Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055971.t1 | XP_003625299.1 | 93.2 | 264 | 10 | 2 | 1 | 261 | 1 | 259 | 2.50E-132 | 481.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055971.t1 | G7KWA7 | 93.2 | 264 | 10 | 2 | 1 | 261 | 1 | 259 | 1.8e-132 | 481.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050099 | MS.gene055971 | 0.823725 | 1.19E-53 | -1.69E-46 |
| MS.gene050812 | MS.gene055971 | 0.823165 | 1.60E-53 | -1.69E-46 |
| MS.gene051171 | MS.gene055971 | 0.816476 | 5.42E-52 | -1.69E-46 |
| MS.gene051242 | MS.gene055971 | 0.815138 | 1.08E-51 | -1.69E-46 |
| MS.gene051244 | MS.gene055971 | 0.812292 | 4.56E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene055971 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene054719 | MS.gene055971 | 0.824262 | 8.88E-54 | -1.69E-46 |
| MS.gene055971 | MS.gene056796 | 0.82254 | 2.24E-53 | -1.69E-46 |
| MS.gene055971 | MS.gene05811 | 0.808943 | 2.42E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene058276 | 0.834354 | 3.15E-56 | -1.69E-46 |
| MS.gene055971 | MS.gene058743 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene060557 | 0.836248 | 1.05E-56 | -1.69E-46 |
| MS.gene055971 | MS.gene06470 | 0.811527 | 6.70E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene066845 | 0.801758 | 7.74E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene070756 | 0.846403 | 2.22E-59 | -1.69E-46 |
| MS.gene055971 | MS.gene073438 | 0.806575 | 7.70E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene073501 | 0.811656 | 6.28E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene07596 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene08674 | 0.820148 | 7.99E-53 | -1.69E-46 |
| MS.gene055971 | MS.gene08738 | 0.828305 | 9.68E-55 | -1.69E-46 |
| MS.gene055971 | MS.gene09573 | 0.844063 | 9.53E-59 | -1.69E-46 |
| MS.gene055971 | MS.gene20272 | 0.818752 | 1.66E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene20812 | 0.801515 | 8.68E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene22411 | 0.818869 | 1.57E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene23566 | 0.832253 | 1.05E-55 | -1.69E-46 |
| MS.gene055971 | MS.gene24226 | 0.816045 | 6.77E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene24612 | 0.830211 | 3.34E-55 | -1.69E-46 |
| MS.gene055971 | MS.gene27272 | 0.804872 | 1.75E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene28656 | 0.824156 | 9.40E-54 | -1.69E-46 |
| MS.gene055971 | MS.gene29515 | 0.808542 | 2.94E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene29757 | 0.86344 | 2.49E-64 | -1.69E-46 |
| MS.gene055971 | MS.gene29775 | 0.80341 | 3.53E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene29791 | 0.824473 | 7.92E-54 | -1.69E-46 |
| MS.gene055971 | MS.gene30687 | 0.806984 | 6.31E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene30690 | 0.853568 | 2.19E-61 | -1.69E-46 |
