Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57207.t1 | XP_003611614.1 | 95.7 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 2.60E-125 | 458 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57207.t1 | Q9SZE8 | 56.1 | 246 | 87 | 6 | 1 | 231 | 1 | 240 | 2.6e-65 | 250.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57207.t1 | G7K3V2 | 95.7 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.9e-125 | 458.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene57207.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011734 | MS.gene57207 | PPI |
| MS.gene041894 | MS.gene57207 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57207.t1 | MTR_5g015880 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.35e-164 | 454 |
| MS.gene57207.t1 | MTR_4g095600 | 69.167 | 240 | 58 | 5 | 1 | 231 | 1 | 233 | 1.38e-110 | 317 |
| MS.gene57207.t1 | MTR_1g106420 | 57.237 | 152 | 60 | 3 | 1 | 147 | 1 | 152 | 3.07e-56 | 177 |
| MS.gene57207.t1 | MTR_7g007010 | 64.545 | 110 | 39 | 0 | 1 | 110 | 3 | 112 | 3.10e-52 | 171 |
| MS.gene57207.t1 | MTR_6g018270 | 61.818 | 110 | 42 | 0 | 1 | 110 | 3 | 112 | 7.60e-50 | 164 |
| MS.gene57207.t1 | MTR_6g453130 | 47.059 | 170 | 77 | 6 | 1 | 164 | 3 | 165 | 8.72e-46 | 152 |
| MS.gene57207.t1 | MTR_1g110840 | 51.128 | 133 | 61 | 2 | 1 | 131 | 3 | 133 | 9.52e-45 | 150 |
| MS.gene57207.t1 | MTR_6g054150 | 48.120 | 133 | 65 | 3 | 1 | 131 | 3 | 133 | 1.43e-40 | 139 |
| MS.gene57207.t1 | MTR_6g054080 | 47.368 | 133 | 66 | 3 | 1 | 131 | 3 | 133 | 2.08e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57207.t1 | AT4G37540 | 56.452 | 248 | 83 | 8 | 1 | 231 | 1 | 240 | 5.09e-83 | 248 |
| MS.gene57207.t1 | AT3G49940 | 57.031 | 256 | 76 | 10 | 1 | 231 | 1 | 247 | 1.26e-80 | 241 |
| MS.gene57207.t1 | AT5G67420 | 53.725 | 255 | 89 | 6 | 1 | 231 | 1 | 250 | 5.36e-75 | 228 |
| MS.gene57207.t1 | AT5G67420 | 53.725 | 255 | 89 | 6 | 1 | 231 | 1 | 250 | 5.36e-75 | 228 |
| MS.gene57207.t1 | AT1G67100 | 65.455 | 110 | 38 | 0 | 1 | 110 | 3 | 112 | 5.24e-52 | 168 |
| MS.gene57207.t1 | AT3G02550 | 63.636 | 110 | 40 | 0 | 1 | 110 | 3 | 112 | 1.90e-49 | 162 |
| MS.gene57207.t1 | AT1G68510 | 60.177 | 113 | 43 | 1 | 1 | 111 | 3 | 115 | 1.22e-46 | 154 |
Find 80 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCATGAACCGGACTTTC+TGG | 0.160468 | 5.3:-8766930 | None:intergenic |
