AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051332


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051332.t1 MTR_4g094302 98.246 114 2 0 1 114 78 191 4.51e-80 233
MS.gene051332.t1 MTR_4g094302 90.244 82 5 1 1 79 78 159 1.10e-47 150
MS.gene051332.t1 MTR_3g096400 36.641 131 63 4 2 113 78 207 2.54e-21 84.3
MS.gene051332.t1 MTR_8g093790 42.969 128 39 7 2 114 77 185 2.41e-20 81.3
MS.gene051332.t1 MTR_8g059170 41.379 87 45 2 1 87 89 169 7.89e-18 77.0
MS.gene051332.t1 MTR_7g005280 40.506 79 39 1 2 80 88 158 2.58e-17 75.1
MS.gene051332.t1 MTR_3g070040 38.043 92 53 2 2 93 81 168 2.09e-16 73.2
MS.gene051332.t1 MTR_2g079990 40.230 87 44 3 1 87 91 169 4.61e-16 72.4
MS.gene051332.t1 MTR_2157s0010 42.169 83 44 2 4 82 86 168 4.68e-16 71.6
MS.gene051332.t1 MTR_2g080010 39.286 84 46 1 4 82 93 176 5.10e-16 72.4
MS.gene051332.t1 MTR_3g070030 41.975 81 42 2 2 82 95 170 6.88e-16 72.0
MS.gene051332.t1 MTR_3g109340 35.789 95 49 2 2 96 98 180 9.24e-16 71.6
MS.gene051332.t1 MTR_3g109340 35.789 95 48 2 2 96 98 179 1.13e-15 71.2
MS.gene051332.t1 MTR_2g062730 38.272 81 41 2 2 82 89 160 1.80e-15 70.9
MS.gene051332.t1 MTR_4g089135 35.417 96 45 2 4 82 93 188 2.77e-15 70.1
MS.gene051332.t1 MTR_7g100990 44.304 79 40 2 5 82 90 165 3.70e-15 69.7
MS.gene051332.t1 MTR_3g088110 43.038 79 39 2 4 82 85 157 4.10e-15 69.3
MS.gene051332.t1 MTR_1g008740 39.506 81 42 1 2 82 104 177 5.39e-15 69.7
MS.gene051332.t1 MTR_1g008740 39.506 81 42 1 2 82 90 163 5.54e-15 69.3
MS.gene051332.t1 MTR_8g024480 36.905 84 48 2 2 82 94 175 1.04e-14 68.9
MS.gene051332.t1 MTR_7g070140 48.276 58 30 0 1 58 39 96 1.53e-14 65.5
MS.gene051332.t1 MTR_6g012670 43.210 81 40 3 2 82 96 170 2.90e-14 67.4
MS.gene051332.t1 MTR_2g093810 39.474 76 44 1 4 79 92 165 3.47e-14 67.0
MS.gene051332.t1 MTR_6g032770 33.036 112 71 1 2 113 94 201 3.54e-14 67.4
MS.gene051332.t1 MTR_8g094580 37.975 79 44 2 4 82 31 104 4.79e-14 65.9
MS.gene051332.t1 MTR_1g096430 38.272 81 40 2 2 82 86 156 5.27e-14 66.6
MS.gene051332.t1 MTR_8g094580 37.975 79 44 2 4 82 85 158 6.28e-14 66.2
MS.gene051332.t1 MTR_2g064090 41.975 81 40 2 2 82 84 157 6.46e-14 66.6
MS.gene051332.t1 MTR_4g108760 39.506 81 43 2 2 82 93 167 6.99e-14 66.2
MS.gene051332.t1 MTR_8g467490 35.294 85 52 1 1 82 89 173 1.05e-13 65.9
MS.gene051332.t1 MTR_3g096920 39.241 79 42 2 4 82 85 157 1.29e-13 65.5
MS.gene051332.t1 MTR_8g099750 34.568 81 52 1 2 82 88 167 1.76e-13 64.3
MS.gene051332.t1 MTR_4g035590 35.802 81 41 2 2 82 87 156 1.85e-13 65.1