| MS.gene055971 | MS.gene32519 | 0.811312 | 7.46E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene33303 | 0.800002 | 1.77E-48 | -1.69E-46 |
| MS.gene055971 | MS.gene34445 | -0.810338 | 1.21E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene35560 | 0.812544 | 4.02E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene38554 | 0.809532 | 1.81E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene38689 | 0.837145 | 6.18E-57 | -1.69E-46 |
| MS.gene055971 | MS.gene39104 | 0.810016 | 1.42E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene39334 | 0.816618 | 5.04E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene39353 | 0.808287 | 3.34E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene40684 | 0.819447 | 1.16E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene41384 | -0.803017 | 4.26E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene41829 | 0.810091 | 1.37E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene43945 | 0.832568 | 8.78E-56 | -1.69E-46 |
| MS.gene055971 | MS.gene46923 | 0.846276 | 2.40E-59 | -1.69E-46 |
| MS.gene055971 | MS.gene49038 | -0.805785 | 1.13E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene49767 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene50134 | 0.801081 | 1.07E-48 | -1.69E-46 |
| MS.gene055971 | MS.gene52686 | 0.958615 | 1.52E-116 | -1.69E-46 |
| MS.gene055971 | MS.gene55959 | 0.828293 | 9.74E-55 | -1.69E-46 |
| MS.gene055971 | MS.gene57167 | 0.828166 | 1.05E-54 | -1.69E-46 |
| MS.gene055971 | MS.gene57671 | 0.805238 | 1.47E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene57853 | 0.809717 | 1.65E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene58998 | 0.812896 | 3.37E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene59564 | 0.83468 | 2.61E-56 | -1.69E-46 |
| MS.gene055971 | MS.gene60391 | 0.821464 | 3.98E-53 | -1.69E-46 |
| MS.gene055971 | MS.gene60813 | 0.800052 | 1.73E-48 | -1.69E-46 |
| MS.gene055971 | MS.gene60930 | 0.8158 | 7.68E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene60931 | 0.826005 | 3.44E-54 | -1.69E-46 |
| MS.gene055971 | MS.gene63820 | 0.846578 | 1.99E-59 | -1.69E-46 |
| MS.gene055971 | MS.gene67821 | 0.851136 | 1.08E-60 | -1.69E-46 |
| MS.gene055971 | MS.gene68937 | 0.809946 | 1.47E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene70091 | 0.817458 | 3.26E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene70118 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene70948 | -0.808612 | 2.84E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene74580 | 0.804062 | 2.59E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene74914 | 0.828718 | 7.69E-55 | -1.69E-46 |
| MS.gene055971 | MS.gene75015 | 0.836885 | 7.20E-57 | -1.69E-46 |
| MS.gene055971 | MS.gene75389 | 0.822226 | 2.65E-53 | -1.69E-46 |