| GAAACTCCGGTAAGGGTTTA+AGG | 0.160922 | 5.3:-8766819 | None:intergenic |
| ACGCGTTGACCAACGGTTTC+CGG | 0.249914 | 5.3:+8767037 | MS.gene57207:CDS |
| ATTAAAATTCTCAAACAAAA+AGG | 0.262922 | 5.3:-8767185 | None:intergenic |
| GTGGCATGACCTTGAGCTTC+AGG | 0.279564 | 5.3:-8766444 | None:intergenic |
| ACTCACTACAACCCTTTCTA+AGG | 0.331551 | 5.3:-8766383 | None:intergenic |
| GAATTCATCGACGGTGTTCC+CGG | 0.351208 | 5.3:-8767075 | None:intergenic |
| GGACTTTCTGGTTCGGATCT+CGG | 0.355586 | 5.3:-8766918 | None:intergenic |
| AAGATTATTTACCAGGTCTC+TGG | 0.363996 | 5.3:-8766533 | None:intergenic |
| AGTCCGACAGCACCGTTAAC+GGG | 0.370602 | 5.3:-8766733 | None:intergenic |
| ACGCGTTCTGTGGCGTTAAC+CGG | 0.381628 | 5.3:-8767020 | None:intergenic |
| CGGAACCCTTAAACCCTTAC+CGG | 0.384595 | 5.3:+8766813 | MS.gene57207:CDS |
| TTACCAGGTCTCTGGGGTGG+AGG | 0.387387 | 5.3:-8766525 | None:intergenic |
| TATTACGCCCTTGTATTCAA+TGG | 0.394479 | 5.3:+8766412 | MS.gene57207:CDS |
| AAGTCCGACAGCACCGTTAA+CGG | 0.413291 | 5.3:-8766734 | None:intergenic |
| AAACTCCGGTAAGGGTTTAA+GGG | 0.432686 | 5.3:-8766818 | None:intergenic |
| AAACCCTTACCGGAGTTTCT+CGG | 0.442329 | 5.3:+8766823 | MS.gene57207:CDS |
| CGGTTGCCGTGTCCTTAGAA+AGG | 0.456637 | 5.3:+8766371 | MS.gene57207:CDS |
| GCAGGTAAACGCAAGCGATC+AGG | 0.464193 | 5.3:+8766955 | MS.gene57207:CDS |
| AGATTATTTACCAGGTCTCT+GGG | 0.469772 | 5.3:-8766532 | None:intergenic |
| ATGAACCGGACTTTCTGGTT+CGG | 0.483553 | 5.3:-8766925 | None:intergenic |
| AGCACCGTTAACGGGGTTCA+CGG | 0.485215 | 5.3:-8766725 | None:intergenic |
| TGTGACGACGGTGACGTGCT+TGG | 0.492180 | 5.3:+8767107 | MS.gene57207:CDS |
| TGGCATGACCTTGAGCTTCA+GGG | 0.492713 | 5.3:-8766443 | None:intergenic |
| CGGAGGGAAATTCGCCGGCC+GGG | 0.499369 | 5.3:+8767057 | MS.gene57207:CDS |
| GTCCGGTTCATGAGTTCTGC+AGG | 0.500382 | 5.3:+8766937 | MS.gene57207:CDS |
| TACCTGCAGAACTCATGAAC+CGG | 0.501991 | 5.3:-8766939 | None:intergenic |
| AGAACCGTGAACCCCGTTAA+CGG | 0.510533 | 5.3:+8766721 | MS.gene57207:CDS |
| CCGGAGGGAAATTCGCCGGC+CGG | 0.514516 | 5.3:+8767056 | MS.gene57207:CDS |
| TACCAGGTCTCTGGGGTGGA+GGG | 0.518250 | 5.3:-8766524 | None:intergenic |
| GTGTCAAGCGGCGGTTGAAA+CGG | 0.518728 | 5.3:+8766780 | MS.gene57207:CDS |
| GGTTGCCGTGTCCTTAGAAA+GGG | 0.520856 | 5.3:+8766372 | MS.gene57207:CDS |
| CGTTAGAAATGAAAGACATA+AGG | 0.526325 | 5.3:-8766500 | None:intergenic |
| GCGTCTAAACCGAGAAACTC+CGG | 0.534500 | 5.3:-8766832 | None:intergenic |
