Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57220.t1 | AES59281.1 | 86.7 | 301 | 18 | 1 | 1 | 301 | 17 | 295 | 3.10E-145 | 524.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57220.t1 | Q3EBZ2 | 34.9 | 332 | 171 | 11 | 5 | 301 | 3 | 324 | 9.0e-37 | 155.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57220.t1 | G7IB97 | 86.7 | 301 | 18 | 1 | 1 | 301 | 17 | 295 | 2.2e-145 | 524.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene57220 | 0.810367 | 1.19E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene57220 | 0.803939 | 2.74E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene57220 | 0.813745 | 2.19E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene57220 | 0.811322 | 7.42E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene57220 | 0.804318 | 2.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57220.t1 | MTR_1g016570 | 86.711 | 301 | 18 | 1 | 1 | 301 | 17 | 295 | 0.0 | 515 |
| MS.gene57220.t1 | MTR_2g047180 | 54.114 | 316 | 117 | 12 | 5 | 301 | 4 | 310 | 3.52e-94 | 284 |
| MS.gene57220.t1 | MTR_3g030080 | 52.038 | 319 | 119 | 9 | 2 | 301 | 4 | 307 | 1.51e-91 | 277 |
| MS.gene57220.t1 | MTR_6g018360 | 47.385 | 325 | 138 | 9 | 1 | 301 | 1 | 316 | 4.01e-81 | 252 |
| MS.gene57220.t1 | MTR_3g030360 | 48.457 | 324 | 127 | 9 | 1 | 301 | 1 | 307 | 2.71e-80 | 248 |
| MS.gene57220.t1 | MTR_3g030480 | 46.965 | 313 | 134 | 8 | 1 | 301 | 1 | 293 | 1.87e-78 | 243 |
| MS.gene57220.t1 | MTR_3g029670 | 45.373 | 335 | 138 | 9 | 1 | 301 | 1 | 324 | 6.40e-77 | 240 |
| MS.gene57220.t1 | MTR_3g030440 | 46.154 | 312 | 136 | 8 | 2 | 301 | 3 | 294 | 1.01e-76 | 238 |
| MS.gene57220.t1 | MTR_1g007260 | 45.483 | 321 | 146 | 11 | 1 | 301 | 18 | 329 | 1.19e-76 | 239 |
| MS.gene57220.t1 | MTR_3g030380 | 47.134 | 314 | 134 | 8 | 1 | 301 | 1 | 295 | 7.33e-76 | 236 |
| MS.gene57220.t1 | MTR_3g029650 | 46.708 | 319 | 130 | 6 | 1 | 301 | 1 | 297 | 5.36e-75 | 244 |
| MS.gene57220.t1 | MTR_3g029650 | 42.424 | 330 | 155 | 9 | 1 | 301 | 368 | 691 | 2.09e-64 | 216 |
| MS.gene57220.t1 | MTR_6g018315 | 46.129 | 310 | 134 | 9 | 16 | 301 | 1 | 301 | 1.62e-73 | 232 |
| MS.gene57220.t1 | MTR_6g027100 | 45.706 | 326 | 137 | 10 | 1 | 298 | 1 | 314 | 2.57e-72 | 229 |
| MS.gene57220.t1 | MTR_6g018390 | 47.040 | 321 | 135 | 10 | 1 | 301 | 1 | 306 | 2.63e-72 | 228 |
| MS.gene57220.t1 | MTR_3g029840 | 46.130 | 323 | 129 | 12 | 1 | 301 | 1 | 300 | 1.41e-70 | 223 |
| MS.gene57220.t1 | MTR_6g018400 | 45.963 | 322 | 136 | 12 | 1 | 301 | 1 | 305 | 2.71e-70 | 223 |
| MS.gene57220.t1 | MTR_3g029750 | 42.090 | 335 | 149 | 9 | 1 | 301 | 1 | 324 | 5.78e-70 | 222 |
