AlfalfaGEDB | MS.gene57169

M. sativa cultivar XinJiangDaYe / MS.gene57169

KEGG: K07198
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF02149.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57169.t1	RHN51456.1	94.1	512	30	0	1	512	1	512	1.30E-270	941.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57169.t1	Q38997	77.5	516	108	5	1	512	1	512	1.5e-225	783.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57169.t1	A0A396HDX8	94.1	512	30	0	1	512	1	512	9.6e-271	941.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene03648	MS.gene57169	PPI
MS.gene57169	MS.gene051728	PPI
MS.gene57169	MS.gene03659	PPI
MS.gene57169	MS.gene91712	PPI
MS.gene57169	MS.gene64546	PPI
MS.gene57169	MS.gene64629	PPI
MS.gene57169	MS.gene019006	PPI
MS.gene57169	MS.gene018998	PPI
MS.gene57169	MS.gene90308	PPI
MS.gene57169	MS.gene022994	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57169.t1	MTR_6g048250	98.047	512	10	0	1	512	1	512	0.0	1046
MS.gene57169.t1	MTR_6g012990	94.727	512	14	1	1	512	1	499	0.0	998
MS.gene57169.t1	MTR_6g048250	98.489	397	6	0	1	397	1	397	0.0	813
MS.gene57169.t1	MTR_3g099920	77.902	448	96	1	1	448	1	445	0.0	733
MS.gene57169.t1	MTR_6g048250	99.148	352	3	0	1	352	1	352	0.0	721
MS.gene57169.t1	MTR_6g012990	98.571	350	5	0	1	350	1	350	0.0	712
MS.gene57169.t1	MTR_6g012980	67.354	291	94	1	1	290	55	345	7.33e-140	410
MS.gene57169.t1	MTR_8g024590	49.213	254	128	1	19	271	17	270	1.40e-86	273
MS.gene57169.t1	MTR_5g067150	50.394	254	125	1	19	271	9	262	3.58e-86	270
MS.gene57169.t1	MTR_5g088350	50.391	256	124	1	19	271	13	268	4.87e-86	269

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57169.t1	AT3G01090	82.398	517	81	8	1	512	24	535	0.0	863
MS.gene57169.t1	AT3G01090	82.398	517	81	8	1	512	1	512	0.0	862
MS.gene57169.t1	AT3G01090	82.398	517	81	8	1	512	1	512	0.0	862
MS.gene57169.t1	AT3G29160	75.922	515	118	4	1	512	1	512	0.0	797
MS.gene57169.t1	AT3G29160	75.922	515	118	4	1	512	1	512	0.0	797
MS.gene57169.t1	AT5G39440	62.718	515	168	5	1	512	1	494	0.0	644
MS.gene57169.t1	AT3G29160	84.571	350	53	1	1	349	1	350	0.0	616
MS.gene57169.t1	AT4G24400	51.765	255	122	1	19	272	9	263	1.83e-90	283
MS.gene57169.t1	AT5G21326	52.529	257	117	2	19	271	13	268	4.62e-90	283
MS.gene57169.t1	AT2G26980	51.953	256	120	1	19	271	14	269	7.51e-90	280