MS.gene051332.t1 MTR_0036s0150 38.272 81 41 3 2 82 84 155 1.92e-13 65.5
MS.gene051332.t1 MTR_1g090723 35.802 81 44 2 2 82 87 159 2.35e-13 65.1
MS.gene051332.t1 MTR_2g079990 30.275 109 52 2 1 87 91 197 3.05e-13 64.7
MS.gene051332.t1 MTR_5g041940 38.272 81 46 2 2 82 79 155 3.14e-13 63.9
MS.gene051332.t1 MTR_2g064470 33.333 99 59 2 2 100 85 176 3.48e-13 64.3
MS.gene051332.t1 MTR_2g078700 37.037 81 47 1 2 82 99 175 4.29e-13 64.3
MS.gene051332.t1 MTR_7g105170 39.286 84 45 3 1 82 85 164 4.89e-13 63.5
MS.gene051332.t1 MTR_7g011130 32.353 102 58 2 2 94 95 194 5.08e-13 63.9
MS.gene051332.t1 MTR_6g011860 38.824 85 48 2 1 82 90 173 5.19e-13 63.9
MS.gene051332.t1 MTR_4g075980 36.585 82 40 2 2 82 91 161 5.26e-13 63.5
MS.gene051332.t1 MTR_4g081870 38.272 81 46 2 2 82 85 161 5.32e-13 63.5
MS.gene051332.t1 MTR_5g014300 34.737 95 48 2 2 91 84 169 6.51e-13 63.5
MS.gene051332.t1 MTR_7g011120 34.375 96 58 2 2 94 84 177 6.93e-13 63.5
MS.gene051332.t1 MTR_5g040420 33.333 84 54 1 1 82 89 172 1.43e-12 62.8
MS.gene051332.t1 MTR_8g093580 34.146 82 46 2 2 83 84 157 2.17e-12 62.4
MS.gene051332.t1 MTR_6g084430 30.172 116 68 3 2 114 81 186 2.28e-12 62.0
MS.gene051332.t1 MTR_4g101680 37.037 81 41 2 2 82 86 156 2.30e-12 62.0
MS.gene051332.t1 MTR_4g036030 34.568 81 43 2 2 82 86 156 2.35e-12 62.0
MS.gene051332.t1 MTR_3g093040 33.333 84 48 2 2 85 186 261 2.43e-12 62.0
MS.gene051332.t1 MTR_3g435150 38.272 81 44 2 2 82 92 166 2.56e-12 62.0
MS.gene051332.t1 MTR_7g085220 36.364 88 47 2 4 84 86 171 2.61e-12 62.0
MS.gene051332.t1 MTR_8g063550 35.366 82 45 2 2 83 84 157 2.67e-12 62.0
MS.gene051332.t1 MTR_1g069805 32.955 88 49 1 2 89 86 163 2.87e-12 61.6
MS.gene051332.t1 MTR_8g063550 35.366 82 45 2 2 83 84 157 3.69e-12 61.6
MS.gene051332.t1 MTR_7g085260 33.721 86 51 2 2 85 93 174 4.00e-12 61.6
MS.gene051332.t1 MTR_1g090723 35.802 81 43 3 2 82 87 158 4.47e-12 61.6
MS.gene051332.t1 MTR_3g116070 40.580 69 41 0 2 70 100 168 4.89e-12 61.2
MS.gene051332.t1 MTR_1g090723 35.802 81 43 3 2 82 87 158 4.91e-12 61.2
MS.gene051332.t1 MTR_8g076110 34.568 81 43 2 2 82 85 155 5.15e-12 60.8
MS.gene051332.t1 MTR_3g098810 35.632 87 54 1 2 86 88 174 5.49e-12 60.5
MS.gene051332.t1 MTR_5g012080 33.333 81 46 2 2 82 86 158 5.73e-12 60.8
MS.gene051332.t1 MTR_8g063550 35.366 82 45 2 2 83 84 157 6.84e-12 60.8
MS.gene051332.t1 MTR_3g096140 35.366 82 45 2 2 83 85 158 8.19e-12 60.5
MS.gene051332.t1 MTR_3g096140 35.366 82 45 2 2 83 64 137 8.58e-12 60.5