| MS.gene57220.t1 | MTR_6g027040 | 43.769 | 329 | 145 | 9 | 1 | 301 | 1 | 317 | 9.15e-70 | 221 |
| MS.gene57220.t1 | MTR_1g026850 | 43.730 | 311 | 153 | 9 | 3 | 301 | 4 | 304 | 8.76e-66 | 211 |
| MS.gene57220.t1 | MTR_3g029950 | 45.031 | 322 | 134 | 13 | 1 | 301 | 1 | 300 | 3.20e-64 | 207 |
| MS.gene57220.t1 | MTR_3g092000 | 41.547 | 349 | 139 | 12 | 2 | 301 | 4 | 336 | 1.48e-63 | 206 |
| MS.gene57220.t1 | MTR_3g091990 | 41.916 | 334 | 150 | 11 | 1 | 302 | 3 | 324 | 1.27e-62 | 204 |
| MS.gene57220.t1 | MTR_3g029920 | 42.121 | 330 | 136 | 12 | 3 | 301 | 7 | 312 | 1.21e-60 | 198 |
| MS.gene57220.t1 | MTR_1g049170 | 40.774 | 336 | 142 | 11 | 4 | 301 | 5 | 321 | 3.71e-60 | 197 |
| MS.gene57220.t1 | MTR_3g030355 | 40.000 | 345 | 147 | 13 | 2 | 301 | 3 | 332 | 1.98e-57 | 190 |
| MS.gene57220.t1 | MTR_6g018370 | 41.158 | 311 | 109 | 8 | 3 | 298 | 2 | 253 | 8.31e-57 | 184 |
| MS.gene57220.t1 | MTR_3g030560 | 42.249 | 329 | 139 | 14 | 3 | 301 | 2 | 309 | 1.41e-55 | 185 |
| MS.gene57220.t1 | MTR_3g029870 | 41.772 | 316 | 119 | 12 | 1 | 301 | 1 | 266 | 8.39e-54 | 179 |
| MS.gene57220.t1 | MTR_3g029640 | 41.975 | 324 | 136 | 13 | 4 | 301 | 3 | 300 | 1.62e-53 | 179 |
| MS.gene57220.t1 | MTR_3g029620 | 41.358 | 324 | 148 | 14 | 4 | 301 | 2 | 309 | 9.22e-52 | 175 |
| MS.gene57220.t1 | MTR_3g030050 | 34.831 | 356 | 162 | 10 | 4 | 301 | 15 | 358 | 1.87e-51 | 175 |
| MS.gene57220.t1 | MTR_3g058460 | 38.170 | 317 | 167 | 10 | 1 | 301 | 11 | 314 | 3.84e-51 | 173 |
| MS.gene57220.t1 | MTR_3g029900 | 43.874 | 253 | 108 | 9 | 61 | 301 | 170 | 400 | 1.26e-46 | 164 |
| MS.gene57220.t1 | MTR_3g029800 | 39.571 | 326 | 139 | 15 | 4 | 301 | 3 | 298 | 3.27e-45 | 157 |
| MS.gene57220.t1 | MTR_7g005990 | 36.646 | 322 | 140 | 15 | 3 | 297 | 2 | 286 | 1.63e-39 | 142 |
| MS.gene57220.t1 | MTR_3g047980 | 40.635 | 315 | 131 | 14 | 5 | 301 | 30 | 306 | 1.16e-37 | 137 |
| MS.gene57220.t1 | MTR_1g016540 | 63.248 | 117 | 37 | 4 | 188 | 301 | 1 | 114 | 3.66e-35 | 126 |
| MS.gene57220.t1 | MTR_8g074610 | 29.394 | 330 | 188 | 10 | 5 | 301 | 25 | 342 | 1.12e-31 | 122 |
| MS.gene57220.t1 | MTR_5g042230 | 50.769 | 130 | 57 | 3 | 173 | 301 | 12 | 135 | 3.71e-29 | 110 |
| MS.gene57220.t1 | MTR_3g037710 | 35.484 | 217 | 105 | 8 | 103 | 301 | 1 | 200 | 2.06e-27 | 108 |
| MS.gene57220.t1 | MTR_3g029820 | 32.919 | 322 | 129 | 11 | 5 | 301 | 9 | 268 | 5.52e-27 | 108 |
| MS.gene57220.t1 | MTR_2g041510 | 29.912 | 341 | 166 | 12 | 5 | 301 | 6 | 317 | 1.17e-25 | 105 |
| MS.gene57220.t1 | MTR_2g041510 | 29.912 | 341 | 166 | 12 | 5 | 301 | 26 | 337 | 1.36e-25 | 105 |
| MS.gene57220.t1 | MTR_8g074640 | 29.305 | 331 | 186 | 10 | 5 | 301 | 6 | 322 | 2.65e-24 | 101 |