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Find 142 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGCCCTTGGACTTC+AGG	0.312446	6.3:+43385293	MS.gene57169:CDS
AAACTCAGCTCCAAGATAGC+CGG	0.581044	6.3:-43384771	None:intergenic
AAAGATCCAAGAAAAGAAAC+TGG	0.384531	6.3:-43386765	None:intergenic
AACATGGACATGGAAGAAAA+AGG	0.425723	6.3:+43382345	MS.gene57169:CDS
AACCCCAACCGACATTTATG+TGG	0.563208	6.3:+43382690	MS.gene57169:CDS
AACCGACATTTATGTGGTGA+TGG	0.584552	6.3:+43382696	MS.gene57169:CDS
AACCTCTGGAGCTGCATAGT+TGG	0.437966	6.3:-43383047	None:intergenic
AACGCGAAGCTGCGCAAGGA+AGG	0.495202	6.3:-43386794	None:intergenic
AACTTGACTACAGTTGAATT+AGG	0.320340	6.3:-43385762	None:intergenic
AAGATCCAAGAAAAGAAACT+GGG	0.595072	6.3:-43386764	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTACAAATGTTTAGCAG+GGG	-	chr6.3:43385916-43385935	None:intergenic	30.0%
AAAGATAAGTTTCACACACA+CGG	-	chr6.3:43385006-43385025	None:intergenic	30.0%
AAAGATCCAAGAAAAGAAAC+TGG	-	chr6.3:43386768-43386787	None:intergenic	30.0%
AACTTGACTACAGTTGAATT+AGG	-	chr6.3:43385765-43385784	None:intergenic	30.0%
AAGATCCAAGAAAAGAAACT+GGG	-	chr6.3:43386767-43386786	None:intergenic	30.0%
AATATCTGCTTGATCTTCAA+AGG	+	chr6.3:43386731-43386750	MS.gene57169:CDS	30.0%
ACAAAAGTAATTATACCTGC+TGG	-	chr6.3:43382801-43382820	None:intergenic	30.0%
ATATTATATGCAACACATGG+GGG	-	chr6.3:43384486-43384505	None:intergenic	30.0%
ATTAAAAAATAGGAGGTTGG+AGG	-	chr6.3:43385975-43385994	None:intergenic	30.0%
ATTACATAGTAGAAAAGGGT+AGG	+	chr6.3:43382746-43382765	MS.gene57169:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	43382177	43386822	43382177	ID=MS.gene57169
chr6.3	mRNA	43382177	43386822	43382177	ID=MS.gene57169.t1;Parent=MS.gene57169
chr6.3	exon	43382177	43382366	43382177	ID=MS.gene57169.t1.exon1;Parent=MS.gene57169.t1
chr6.3	CDS	43382177	43382366	43382177	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43382620	43382804	43382620	ID=MS.gene57169.t1.exon2;Parent=MS.gene57169.t1
chr6.3	CDS	43382620	43382804	43382620	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43382884	43383066	43382884	ID=MS.gene57169.t1.exon3;Parent=MS.gene57169.t1
chr6.3	CDS	43382884	43383066	43382884	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43383155	43383286	43383155	ID=MS.gene57169.t1.exon4;Parent=MS.gene57169.t1
chr6.3	CDS	43383155	43383286	43383155	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43384196	43384381	43384196	ID=MS.gene57169.t1.exon5;Parent=MS.gene57169.t1
chr6.3	CDS	43384196	43384381	43384196	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43384561	43384650	43384561	ID=MS.gene57169.t1.exon6;Parent=MS.gene57169.t1
chr6.3	CDS	43384561	43384650	43384561	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43384722	43384805	43384722	ID=MS.gene57169.t1.exon7;Parent=MS.gene57169.t1
chr6.3	CDS	43384722	43384805	43384722	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43385174	43385314	43385174	ID=MS.gene57169.t1.exon8;Parent=MS.gene57169.t1
chr6.3	CDS	43385174	43385314	43385174	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43385558	43385794	43385558	ID=MS.gene57169.t1.exon9;Parent=MS.gene57169.t1
chr6.3	CDS	43385558	43385794	43385558	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1
chr6.3	exon	43386712	43386822	43386712	ID=MS.gene57169.t1.exon10;Parent=MS.gene57169.t1
chr6.3	CDS	43386712	43386822	43386712	ID=cds.MS.gene57169.t1;Parent=MS.gene57169.t1