| MS.gene055971 | MS.gene75634 | 0.81291 | 3.34E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene77565 | 0.801467 | 8.88E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene77571 | 0.820313 | 7.33E-53 | -1.69E-46 |
| MS.gene055971 | MS.gene79183 | 0.831641 | 1.49E-55 | -1.69E-46 |
| MS.gene055971 | MS.gene79677 | 0.821162 | 4.67E-53 | -1.69E-46 |
| MS.gene055971 | MS.gene80140 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene81435 | 0.8544 | 1.26E-61 | -1.69E-46 |
| MS.gene055971 | MS.gene81436 | 0.807771 | 4.30E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene82769 | 0.836969 | 6.85E-57 | -1.69E-46 |
| MS.gene055971 | MS.gene84825 | 0.817147 | 3.83E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene86003 | 0.841523 | 4.51E-58 | -1.69E-46 |
| MS.gene055971 | MS.gene90730 | 0.815853 | 7.47E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene90838 | 0.818524 | 1.87E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene90871 | 0.8051 | 1.57E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene91159 | 0.800644 | 1.31E-48 | -1.69E-46 |
| MS.gene055971 | MS.gene91483 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene94440 | 0.849048 | 4.15E-60 | -1.69E-46 |
| MS.gene055971 | MS.gene94661 | 0.853798 | 1.88E-61 | -1.69E-46 |
| MS.gene055971 | MS.gene95277 | 0.807485 | 4.94E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene96276 | 0.819139 | 1.36E-52 | -1.69E-46 |
| MS.gene055971 | MS.gene98291 | 0.811568 | 6.56E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene98526 | 0.85156 | 8.19E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055971.t1 | MTR_7g093640 | 93.182 | 264 | 10 | 2 | 1 | 261 | 1 | 259 | 1.05e-177 | 489 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055971.t1 | AT2G41950 | 53.333 | 195 | 84 | 1 | 73 | 260 | 71 | 265 | 6.58e-70 | 216 |
Find 43 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAGAATTCAAGGGTTT+TGG | 0.256792 | 7.4:+15347407 | MS.gene055971:CDS |
| AAGAACATCCTCAAGTTTAA+AGG | 0.259636 | 7.4:-15347637 | None:intergenic |
| AGGTCAGAAATTACTACTTC+TGG | 0.282494 | 7.4:-15349115 | None:intergenic |
| TGAGGATGTTCTTGCTTCAT+TGG | 0.285239 | 7.4:+15347647 | MS.gene055971:CDS |
| AGTTCAGGGAAATGGAATTA+AGG | 0.301525 | 7.4:-15347203 | None:intergenic |
| CTTTGATGTGGCTGAATTTG+TGG | 0.337260 | 7.4:+15349180 | MS.gene055971:CDS |
| AAGAATTCATCGACAAAGAT+TGG | 0.377860 | 7.4:+15347328 | MS.gene055971:CDS |
| ATTGACCGTATTATATCATC+TGG | 0.387173 | 7.4:+15347378 | MS.gene055971:CDS |
| TGGTCAGTGCTTGACTATAC+TGG | 0.395973 | 7.4:+15347348 | MS.gene055971:CDS |
| GAGTTTGTGGATTGTTTAGT+TGG | 0.406284 | 7.4:+15347447 | MS.gene055971:CDS |
| AACTAACCAGGTGAACATTT+CGG | 0.410159 | 7.4:-15347672 | None:intergenic |
| TGGTGGAATTTGCATGGTGG+TGG | 0.415264 | 7.4:-15347138 | None:intergenic |
| AAGTGGTTCTGAAGAGTTTG+TGG | 0.419196 | 7.4:+15347434 | MS.gene055971:CDS |
| GGAAAATTGATGAGAATTCA+AGG | 0.435740 | 7.4:+15347400 | MS.gene055971:CDS |
| GATATAATACGGTCAATGTT+TGG | 0.441601 | 7.4:-15347372 | None:intergenic |