| ACGTGCTTGGAAAGTGGGAT+GGG | 0.534695 | 5.3:+8767120 | MS.gene57207:CDS |
| GAGATCCGAACCAGAAAGTC+CGG | 0.539752 | 5.3:+8766920 | MS.gene57207:CDS |
| TCATCGACGGTGTTCCCGGC+CGG | 0.542141 | 5.3:-8767071 | None:intergenic |
| ACGGTGACGTGCTTGGAAAG+TGG | 0.543942 | 5.3:+8767114 | MS.gene57207:CDS |
| GTATCGATCCATTGAATACA+AGG | 0.548656 | 5.3:-8766420 | None:intergenic |
| GACGTGCTTGGAAAGTGGGA+TGG | 0.557120 | 5.3:+8767119 | MS.gene57207:CDS |
| TGCTTGGAAAGTGGGATGGG+AGG | 0.563212 | 5.3:+8767123 | MS.gene57207:CDS |
| TTCTGAGGAATCTGTGACGA+CGG | 0.564218 | 5.3:+8767095 | MS.gene57207:CDS |
| GTCCCTCCACCCCAGAGACC+TGG | 0.567656 | 5.3:+8766522 | MS.gene57207:CDS |
| AAACCGAGAAACTCCGGTAA+GGG | 0.570584 | 5.3:-8766826 | None:intergenic |
| TAAACCGAGAAACTCCGGTA+AGG | 0.571879 | 5.3:-8766827 | None:intergenic |
| CCGTTGGTCAACGCGTTCTG+TGG | 0.575430 | 5.3:-8767030 | None:intergenic |
| GTTTCCGGAGGGAAATTCGC+CGG | 0.577846 | 5.3:+8767052 | MS.gene57207:CDS |
| AATTTCCCTCCGGAAACCGT+TGG | 0.583258 | 5.3:-8767046 | None:intergenic |
| ACCGTTGATGACTCATCTGA+AGG | 0.585962 | 5.3:+8766865 | MS.gene57207:CDS |
| CCGGCCGGCGAATTTCCCTC+CGG | 0.587093 | 5.3:-8767056 | None:intergenic |
| AACCCCGTTAACGGTGCTGT+CGG | 0.588780 | 5.3:+8766730 | MS.gene57207:CDS |
| AGATTAAGATCAGTCGTCGC+CGG | 0.593377 | 5.3:-8766997 | None:intergenic |
| TATTTACCAGGTCTCTGGGG+TGG | 0.593625 | 5.3:-8766528 | None:intergenic |
| TCCTTCAGATGAGTCATCAA+CGG | 0.596231 | 5.3:-8766866 | None:intergenic |
| CGACGACTGATCTTAATCTC+CGG | 0.598907 | 5.3:+8767001 | MS.gene57207:CDS |
| AAGTCACGTGCAACGACGCG+CGG | 0.599047 | 5.3:+8766890 | MS.gene57207:CDS |
| CGTTGACCAACGGTTTCCGG+AGG | 0.601993 | 5.3:+8767040 | MS.gene57207:CDS |
| CCACAGAACGCGTTGACCAA+CGG | 0.603462 | 5.3:+8767030 | MS.gene57207:CDS |
| AGGGTTTAAGGGTTCCGCCA+CGG | 0.607346 | 5.3:-8766807 | None:intergenic |
| GGCATGACCTTGAGCTTCAG+GGG | 0.607961 | 5.3:-8766442 | None:intergenic |
| TACAACCCTTTCTAAGGACA+CGG | 0.609661 | 5.3:-8766377 | None:intergenic |
| CGGTGACGTGCTTGGAAAGT+GGG | 0.610792 | 5.3:+8767115 | MS.gene57207:CDS |
| ATCGATACCCCTGAAGCTCA+AGG | 0.611816 | 5.3:+8766435 | MS.gene57207:CDS |
| CAACTAGGTATGAGTTGCAA+CGG | 0.621586 | 5.3:+8766351 | None:intergenic |
| TGAAAGACATAAGGTCAGCA+CGG | 0.634887 | 5.3:-8766491 | None:intergenic |
| GTCCGACAGCACCGTTAACG+GGG | 0.636214 | 5.3:-8766732 | None:intergenic |
