 6.3:-43409175 None:intergenic
GTTGGAACCAGAACCACCAT+TGG 0.552319 6.3:-43408795 None:intergenic
TGAGATTGGTGGTGGTGCCG+GGG 0.553356 6.3:-43408271 None:intergenic
ACAAGCTGCTTGGAGACTTG+TGG 0.556461 6.3:+43409201 MS.gene57167:CDS
GGTGCCGGGGTGGTTGTAGA+GGG 0.557844 6.3:-43408258 None:intergenic
AGGGATGCAGATAGAGTGAC+GGG 0.560584 6.3:+43408953 MS.gene57167:CDS
TAAAGAAAGGCCGATGTTAG+CGG 0.565526 6.3:-43408474 None:intergenic
GATAGTGAATAGGGCTAGGA+CGG 0.567848 6.3:+43409012 MS.gene57167:CDS
CAATCGATCAGGATAAAGTC+CGG 0.577067 6.3:-43408842 None:intergenic
GTCCGGACAGCCAGAACCAG+TGG 0.577561 6.3:-43408825 None:intergenic
CTTATAACCTCACTATCCTC+CGG 0.578009 6.3:-43409112 None:intergenic
GATTGGTGGTGGTGCCGGGG+TGG 0.578938 6.3:-43408268 None:intergenic
GGAGGCTTATTCAAAACAAG+TGG 0.583747 6.3:-43409154 None:intergenic
GTTGAGGAAGAGCCTAAAAG+AGG 0.586290 6.3:+43409250 MS.gene57167:CDS
GTCGCCATCGACGCCGACGT+CGG 0.588739 6.3:+43408518 MS.gene57167:CDS
TTTGCGGTTCCATTGAAGAA+GGG 0.588939 6.3:-43408375 None:intergenic
GGGGTTTCGCCGGAGAGTTG+GGG 0.590473 6.3:-43408398 None:intergenic
GTCGGCGTCGATGGCGACGA+CGG 0.595379 6.3:-43408513 None:intergenic
TTGGTGGAAAAGCTTTGACT+TGG 0.597183 6.3:+43408711 MS.gene57167:CDS
ACCACTACAACCGCTAACAT+CGG 0.600288 6.3:+43408464 MS.gene57167:CDS
ACCCTGCATCGATCCCCGCT+GGG 0.604891 6.3:-43408865 None:intergenic
GATGTGACTACTACAACGCG+TGG 0.607370 6.3:-43408419 None:intergenic
CATTACGCCTGCTAATGAAG+CGG 0.609060 6.3:+43408898 MS.gene57167:CDS
AAGGGATGCAGATAGAGTGA+CGG 0.617712 6.3:+43408952 MS.gene57167:CDS
GGAAATGGAACTGGAACCAA+TGG 0.618971 6.3:+43408779 MS.gene57167:CDS
GTTGCTTGGTGTTATACCGG+AGG 0.625941 6.3:+43409096 MS.gene57167:CDS
CTTTGGTTAGAGATAAACGT+TGG 0.628186 6.3:+43408633 MS.gene57167:CDS
ATGTGACTACTACAACGCGT+GGG 0.629497 6.3:-43408418 None:intergenic
TAAAGGCGAAGATATGATGT+CGG 0.631412 6.3:+43409042 MS.gene57167:CDS
TTATAAGGAGTACGAATCGA+GGG 0.635032 6.3:+43409128 MS.gene57167:CDS
GCCCGGGGAGATAAAACCGG+TGG 0.644531 6.3:+43408752 MS.gene57167:CDS
GAAGTGGGATTTGAGATTGG+TGG 0.644997 6.3:-43408282 None:intergenic
TGTTATACCGGAGGATAGTG+AGG 0.645901 6.3:+43409105 MS.gene57167:CDS
GTTATAAGGAGTACGAATCG+AGG 0.649607 6.3:+43409127 MS.gene57167:CDS
AATGGAACTGGAACCAATGG+TGG 0.654352 6.3:+43408782 MS.gene57167:CDS
GTAGTCACATCCGGAAAAGG+CGG 0.654517 6.3:+43408431 MS.gene57167:CDS