| MS.gene57220.t1 | MTR_1g007220 | 40.136 | 147 | 54 | 2 | 156 | 301 | 2 | 115 | 3.04e-23 | 94.4 |
| MS.gene57220.t1 | MTR_1g007250 | 51.376 | 109 | 47 | 3 | 188 | 296 | 1 | 103 | 2.03e-22 | 92.0 |
| MS.gene57220.t1 | MTR_8g032080 | 48.485 | 99 | 44 | 3 | 116 | 208 | 3 | 100 | 1.16e-19 | 87.8 |
| MS.gene57220.t1 | MTR_5g078450 | 56.338 | 71 | 31 | 0 | 231 | 301 | 5 | 75 | 7.76e-19 | 81.3 |
| MS.gene57220.t1 | MTR_6g092570 | 27.445 | 317 | 186 | 12 | 5 | 301 | 8 | 300 | 2.26e-18 | 84.7 |
| MS.gene57220.t1 | MTR_8g035995 | 46.078 | 102 | 42 | 2 | 197 | 295 | 1 | 92 | 7.04e-17 | 76.6 |
| MS.gene57220.t1 | MTR_6g009100 | 42.537 | 134 | 47 | 5 | 4 | 127 | 3 | 116 | 1.18e-16 | 75.1 |
| MS.gene57220.t1 | MTR_5g079830 | 24.765 | 319 | 196 | 10 | 5 | 301 | 6 | 302 | 2.74e-16 | 79.0 |
| MS.gene57220.t1 | MTR_1g007230 | 48.235 | 85 | 35 | 3 | 2 | 78 | 5 | 88 | 1.15e-14 | 68.9 |
| MS.gene57220.t1 | MTR_6g009620 | 43.617 | 94 | 39 | 5 | 83 | 167 | 38 | 126 | 1.34e-14 | 69.7 |
| MS.gene57220.t1 | MTR_6g075925 | 69.767 | 43 | 13 | 0 | 1 | 43 | 1 | 43 | 7.99e-14 | 66.6 |
| MS.gene57220.t1 | MTR_6g018420 | 72.973 | 37 | 10 | 0 | 1 | 37 | 1 | 37 | 4.72e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57220.t1 | AT2G17030 | 34.743 | 331 | 173 | 11 | 5 | 301 | 3 | 324 | 1.24e-41 | 149 |
| MS.gene57220.t1 | AT2G17036 | 29.970 | 337 | 176 | 12 | 5 | 301 | 2 | 318 | 2.10e-30 | 119 |
| MS.gene57220.t1 | AT2G17036 | 29.970 | 337 | 176 | 12 | 5 | 301 | 3 | 319 | 2.66e-30 | 118 |
| MS.gene57220.t1 | AT5G60060 | 28.527 | 319 | 199 | 14 | 4 | 301 | 9 | 319 | 9.37e-21 | 91.7 |
| MS.gene57220.t1 | AT5G24040 | 27.900 | 319 | 198 | 16 | 6 | 304 | 4 | 310 | 2.04e-19 | 88.2 |
| MS.gene57220.t1 | AT3G25750 | 28.707 | 317 | 178 | 13 | 1 | 299 | 1 | 287 | 3.75e-19 | 87.0 |
| MS.gene57220.t1 | AT3G25750 | 27.103 | 321 | 192 | 12 | 1 | 299 | 1 | 301 | 1.74e-18 | 85.1 |
| MS.gene57220.t1 | AT1G65770 | 27.083 | 336 | 188 | 12 | 4 | 308 | 2 | 311 | 4.01e-17 | 81.3 |
| MS.gene57220.t1 | AT2G26160 | 24.000 | 325 | 199 | 12 | 1 | 301 | 1 | 301 | 3.93e-12 | 66.6 |
Find 73 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTTATGTACTTGAATT+AGG | 0.191945 | 1.4:+5886106 | MS.gene57220:CDS |
| TTGATGAGAAGGAGAGTAAA+TGG | 0.206024 | 1.4:+5886569 | MS.gene57220:CDS |
| AAACCAACGGAGATGAATTT+TGG | 0.212262 | 1.4:+5886269 | MS.gene57220:CDS |
| ATGGGTTGATTTGATGAGTT+TGG | 0.251492 | 1.4:+5886588 | MS.gene57220:CDS |
| TTAACCACAAGTTCATATTT+AGG | 0.261634 | 1.4:-5886427 | None:intergenic |
| ATTTGATGAGTTTGGGAGAT+AGG | 0.289011 | 1.4:+5886596 | MS.gene57220:CDS |