| GGTAAACGCAAGCGATCAGG+TGG | 0.636761 | 5.3:+8766958 | MS.gene57207:CDS |
| GTTGAAACGGTGCTCCGTGG+CGG | 0.644097 | 5.3:+8766793 | MS.gene57207:CDS |
| AAACTGGCACGTGTGTCAAG+CGG | 0.645348 | 5.3:+8766768 | MS.gene57207:CDS |
| GTTGACCAACGGTTTCCGGA+GGG | 0.646523 | 5.3:+8767041 | MS.gene57207:CDS |
| CTGGCACGTGTGTCAAGCGG+CGG | 0.654365 | 5.3:+8766771 | MS.gene57207:CDS |
| TTCAGATGAGTCATCAACGG+TGG | 0.656087 | 5.3:-8766863 | None:intergenic |
| GCGGTTGAAACGGTGCTCCG+TGG | 0.657002 | 5.3:+8766790 | MS.gene57207:CDS |
| TCTTTGTTGTTTGAAGCGTG+TGG | 0.669278 | 5.3:+8766697 | MS.gene57207:CDS |
| GATTCCTCAGAATTCATCGA+CGG | 0.685600 | 5.3:-8767084 | None:intergenic |
| TATCGATCCATTGAATACAA+GGG | 0.699979 | 5.3:-8766419 | None:intergenic |
| GATTATTTACCAGGTCTCTG+GGG | 0.703283 | 5.3:-8766531 | None:intergenic |
| AACACCGTCGATGAATTCTG+AGG | 0.704407 | 5.3:+8767080 | MS.gene57207:CDS |
| AAACTTGGCTACAAAGACAG+TGG | 0.714204 | 5.3:-8766463 | None:intergenic |
| GGAGATAACTACGTTCACGA+CGG | 0.740228 | 5.3:+8767144 | MS.gene57207:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAGATAAAGATTATTTACC+AGG | - | chr5.3:8766543-8766562 | None:intergenic | 25.0% |
| ! | TAGATGAACTAAACTAACTA+AGG | + | chr5.3:8766643-8766662 | MS.gene57207:intron | 25.0% |
| CGTTAGAAATGAAAGACATA+AGG | - | chr5.3:8766503-8766522 | None:intergenic | 30.0% | |
| TATCGATCCATTGAATACAA+GGG | - | chr5.3:8766422-8766441 | None:intergenic | 30.0% | |
| AAGATTATTTACCAGGTCTC+TGG | - | chr5.3:8766536-8766555 | None:intergenic | 35.0% | |
| AGATTATTTACCAGGTCTCT+GGG | - | chr5.3:8766535-8766554 | None:intergenic | 35.0% | |
| CAAAAAGGTTGAGAACTTTG+CGG | - | chr5.3:8767173-8767192 | None:intergenic | 35.0% | |
| TATTACGCCCTTGTATTCAA+TGG | + | chr5.3:8766412-8766431 | MS.gene57207:CDS | 35.0% | |
| TGACAAACTACTTAGAGTGA+AGG | - | chr5.3:8766588-8766607 | None:intergenic | 35.0% | |
| ! | GTATCGATCCATTGAATACA+AGG | - | chr5.3:8766423-8766442 | None:intergenic | 35.0% |
| ! | GTCTTTGTAGCCAAGTTTTT+CGG | + | chr5.3:8766468-8766487 | MS.gene57207:CDS | 35.0% |
| AAACTCCGGTAAGGGTTTAA+GGG | - | chr5.3:8766821-8766840 | None:intergenic | 40.0% | |
| AAACTTGGCTACAAAGACAG+TGG | - | chr5.3:8766466-8766485 | None:intergenic | 40.0% | |
| ACTCACTACAACCCTTTCTA+AGG | - | chr5.3:8766386-8766405 | None:intergenic | 40.0% | |
| GATTATTTACCAGGTCTCTG+GGG | - | chr5.3:8766534-8766553 | None:intergenic | 40.0% | |