| TGCTTTGCCCTTTAAACTTG+AGG | 0.443940 | 7.4:+15347629 | MS.gene055971:CDS |
| AGAACATCCTCAAGTTTAAA+GGG | 0.444786 | 7.4:-15347636 | None:intergenic |
| AGCTAAAGAAGATGAATTCA+TGG | 0.452626 | 7.4:-15347100 | None:intergenic |
| GAGATTTGATGATGATTTGA+GGG | 0.454324 | 7.4:-15347256 | None:intergenic |
| GGGTGGTGGAAAATGGGTTG+TGG | 0.455723 | 7.4:-15347180 | None:intergenic |
| TAAAGAAACACAACATCAAA+AGG | 0.463883 | 7.4:-15347597 | None:intergenic |
| GTTCAGGGAAATGGAATTAA+GGG | 0.464943 | 7.4:-15347202 | None:intergenic |
| TTCAGTATTTCTCTACCTTG+TGG | 0.465559 | 7.4:-15349073 | None:intergenic |
| GGTCAGAAATTACTACTTCT+GGG | 0.473415 | 7.4:-15349114 | None:intergenic |
| TCAAGTTTAAAGGGCAAAGC+AGG | 0.503741 | 7.4:-15347627 | None:intergenic |
| TGAGATTTGATGATGATTTG+AGG | 0.510757 | 7.4:-15347257 | None:intergenic |
| GGGTGGTGGAATTTGCATGG+TGG | 0.512751 | 7.4:-15347141 | None:intergenic |
| AGCTGCTAATTCCTTTGATG+TGG | 0.512960 | 7.4:+15349168 | MS.gene055971:CDS |
| GATAATATTAAGTGTTGGCA+AGG | 0.531345 | 7.4:+15347543 | MS.gene055971:CDS |
| TTTGTGGATTGTTTAGTTGG+TGG | 0.542847 | 7.4:+15347450 | MS.gene055971:CDS |
| TTTGAGGGTTTGAAGTGAAG+TGG | 0.548659 | 7.4:-15347241 | None:intergenic |
| GAAAATTGATGAGAATTCAA+GGG | 0.549018 | 7.4:+15347401 | MS.gene055971:CDS |
| TTTCTTCAGGGATTGAAACT+GGG | 0.564494 | 7.4:-15347284 | None:intergenic |
| CACAAATTCAGCCACATCAA+AGG | 0.572163 | 7.4:-15349179 | None:intergenic |
| AATATGATAATATTAAGTGT+TGG | 0.576851 | 7.4:+15347538 | MS.gene055971:CDS |
| TGGTGGTGGTGTGAGAATGA+AGG | 0.583844 | 7.4:-15347124 | None:intergenic |
| TATTAAGTGTTGGCAAGGAG+AGG | 0.585342 | 7.4:+15347548 | MS.gene055971:CDS |
| TTGGCTCCGAAATGTTCACC+TGG | 0.591346 | 7.4:+15347666 | MS.gene055971:CDS |
| GCTGAATTTGTGGATGAACA+TGG | 0.600819 | 7.4:+15349190 | MS.gene055971:CDS |
| TTCAGGGAAATGGAATTAAG+GGG | 0.628365 | 7.4:-15347201 | None:intergenic |
| TTGACCGTATTATATCATCT+GGG | 0.656909 | 7.4:+15347379 | MS.gene055971:CDS |
| TCAGGGAAATGGAATTAAGG+GGG | 0.657147 | 7.4:-15347200 | None:intergenic |
| GTGATTATCAGTCATCCACA+AGG | 0.692175 | 7.4:+15349058 | MS.gene055971:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGATAATATTAAGTGT+TGG | + | chr7.4:15347538-15347557 | MS.gene055971:CDS | 15.0% |
| !! | ATTGAAATTGAACAATATTT+GGG | + | chr7.4:15347922-15347941 | MS.gene055971:intron | 15.0% |
| !! | TATTGAAATTGAACAATATT+TGG | + | chr7.4:15347921-15347940 | MS.gene055971:intron | 15.0% |
| !!! | CGATTTATTCTTTTTAATTT+TGG | + | chr7.4:15349014-15349033 | MS.gene055971:intron | 15.0% |
| !! | ACAAAAATATTGTAAAACAG+CGG | - | chr7.4:15348087-15348106 | None:intergenic | 20.0% |
| !! | TTACTATTGTTCCTAAAAAA+TGG | + | chr7.4:15347571-15347590 | MS.gene055971:CDS | 20.0% |
| !!! | AATTTGTTCAAATTAAGCTA+TGG | + | chr7.4:15348045-15348064 | MS.gene055971:intron | 20.0% |