Gene Sequence

>MS.gene57169

ATGGATGGATCAGCTGGCCCTGGTGGTGGAAATGTGAACGCGTTTCTACGGAATTACAAAATGGGGAAAACTCTTGGTATTGGGTCGTTTGGCAAAGTGAAAATTGCCGAGCACGTACTGACGGGTCATAAAGTCGCCATTAAGATTCTCAATCGCCGAAAAATAAAGAACATGGACATGGAAGAAAAAGGTTTGGATGCTTCGCGTACCAAATGACTCATACTCCATATCGAATTGCAGGACTAGATTTTAACTGTTTCCAGTTTTTTACTTTCTTTTTTCAGTAATTTCTTATCTCTAGGTTCAAAAACATTGCGTGTCTGTTTTGTTGATTGATAATTGATTTTCGTAAGCAATAGTTTTCAAATTCTGTGTTTTTGCTTCAGCTAATTCTCGGTCAATTCAATATGCTTATAATTTTTCATTTCTTCAATCTGTCGCAGTTAGAAGAGAAATAAAAATTTTAAGATTGTTCATGCATCACCACATTATACGCCTTTATGAGGTTGTAGAAACCCCAACCGACATTTATGTGGTGATGGAGTATGTGAAATCTGGAGAACTTTTCGATTACATAGTAGAAAAGGGTAGGCTTCAAGAAGATGAAGCTCGCAGTTTCTTCCAGCAGGTATAATTACTTTTGTCGTGTGCTTGAGAAGCTTATACTTGTCATAGAGTATTTAAGCTAACTTCTACTTTGGAAGTAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTAGTTCATAGAGACCTGAAACCCGAAAATTTACTTTTGGACTCAAAATGGAGTGTCAAGATTGCTGATTTTGGCCTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGCGGAAGCCCCAACTATGCAGCTCCAGAGGTTTGTACATCTAAGATTTTAAATTGTTAACTGACCAAGTTATTATTGTTAGTGTTCATGCGTGATGATCAAACTGTTCTTTTTGCAGGTTATCTCTGGGAAATTATATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATATGCACTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAATATTCCCAACCTCTTCAAAAAAATAAAGGTATAATTTCTTTTCTTTTTTTTCCTCTTTGTTTTGTGAGTTTGTAAGGACTAATAGATATATATCACCCACCATTGTCGTGTCATATTTATTGGATTTTGGGTTTGGGCCTAACTCACCCCCTAAAGCTAGCTCATCGGGCAAGGATTACTCATGACCATTCTTCAGTCTTACTCCAACAAAAGGAACCCATTTCCACCATTTTTCAGAGTTCAGTCTTTAATAATTTTGAACCTTTTGATTCTTCAGTCCCATCGATTTTGACTTGTTATACGCTATGTGCTGAGCTGTGAAATTATCTTATGATCTATGAATCTATCCATCAATTTTGAATAGTTATGCGATGTTTGTATATGTCTTCCCTTGTCCAGTCCAGCGTTTGTTTGCAGTTTGTTTACAGAGTATTTTAATTTATTATTTGGTTTTCTTCATGACTGAGTTAGAATGTTGAATATTTAATATACACGTACCTTTTGCTTTACAATTTTGATCATATTCATTACCGAGGAAAGGAAGGTCTTCATCATCCTTTCTGGTCTTATGATAGAAAGAGACATGCTCCACACGGAAGAAAAATTGGGGAAATATACCAAAGTTTTTACTGGTTGATCATGAAACTTATAGCATCCTACTCATATATCGATTTTGCACGAATTTCATTATGCAGTCTCACGATTCTTTTCTGTCTTGAGTTCTGATGTATGATCTAAATTGCTGTAGAGAGTTCATAATGTAACGTAGTAAAGTCTTATGTGTTAAAAGTGATCTATTAATAACTTTGACATAATCCATTGGATGACTTCTTTTGAGAACCCTAATGCACAAATCAGGTTTATTTTTCTCCAATGATGCTCTTGAGAAATAGTTTTTATTTTTCTTCTGAAGCAGTCCTCTTCTCATTTGTTATAGGGTGGGATATATACTCTTCCAAGCCATCTATCTCCTGGTGCCAGAGATTTGATACCAAGGCTGCTTGTGGTGGATCCCATGAAAAGGATGACCATACCAGAGATACGCCAACACCCATGGTTCCTACTTCATCTGCCTCGATATTTGGCGGTGCCACCACCAGATACACTTCAACAGGCCAAAAAGGTTTGTTTTTATTTTTTTAAGGGTTCTGCTTTCTTTTTGCATTTTTATGGCACACTACAGTTACAATTGATTTTGGGTGTTTTTCGAAATTCATAATTACACCCCCATGTGTTGCATATAATATAGTGCTTGTATTAATTAGTCAAATTTTTTTTTCAACCGGCGTAATGATTTTGCAGATTGATGAGGAGATTCTTCAGGAGGTGGTTAATAGGGGATTTGAAAGGGAGCCATTGGTTGAATCCCTTAAGAACAGGATACAAAACGAGGTTTGTACCATTCATTTTCACCTGCTTACCTGCCTTCCAGATTGCTTCTTATTACTATCAATTTATTTCAGGGTACTGTAACTTACTATTTGTTATTGGACAATCGTTATCGTGTTTCCACCGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGTCGGTTTGTTTTCTCTTCAATTACTGGACAATTTCAATAGTTGTCTGTCTTTAATGAAGCAATTCAGTTATTTAGCTTATATCTTATTGTTGATAAGACACATTTTTAACTTACTTTTAAATTGTATGCCTGTGTGAAATATGCAGCGGTTTCAAAATTGCTTGTATACTCTATAAATGGTATTCGTATGAGTAAACCGTGTGTGTGAAACTTATCTTTTTAGCTTGAACATAGTTGTTTATGCAGTTTTTTACTATGGAAACTGTAGGTTTTCTATTCTTGATATTATATTTTGTTTTTTATATCTTTTTAGAACAGGATACTATGAAAAGCTCTTTAATTTTGGTTTAATGATATGATTGCTCAGGATTCTGGTTTGAGCCGTATCCACTCCGGTGAAGTTGCTCCTCCAGTCAGTGGACATCGCTTTCCAGGATATATGGATTATCAAGGAGTAGGAATGAGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGACTTCAGGTGCAGTATCTTACTTTTTAGGTTTTTTTTCACATCGAAACTGGATTCCACAACGGTTTATTTTACTTGGCATCTTCTTTAATTTACTCTAGCACCAGCAACGATTCCTTGCTGTTAATGAAATAACTATTGAATGTTTGTGATTGTTTCATCTGAAAAATTGATATTTTGACGTACCTGTTTTGATAGTTACCTGTAACTGATGTCTGTAAGCTGTTGGTTCTGTTTGTTTACATGTGATAGTCTCGAGCCCAACCTCGTGAAATAATGACCGAAGTCCTCAAAGCACTGCAAGAATTGAGCGTTTGTTGGAAAAAAATTGGACCCTATAACATGAAGTGCAGATGGGCTGTTGTCATCCCTGGTCATCATGGAGGAATGGATAACAATTCTGTGCATAGTAATAATTACCTTGGAAATGACAGCATTATTGAGAATGAAGTTGTTCCTAATTCAACTGTAGTCAAGTTTGAACTGCAGGTAGTTATTCCGATAAACCCTTATCTATGTTGCATTTAGATTTAAACTAATTGTATATTTACTGGTATGGTATTAACTTTTTCGTTGTCATTCATTGATGCTTATGAGCCAGCCAGAACCCCTGCTAAACATTTGTAGTTTGAAACCATAGTTGAAGCGTCTTCAAAAAAAATTCTTCCTCCAACCTCCTATTTTTTAATACTAGACAATTTGATTGACATGTTTAAGTCATTCTTGCTATACTTTGATTCTTTGGACATGCAATCAAATAATTTTTTATAGAAATAGTGTTTGGGAATCTATTAGAAAATATGCCAACTCACATTTGACCAGGAACAAACTAGTTGTCTATGTAGAACCGGTACCATAGTTGAAGCGTCTTCAAAAAAAATTCTTCCTCCAACCTCCTATTTTTTAATACTAGACAATTTGATTGACATGTTTAAGTCATTCTTGCTATACTTTGATTCTTTGGACATGCAATCAAATAATTTTTTATAGAAATAGTGTTTGGGAATCTATTAGAAAATATGCCAACTCACATTTGACCAGGAACAAACTAGTTGTCTATGTAGAACCGGTACTTTAGATTGAAGGCGTGTCCAGTGTCCAACTTGTGTTGATGTCGGATTCTATCACGTTTTTAAATTCTTATAGGTATTTATGTGTTGATTTTAGTGTCGTATTCGGTGTACGTGCTTCATAGTTATTGCTTCTCCGTTTACAAGCTTGTGAATTAATGCTAGCAGAAAAACAAGTACACACTTCATAGTTTACTAGTATTATAGACTATAGTACTTCATAGTTTACTAGTATTATAGTTTATGTCGGAAGTTTGATACCCTCTTGTAGACGACTAATTCTTCAGTATTTTTTTCTTAAAAACATTCTCAAACCTGTGTTAATATCTTTCACAGCTGTACAAAACTCAGGAGAAATATCTGCTTGATCTTCAAAGGCTTGAGGGACCCCAGTTTCTTTTCTTGGATCTTTGTGCCGCCTTCCTTGCGCAGCTTCGCGTTCTCTAG

Protein sequence

>MS.gene57169.t1

MDGSAGPGGGNVNAFLRNYKMGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMDMEEKVRREIKILRLFMHHHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARSFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWSVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRMTIPEIRQHPWFLLHLPRYLAVPPPDTLQQAKKIDEEILQEVVNRGFEREPLVESLKNRIQNEGTVTYYLLLDNRYRVSTGYLGAEFQETMDSGLSRIHSGEVAPPVSGHRFPGYMDYQGVGMRQQFPAERKWALGLQSRAQPREIMTEVLKALQELSVCWKKIGPYNMKCRWAVVIPGHHGGMDNNSVHSNNYLGNDSIIENEVVPNSTVVKFELQLYKTQEKYLLDLQRLEGPQFLFLDLCAAFLAQLRVL