| AAATATGAACTTGTGGTTAA+TGG | 0.323243 | 1.4:+5886430 | MS.gene57220:CDS |
| GAGGAGTGGGTGTAAGAGTT+TGG | 0.328183 | 1.4:-5886032 | None:intergenic |
| GTGGACATTTATGAGTGTTT+AGG | 0.334870 | 1.4:+5886499 | MS.gene57220:CDS |
| CCAATTCCATCAATCATATA+AGG | 0.345857 | 1.4:-5886349 | None:intergenic |
| CGGACAATTATTGTTGGACT+TGG | 0.356140 | 1.4:+5886373 | MS.gene57220:CDS |
| GTTGTTGATGGGAGATTGAT+AGG | 0.367917 | 1.4:-5885906 | None:intergenic |
| TGGAAACTTGAGGGTTAGAT+TGG | 0.369886 | 1.4:-5885879 | None:intergenic |
| ATCAGATGTAGAAGCTCCTT+TGG | 0.370393 | 1.4:-5885773 | None:intergenic |
| TTTCAACGAGACTGATTTCT+TGG | 0.370571 | 1.4:-5886248 | None:intergenic |
| TTGAGGGTTAGATTGGGAAT+TGG | 0.401176 | 1.4:-5885872 | None:intergenic |
| CCTTATATGATTGATGGAAT+TGG | 0.407615 | 1.4:+5886349 | MS.gene57220:CDS |
| GATGAGGAAGAAAGAGCGTT+TGG | 0.413225 | 1.4:-5885951 | None:intergenic |
| TCAGATTTGTGTGTTTCTAA+AGG | 0.427259 | 1.4:+5886662 | MS.gene57220:CDS |
| TACTGATATGTCTATGTACT+TGG | 0.428125 | 1.4:+5886300 | MS.gene57220:CDS |
| CGAGTTCAACGTCGAGTCGT+TGG | 0.433682 | 1.4:-5885799 | None:intergenic |
| TCAGGGTAAACATAGTCATA+TGG | 0.438455 | 1.4:-5886163 | None:intergenic |
| TTGTTGATGGGAGATTGATA+GGG | 0.442668 | 1.4:-5885905 | None:intergenic |
| GAGTTCAACGTCGAGTCGTT+GGG | 0.443077 | 1.4:-5885798 | None:intergenic |
| TGATGAGAAGGAGAGTAAAT+GGG | 0.446912 | 1.4:+5886570 | MS.gene57220:CDS |
| GGGCGGCCTTATATGATTGA+TGG | 0.452306 | 1.4:+5886343 | MS.gene57220:CDS |
| AACCACCACTTCAACGCCCT+TGG | 0.454393 | 1.4:+5885975 | MS.gene57220:CDS |
| TGGGTTGATTTGATGAGTTT+GGG | 0.459847 | 1.4:+5886589 | MS.gene57220:CDS |
| GGTTAGATTGGGAATTGGTA+AGG | 0.460418 | 1.4:-5885867 | None:intergenic |
| TGTGTTTAGGTTTGATGAGA+AGG | 0.463451 | 1.4:+5886558 | MS.gene57220:CDS |
| AAATTGAGTGGTGTTGTTGA+TGG | 0.466840 | 1.4:-5885918 | None:intergenic |
| TTTGATGAGTTTGGGAGATA+GGG | 0.474756 | 1.4:+5886597 | MS.gene57220:CDS |
| GATCGCATGACTTCGATGAC+TGG | 0.480649 | 1.4:+5886395 | MS.gene57220:CDS |
| ATAGGGGTGTGGAAACTTGA+GGG | 0.481501 | 1.4:-5885888 | None:intergenic |
| ATTGGTCGGACAATTATTGT+TGG | 0.482444 | 1.4:+5886367 | MS.gene57220:CDS |
| TCAGATGTAGAAGCTCCTTT+GGG | 0.486819 | 1.4:-5885772 | None:intergenic |
| CATCAATGGCAGAGTCAGAC+TGG | 0.493551 | 1.4:+5885741 | None:intergenic |
| ACACCAAAATTCATCTCCGT+TGG | 0.512605 | 1.4:-5886272 | None:intergenic |
| TCCGATCAACTTGTTCCGCA+TGG | 0.522258 | 1.4:+5885834 | MS.gene57220:CDS |
| AACCAAGGGCGTTGAAGTGG+TGG | 0.538102 | 1.4:-5885977 | None:intergenic |
| ATGGGAGATTGATAGGGGTG+TGG | 0.538525 | 1.4:-5885899 | None:intergenic |