| !!! | GATAACATTTTGTACTAAAT+AGG | + | chr7.4:15347846-15347865 | MS.gene055971:intron | 20.0% |
| !!! | TCAAATTCCTTTTTACTATT+AGG | + | chr7.4:15348172-15348191 | MS.gene055971:intron | 20.0% |
| !!! | TTTCTTATCTAGTTTAGTAT+TGG | + | chr7.4:15347695-15347714 | MS.gene055971:intron | 20.0% |
| !!! | TTTTTCTAATTTGTGATGAT+AGG | - | chr7.4:15348406-15348425 | None:intergenic | 20.0% |
| ! | AACTGGCATAATATATAAAC+TGG | - | chr7.4:15348198-15348217 | None:intergenic | 25.0% |
| ! | ACCTTATACATTTGATTATG+AGG | + | chr7.4:15348840-15348859 | MS.gene055971:intron | 25.0% |
| ! | AGTTTCAATATGCAATGAAA+TGG | - | chr7.4:15347750-15347769 | None:intergenic | 25.0% |
| ! | ATCTAGCAATGAAAAATGTA+TGG | - | chr7.4:15348891-15348910 | None:intergenic | 25.0% |
| ! | GAAAATTGATGAGAATTCAA+GGG | + | chr7.4:15347401-15347420 | MS.gene055971:CDS | 25.0% |
| ! | GTTTATATATTATGCCAGTT+TGG | + | chr7.4:15348198-15348217 | MS.gene055971:intron | 25.0% |
| ! | TAAAGAAACACAACATCAAA+AGG | - | chr7.4:15347600-15347619 | None:intergenic | 25.0% |
| ! | TAAGATCTCATGAAATTAAC+AGG | - | chr7.4:15348313-15348332 | None:intergenic | 25.0% |
| ! | TGAATATATGTGTTGTCAAT+TGG | + | chr7.4:15348005-15348024 | MS.gene055971:intron | 25.0% |
| !! | CTTTGTAAATGTGTTTTATC+AGG | - | chr7.4:15349142-15349161 | None:intergenic | 25.0% |
| !! | TGAAACAAGAAATTGTTGTT+TGG | + | chr7.4:15348773-15348792 | MS.gene055971:intron | 25.0% |
| !! | TTTTCCCAGATGATATAATA+CGG | - | chr7.4:15347386-15347405 | None:intergenic | 25.0% |
| !!! | AAAAATTGGATTTTGAGTTC+AGG | - | chr7.4:15347221-15347240 | None:intergenic | 25.0% |
| !!! | AAAATTGGATTTTGAGTTCA+GGG | - | chr7.4:15347220-15347239 | None:intergenic | 25.0% |
| !!! | TAATTTTGGTTTTGACATGT+AGG | + | chr7.4:15349028-15349047 | MS.gene055971:intron | 25.0% |
| !!! | TTTTAAAACAGAGTCCAAAA+GGG | + | chr7.4:15348586-15348605 | MS.gene055971:intron | 25.0% |
| !!! | TTTTTAAAACAGAGTCCAAA+AGG | + | chr7.4:15348585-15348604 | MS.gene055971:intron | 25.0% |
| AAGAACATCCTCAAGTTTAA+AGG | - | chr7.4:15347640-15347659 | None:intergenic | 30.0% | |
| AAGAATTCATCGACAAAGAT+TGG | + | chr7.4:15347328-15347347 | MS.gene055971:CDS | 30.0% | |
| AGAACATCCTCAAGTTTAAA+GGG | - | chr7.4:15347639-15347658 | None:intergenic | 30.0% | |
| ATAGCAATACGATAATGTCA+CGG | - | chr7.4:15347904-15347923 | None:intergenic | 30.0% | |
| ATCTCATGAAATTAACAGGT+AGG | - | chr7.4:15348309-15348328 | None:intergenic | 30.0% | |
| ATTGACCGTATTATATCATC+TGG | + | chr7.4:15347378-15347397 | MS.gene055971:CDS | 30.0% | |
| ATTGCATAGTGTTTCATGAA+AGG | - | chr7.4:15348694-15348713 | None:intergenic | 30.0% | |
| CACAAGAAAATCCATTAAGT+TGG | - | chr7.4:15348866-15348885 | None:intergenic | 30.0% | |
| CTAGATAAGAAAAACTAACC+AGG | - | chr7.4:15347687-15347706 | None:intergenic | 30.0% | |
| GAAATTGAACAATATTTGGG+TGG | + | chr7.4:15347925-15347944 | MS.gene055971:intron | 30.0% | |
| GATATAATACGGTCAATGTT+TGG | - | chr7.4:15347375-15347394 | None:intergenic | 30.0% | |