| GATTCCTCAGAATTCATCGA+CGG | - | chr5.3:8767087-8767106 | None:intergenic | 40.0% | |
| TCCTTCAGATGAGTCATCAA+CGG | - | chr5.3:8766869-8766888 | None:intergenic | 40.0% | |
| TGAAAGACATAAGGTCAGCA+CGG | - | chr5.3:8766494-8766513 | None:intergenic | 40.0% | |
| ! | TACAACCCTTTCTAAGGACA+CGG | - | chr5.3:8766380-8766399 | None:intergenic | 40.0% |
| ! | TTAGAGTGAAGGTGTAACTG+TGG | - | chr5.3:8766577-8766596 | None:intergenic | 40.0% |
| !! | TCTTTGTTGTTTGAAGCGTG+TGG | + | chr5.3:8766697-8766716 | MS.gene57207:CDS | 40.0% |
| !!! | TGGTGAAGTTTTGAAGCTTC+CGG | + | chr5.3:8766978-8766997 | MS.gene57207:CDS | 40.0% |
| AAACCCTTACCGGAGTTTCT+CGG | + | chr5.3:8766823-8766842 | MS.gene57207:CDS | 45.0% | |
| AAACCGAGAAACTCCGGTAA+GGG | - | chr5.3:8766829-8766848 | None:intergenic | 45.0% | |
| AACACCGTCGATGAATTCTG+AGG | + | chr5.3:8767080-8767099 | MS.gene57207:CDS | 45.0% | |
| AACTCATGAACCGGACTTTC+TGG | - | chr5.3:8766933-8766952 | None:intergenic | 45.0% | |
| AGATTAAGATCAGTCGTCGC+CGG | - | chr5.3:8767000-8767019 | None:intergenic | 45.0% | |
| CGACGACTGATCTTAATCTC+CGG | + | chr5.3:8767001-8767020 | MS.gene57207:CDS | 45.0% | |
| GAAACTCCGGTAAGGGTTTA+AGG | - | chr5.3:8766822-8766841 | None:intergenic | 45.0% | |
| GGAGATAACTACGTTCACGA+CGG | + | chr5.3:8767144-8767163 | MS.gene57207:CDS | 45.0% | |
| TAAACCGAGAAACTCCGGTA+AGG | - | chr5.3:8766830-8766849 | None:intergenic | 45.0% | |
| TACCTGCAGAACTCATGAAC+CGG | - | chr5.3:8766942-8766961 | None:intergenic | 45.0% | |
| TTCAGATGAGTCATCAACGG+TGG | - | chr5.3:8766866-8766885 | None:intergenic | 45.0% | |
| ! | GACTTTTGTGGACAGGAAAC+TGG | + | chr5.3:8766752-8766771 | MS.gene57207:CDS | 45.0% |
| ! | TTCTGAGGAATCTGTGACGA+CGG | + | chr5.3:8767095-8767114 | MS.gene57207:CDS | 45.0% |
| !! | ACCGTTGATGACTCATCTGA+AGG | + | chr5.3:8766865-8766884 | MS.gene57207:CDS | 45.0% |
| !! | ATGAACCGGACTTTCTGGTT+CGG | - | chr5.3:8766928-8766947 | None:intergenic | 45.0% |
| AAACTGGCACGTGTGTCAAG+CGG | + | chr5.3:8766768-8766787 | MS.gene57207:CDS | 50.0% | |
| AAGTCCGACAGCACCGTTAA+CGG | - | chr5.3:8766737-8766756 | None:intergenic | 50.0% | |
| AATTTCCCTCCGGAAACCGT+TGG | - | chr5.3:8767049-8767068 | None:intergenic | 50.0% | |
| ACGTGCTTGGAAAGTGGGAT+GGG | + | chr5.3:8767120-8767139 | MS.gene57207:CDS | 50.0% | |
| AGAACCGTGAACCCCGTTAA+CGG | + | chr5.3:8766721-8766740 | MS.gene57207:CDS | 50.0% | |