| TATGAACTTGTGGTTAATGG+TGG | 0.543129 | 1.4:+5886433 | MS.gene57220:CDS |
| GATAGGGGTGTGGAAACTTG+AGG | 0.545526 | 1.4:-5885889 | None:intergenic |
| AATTGAGTGGTGTTGTTGAT+GGG | 0.546505 | 1.4:-5885917 | None:intergenic |
| GGAAACTTGAGGGTTAGATT+GGG | 0.553565 | 1.4:-5885878 | None:intergenic |
| TGAGGGCGCGTTGCTGCGAG+TGG | 0.554191 | 1.4:+5886480 | MS.gene57220:CDS |
| ATCAACCAAGGGCGTTGAAG+TGG | 0.559025 | 1.4:-5885980 | None:intergenic |
| ATGATTGATATGAGAGGAGT+GGG | 0.567475 | 1.4:-5886045 | None:intergenic |
| TGAACTTGTGGTTAATGGTG+GGG | 0.569319 | 1.4:+5886435 | MS.gene57220:CDS |
| TGTTGATGGGAGATTGATAG+GGG | 0.579514 | 1.4:-5885904 | None:intergenic |
| GATGAGATGATTGATATGAG+AGG | 0.579863 | 1.4:-5886051 | None:intergenic |
| GAACTTGTGGTTAATGGTGG+GGG | 0.582058 | 1.4:+5886436 | MS.gene57220:CDS |
| ATGAACTTGTGGTTAATGGT+GGG | 0.584883 | 1.4:+5886434 | MS.gene57220:CDS |
| GAGTAATTCTGATCAACCAA+GGG | 0.589964 | 1.4:-5885991 | None:intergenic |
| GTTGAAGTGGTGGTTTGATG+AGG | 0.590656 | 1.4:-5885967 | None:intergenic |
| ACCACCTAAATATGAACTTG+TGG | 0.597935 | 1.4:+5886423 | MS.gene57220:CDS |
| AGACTGGTCTTCACTCCCAA+AGG | 0.598232 | 1.4:+5885757 | MS.gene57220:CDS |
| TCACTAAAATCGAGAGCGTG+AGG | 0.598776 | 1.4:-5886085 | None:intergenic |
| AGAGCGTGAGGGAAAAGAAG+AGG | 0.600055 | 1.4:-5886073 | None:intergenic |
| ACTGATATGTCTATGTACTT+GGG | 0.602971 | 1.4:+5886301 | MS.gene57220:CDS |
| ACCACAAGTTCATATTTAGG+TGG | 0.605610 | 1.4:-5886424 | None:intergenic |
| TGAGTAATTCTGATCAACCA+AGG | 0.612564 | 1.4:-5885992 | None:intergenic |
| AAAATTCTTAGTGGAGAGTG+AGG | 0.612751 | 1.4:+5886462 | MS.gene57220:CDS |
| CACTAAAATCGAGAGCGTGA+GGG | 0.616468 | 1.4:-5886084 | None:intergenic |
| TCAGTCTCGTTGAAAACCAA+CGG | 0.621836 | 1.4:+5886256 | MS.gene57220:CDS |
| GCCATGCGGAACAAGTTGAT+CGG | 0.628441 | 1.4:-5885835 | None:intergenic |
| GGAGAGAGAGTGAAATTGAG+TGG | 0.633283 | 1.4:-5885930 | None:intergenic |
| ATATGATTGATGGAATTGGT+CGG | 0.636318 | 1.4:+5886353 | MS.gene57220:CDS |
| ATAAACGTGCCAATAACAAG+AGG | 0.645995 | 1.4:-5886220 | None:intergenic |
| GATGATTGATATGAGAGGAG+TGG | 0.652451 | 1.4:-5886046 | None:intergenic |
| AAATTCTTAGTGGAGAGTGA+GGG | 0.668174 | 1.4:+5886463 | MS.gene57220:CDS |
| AGAATTACTCAAAACCCTAA+CGG | 0.674771 | 1.4:+5886004 | MS.gene57220:CDS |
| TAAGGAAGAAGAGCGCCATG+CGG | 0.759001 | 1.4:-5885849 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAGGATTAATGTGTTT+AGG | + | chr1.4:5886545-5886564 | MS.gene57220:CDS | 20.0% |
| ! | AAATATGAACTTGTGGTTAA+TGG | + | chr1.4:5886430-5886449 | MS.gene57220:CDS | 25.0% |
| ! | GAACTTTATGTACTTGAATT+AGG | + | chr1.4:5886106-5886125 | MS.gene57220:CDS | 25.0% |