| GCCTCATAATCAAATGTATA+AGG | - | chr7.4:15348844-15348863 | None:intergenic | 30.0% | |
| GGAAAATTGATGAGAATTCA+AGG | + | chr7.4:15347400-15347419 | MS.gene055971:CDS | 30.0% | |
| TATGTGTTGTCAATTGGATA+TGG | + | chr7.4:15348011-15348030 | MS.gene055971:intron | 30.0% | |
| TTGAAGTGAAGTGGAAAAAT+TGG | - | chr7.4:15347235-15347254 | None:intergenic | 30.0% | |
| TTGACCGTATTATATCATCT+GGG | + | chr7.4:15347379-15347398 | MS.gene055971:CDS | 30.0% | |
| ! | AAACTGGCCTAATAGTAAAA+AGG | - | chr7.4:15348182-15348201 | None:intergenic | 30.0% |
| ! | ATACTTACTGCTCAAGTTTT+AGG | - | chr7.4:15348744-15348763 | None:intergenic | 30.0% |
| ! | GCTAGATTTTCATTGTGTTT+AGG | + | chr7.4:15348904-15348923 | MS.gene055971:intron | 30.0% |
| ! | GTAAATGTGTTTTATCAGGA+AGG | - | chr7.4:15349138-15349157 | None:intergenic | 30.0% |
| !! | GAGATTTGATGATGATTTGA+GGG | - | chr7.4:15347259-15347278 | None:intergenic | 30.0% |
| !! | GATAATATTAAGTGTTGGCA+AGG | + | chr7.4:15347543-15347562 | MS.gene055971:CDS | 30.0% |
| !! | TCATGACTCACTTTTGATAT+TGG | + | chr7.4:15347500-15347519 | MS.gene055971:CDS | 30.0% |
| !! | TGAGATTTGATGATGATTTG+AGG | - | chr7.4:15347260-15347279 | None:intergenic | 30.0% |
| !!! | ACTCTGTTTTAAAAAGAGGT+CGG | - | chr7.4:15348580-15348599 | None:intergenic | 30.0% |
| !!! | GTTGTGGTTTGTTTTGAAAA+CGG | - | chr7.4:15347167-15347186 | None:intergenic | 30.0% |
| !!! | TAGCTGTTTTGATCAAATCT+AGG | + | chr7.4:15349221-15349240 | MS.gene055971:CDS | 30.0% |
| !!! | TCAAAAGGAGACCATTTTTT+AGG | - | chr7.4:15347585-15347604 | None:intergenic | 30.0% |
| !!! | TTGGACTCTGTTTTAAAAAG+AGG | - | chr7.4:15348584-15348603 | None:intergenic | 30.0% |
| !!! | TTGTGGTTTGTTTTGAAAAC+GGG | - | chr7.4:15347166-15347185 | None:intergenic | 30.0% |
| AACTAACCAGGTGAACATTT+CGG | - | chr7.4:15347675-15347694 | None:intergenic | 35.0% | |
| AGGTCAGAAATTACTACTTC+TGG | - | chr7.4:15349118-15349137 | None:intergenic | 35.0% | |
| AGTTCAGGGAAATGGAATTA+AGG | - | chr7.4:15347206-15347225 | None:intergenic | 35.0% | |
| CAATTTAGATTGCGACAACA+AGG | - | chr7.4:15348551-15348570 | None:intergenic | 35.0% | |
| GGTCAGAAATTACTACTTCT+GGG | - | chr7.4:15349117-15349136 | None:intergenic | 35.0% | |
| GGTGGTAGAGAAAGTAATAA+AGG | + | chr7.4:15347943-15347962 | MS.gene055971:intron | 35.0% | |
| GTTCAGGGAAATGGAATTAA+GGG | - | chr7.4:15347205-15347224 | None:intergenic | 35.0% | |
| TGAAATGCTCATCCAAATGT+TGG | - | chr7.4:15348155-15348174 | None:intergenic | 35.0% | |
| TGATTATGAGGCCAACTTAA+TGG | + | chr7.4:15348852-15348871 | MS.gene055971:intron | 35.0% | |
| TTAGTGCGTGTTTGAAAATG+CGG | - | chr7.4:15348974-15348993 | None:intergenic | 35.0% | |
| TTCAGGGAAATGGAATTAAG+GGG | - | chr7.4:15347204-15347223 | None:intergenic | 35.0% | |
| TTCAGTATTTCTCTACCTTG+TGG | - | chr7.4:15349076-15349095 | None:intergenic | 35.0% | |
| TTTCTTCAGGGATTGAAACT+GGG | - | chr7.4:15347287-15347306 | None:intergenic | 35.0% | |