TTGAGGAAGAGCCTAAAAGA+GGG 0.658061 6.3:+43409251 MS.gene57167:CDS
TCCGGTATAACACCAAGCAA+CGG 0.658522 6.3:-43409094 None:intergenic
TGTGACTACTACAACGCGTG+GGG 0.658750 6.3:-43408417 None:intergenic
TCCTGATCGATTGCCCAGCG+GGG 0.660033 6.3:+43408852 MS.gene57167:CDS
GTTGAAGCTTTAAAAGCCCG+GGG 0.666393 6.3:+43408737 MS.gene57167:CDS
ACCGTCGTTGAGATTCTCAA+CGG 0.685318 6.3:+43408590 MS.gene57167:CDS
TATCCTGATCGATTGCCCAG+CGG 0.703174 6.3:+43408850 MS.gene57167:CDS
GCCGTTGAGAATCTCAACGA+CGG 0.724103 6.3:-43408591 None:intergenic
TAGGTTACGTAATCCGACGT+CGG 0.748882 6.3:-43408531 None:intergenic
CTATCCCTCTACAACCACCC+CGG 0.752007 6.3:+43408254 MS.gene57167:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAAGATGATAGTGAAT+AGG + chr6.3:43409002-43409021 MS.gene57167:CDS 20.0%
!!! TATTAAGATGATAGTGAATA+GGG + chr6.3:43409003-43409022 MS.gene57167:CDS 20.0%
! TCTAAATTACCTATTGGATT+TGG + chr6.3:43408692-43408711 MS.gene57167:CDS 25.0%
AAATTACCTATTGGATTTGG+TGG + chr6.3:43408695-43408714 MS.gene57167:CDS 30.0%
CCAATAGGTAATTTAGATCT+AGG - chr6.3:43408689-43408708 None:intergenic 30.0%
CCTAGATCTAAATTACCTAT+TGG + chr6.3:43408686-43408705 MS.gene57167:CDS 30.0%
!! GATTTTCAAGACCTAGTAAA+AGG - chr6.3:43408559-43408578 None:intergenic 30.0%
!!! AAGAAGGGATTTTGTTGTTA+GGG - chr6.3:43408363-43408382 None:intergenic 30.0%
!!! GATTTTGTTGTTAGGGTTTT+GGG - chr6.3:43408356-43408375 None:intergenic 30.0%
CAACAAAATCCCTTCTTCAA+TGG + chr6.3:43408366-43408385 MS.gene57167:CDS 35.0%
CTTTGGTTAGAGATAAACGT+TGG + chr6.3:43408633-43408652 MS.gene57167:CDS 35.0%
TAAAGGCGAAGATATGATGT+CGG + chr6.3:43409042-43409061 MS.gene57167:CDS 35.0%
TCCCTTAATGCAGTTATATC+CGG - chr6.3:43408938-43408957 None:intergenic 35.0%
TTTGAATAAGCCTCCTACTT+TGG + chr6.3:43409162-43409181 MS.gene57167:CDS 35.0%
! AACGAGAAAAACCCTCTTTT+AGG - chr6.3:43409265-43409284 None:intergenic 35.0%
! TTATAAGGAGTACGAATCGA+GGG + chr6.3:43409128-43409147 MS.gene57167:CDS 35.0%
!! AGAGGGTTTTTCTCGTTTTT+TGG + chr6.3:43409268-43409287 MS.gene57167:CDS 35.0%
!!! GAAGAAGGGATTTTGTTGTT+AGG - chr6.3:43408364-43408383 None:intergenic 35.0%
!!! GGATTTTGTTGTTAGGGTTT+TGG - chr6.3:43408357-43408376 None:intergenic 35.0%
AAAACCGGTGGAAATGGAAA+TGG + chr6.3:43408764-43408783 MS.gene57167:CDS 40.0%
AGTTCCATTTCCATTTCCAC+CGG - chr6.3:43408771-43408790 None:intergenic 40.0%