| ! | TTAACCACAAGTTCATATTT+AGG | - | chr1.4:5886430-5886449 | None:intergenic | 25.0% |
| !!! | TGTTTAGGTTTTGATTACTT+CGG | + | chr1.4:5886514-5886533 | MS.gene57220:CDS | 25.0% |
| ACTGATATGTCTATGTACTT+GGG | + | chr1.4:5886301-5886320 | MS.gene57220:CDS | 30.0% | |
| AGAATTACTCAAAACCCTAA+CGG | + | chr1.4:5886004-5886023 | MS.gene57220:CDS | 30.0% | |
| ATATGATTGATGGAATTGGT+CGG | + | chr1.4:5886353-5886372 | MS.gene57220:CDS | 30.0% | |
| CCAATTCCATCAATCATATA+AGG | - | chr1.4:5886352-5886371 | None:intergenic | 30.0% | |
| CCTTATATGATTGATGGAAT+TGG | + | chr1.4:5886349-5886368 | MS.gene57220:CDS | 30.0% | |
| TACTGATATGTCTATGTACT+TGG | + | chr1.4:5886300-5886319 | MS.gene57220:CDS | 30.0% | |
| ! | ACTTCGGTAAGAATGTTTTA+AGG | + | chr1.4:5886530-5886549 | MS.gene57220:CDS | 30.0% |
| ! | GAAAAAAAGCCTCTTGTTAT+TGG | + | chr1.4:5886211-5886230 | MS.gene57220:CDS | 30.0% |
| AAAATTCTTAGTGGAGAGTG+AGG | + | chr1.4:5886462-5886481 | MS.gene57220:CDS | 35.0% | |
| AAATTCTTAGTGGAGAGTGA+GGG | + | chr1.4:5886463-5886482 | MS.gene57220:CDS | 35.0% | |
| ACCACAAGTTCATATTTAGG+TGG | - | chr1.4:5886427-5886446 | None:intergenic | 35.0% | |
| ACCACCTAAATATGAACTTG+TGG | + | chr1.4:5886423-5886442 | MS.gene57220:CDS | 35.0% | |
| ATAAACGTGCCAATAACAAG+AGG | - | chr1.4:5886223-5886242 | None:intergenic | 35.0% | |
| ATGAACTTGTGGTTAATGGT+GGG | + | chr1.4:5886434-5886453 | MS.gene57220:CDS | 35.0% | |
| ATGATTGATATGAGAGGAGT+GGG | - | chr1.4:5886048-5886067 | None:intergenic | 35.0% | |
| ATTGGTCGGACAATTATTGT+TGG | + | chr1.4:5886367-5886386 | MS.gene57220:CDS | 35.0% | |
| ATTTGATGAGTTTGGGAGAT+AGG | + | chr1.4:5886596-5886615 | MS.gene57220:CDS | 35.0% | |
| GAGTAATTCTGATCAACCAA+GGG | - | chr1.4:5885994-5886013 | None:intergenic | 35.0% | |
| GATGAGATGATTGATATGAG+AGG | - | chr1.4:5886054-5886073 | None:intergenic | 35.0% | |
| GTGGACATTTATGAGTGTTT+AGG | + | chr1.4:5886499-5886518 | MS.gene57220:CDS | 35.0% | |
| TATGAACTTGTGGTTAATGG+TGG | + | chr1.4:5886433-5886452 | MS.gene57220:CDS | 35.0% | |
| TCAGGGTAAACATAGTCATA+TGG | - | chr1.4:5886166-5886185 | None:intergenic | 35.0% | |
| TGAGTAATTCTGATCAACCA+AGG | - | chr1.4:5885995-5886014 | None:intergenic | 35.0% | |
| TGATGAGAAGGAGAGTAAAT+GGG | + | chr1.4:5886570-5886589 | MS.gene57220:CDS | 35.0% | |
| TTGATGAGAAGGAGAGTAAA+TGG | + | chr1.4:5886569-5886588 | MS.gene57220:CDS | 35.0% | |
| TTTGATGAGTTTGGGAGATA+GGG | + | chr1.4:5886597-5886616 | MS.gene57220:CDS | 35.0% | |
| ! | AAACCAACGGAGATGAATTT+TGG | + | chr1.4:5886269-5886288 | MS.gene57220:CDS | 35.0% |
| ! | TGTGTTTAGGTTTGATGAGA+AGG | + | chr1.4:5886558-5886577 | MS.gene57220:CDS | 35.0% |