| ! | ACATAAGATGCGTTTTCTTC+AGG | - | chr7.4:15347300-15347319 | None:intergenic | 35.0% |
| ! | AGAGGTATAGAAGCATATAG+AGG | - | chr7.4:15348808-15348827 | None:intergenic | 35.0% |
| ! | CATAAGATGCGTTTTCTTCA+GGG | - | chr7.4:15347299-15347318 | None:intergenic | 35.0% |
| ! | GAGTTTGTGGATTGTTTAGT+TGG | + | chr7.4:15347447-15347466 | MS.gene055971:CDS | 35.0% |
| ! | TGATGAGAATTCAAGGGTTT+TGG | + | chr7.4:15347407-15347426 | MS.gene055971:CDS | 35.0% |
| ! | TTTGTGGATTGTTTAGTTGG+TGG | + | chr7.4:15347450-15347469 | MS.gene055971:CDS | 35.0% |
| ! | TTTTCTTCAGGGATTGAAAC+TGG | - | chr7.4:15347288-15347307 | None:intergenic | 35.0% |
| !!! | TGTGGTTTGTTTTGAAAACG+GGG | - | chr7.4:15347165-15347184 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTTGACATGTAGG+TGG | + | chr7.4:15349031-15349050 | MS.gene055971:intron | 35.0% |
| AAAGTAGCAGTTCTGCTTAG+CGG | - | chr7.4:15347826-15347845 | None:intergenic | 40.0% | |
| AATGCTCATCCAAATGTTGG+CGG | - | chr7.4:15348152-15348171 | None:intergenic | 40.0% | |
| AGCTGCTAATTCCTTTGATG+TGG | + | chr7.4:15349168-15349187 | MS.gene055971:CDS | 40.0% | |
| CAATTGTGAATCGCAGATTG+CGG | + | chr7.4:15347771-15347790 | MS.gene055971:intron | 40.0% | |
| CACAAATTCAGCCACATCAA+AGG | - | chr7.4:15349182-15349201 | None:intergenic | 40.0% | |
| CTTGATATTGTAGAGAGACG+CGG | + | chr7.4:15348481-15348500 | MS.gene055971:intron | 40.0% | |
| CTTTGATGTGGCTGAATTTG+TGG | + | chr7.4:15349180-15349199 | MS.gene055971:CDS | 40.0% | |
| GCTGAATTTGTGGATGAACA+TGG | + | chr7.4:15349190-15349209 | MS.gene055971:CDS | 40.0% | |
| GTGATTATCAGTCATCCACA+AGG | + | chr7.4:15349058-15349077 | MS.gene055971:CDS | 40.0% | |
| GTGTTGTCAATTGGATATGG+CGG | + | chr7.4:15348014-15348033 | MS.gene055971:intron | 40.0% | |
| GTTCAAATTCCGCCAACATT+TGG | + | chr7.4:15348140-15348159 | MS.gene055971:intron | 40.0% | |
| GTTGAAATGCTCATCCAAAC+TGG | - | chr7.4:15348215-15348234 | None:intergenic | 40.0% | |
| TAAGGTGCACTTTGTAGAAG+AGG | - | chr7.4:15348826-15348845 | None:intergenic | 40.0% | |
| TCAAGTTTAAAGGGCAAAGC+AGG | - | chr7.4:15347630-15347649 | None:intergenic | 40.0% | |
| TCAGGGAAATGGAATTAAGG+GGG | - | chr7.4:15347203-15347222 | None:intergenic | 40.0% | |
| TCGCAGATTGCGGAAAATAA+TGG | + | chr7.4:15347781-15347800 | MS.gene055971:intron | 40.0% | |
| TGAGGATGTTCTTGCTTCAT+TGG | + | chr7.4:15347647-15347666 | MS.gene055971:CDS | 40.0% | |
| TGCTTTGCCCTTTAAACTTG+AGG | + | chr7.4:15347629-15347648 | MS.gene055971:CDS | 40.0% | |
| ! | CAACTAAGAGTCTAAGACAG+TGG | - | chr7.4:15348451-15348470 | None:intergenic | 40.0% |
| ! | TCATACACAATGAGCCCTTT+TGG | - | chr7.4:15348603-15348622 | None:intergenic | 40.0% |
| ! | TTTGAGGGTTTGAAGTGAAG+TGG | - | chr7.4:15347244-15347263 | None:intergenic | 40.0% |
| ! | TTTTATTGTCTCCACTCTCC+AGG | - | chr7.4:15348528-15348547 | None:intergenic | 40.0% |