MS.gene051332.t1 MTR_3g096140 35.366 82 45 2 2 83 85 158 9.31e-12 60.1
MS.gene051332.t1 MTR_7g097090 36.250 80 41 1 2 81 86 155 1.98e-11 59.3
MS.gene051332.t1 MTR_4g098630 36.782 87 48 2 2 87 84 164 2.19e-11 59.3
MS.gene051332.t1 MTR_5g021710 35.802 81 42 2 2 82 87 157 2.21e-11 59.3
MS.gene051332.t1 MTR_6g477900 34.146 82 46 2 2 83 84 157 2.52e-11 58.5
MS.gene051332.t1 MTR_2g086880 37.349 83 37 2 2 84 95 162 3.15e-11 58.9
MS.gene051332.t1 MTR_2g086880 37.349 83 37 2 2 84 95 162 3.52e-11 58.9
MS.gene051332.t1 MTR_5g076850 37.037 81 43 2 2 82 84 156 4.82e-11 58.5
MS.gene051332.t1 MTR_1g090720 36.585 82 50 1 2 83 120 199 5.19e-11 58.5
MS.gene051332.t1 MTR_3g064580 33.333 81 47 2 2 82 84 157 7.14e-11 58.2
MS.gene051332.t1 MTR_2g086690 37.975 79 45 2 2 80 86 160 9.40e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051332.t1 AT5G64530 59.016 122 37 3 1 113 70 187 7.40e-36 121
MS.gene051332.t1 AT2G24430 42.169 83 41 1 2 84 92 167 1.96e-17 75.9
MS.gene051332.t1 AT2G24430 42.169 83 41 1 2 84 92 167 1.96e-17 75.9
MS.gene051332.t1 AT3G15500 42.529 87 42 3 1 87 89 167 1.88e-16 73.2
MS.gene051332.t1 AT5G13180 45.570 79 36 1 2 80 87 158 1.91e-16 72.4
MS.gene051332.t1 AT1G52890 41.379 87 43 3 1 87 89 167 4.88e-16 72.4
MS.gene051332.t1 AT4G27410 41.379 87 43 3 1 87 89 167 7.03e-16 71.6
MS.gene051332.t1 AT1G76420 37.931 87 47 1 2 88 98 177 8.20e-16 71.6
MS.gene051332.t1 AT4G27410 39.080 87 45 2 1 87 106 184 8.50e-16 71.6
MS.gene051332.t1 AT1G69490 45.000 80 38 3 4 82 87 161 2.25e-15 70.1
MS.gene051332.t1 AT2G33480 39.080 87 45 2 2 88 31 109 3.07e-15 68.6
MS.gene051332.t1 AT1G77450 38.947 95 45 3 2 89 86 174 5.48e-15 68.6
MS.gene051332.t1 AT5G64530 54.545 55 21 1 1 55 70 120 7.18e-15 66.6
MS.gene051332.t1 AT1G01720 34.783 115 65 4 2 113 83 190 7.20e-15 68.9
MS.gene051332.t1 AT2G33480 39.080 87 45 2 2 88 88 166 7.56e-15 68.6
MS.gene051332.t1 AT1G56010 33.036 112 63 3 2 113 29 128 8.21e-15 68.2
MS.gene051332.t1 AT3G04060 36.752 117 60 5 2 113 96 203 9.15e-15 68.9
MS.gene051332.t1 AT1G61110 38.636 88 47 3 2 83 92 178 9.49e-15 68.6
MS.gene051332.t1 AT3G04070 39.759 83 46 2 4 82 88 170 1.12e-14 68.6
MS.gene051332.t1 AT5G61430 40.741 81 42 2 2 82 29 103 1.19e-14 68.2
MS.gene051332.t1 AT5G07680 40.741 81 42 2 2 82 93 167 1.40e-14 68.2
MS.gene051332.t1 AT5G07680 40.741 81 42 2 2 82 79 153 1.47e-14 68.2
MS.gene051332.t1 AT1G56010 35.354 99 59 2 2 100 96 189 1.50e-14 68.2
MS.gene051332.t1 AT5G61430 40.741 81 42 2 2 82 92 166 1.55e-14 68.2