ATCAAAACCGCTTCATTAGC+AGG - chr6.3:43408908-43408927 None:intergenic 40.0%
CAAGACCTAGTAAAAGGTCT+AGG - chr6.3:43408553-43408572 None:intergenic 40.0%
CAATCGATCAGGATAAAGTC+CGG - chr6.3:43408845-43408864 None:intergenic 40.0%
CTTATAACCTCACTATCCTC+CGG - chr6.3:43409115-43409134 None:intergenic 40.0%
GCCGGATATAACTGCATTAA+GGG + chr6.3:43408934-43408953 MS.gene57167:CDS 40.0%
GCTAGGACGGATATGATTAA+AGG + chr6.3:43409025-43409044 MS.gene57167:CDS 40.0%
GGAGGCTTATTCAAAACAAG+TGG - chr6.3:43409157-43409176 None:intergenic 40.0%
GGATAGTATGCAAGCTGTTA+TGG + chr6.3:43409228-43409247 MS.gene57167:CDS 40.0%
TAAAGAAAGGCCGATGTTAG+CGG - chr6.3:43408477-43408496 None:intergenic 40.0%
TATGCAAGCTGTTATGGTTG+AGG + chr6.3:43409234-43409253 MS.gene57167:CDS 40.0%
TTGAGGAAGAGCCTAAAAGA+GGG + chr6.3:43409251-43409270 MS.gene57167:CDS 40.0%
TTGGATGTGCAAGAGATGTT+GGG + chr6.3:43409067-43409086 MS.gene57167:CDS 40.0%
TTTGCGGTTCCATTGAAGAA+GGG - chr6.3:43408378-43408397 None:intergenic 40.0%
TTTGGATGTGCAAGAGATGT+TGG + chr6.3:43409066-43409085 MS.gene57167:CDS 40.0%
! AGATGATAGTGAATAGGGCT+AGG + chr6.3:43409008-43409027 MS.gene57167:CDS 40.0%
! CGTAACCTAGACCTTTTACT+AGG + chr6.3:43408545-43408564 MS.gene57167:CDS 40.0%
! GCTTTTCCACCAAATCCAAT+AGG - chr6.3:43408704-43408723 None:intergenic 40.0%
! GTTATAAGGAGTACGAATCG+AGG + chr6.3:43409127-43409146 MS.gene57167:CDS 40.0%
! TTGGTGGAAAAGCTTTGACT+TGG + chr6.3:43408711-43408730 MS.gene57167:CDS 40.0%
!! TGGAAAAGCTTTGACTTGGT+TGG + chr6.3:43408715-43408734 MS.gene57167:CDS 40.0%
!! TGGTTGAAGCTTTAAAAGCC+CGG + chr6.3:43408735-43408754 MS.gene57167:CDS 40.0%
!!! CGAAGATATGATGTCGGTTT+TGG + chr6.3:43409048-43409067 MS.gene57167:CDS 40.0%
!!! GGGTTTTTCTCGTTTTTTGG+TGG + chr6.3:43409271-43409290 MS.gene57167:CDS 40.0%
!!! GTTGTTAGGGTTTTGGGTTT+GGG - chr6.3:43408350-43408369 None:intergenic 40.0%
!!! TGTTGTTAGGGTTTTGGGTT+TGG - chr6.3:43408351-43408370 None:intergenic 40.0%
AAAGCCAAACCAGCCAAAGT+AGG - chr6.3:43409178-43409197 None:intergenic 45.0%
AAGGGATGCAGATAGAGTGA+CGG + chr6.3:43408952-43408971 MS.gene57167:CDS 45.0%
AATAAGCCTCCTACTTTGGC+TGG + chr6.3:43409166-43409185 MS.gene57167:CDS 45.0%
AATGGAACTGGAACCAATGG+TGG + chr6.3:43408782-43408801 MS.gene57167:CDS 45.0%
ACCACTACAACCGCTAACAT+CGG + chr6.3:43408464-43408483 MS.gene57167:CDS 45.0%
ACCGTCGTTGAGATTCTCAA+CGG + chr6.3:43408590-43408609 MS.gene57167:CDS 45.0%