| ! | TTGTTGATGGGAGATTGATA+GGG | - | chr1.4:5885908-5885927 | None:intergenic | 35.0% |
| ! | TTTCAACGAGACTGATTTCT+TGG | - | chr1.4:5886251-5886270 | None:intergenic | 35.0% |
| !! | AAATTGAGTGGTGTTGTTGA+TGG | - | chr1.4:5885921-5885940 | None:intergenic | 35.0% |
| !! | AATTGAGTGGTGTTGTTGAT+GGG | - | chr1.4:5885920-5885939 | None:intergenic | 35.0% |
| !! | ATGGGTTGATTTGATGAGTT+TGG | + | chr1.4:5886588-5886607 | MS.gene57220:CDS | 35.0% |
| !! | TGGGTTGATTTGATGAGTTT+GGG | + | chr1.4:5886589-5886608 | MS.gene57220:CDS | 35.0% |
| !!! | AAGAGTTTGGTTTTACCGTT+AGG | - | chr1.4:5886022-5886041 | None:intergenic | 35.0% |
| !!! | AGAGTTTGGTTTTACCGTTA+GGG | - | chr1.4:5886021-5886040 | None:intergenic | 35.0% |
| !!! | GAGATAGGGTTTTGTTTTTG+GGG | + | chr1.4:5886611-5886630 | MS.gene57220:CDS | 35.0% |
| !!! | GGAGATAGGGTTTTGTTTTT+GGG | + | chr1.4:5886610-5886629 | MS.gene57220:CDS | 35.0% |
| ACACCAAAATTCATCTCCGT+TGG | - | chr1.4:5886275-5886294 | None:intergenic | 40.0% | |
| ATCAGATGTAGAAGCTCCTT+TGG | - | chr1.4:5885776-5885795 | None:intergenic | 40.0% | |
| CGGACAATTATTGTTGGACT+TGG | + | chr1.4:5886373-5886392 | MS.gene57220:CDS | 40.0% | |
| GATGATTGATATGAGAGGAG+TGG | - | chr1.4:5886049-5886068 | None:intergenic | 40.0% | |
| GGAAACTTGAGGGTTAGATT+GGG | - | chr1.4:5885881-5885900 | None:intergenic | 40.0% | |
| GGTTAGATTGGGAATTGGTA+AGG | - | chr1.4:5885870-5885889 | None:intergenic | 40.0% | |
| TCAGATGTAGAAGCTCCTTT+GGG | - | chr1.4:5885775-5885794 | None:intergenic | 40.0% | |
| TCAGTCTCGTTGAAAACCAA+CGG | + | chr1.4:5886256-5886275 | MS.gene57220:CDS | 40.0% | |
| TGAACTTGTGGTTAATGGTG+GGG | + | chr1.4:5886435-5886454 | MS.gene57220:CDS | 40.0% | |
| TGGAAACTTGAGGGTTAGAT+TGG | - | chr1.4:5885882-5885901 | None:intergenic | 40.0% | |
| TGGGGGCAAAAAATTCTTAG+TGG | + | chr1.4:5886453-5886472 | MS.gene57220:CDS | 40.0% | |
| TTGAGGGTTAGATTGGGAAT+TGG | - | chr1.4:5885875-5885894 | None:intergenic | 40.0% | |
| ! | GAGACATCTGCGTTTTCAAA+GGG | + | chr1.4:5886323-5886342 | MS.gene57220:CDS | 40.0% |
| ! | GTTGTTGATGGGAGATTGAT+AGG | - | chr1.4:5885909-5885928 | None:intergenic | 40.0% |
| ! | TGACAGCAACGATCTTTTCA+GGG | - | chr1.4:5886183-5886202 | None:intergenic | 40.0% |
| ! | TGTTGATGGGAGATTGATAG+GGG | - | chr1.4:5885907-5885926 | None:intergenic | 40.0% |
| !!! | AGGGTTTTGTTTTTGGGGAA+TGG | + | chr1.4:5886616-5886635 | MS.gene57220:CDS | 40.0% |
| !!! | GGGAGATAGGGTTTTGTTTT+TGG | + | chr1.4:5886609-5886628 | MS.gene57220:CDS | 40.0% |
| GAACTTGTGGTTAATGGTGG+GGG | + | chr1.4:5886436-5886455 | MS.gene57220:CDS | 45.0% | |