MS.gene051332.t1 AT5G39610 33.628 113 63 4 2 114 96 196 1.56e-14 67.8
MS.gene051332.t1 AT2G33480 37.931 87 44 2 2 88 88 164 2.31e-14 67.0
MS.gene051332.t1 AT1G79580 38.272 81 40 2 2 82 96 166 2.96e-14 67.4
MS.gene051332.t1 AT1G79580 38.272 81 40 2 2 82 96 166 2.96e-14 67.4
MS.gene051332.t1 AT1G79580 38.272 81 40 2 2 82 96 166 2.96e-14 67.4
MS.gene051332.t1 AT1G79580 38.272 81 40 2 2 82 96 166 2.96e-14 67.4
MS.gene051332.t1 AT1G79580 38.272 81 40 2 2 82 96 166 2.96e-14 67.4
MS.gene051332.t1 AT3G15510 32.110 109 58 3 4 101 95 198 5.20e-14 67.0
MS.gene051332.t1 AT5G18270 40.244 82 44 2 2 83 97 173 7.47e-14 66.2
MS.gene051332.t1 AT5G18270 40.244 82 44 2 2 83 97 173 7.62e-14 66.2
MS.gene051332.t1 AT5G53950 36.957 92 54 1 2 93 93 180 1.01e-13 66.2
MS.gene051332.t1 AT5G63790 39.241 79 44 2 4 82 128 202 1.27e-13 65.5
MS.gene051332.t1 AT5G04410 39.024 82 40 3 2 82 87 159 1.29e-13 65.9
MS.gene051332.t1 AT3G10500 38.272 81 42 2 2 82 87 159 1.38e-13 65.9
MS.gene051332.t1 AT5G63790 39.241 79 44 2 4 82 138 212 1.41e-13 65.5
MS.gene051332.t1 AT2G46770 34.091 88 49 2 2 82 95 180 1.80e-13 65.5
MS.gene051332.t1 AT4G10350 37.975 79 41 2 2 80 41 111 2.15e-13 64.7
MS.gene051332.t1 AT4G10350 37.975 79 41 2 2 80 88 158 2.32e-13 65.1
MS.gene051332.t1 AT5G08790 38.272 81 46 2 2 82 83 159 3.81e-13 63.9
MS.gene051332.t1 AT4G17980 36.145 83 49 1 2 84 84 162 4.18e-13 63.5
MS.gene051332.t1 AT3G12910 33.708 89 52 2 1 82 97 185 4.61e-13 63.9
MS.gene051332.t1 AT4G17980 36.145 83 49 1 2 84 84 162 5.68e-13 63.5
MS.gene051332.t1 AT1G33280 35.802 81 41 2 2 82 87 156 6.16e-13 63.5
MS.gene051332.t1 AT2G17040 36.585 82 40 2 2 82 82 152 6.52e-13 63.2
MS.gene051332.t1 AT4G36160 38.272 81 40 2 2 82 89 159 6.67e-13 63.9
MS.gene051332.t1 AT4G36160 38.272 81 40 2 2 82 89 159 6.67e-13 63.9
MS.gene051332.t1 AT4G36160 38.272 81 40 2 2 82 93 163 7.05e-13 63.5
MS.gene051332.t1 AT1G62700 35.802 81 42 2 2 82 86 156 7.10e-13 63.5
MS.gene051332.t1 AT1G62700 35.802 81 42 2 2 82 86 156 7.10e-13 63.5
MS.gene051332.t1 AT3G12977 31.429 105 65 2 2 106 41 138 7.35e-13 62.8
MS.gene051332.t1 AT3G04070 35.354 99 44 3 4 82 88 186 8.84e-13 63.5
MS.gene051332.t1 AT3G12977 32.990 97 58 2 2 98 94 183 9.02e-13 62.8
MS.gene051332.t1 AT3G18400 39.286 84 36 3 2 82 81 152 9.38e-13 63.2
MS.gene051332.t1 AT1G71930 34.783 92 50 2 2 93 88 169 9.57e-13 63.2
MS.gene051332.t1 AT1G71930 34.783 92 50 2 2 93 88 169 9.57e-13 63.2
MS.gene051332.t1 AT3G10480 36.585 82 45 2 2 83 138 212 1.41e-12 62.8