| ATCGATACCCCTGAAGCTCA+AGG | + | chr5.3:8766435-8766454 | MS.gene57207:CDS | 50.0% | |
| CGGAACCCTTAAACCCTTAC+CGG | + | chr5.3:8766813-8766832 | MS.gene57207:CDS | 50.0% | |
| GAATTCATCGACGGTGTTCC+CGG | - | chr5.3:8767078-8767097 | None:intergenic | 50.0% | |
| GAGATCCGAACCAGAAAGTC+CGG | + | chr5.3:8766920-8766939 | MS.gene57207:CDS | 50.0% | |
| GCGTCTAAACCGAGAAACTC+CGG | - | chr5.3:8766835-8766854 | None:intergenic | 50.0% | |
| GGTTGCCGTGTCCTTAGAAA+GGG | + | chr5.3:8766372-8766391 | MS.gene57207:CDS | 50.0% | |
| TGGCATGACCTTGAGCTTCA+GGG | - | chr5.3:8766446-8766465 | None:intergenic | 50.0% | |
| ! | TATTTACCAGGTCTCTGGGG+TGG | - | chr5.3:8766531-8766550 | None:intergenic | 50.0% |
| !! | GGACTTTCTGGTTCGGATCT+CGG | - | chr5.3:8766921-8766940 | None:intergenic | 50.0% |
| ACGCGTTCTGTGGCGTTAAC+CGG | - | chr5.3:8767023-8767042 | None:intergenic | 55.0% | |
| ACGGTGACGTGCTTGGAAAG+TGG | + | chr5.3:8767114-8767133 | MS.gene57207:CDS | 55.0% | |
| AGCACCGTTAACGGGGTTCA+CGG | - | chr5.3:8766728-8766747 | None:intergenic | 55.0% | |
| AGGGTTTAAGGGTTCCGCCA+CGG | - | chr5.3:8766810-8766829 | None:intergenic | 55.0% | |
| AGTCCGACAGCACCGTTAAC+GGG | - | chr5.3:8766736-8766755 | None:intergenic | 55.0% | |
| CGGTGACGTGCTTGGAAAGT+GGG | + | chr5.3:8767115-8767134 | MS.gene57207:CDS | 55.0% | |
| CGGTTGCCGTGTCCTTAGAA+AGG | + | chr5.3:8766371-8766390 | MS.gene57207:CDS | 55.0% | |
| GACGTGCTTGGAAAGTGGGA+TGG | + | chr5.3:8767119-8767138 | MS.gene57207:CDS | 55.0% | |
| GCAGGTAAACGCAAGCGATC+AGG | + | chr5.3:8766955-8766974 | MS.gene57207:CDS | 55.0% | |
| GGCATGACCTTGAGCTTCAG+GGG | - | chr5.3:8766445-8766464 | None:intergenic | 55.0% | |
| GGTAAACGCAAGCGATCAGG+TGG | + | chr5.3:8766958-8766977 | MS.gene57207:CDS | 55.0% | |
| GTCAGCACGGCCGAAAAACT+TGG | - | chr5.3:8766481-8766500 | None:intergenic | 55.0% | |
| GTCCGGTTCATGAGTTCTGC+AGG | + | chr5.3:8766937-8766956 | MS.gene57207:CDS | 55.0% | |
| GTGGCATGACCTTGAGCTTC+AGG | - | chr5.3:8766447-8766466 | None:intergenic | 55.0% | |
| GTGTCAAGCGGCGGTTGAAA+CGG | + | chr5.3:8766780-8766799 | MS.gene57207:CDS | 55.0% | |
| GTTGACCAACGGTTTCCGGA+GGG | + | chr5.3:8767041-8767060 | MS.gene57207:CDS | 55.0% | |
| GTTTCCGGAGGGAAATTCGC+CGG | + | chr5.3:8767052-8767071 | MS.gene57207:CDS | 55.0% | |
| TGCTTGGAAAGTGGGATGGG+AGG | + | chr5.3:8767123-8767142 | MS.gene57207:CDS | 55.0% | |