ATGGGTGATTGAAGGGAAGT+GGG - chr6.3:43408300-43408319 None:intergenic 45.0%
ATGTGACTACTACAACGCGT+GGG - chr6.3:43408421-43408440 None:intergenic 45.0%
CATTACGCCTGCTAATGAAG+CGG + chr6.3:43408898-43408917 MS.gene57167:CDS 45.0%
CGCCGGATATAACTGCATTA+AGG + chr6.3:43408933-43408952 MS.gene57167:CDS 45.0%
CGGAGGATAGTGAGGTTATA+AGG + chr6.3:43409113-43409132 MS.gene57167:CDS 45.0%
GATAGTGAATAGGGCTAGGA+CGG + chr6.3:43409012-43409031 MS.gene57167:CDS 45.0%
GATGGAGATGGGTGATTGAA+GGG - chr6.3:43408307-43408326 None:intergenic 45.0%
GGAAATGGAACTGGAACCAA+TGG + chr6.3:43408779-43408798 MS.gene57167:CDS 45.0%
GGAGATAAAACCGGTGGAAA+TGG + chr6.3:43408758-43408777 MS.gene57167:CDS 45.0%
GGTGGAAATGGAAATGGAAC+TGG + chr6.3:43408770-43408789 MS.gene57167:CDS 45.0%
GTAGTAGTCACATCCGGAAA+AGG + chr6.3:43408428-43408447 MS.gene57167:CDS 45.0%
GTTGAGGAAGAGCCTAAAAG+AGG + chr6.3:43409250-43409269 MS.gene57167:CDS 45.0%
GTTTGCGGTTCCATTGAAGA+AGG - chr6.3:43408379-43408398 None:intergenic 45.0%
TAGGTTACGTAATCCGACGT+CGG - chr6.3:43408534-43408553 None:intergenic 45.0%
TCCGGTATAACACCAAGCAA+CGG - chr6.3:43409097-43409116 None:intergenic 45.0%
TGTTATACCGGAGGATAGTG+AGG + chr6.3:43409105-43409124 MS.gene57167:CDS 45.0%
! AGATAGAGTGACGGGATTGT+TGG + chr6.3:43408961-43408980 MS.gene57167:CDS 45.0%
! AGGGAAGTGGGATTTGAGAT+TGG - chr6.3:43408288-43408307 None:intergenic 45.0%
! GAAGTGGGATTTGAGATTGG+TGG - chr6.3:43408285-43408304 None:intergenic 45.0%
! GTTGGAGTGTGATGGGATTA+GGG + chr6.3:43408979-43408998 MS.gene57167:CDS 45.0%
! TGGCTTTTGAACAAGCTGCT+TGG + chr6.3:43409191-43409210 MS.gene57167:CDS 45.0%
! TGTTGGAGTGTGATGGGATT+AGG + chr6.3:43408978-43408997 MS.gene57167:CDS 45.0%
! TTTACCAACTCCGCCTTTTC+CGG - chr6.3:43408444-43408463 None:intergenic 45.0%
!! AGCCTAAACGGGCTAAAGAA+AGG - chr6.3:43408490-43408509 None:intergenic 45.0%
!! AGCGGTTTTGATAACAACGC+CGG + chr6.3:43408916-43408935 MS.gene57167:CDS 45.0%
!! GGTTGAAGCTTTAAAAGCCC+GGG + chr6.3:43408736-43408755 MS.gene57167:CDS 45.0%
!! GTTGAAGCTTTAAAAGCCCG+GGG + chr6.3:43408737-43408756 MS.gene57167:CDS 45.0%
!! TTGTCGACTCGATCAAGCTT+TGG + chr6.3:43408616-43408635 MS.gene57167:CDS 45.0%
!!! AGGGTTTTGGGTTTGGGTTT+GGG - chr6.3:43408344-43408363 None:intergenic 45.0%
!!! TAGGGTTTTGGGTTTGGGTT+TGG - chr6.3:43408345-43408364 None:intergenic 45.0%