MS.gene051332.t1 AT3G15170 38.462 78 44 1 2 79 96 169 1.43e-12 62.8
MS.gene051332.t1 AT3G10480 36.585 82 45 2 2 83 105 179 1.72e-12 62.8
MS.gene051332.t1 AT1G32770 32.941 85 51 2 2 82 95 177 2.18e-12 62.4
MS.gene051332.t1 AT3G61910 33.708 89 50 2 2 83 90 176 2.48e-12 62.0
MS.gene051332.t1 AT1G12260 34.568 81 43 2 2 82 86 156 2.54e-12 62.0
MS.gene051332.t1 AT1G12260 34.568 81 43 2 2 82 86 156 2.71e-12 62.0
MS.gene051332.t1 AT5G46590 38.554 83 45 2 2 84 84 160 2.86e-12 61.6
MS.gene051332.t1 AT3G10480 36.585 82 44 2 2 83 105 178 3.02e-12 62.0
MS.gene051332.t1 AT3G49530 34.940 83 47 3 2 84 91 166 4.20e-12 61.6
MS.gene051332.t1 AT2G02450 37.805 82 42 2 1 82 126 198 4.21e-12 61.6
MS.gene051332.t1 AT3G49530 34.940 83 47 3 2 84 91 166 4.96e-12 61.2
MS.gene051332.t1 AT2G02450 37.805 82 42 2 1 82 126 198 5.13e-12 61.2
MS.gene051332.t1 AT4G35580 37.778 90 44 3 2 89 87 166 5.62e-12 61.2
MS.gene051332.t1 AT4G35580 37.778 90 44 3 2 89 87 166 5.67e-12 61.2
MS.gene051332.t1 AT4G35580 37.778 90 44 3 2 89 87 166 5.75e-12 61.2
MS.gene051332.t1 AT2G18060 35.802 81 42 2 2 82 88 158 5.99e-12 61.2
MS.gene051332.t1 AT2G18060 35.802 81 42 2 2 82 88 158 5.99e-12 61.2
MS.gene051332.t1 AT2G18060 35.443 79 41 2 4 82 2 70 6.55e-12 60.5
MS.gene051332.t1 AT4G28530 35.714 84 44 1 2 85 102 175 7.27e-12 60.8
MS.gene051332.t1 AT5G62380 34.568 81 43 2 2 82 86 156 1.48e-11 60.1
MS.gene051332.t1 AT5G62380 34.568 81 43 2 2 82 86 156 1.48e-11 60.1
MS.gene051332.t1 AT3G10490 35.366 82 46 2 2 83 5 79 1.50e-11 60.1
MS.gene051332.t1 AT3G10490 35.366 82 46 2 2 83 5 79 1.50e-11 60.1
MS.gene051332.t1 AT3G10490 35.366 82 46 2 2 83 105 179 1.67e-11 59.3
MS.gene051332.t1 AT1G26870 32.075 106 63 2 1 103 91 190 1.86e-11 59.7
MS.gene051332.t1 AT3G10490 35.366 82 46 2 2 83 105 179 1.94e-11 59.7
MS.gene051332.t1 AT3G17730 35.366 82 45 2 2 83 84 157 3.07e-11 58.5
MS.gene051332.t1 AT3G29035 38.095 84 46 2 2 85 100 177 3.76e-11 58.5
MS.gene051332.t1 AT2G43000 32.927 82 48 2 1 82 15 89 5.31e-11 57.4
MS.gene051332.t1 AT1G33060 34.483 87 49 2 2 88 102 180 5.68e-11 58.5
MS.gene051332.t1 AT1G33060 34.483 87 49 2 2 88 102 180 5.79e-11 58.5
MS.gene051332.t1 AT5G66300 34.568 81 44 2 2 82 91 162 8.08e-11 57.8
MS.gene051332.t1 AT2G43000 32.927 82 48 2 1 82 93 167 9.14e-11 57.4

Find 21 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTTGCATCATCTAATT+TGG 0.155320 4.1:+19348014 None:intergenic
AAGAATATACTAACTGATTT+TGG 0.171613 4.1:+19348363 None:intergenic