| GGAGAGAGAGTGAAATTGAG+TGG | - | chr1.4:5885933-5885952 | None:intergenic | 45.0% | |
| GTTGAAGTGGTGGTTTGATG+AGG | - | chr1.4:5885970-5885989 | None:intergenic | 45.0% | |
| ! | ACATCTGCGTTTTCAAAGGG+CGG | + | chr1.4:5886326-5886345 | MS.gene57220:CDS | 45.0% |
| ! | ATAGGGGTGTGGAAACTTGA+GGG | - | chr1.4:5885891-5885910 | None:intergenic | 45.0% |
| ! | CACTAAAATCGAGAGCGTGA+GGG | - | chr1.4:5886087-5886106 | None:intergenic | 45.0% |
| ! | GGAGACATCTGCGTTTTCAA+AGG | + | chr1.4:5886322-5886341 | MS.gene57220:CDS | 45.0% |
| ! | GTGACAGCAACGATCTTTTC+AGG | - | chr1.4:5886184-5886203 | None:intergenic | 45.0% |
| ! | TCACTAAAATCGAGAGCGTG+AGG | - | chr1.4:5886088-5886107 | None:intergenic | 45.0% |
| !! | GATGAGGAAGAAAGAGCGTT+TGG | - | chr1.4:5885954-5885973 | None:intergenic | 45.0% |
| AGAGCGTGAGGGAAAAGAAG+AGG | - | chr1.4:5886076-5886095 | None:intergenic | 50.0% | |
| ATGGGAGATTGATAGGGGTG+TGG | - | chr1.4:5885902-5885921 | None:intergenic | 50.0% | |
| GAGGAGTGGGTGTAAGAGTT+TGG | - | chr1.4:5886035-5886054 | None:intergenic | 50.0% | |
| GAGTTCAACGTCGAGTCGTT+GGG | - | chr1.4:5885801-5885820 | None:intergenic | 50.0% | |
| GATCGCATGACTTCGATGAC+TGG | + | chr1.4:5886395-5886414 | MS.gene57220:CDS | 50.0% | |
| ! | GATAGGGGTGTGGAAACTTG+AGG | - | chr1.4:5885892-5885911 | None:intergenic | 50.0% |
| ! | GGGCGGCCTTATATGATTGA+TGG | + | chr1.4:5886343-5886362 | MS.gene57220:CDS | 50.0% |
| ! | TCCGATCAACTTGTTCCGCA+TGG | + | chr1.4:5885834-5885853 | MS.gene57220:CDS | 50.0% |
| !! | AGACTGGTCTTCACTCCCAA+AGG | + | chr1.4:5885757-5885776 | MS.gene57220:CDS | 50.0% |
| !! | ATCAACCAAGGGCGTTGAAG+TGG | - | chr1.4:5885983-5886002 | None:intergenic | 50.0% |
| !! | GCCATGCGGAACAAGTTGAT+CGG | - | chr1.4:5885838-5885857 | None:intergenic | 50.0% |
| !! | TAAGGAAGAAGAGCGCCATG+CGG | - | chr1.4:5885852-5885871 | None:intergenic | 50.0% |
| AACCACCACTTCAACGCCCT+TGG | + | chr1.4:5885975-5885994 | MS.gene57220:CDS | 55.0% | |
| CGAGTTCAACGTCGAGTCGT+TGG | - | chr1.4:5885802-5885821 | None:intergenic | 55.0% | |
| !! | AACCAAGGGCGTTGAAGTGG+TGG | - | chr1.4:5885980-5885999 | None:intergenic | 55.0% |
| ! | TGAGGGCGCGTTGCTGCGAG+TGG | + | chr1.4:5886480-5886499 | MS.gene57220:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5885746 | 5886681 | 5885746 | ID=MS.gene57220 |
| chr1.4 | mRNA | 5885746 | 5886681 | 5885746 | ID=MS.gene57220.t1;Parent=MS.gene57220 |
| chr1.4 | exon | 5885746 | 5886681 | 5885746 | ID=MS.gene57220.t1.exon1;Parent=MS.gene57220.t1 |
| chr1.4 | CDS | 5885746 | 5886681 | 5885746 | ID=cds.MS.gene57220.t1;Parent=MS.gene57220.t1 |
| Gene Sequence |
| Protein sequence |