AAAGCCCGGGGAGATAAAAC+CGG + chr6.3:43408749-43408768 MS.gene57167:CDS 50.0%
ACAAGCTGCTTGGAGACTTG+TGG + chr6.3:43409201-43409220 MS.gene57167:CDS 50.0%
ACGGGATTGTTGGAGTGTGA+TGG + chr6.3:43408971-43408990 MS.gene57167:CDS 50.0%
ACTGGAACCAATGGTGGTTC+TGG + chr6.3:43408788-43408807 MS.gene57167:CDS 50.0%
AGAACCAGTGGAACTGGAGT+TGG - chr6.3:43408816-43408835 None:intergenic 50.0%
AGGGATGCAGATAGAGTGAC+GGG + chr6.3:43408953-43408972 MS.gene57167:CDS 50.0%
ATGTTGGGTTTGCCGTTGCT+TGG + chr6.3:43409082-43409101 MS.gene57167:CDS 50.0%
CGCGTTGTAGTAGTCACATC+CGG + chr6.3:43408422-43408441 MS.gene57167:CDS 50.0%
CGCTTCATTAGCAGGCGTAA+TGG - chr6.3:43408900-43408919 None:intergenic 50.0%
CGGGATTGTTGGAGTGTGAT+GGG + chr6.3:43408972-43408991 MS.gene57167:CDS 50.0%
GATGGGTGATTGAAGGGAAG+TGG - chr6.3:43408301-43408320 None:intergenic 50.0%
GATGTGACTACTACAACGCG+TGG - chr6.3:43408422-43408441 None:intergenic 50.0%
GCCGTTGAGAATCTCAACGA+CGG - chr6.3:43408594-43408613 None:intergenic 50.0%
GGATGGAGATGGGTGATTGA+AGG - chr6.3:43408308-43408327 None:intergenic 50.0%
GGCCTTTCTTTAGCCCGTTT+AGG + chr6.3:43408485-43408504 MS.gene57167:CDS 50.0%
GTAGTCACATCCGGAAAAGG+CGG + chr6.3:43408431-43408450 MS.gene57167:CDS 50.0%
GTTGGAACCAGAACCACCAT+TGG - chr6.3:43408798-43408817 None:intergenic 50.0%
TATCCTGATCGATTGCCCAG+CGG + chr6.3:43408850-43408869 MS.gene57167:CDS 50.0%
TGTGACTACTACAACGCGTG+GGG - chr6.3:43408420-43408439 None:intergenic 50.0%
! GGTTTGGGTTTGGGGAATGT+GGG - chr6.3:43408335-43408354 None:intergenic 50.0%
! GTGGGATTTGAGATTGGTGG+TGG - chr6.3:43408282-43408301 None:intergenic 50.0%
!! AACTCCAGTTCCACTGGTTC+TGG + chr6.3:43408815-43408834 MS.gene57167:CDS 50.0%
!! GCCGTTGCTTGGTGTTATAC+CGG + chr6.3:43409093-43409112 MS.gene57167:CDS 50.0%
!! GTTGCTTGGTGTTATACCGG+AGG + chr6.3:43409096-43409115 MS.gene57167:CDS 50.0%
!! TTTGAGATTGGTGGTGGTGC+CGG - chr6.3:43408276-43408295 None:intergenic 50.0%
!!! GGGTTTTGGGTTTGGGTTTG+GGG - chr6.3:43408343-43408362 None:intergenic 50.0%
!!! TTCCACCGGTTTTATCTCCC+CGG - chr6.3:43408757-43408776 None:intergenic 50.0%
AACCGCAAACCCCAACTCTC+CGG + chr6.3:43408389-43408408 MS.gene57167:CDS 55.0%
ACAGCCAGAACCAGTGGAAC+TGG - chr6.3:43408822-43408841 None:intergenic 55.0%
ACATCCGGAAAAGGCGGAGT+TGG + chr6.3:43408437-43408456 MS.gene57167:CDS 55.0%
ATCCTGATCGATTGCCCAGC+GGG + chr6.3:43408851-43408870 MS.gene57167:CDS 55.0%