CATTAGGTGCTTCTCCAATA+TGG 0.269862 4.1:+19348475 None:intergenic
AAATATTATGTGTTCCATAT+TGG 0.324951 4.1:-19348489 MS.gene051332:CDS
CAATTGGTTTGGTTACCATT+AGG 0.336748 4.1:+19348459 None:intergenic
GAATGACTAACAGTGGTTAT+TGG 0.338084 4.1:-19348575 MS.gene051332:CDS
TGGGACAGAGCTATCTTGTT+TGG 0.375974 4.1:-19348081 MS.gene051332:CDS
ATATTCTTGCATTATCCAAT+TGG 0.402397 4.1:+19348443 None:intergenic
CTTGCATTATCCAATTGGTT+TGG 0.405683 4.1:+19348448 None:intergenic
CTAATGGTAACCAAACCAAT+TGG 0.465135 4.1:-19348458 MS.gene051332:CDS
CAGTGGTTATTGGATGCCAA+TGG 0.509528 4.1:-19348565 MS.gene051332:CDS
AGCTCAAGCAATAAGAGAGT+TGG 0.517821 4.1:-19348519 MS.gene051332:CDS
CATATTGGAGAAGCACCTAA+TGG 0.525131 4.1:-19348474 MS.gene051332:CDS
AGTGGTTATTGGATGCCAAT+GGG 0.539139 4.1:-19348564 MS.gene051332:CDS
ACTTGTTCTTCCATTCCCAT+TGG 0.540129 4.1:+19348549 None:intergenic
GAAGATGATCAAGATGGAGA+TGG 0.565312 4.1:-19348101 MS.gene051332:CDS
AAGATGATCAAGATGGAGAT+GGG 0.567207 4.1:-19348100 MS.gene051332:CDS
TTATTGGATGCCAATGGGAA+TGG 0.569720 4.1:-19348559 MS.gene051332:CDS
TTTGGATGATGATCTGCTAG+AGG 0.602702 4.1:+19348398 None:intergenic
CGTGATGAAGATGATCAAGA+TGG 0.626157 4.1:-19348107 MS.gene051332:CDS
CAAAATAGAATGACTAACAG+TGG 0.651988 4.1:-19348582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAAAGATATTTAAAATGT+CGG + chr4.1:19348369-19348388 None:intergenic 15.0%
!! AAATATTATGTGTTCCATAT+TGG - chr4.1:19348112-19348131 MS.gene051332:CDS 20.0%
!!! AAGAATATACTAACTGATTT+TGG + chr4.1:19348241-19348260 None:intergenic 20.0%
!!! ACAAAGATATTTAAAATGTC+GGG + chr4.1:19348368-19348387 None:intergenic 20.0%
!!! TATTTTTCCTTTGATTTAGT+GGG - chr4.1:19348451-19348470 MS.gene051332:CDS 20.0%
!!! TTATTTTTCCTTTGATTTAG+TGG - chr4.1:19348450-19348469 MS.gene051332:CDS 20.0%
! ATATTCTTGCATTATCCAAT+TGG + chr4.1:19348161-19348180 None:intergenic 25.0%
!!! TTTTGGTTGTGATTTTCTTT+TGG + chr4.1:19348224-19348243 None:intergenic 25.0%
AAGATGATCAAGATGGAGAT+GGG - chr4.1:19348501-19348520 MS.gene051332:CDS 35.0%
CATATCACCCACTAAATCAA+AGG + chr4.1:19348461-19348480 None:intergenic 35.0%
CTAATGGTAACCAAACCAAT+TGG - chr4.1:19348143-19348162 MS.gene051332:intron 35.0%
CTTGCATTATCCAATTGGTT+TGG + chr4.1:19348156-19348175 None:intergenic 35.0%
!! AATGTGCTGAGTTTTGTCAT+TGG + chr4.1:19348305-19348324 None:intergenic 35.0%
!! CAATTGGTTTGGTTACCATT+AGG + chr4.1:19348145-19348164 None:intergenic 35.0%
ACTTGTTCTTCCATTCCCAT+TGG + chr4.1:19348055-19348074 None:intergenic 40.0%