| ! | ACGCGTTGACCAACGGTTTC+CGG | + | chr5.3:8767037-8767056 | MS.gene57207:CDS | 55.0% |
| ! | CCACAGAACGCGTTGACCAA+CGG | + | chr5.3:8767030-8767049 | MS.gene57207:CDS | 55.0% |
| ! | GCTGTCGGACTTTTGTGGAC+AGG | + | chr5.3:8766745-8766764 | MS.gene57207:CDS | 55.0% |
| !! | AACCCCGTTAACGGTGCTGT+CGG | + | chr5.3:8766730-8766749 | MS.gene57207:CDS | 55.0% |
| !!! | ACGGTGCTGTCGGACTTTTG+TGG | + | chr5.3:8766740-8766759 | MS.gene57207:CDS | 55.0% |
| AAGTCACGTGCAACGACGCG+CGG | + | chr5.3:8766890-8766909 | MS.gene57207:CDS | 60.0% | |
| CCGTTGGTCAACGCGTTCTG+TGG | - | chr5.3:8767033-8767052 | None:intergenic | 60.0% | |
| CGTTGACCAACGGTTTCCGG+AGG | + | chr5.3:8767040-8767059 | MS.gene57207:CDS | 60.0% | |
| GTCCGACAGCACCGTTAACG+GGG | - | chr5.3:8766735-8766754 | None:intergenic | 60.0% | |
| GTTGAAACGGTGCTCCGTGG+CGG | + | chr5.3:8766793-8766812 | MS.gene57207:CDS | 60.0% | |
| TGTGACGACGGTGACGTGCT+TGG | + | chr5.3:8767107-8767126 | MS.gene57207:CDS | 60.0% | |
| !! | TACCAGGTCTCTGGGGTGGA+GGG | - | chr5.3:8766527-8766546 | None:intergenic | 60.0% |
| !! | TTACCAGGTCTCTGGGGTGG+AGG | - | chr5.3:8766528-8766547 | None:intergenic | 60.0% |
| CTGGCACGTGTGTCAAGCGG+CGG | + | chr5.3:8766771-8766790 | MS.gene57207:CDS | 65.0% | |
| GCGGTTGAAACGGTGCTCCG+TGG | + | chr5.3:8766790-8766809 | MS.gene57207:CDS | 65.0% | |
| TCATCGACGGTGTTCCCGGC+CGG | - | chr5.3:8767074-8767093 | None:intergenic | 65.0% | |
| CCGGAGGGAAATTCGCCGGC+CGG | + | chr5.3:8767056-8767075 | MS.gene57207:CDS | 70.0% | |
| CCGGCCGGCGAATTTCCCTC+CGG | - | chr5.3:8767059-8767078 | None:intergenic | 70.0% | |
| CGGAGGGAAATTCGCCGGCC+GGG | + | chr5.3:8767057-8767076 | MS.gene57207:CDS | 70.0% | |
| GTCCCTCCACCCCAGAGACC+TGG | + | chr5.3:8766522-8766541 | MS.gene57207:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8766360 | 8767197 | 8766360 | ID=MS.gene57207 |
| chr5.3 | mRNA | 8766360 | 8767197 | 8766360 | ID=MS.gene57207.t1;Parent=MS.gene57207 |
| chr5.3 | exon | 8766360 | 8766543 | 8766360 | ID=MS.gene57207.t1.exon1;Parent=MS.gene57207.t1 |
| chr5.3 | CDS | 8766360 | 8766543 | 8766360 | ID=cds.MS.gene57207.t1;Parent=MS.gene57207.t1 |
| chr5.3 | exon | 8766686 | 8767197 | 8766686 | ID=MS.gene57207.t1.exon2;Parent=MS.gene57207.t1 |
| chr5.3 | CDS | 8766686 | 8767197 | 8766686 | ID=cds.MS.gene57207.t1;Parent=MS.gene57207.t1 |
| Gene Sequence |
| Protein sequence |