ATGTGGGAGAGGGATGGAGA+TGG - chr6.3:43408319-43408338 None:intergenic 55.0%
CGACGACGGAGAAGCCTAAA+CGG - chr6.3:43408502-43408521 None:intergenic 55.0%
CTATCCCTCTACAACCACCC+CGG + chr6.3:43408254-43408273 MS.gene57167:CDS 55.0%
GACGACGGAGAAGCCTAAAC+GGG - chr6.3:43408501-43408520 None:intergenic 55.0%
GCCAAACCAGCCAAAGTAGG+AGG - chr6.3:43409175-43409194 None:intergenic 55.0%
GCCGATGTTAGCGGTTGTAG+TGG - chr6.3:43408468-43408487 None:intergenic 55.0%
GGTTCCAACTCCAGTTCCAC+TGG + chr6.3:43408809-43408828 MS.gene57167:CDS 55.0%
GGTTTGGGGAATGTGGGAGA+GGG - chr6.3:43408329-43408348 None:intergenic 55.0%
TGCTTGGAGACTTGTGGAGC+AGG + chr6.3:43409207-43409226 MS.gene57167:CDS 55.0%
TGTGGGAGAGGGATGGAGAT+GGG - chr6.3:43408318-43408337 None:intergenic 55.0%
! GCCTCCTACTTTGGCTGGTT+TGG + chr6.3:43409171-43409190 MS.gene57167:CDS 55.0%
! GGGTTTGGGTTTGGGGAATG+TGG - chr6.3:43408336-43408355 None:intergenic 55.0%
!! TTCCACTGGTTCTGGCTGTC+CGG + chr6.3:43408823-43408842 MS.gene57167:CDS 55.0%
!! TTGAGATTGGTGGTGGTGCC+GGG - chr6.3:43408275-43408294 None:intergenic 55.0%
!!! TCCACCGGTTTTATCTCCCC+GGG - chr6.3:43408756-43408775 None:intergenic 55.0%
GGGTTTGGGGAATGTGGGAG+AGG - chr6.3:43408330-43408349 None:intergenic 60.0%
TACAACGCGTGGGGTTTCGC+CGG - chr6.3:43408411-43408430 None:intergenic 60.0%
TCCTGATCGATTGCCCAGCG+GGG + chr6.3:43408852-43408871 MS.gene57167:CDS 60.0%
TGGGGAATGTGGGAGAGGGA+TGG - chr6.3:43408325-43408344 None:intergenic 60.0%
TGGGGTTTCGCCGGAGAGTT+GGG - chr6.3:43408402-43408421 None:intergenic 60.0%
! TAATCCGACGTCGGCGTCGA+TGG - chr6.3:43408525-43408544 None:intergenic 60.0%
!! TGAGATTGGTGGTGGTGCCG+GGG - chr6.3:43408274-43408293 None:intergenic 60.0%
CGCCGGAGAGTTGGGGTTTG+CGG - chr6.3:43408394-43408413 None:intergenic 65.0%
GCCCGGGGAGATAAAACCGG+TGG + chr6.3:43408752-43408771 MS.gene57167:CDS 65.0%
GGGGTTTCGCCGGAGAGTTG+GGG - chr6.3:43408401-43408420 None:intergenic 65.0%
GTCCGGACAGCCAGAACCAG+TGG - chr6.3:43408828-43408847 None:intergenic 65.0%
GTGGGGTTTCGCCGGAGAGT+TGG - chr6.3:43408403-43408422 None:intergenic 65.0%
TCCCCGCTGGGCAATCGATC+AGG - chr6.3:43408856-43408875 None:intergenic 65.0%
! AACCCTGCATCGATCCCCGC+TGG - chr6.3:43408869-43408888 None:intergenic 65.0%
! ACCCTGCATCGATCCCCGCT+GGG - chr6.3:43408868-43408887 None:intergenic 65.0%
! GGTGCCGGGGTGGTTGTAGA+GGG - chr6.3:43408261-43408280 None:intergenic 65.0%