AGCTCAAGCAATAAGAGAGT+TGG - chr4.1:19348082-19348101 MS.gene051332:CDS 40.0%
AGTGGTTATTGGATGCCAAT+GGG - chr4.1:19348037-19348056 MS.gene051332:CDS 40.0%
CATTAGGTGCTTCTCCAATA+TGG + chr4.1:19348129-19348148 None:intergenic 40.0%
CGTGATGAAGATGATCAAGA+TGG - chr4.1:19348494-19348513 MS.gene051332:CDS 40.0%
GAAGATGATCAAGATGGAGA+TGG - chr4.1:19348500-19348519 MS.gene051332:CDS 40.0%
TTATTGGATGCCAATGGGAA+TGG - chr4.1:19348042-19348061 MS.gene051332:CDS 40.0%
TTTGGATGATGATCTGCTAG+AGG + chr4.1:19348206-19348225 None:intergenic 40.0%
!! CATATTGGAGAAGCACCTAA+TGG - chr4.1:19348127-19348146 MS.gene051332:CDS 40.0%
ACTTGCAATACCCCTCTTCT+CGG + chr4.1:19348333-19348352 None:intergenic 45.0%
CAGTGGTTATTGGATGCCAA+TGG - chr4.1:19348036-19348055 MS.gene051332:CDS 45.0%
TGGGACAGAGCTATCTTGTT+TGG - chr4.1:19348520-19348539 MS.gene051332:CDS 45.0%
!! ACATTAAGTGCCGAGAAGAG+GGG - chr4.1:19348320-19348339 MS.gene051332:intron 45.0%
!! CACATTAAGTGCCGAGAAGA+GGG - chr4.1:19348319-19348338 MS.gene051332:intron 45.0%
!! GCACATTAAGTGCCGAGAAG+AGG - chr4.1:19348318-19348337 MS.gene051332:intron 50.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 19348028 19348595 19348028 ID=MS.gene051332
chr4.1 mRNA 19348028 19348595 19348028 ID=MS.gene051332.t1;Parent=MS.gene051332
chr4.1 exon 19348377 19348595 19348377 ID=MS.gene051332.t1.exon1;Parent=MS.gene051332.t1
chr4.1 CDS 19348377 19348595 19348377 ID=cds.MS.gene051332.t1;Parent=MS.gene051332.t1
chr4.1 exon 19348028 19348153 19348028 ID=MS.gene051332.t1.exon2;Parent=MS.gene051332.t1
chr4.1 CDS 19348028 19348153 19348028 ID=cds.MS.gene051332.t1;Parent=MS.gene051332.t1
Gene Sequence

>MS.gene051332

ATGACTAACAGTGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTGTAACAAGCTCAAGCAATAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATATTGGAGAAGCACCTAATGGTAACCAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCTTCCTCTAGCAGATCATCATCCAAAAGAAAATCACAACCAAAATCAGTTAGTATATTCTTAATGTATTATTTAGTACATGAAATTTTTTATGTCAAATAGTCCAATGACAAAACTCAGCACATTAAGTGCCGAGAAGAGGGGTATTGCAAGTTTGAACTTACGTCCCGACATTTTAAATATCTTTGTAAATGTTTATCATCTGAGTTGCGTATACATGATTAATTTTTTTTTATTTAATATTGATTTTATTATTTTTCCTTTGATTTAGTGGGTGATATGTCGAGTTTATGAGCGTGATGAAGATGATCAAGATGGAGATGGGACAGAGCTATCTTGTTTGGATGAAGTTTTCTTGTCATTAGATGATCTTGATGAAGTAAGCTTGCCAAATTAG

Protein sequence

>MS.gene051332.t1

MTNSGYWMPMGMEEQVVTSSSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRLSDSASSSSRSSSKRKSQPKSWVICRVYERDEDDQDGDGTELSCLDEVFLSLDDLDEVSLPN