| !! | AAGTGGTTCTGAAGAGTTTG+TGG | + | chr7.4:15347434-15347453 | MS.gene055971:CDS | 40.0% |
| !! | GTTTTGACATGTAGGTGGAA+GGG | + | chr7.4:15349036-15349055 | MS.gene055971:intron | 40.0% |
| !! | TATTAAGTGTTGGCAAGGAG+AGG | + | chr7.4:15347548-15347567 | MS.gene055971:CDS | 40.0% |
| !!! | CTGTTTTAAAAAGAGGTCGG+CGG | - | chr7.4:15348577-15348596 | None:intergenic | 40.0% |
| !!! | GGATTTTGAGTTCAGGGAAA+TGG | - | chr7.4:15347214-15347233 | None:intergenic | 40.0% |
| !!! | GTGGTTTGTTTTGAAAACGG+GGG | - | chr7.4:15347164-15347183 | None:intergenic | 40.0% |
| !!! | TCAAGGGTTTTGGTTTCAAG+TGG | + | chr7.4:15347417-15347436 | MS.gene055971:CDS | 40.0% |
| AAATGGAATTAAGGGGGTGG+TGG | - | chr7.4:15347197-15347216 | None:intergenic | 45.0% | |
| TGGTCAGTGCTTGACTATAC+TGG | + | chr7.4:15347348-15347367 | MS.gene055971:CDS | 45.0% | |
| !! | ATTAAGGGGGTGGTGGAAAA+TGG | - | chr7.4:15347190-15347209 | None:intergenic | 45.0% |
| !! | GGTTTTGACATGTAGGTGGA+AGG | + | chr7.4:15349035-15349054 | MS.gene055971:intron | 45.0% |
| !! | TTAAGGGGGTGGTGGAAAAT+GGG | - | chr7.4:15347189-15347208 | None:intergenic | 45.0% |
| !!! | GTTTGTTTTGAAAACGGGGG+TGG | - | chr7.4:15347161-15347180 | None:intergenic | 45.0% |
| ACTCTCCAGGATCACTATCG+AGG | - | chr7.4:15348515-15348534 | None:intergenic | 50.0% | |
| ATGTGCCTCGATAGTGATCC+TGG | + | chr7.4:15348507-15348526 | MS.gene055971:intron | 50.0% | |
| GGGAAATGGAATTAAGGGGG+TGG | - | chr7.4:15347200-15347219 | None:intergenic | 50.0% | |
| GTGCGTGTTTGAAAATGCGG+TGG | - | chr7.4:15348971-15348990 | None:intergenic | 50.0% | |
| TCGATAGTGATCCTGGAGAG+TGG | + | chr7.4:15348514-15348533 | MS.gene055971:intron | 50.0% | |
| TGGTGGAATTTGCATGGTGG+TGG | - | chr7.4:15347141-15347160 | None:intergenic | 50.0% | |
| TTGGCTCCGAAATGTTCACC+TGG | + | chr7.4:15347666-15347685 | MS.gene055971:CDS | 50.0% | |
| !! | TGGTGGTGGTGTGAGAATGA+AGG | - | chr7.4:15347127-15347146 | None:intergenic | 50.0% |
| !!! | TGTTTTGAAAACGGGGGTGG+TGG | - | chr7.4:15347158-15347177 | None:intergenic | 50.0% |
| !! | GGGTGGTGGAAAATGGGTTG+TGG | - | chr7.4:15347183-15347202 | None:intergenic | 55.0% |
| !! | GGGTGGTGGAATTTGCATGG+TGG | - | chr7.4:15347144-15347163 | None:intergenic | 55.0% |
| !! | CGGGGGTGGTGGAATTTGCA+TGG | - | chr7.4:15347147-15347166 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 15347102 | 15349249 | 15347102 | ID=MS.gene055971 |
| chr7.4 | mRNA | 15347102 | 15349249 | 15347102 | ID=MS.gene055971.t1;Parent=MS.gene055971 |
| chr7.4 | exon | 15347102 | 15347687 | 15347102 | ID=MS.gene055971.t1.exon1;Parent=MS.gene055971.t1 |
| chr7.4 | CDS | 15347102 | 15347687 | 15347102 | ID=cds.MS.gene055971.t1;Parent=MS.gene055971.t1 |
| chr7.4 | exon | 15349050 | 15349249 | 15349050 | ID=MS.gene055971.t1.exon2;Parent=MS.gene055971.t1 |
| chr7.4 | CDS | 15349050 | 15349249 | 15349050 | ID=cds.MS.gene055971.t1;Parent=MS.gene055971.t1 |
| Gene Sequence |
| Protein sequence |