! TGGTGCCGGGGTGGTTGTAG+AGG - chr6.3:43408262-43408281 None:intergenic 65.0%
GCCCAGCGGGGATCGATGCA+GGG + chr6.3:43408864-43408883 MS.gene57167:CDS 70.0%
GTCGCCATCGACGCCGACGT+CGG + chr6.3:43408518-43408537 MS.gene57167:CDS 70.0%
TGCCCAGCGGGGATCGATGC+AGG + chr6.3:43408863-43408882 MS.gene57167:CDS 70.0%
!! GATTGGTGGTGGTGCCGGGG+TGG - chr6.3:43408271-43408290 None:intergenic 70.0%
!! GTCGGCGTCGATGGCGACGA+CGG - chr6.3:43408516-43408535 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 43408251 43409297 43408251 ID=MS.gene57167
chr6.3 mRNA 43408251 43409297 43408251 ID=MS.gene57167.t1;Parent=MS.gene57167
chr6.3 exon 43408251 43409297 43408251 ID=MS.gene57167.t1.exon1;Parent=MS.gene57167.t1
chr6.3 CDS 43408251 43409297 43408251 ID=cds.MS.gene57167.t1;Parent=MS.gene57167.t1
Gene Sequence

>MS.gene57167

ATGCTATCCCTCTACAACCACCCCGGCACCACCACCAATCTCAAATCCCACTTCCCTTCAATCACCCATCTCCATCCCTCTCCCACATTCCCCAAACCCAAACCCAAAACCCTAACAACAAAATCCCTTCTTCAATGGAACCGCAAACCCCAACTCTCCGGCGAAACCCCACGCGTTGTAGTAGTCACATCCGGAAAAGGCGGAGTTGGTAAAACCACTACAACCGCTAACATCGGCCTTTCTTTAGCCCGTTTAGGCTTCTCCGTCGTCGCCATCGACGCCGACGTCGGATTACGTAACCTAGACCTTTTACTAGGTCTTGAAAATCGAGTCAACTACACCGTCGTTGAGATTCTCAACGGCGATTGTCGACTCGATCAAGCTTTGGTTAGAGATAAACGTTGGTCTAATTTTGAATTGCTTTGTATTTCTAAACCTAGATCTAAATTACCTATTGGATTTGGTGGAAAAGCTTTGACTTGGTTGGTTGAAGCTTTAAAAGCCCGGGGAGATAAAACCGGTGGAAATGGAAATGGAACTGGAACCAATGGTGGTTCTGGTTCCAACTCCAGTTCCACTGGTTCTGGCTGTCCGGACTTTATCCTGATCGATTGCCCAGCGGGGATCGATGCAGGGTTTATAACAGCCATTACGCCTGCTAATGAAGCGGTTTTGATAACAACGCCGGATATAACTGCATTAAGGGATGCAGATAGAGTGACGGGATTGTTGGAGTGTGATGGGATTAGGGATATTAAGATGATAGTGAATAGGGCTAGGACGGATATGATTAAAGGCGAAGATATGATGTCGGTTTTGGATGTGCAAGAGATGTTGGGTTTGCCGTTGCTTGGTGTTATACCGGAGGATAGTGAGGTTATAAGGAGTACGAATCGAGGGTATCCACTTGTTTTGAATAAGCCTCCTACTTTGGCTGGTTTGGCTTTTGAACAAGCTGCTTGGAGACTTGTGGAGCAGGATAGTATGCAAGCTGTTATGGTTGAGGAAGAGCCTAAAAGAGGGTTTTTCTCGTTTTTTGGTGGTTAA
Protein sequence

>MS.gene57167.t1

MLSLYNHPGTTTNLKSHFPSITHLHPSPTFPKPKPKTLTTKSLLQWNRKPQLSGETPRVVVVTSGKGGVGKTTTTANIGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEILNGDCRLDQALVRDKRWSNFELLCISKPRSKLPIGFGGKALTWLVEALKARGDKTGGNGNGTGTNGGSGSNSSSTGSGCPDFILIDCPAGIDAGFITAITPANEAVLITTPDITALRDADRVTGLLECDGIRDIKMIVNRARTDMIKGEDMMSVLDVQEMLGLPLLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMQAVMVEEEPKRGFFSFFGG