AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57411

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57411.t1 MTR_8g093460 98.710 155 2 0 4 158 317 471 2.02e-112 330
MS.gene57411.t1 MTR_3g095920 82.051 156 28 0 3 158 329 484 7.54e-95 285
MS.gene57411.t1 MTR_8g104645 52.903 155 65 2 4 158 143 289 8.21e-53 172
MS.gene57411.t1 MTR_0618s0020 52.632 152 64 2 6 157 1 144 8.70e-53 167
MS.gene57411.t1 MTR_8g042910 55.696 158 62 2 4 161 384 533 8.42e-52 174
MS.gene57411.t1 MTR_8g104655 52.258 155 66 2 4 158 312 458 1.04e-50 170
MS.gene57411.t1 MTR_3g010770 53.797 158 65 2 4 161 347 496 1.52e-50 170
MS.gene57411.t1 MTR_1g083520 57.516 153 60 3 4 156 297 444 1.86e-50 169
MS.gene57411.t1 MTR_0458s0030 53.846 156 60 3 4 157 86 231 3.09e-50 163
MS.gene57411.t1 MTR_1g088040 53.846 156 60 3 4 157 86 231 3.09e-50 163
MS.gene57411.t1 MTR_8g023310 51.613 155 67 2 4 158 360 506 3.10e-50 169
MS.gene57411.t1 MTR_2g044880 51.613 155 67 2 4 158 296 442 4.67e-50 168
MS.gene57411.t1 MTR_4g087980 50.633 158 70 2 4 161 287 436 4.68e-50 168
MS.gene57411.t1 MTR_4g025670 51.923 156 66 3 5 160 261 407 3.12e-49 165
MS.gene57411.t1 MTR_2g044810 50.633 158 70 3 4 161 237 386 5.32e-49 164
MS.gene57411.t1 MTR_7g108875 56.209 153 59 3 4 156 336 480 7.00e-49 166
MS.gene57411.t1 MTR_1g088225 53.503 157 61 3 4 158 327 473 1.49e-48 164
MS.gene57411.t1 MTR_1g088020 53.503 157 61 3 4 158 327 473 1.52e-48 164
MS.gene57411.t1 MTR_2g044810 50.633 158 70 3 4 161 306 455 1.94e-48 164
MS.gene57411.t1 MTR_7g108890 54.248 153 62 2 4 156 334 478 2.60e-48 164
MS.gene57411.t1 MTR_4g087970 49.367 158 72 2 4 161 288 437 4.13e-48 162
MS.gene57411.t1 MTR_7g108905 50.980 153 67 2 4 156 327 471 4.41e-48 163
MS.gene57411.t1 MTR_4g025690 55.484 155 60 4 4 158 285 430 6.90e-48 162
MS.gene57411.t1 MTR_2g044660 50.000 154 66 2 5 158 409 551 8.68e-48 163
MS.gene57411.t1 MTR_4g025730 51.613 155 64 2 4 158 283 426 2.35e-47 160
MS.gene57411.t1 MTR_3g091380 51.266 158 69 2 4 161 368 517 3.88e-47 161
MS.gene57411.t1 MTR_7g108900 52.866 157 62 3 4 158 332 478 3.98e-47 160
MS.gene57411.t1 MTR_7g112580 51.899 158 59 2 4 161 322 462 5.22e-47 160
MS.gene57411.t1 MTR_1g054880 52.288 153 65 2 4 156 330 474 5.59e-45 155
MS.gene57411.t1 MTR_7g050980 49.032 155 71 2 4 158 324 470 7.72e-45 154
MS.gene57411.t1 MTR_3g008720 49.359 156 71 2 3 158 296 443 1.44e-44 153
MS.gene57411.t1 MTR_3g033690 49.359 156 71 2 3 158 295 442 1.61e-44 153
MS.gene57411.t1 MTR_3g008640 49.677 155 70 2 3 157 296 442 1.75e-44 153
MS.gene57411.t1 MTR_7g053360 49.677 155 70 2 3 157 296 442 2.68e-44 152
MS.gene57411.t1 MTR_7g050870 49.032 155 71 2 4 158 323 469 2.86e-44 153
MS.gene57411.t1 MTR_1g008140 49.367 158 72 3 4 161 378 527 3.49e-44 153
MS.gene57411.t1 MTR_3g008700 48.718 156 72 2 3 158 296 443 5.15e-44 152
MS.gene57411.t1 MTR_4g035980 50.955 157 65 3 3 157 308 454 5.21e-44 152
MS.gene57411.t1 MTR_7g050950 47.742 155 73 2 4 158 323 469 7.46e-44 152
MS.gene57411.t1 MTR_4g124520 46.835 158 76 3 4 161 291 440 7.66e-44 151
MS.gene57411.t1 MTR_4g124550 48.701 154 71 3 5 158 367 512 1.45e-43 152
MS.gene57411.t1 MTR_8g023150 50.323 155 66 4 4 158 355 498 1.53e-43 151
MS.gene57411.t1 MTR_8g042900 49.677 155 66 3 4 158 357 499 1.86e-43 151
MS.gene57411.t1 MTR_2g436040 45.806 155 75 3 4 158 313 458 3.72e-42 148
MS.gene57411.t1 MTR_1g083510 43.396 159 80 2 3 161 352 500 1.27e-39 141
MS.gene57411.t1 MTR_3g010780 50.980 153 63 5 4 156 350 490 4.29e-39 139
MS.gene57411.t1 MTR_7g112590 42.767 159 83 2 3 161 351 501 4.35e-39 139
MS.gene57411.t1 MTR_7g110560 45.806 155 76 3 4 158 321 467 2.95e-38 137
MS.gene57411.t1 MTR_4g005170 40.385 156 85 2 3 158 343 490 1.86e-37 135
MS.gene57411.t1 MTR_1g083490 40.385 156 85 2 3 158 343 490 2.27e-37 134
MS.gene57411.t1 MTR_1g083470 39.744 156 86 2 3 158 338 485 3.69e-37 134
MS.gene57411.t1 MTR_1g083500 39.744 156 86 2 3 158 338 485 3.69e-37 134
MS.gene57411.t1 MTR_1g086210 43.871 155 79 2 4 158 334 480 5.47e-37 133
MS.gene57411.t1 MTR_7g110440 46.667 150 72 3 9 158 345 486 1.19e-36 132
MS.gene57411.t1 MTR_1g086190 44.516 155 78 3 4 158 336 482 4.19e-36 131
MS.gene57411.t1 MTR_2g436050 42.581 155 80 3 4 158 331 476 1.15e-35 130
MS.gene57411.t1 MTR_4g120290 41.892 148 77 3 10 157 345 483 1.16e-35 130
MS.gene57411.t1 MTR_7g110490 47.333 150 71 3 9 158 345 486 1.79e-35 129
MS.gene57411.t1 MTR_7g110510 47.333 150 71 3 9 158 345 486 1.79e-35 129
MS.gene57411.t1 MTR_4g120280 41.216 148 78 3 10 157 345 483 3.32e-35 129
MS.gene57411.t1 MTR_4g005180 39.103 156 87 2 3 158 325 472 4.89e-35 128
MS.gene57411.t1 MTR_7g107180 41.935 155 77 3 5 158 83 225 1.25e-33 120
MS.gene57411.t1 MTR_8g088610 40.523 153 83 2 6 158 150 294 1.88e-33 121
MS.gene57411.t1 MTR_2g105560 43.226 155 75 4 5 158 115 257 2.95e-33 120
MS.gene57411.t1 MTR_6g012800 39.490 157 76 2 5 161 98 235 1.88e-30 112
MS.gene57411.t1 MTR_5g083620 43.125 160 75 6 4 159 127 274 2.85e-30 112
MS.gene57411.t1 MTR_7g110420 43.333 150 79 3 9 158 345 488 4.55e-30 114
MS.gene57411.t1 MTR_8g104580 40.252 159 74 5 5 158 275 417 6.85e-30 113
MS.gene57411.t1 MTR_6g088810 40.764 157 68 4 10 161 175 311 2.91e-29 110
MS.gene57411.t1 MTR_7g011530 38.562 153 75 2 5 157 98 231 3.71e-29 108
MS.gene57411.t1 MTR_8g102380 38.217 157 72 4 10 161 175 311 8.41e-28 105
MS.gene57411.t1 MTR_7g092780 35.220 159 84 3 5 157 172 317 1.05e-27 106
MS.gene57411.t1 MTR_8g102380 38.217 157 72 4 10 161 175 311 1.61e-27 105
MS.gene57411.t1 MTR_7g102600 36.875 160 80 4 4 158 180 323 1.11e-23 95.5
MS.gene57411.t1 MTR_5g095490 36.709 158 76 3 3 156 149 286 2.70e-23 94.4
MS.gene57411.t1 MTR_1g086540 33.333 162 84 3 4 161 137 278 4.52e-22 90.9
MS.gene57411.t1 MTR_4g051810 37.500 144 72 3 15 158 122 247 1.21e-21 89.4
MS.gene57411.t1 MTR_1g033050 38.168 131 66 2 28 158 124 239 1.58e-21 89.0
MS.gene57411.t1 MTR_6g024165 35.443 158 78 4 3 156 125 262 1.59e-21 89.0
MS.gene57411.t1 MTR_5g088300 36.735 147 75 4 15 161 122 250 5.88e-21 87.4
MS.gene57411.t1 MTR_7g111560 34.194 155 97 2 4 158 322 471 1.07e-20 88.2
MS.gene57411.t1 MTR_5g083590 36.552 145 68 4 10 153 94 215 1.81e-20 85.5
MS.gene57411.t1 MTR_7g110430 33.333 150 58 3 9 158 345 452 4.36e-20 86.3
MS.gene57411.t1 MTR_5g088290 36.054 147 76 3 15 161 134 262 1.28e-19 84.0
MS.gene57411.t1 MTR_5g012600 33.951 162 82 4 5 161 151 292 1.39e-19 84.0
MS.gene57411.t1 MTR_8g036225 35.821 134 72 2 28 161 137 256 1.91e-19 83.6
MS.gene57411.t1 MTR_5g093970 34.899 149 75 4 15 161 134 262 2.22e-19 83.2
MS.gene57411.t1 MTR_6g042660 32.278 158 80 4 6 158 116 251 2.97e-19 82.8
MS.gene57411.t1 MTR_6g042690 32.500 160 81 3 4 158 121 258 9.02e-19 81.6
MS.gene57411.t1 MTR_4g124740 34.545 165 79 6 3 161 138 279 2.19e-18 80.5
MS.gene57411.t1 MTR_5g088280 34.014 147 79 3 15 161 124 252 2.79e-18 80.1
MS.gene57411.t1 MTR_2g039530 32.934 167 92 7 4 159 134 291 3.48e-14 68.9
MS.gene57411.t1 MTR_4g074290 29.747 158 88 5 5 157 152 291 1.54e-13 67.4
MS.gene57411.t1 MTR_6g025590 33.654 104 66 2 3 104 135 237 5.92e-13 64.7
MS.gene57411.t1 MTR_2g033970 31.897 116 63 2 42 157 177 276 7.62e-13 65.1
MS.gene57411.t1 MTR_2g073390 29.299 157 88 5 5 156 152 290 1.30e-12 64.7
MS.gene57411.t1 MTR_0009s0350 28.571 154 87 5 8 156 155 290 1.71e-12 64.3
MS.gene57411.t1 MTR_0009s0340 28.571 154 87 5 8 156 155 290 1.71e-12 64.3
MS.gene57411.t1 MTR_2g436600 27.922 154 85 5 10 157 139 272 2.33e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57411.t1 AT5G09760 79.355 155 32 0 4 158 324 478 2.81e-92 278
MS.gene57411.t1 AT5G09760 79.355 155 32 0 4 158 350 504 8.45e-92 278
MS.gene57411.t1 AT5G64640 76.774 155 35 1 4 157 374 528 1.59e-82 254
MS.gene57411.t1 AT1G53830 53.548 155 64 2 4 158 358 504 2.49e-53 177
MS.gene57411.t1 AT3G10720 55.063 158 63 2 4 161 31 180 2.55e-53 170
MS.gene57411.t1 AT5G27870 54.839 155 62 2 4 158 334 480 9.39e-53 178
MS.gene57411.t1 AT3G05610 54.194 155 63 2 4 158 337 483 1.94e-52 176
MS.gene57411.t1 AT3G14310 52.903 155 65 2 4 158 363 509 5.48e-52 174
MS.gene57411.t1 AT5G04970 55.063 158 63 2 4 161 392 541 1.08e-51 174
MS.gene57411.t1 AT3G10720 55.063 158 63 2 4 161 387 536 7.55e-51 171
MS.gene57411.t1 AT4G02330 55.696 158 62 4 4 161 343 492 8.05e-51 171
MS.gene57411.t1 AT2G26450 52.632 152 64 2 7 158 386 529 1.76e-50 171
MS.gene57411.t1 AT5G49180 50.323 155 69 2 4 158 342 488 2.78e-49 167
MS.gene57411.t1 AT3G60730 51.613 155 67 2 4 158 290 436 3.77e-49 166
MS.gene57411.t1 AT4G33230 52.632 152 64 2 7 158 381 524 6.48e-49 166
MS.gene57411.t1 AT1G02810 53.165 158 66 3 4 161 349 498 1.31e-48 165
MS.gene57411.t1 AT4G33220 52.866 157 65 4 4 160 173 320 3.40e-47 158
MS.gene57411.t1 AT2G47550 53.548 155 64 4 7 161 333 479 5.69e-47 160
MS.gene57411.t1 AT3G43270 51.266 158 69 3 4 161 296 445 6.71e-47 159
MS.gene57411.t1 AT3G06830 48.701 154 71 2 5 158 341 486 8.17e-47 160
MS.gene57411.t1 AT2G43050 50.323 155 60 3 4 158 296 433 1.13e-46 159
MS.gene57411.t1 AT4G33220 52.866 157 65 4 4 160 294 441 2.33e-46 158
MS.gene57411.t1 AT5G04960 48.101 158 70 2 4 161 339 484 5.49e-46 158
MS.gene57411.t1 AT5G20860 48.734 158 72 3 5 161 280 429 1.33e-45 156
MS.gene57411.t1 AT1G11580 50.000 152 68 2 7 158 331 474 1.49e-45 156
MS.gene57411.t1 AT1G11580 50.000 152 68 2 7 158 352 495 1.72e-45 157
MS.gene57411.t1 AT5G20860 48.734 158 72 3 5 161 308 457 2.10e-45 156
MS.gene57411.t1 AT3G05620 51.266 158 60 2 4 161 322 462 4.49e-45 155
MS.gene57411.t1 AT2G26440 48.734 158 73 3 4 161 319 468 4.83e-45 155
MS.gene57411.t1 AT1G11370 47.097 155 74 2 4 158 127 273 9.40e-45 149
MS.gene57411.t1 AT2G45220 49.359 156 68 3 4 158 284 429 1.01e-44 154
MS.gene57411.t1 AT4G00190 49.057 159 62 4 7 161 251 394 2.73e-44 152
MS.gene57411.t1 AT3G10710 47.468 158 71 2 4 161 337 482 4.35e-44 152
MS.gene57411.t1 AT3G59010 47.742 155 63 2 4 158 309 445 6.61e-44 152
MS.gene57411.t1 AT1G53840 49.677 155 65 3 4 158 362 503 8.07e-44 152
MS.gene57411.t1 AT1G23200 48.387 155 63 2 4 158 334 471 8.68e-44 152
MS.gene57411.t1 AT4G15980 45.806 155 76 2 4 158 474 620 1.13e-43 153
MS.gene57411.t1 AT4G15980 45.806 155 76 2 4 158 484 630 1.40e-43 153
MS.gene57411.t1 AT5G51490 49.057 159 73 2 3 161 304 454 1.71e-42 148
MS.gene57411.t1 AT3G49220 47.468 158 75 2 4 161 367 516 2.93e-42 148
MS.gene57411.t1 AT3G49220 47.468 158 75 2 4 161 412 561 3.04e-42 149
MS.gene57411.t1 AT5G51500 49.686 159 72 3 3 161 308 458 2.31e-41 145
MS.gene57411.t1 AT5G53370 47.436 156 74 2 4 159 356 503 8.12e-41 144
MS.gene57411.t1 AT5G53370 47.436 156 74 2 4 159 392 539 1.05e-40 144
MS.gene57411.t1 AT3G47400 48.387 155 72 2 7 161 366 512 1.21e-40 144
MS.gene57411.t1 AT3G14300 49.032 155 66 3 4 158 742 883 1.61e-40 145
MS.gene57411.t1 AT4G02300 46.452 155 75 2 3 157 302 448 1.33e-39 140
MS.gene57411.t1 AT3G27980 44.079 152 75 2 7 158 273 414 1.54e-37 134
MS.gene57411.t1 AT4G02320 42.949 156 81 2 3 158 288 435 4.47e-36 130
MS.gene57411.t1 AT1G11590 44.898 147 71 2 7 153 300 436 8.05e-36 130
MS.gene57411.t1 AT4G03930 43.421 152 76 2 7 158 300 441 1.87e-35 129
MS.gene57411.t1 AT2G47040 45.806 155 75 3 5 158 368 514 1.25e-34 127
MS.gene57411.t1 AT3G62170 45.161 155 76 3 5 158 361 507 2.54e-34 126
MS.gene57411.t1 AT2G47030 44.586 157 74 4 5 158 361 507 9.59e-34 125
MS.gene57411.t1 AT3G29090 41.509 159 70 3 5 161 99 236 2.17e-32 117
MS.gene57411.t1 AT1G05310 39.623 159 77 3 5 157 173 318 3.83e-31 115
MS.gene57411.t1 AT5G55590 38.608 158 73 3 3 156 170 307 9.65e-26 100
MS.gene57411.t1 AT5G19730 36.943 157 74 3 10 161 179 315 1.44e-25 100
MS.gene57411.t1 AT5G55590 38.608 158 73 3 3 156 170 307 1.85e-25 100
MS.gene57411.t1 AT2G36700 34.356 163 84 3 4 161 123 267 2.32e-24 96.7
MS.gene57411.t1 AT5G47500 35.185 162 80 3 5 161 149 290 2.55e-24 97.1
MS.gene57411.t1 AT3G24130 41.985 131 61 3 28 158 144 259 3.14e-24 96.3
MS.gene57411.t1 AT5G18990 35.366 164 82 3 4 158 106 254 4.04e-22 90.9
MS.gene57411.t1 AT2G36710 35.220 159 82 4 5 158 173 315 5.32e-22 91.3
MS.gene57411.t1 AT2G19150 34.507 142 78 3 17 158 137 263 1.51e-21 88.6
MS.gene57411.t1 AT2G19150 34.507 142 78 3 17 158 137 263 3.13e-21 88.6
MS.gene57411.t1 AT2G47280 34.615 130 71 2 28 157 142 257 5.13e-19 82.4
MS.gene57411.t1 AT5G26810 34.932 146 80 3 15 160 134 264 2.28e-18 80.5
MS.gene57411.t1 AT2G21610 31.373 153 84 4 5 157 136 267 2.58e-18 80.5
MS.gene57411.t1 AT2G21610 31.373 153 84 4 5 157 131 262 2.59e-18 80.5
MS.gene57411.t1 AT5G07430 32.692 156 82 4 5 156 148 284 2.66e-17 77.8
MS.gene57411.t1 AT5G61680 30.573 157 85 4 5 156 150 287 3.95e-17 77.4
MS.gene57411.t1 AT1G69940 28.662 157 88 4 5 156 147 284 7.42e-17 76.6
MS.gene57411.t1 AT5G07410 28.662 157 88 4 5 156 147 284 7.57e-17 76.6
MS.gene57411.t1 AT1G44980 43.210 81 46 0 7 87 162 242 1.12e-15 72.0
MS.gene57411.t1 AT3G17060 30.061 163 91 4 5 161 125 270 2.95e-15 72.0
MS.gene57411.t1 AT5G07420 30.769 156 85 4 5 156 148 284 3.19e-15 72.0

Find 32 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAGAACTGTTTGATTAA+TGG 0.170821 4.3:+8375661 MS.gene57411:CDS
TTCCATTAATCAAACAGTTC+TGG 0.295517 4.3:-8375663 None:intergenic
TATATGTTGGCAGCGGTTCT+TGG 0.320405 4.3:+8375304 None:intergenic
GCATTGTTCTCACCCTTCTC+TGG 0.360849 4.3:-8375589 None:intergenic
TGCGGCATGATTTGTAGAAT+TGG 0.382944 4.3:-8375480 None:intergenic
GGTTCTTGGCGATGGATTCA+TGG 0.410206 4.3:+8375318 MS.gene57411:CDS
GCCACTGCTTGGTGTGCATC+AGG 0.413544 4.3:-8375373 None:intergenic
TACAAATCATGCCGCATTGT+AGG 0.434437 4.3:+8375487 MS.gene57411:CDS
ACAAATCCTGTACTCTGTGC+AGG 0.473024 4.3:-8375637 None:intergenic
TTGGCAGCGGTTCTTGGCGA+TGG 0.482288 4.3:+8375310 MS.gene57411:CDS
CTTCCAAGACTGTCAAATCC+TGG 0.495802 4.3:+8375546 MS.gene57411:CDS
ACCGACCCTGCACAGAGTAC+AGG 0.506536 4.3:+8375631 MS.gene57411:CDS
TTCTCTGGCTTGAGTTGTCT+AGG 0.508423 4.3:-8375574 None:intergenic
GAACCAGGATTTGACAGTCT+TGG 0.515146 4.3:-8375549 None:intergenic
CTAATCTGAATGCCACTGCT+TGG 0.525437 4.3:-8375384 None:intergenic
AACAATGCCATCACAGCTCA+TGG 0.547324 4.3:+8375604 MS.gene57411:CDS
TGAGTTGTCTAGGACGAACC+AGG 0.550190 4.3:-8375564 None:intergenic
TAATGGAACTGAGGATTACA+TGG 0.550296 4.3:+8375678 MS.gene57411:CDS
GGTTCTACCATGAGCTGTGA+TGG 0.554105 4.3:-8375611 None:intergenic
AAAATTATTTGGGAAGGCCA+TGG 0.571456 4.3:+8375731 MS.gene57411:CDS
TAGACAACTCAAGCCAGAGA+AGG 0.581118 4.3:+8375576 MS.gene57411:CDS
GTTCTAGAATACTCCTTCCA+TGG 0.582820 4.3:-8375748 None:intergenic
TCCTGTACTCTGTGCAGGGT+CGG 0.591729 4.3:-8375632 None:intergenic
TGGCGATGGATTCATGGCAA+AGG 0.597408 4.3:+8375324 MS.gene57411:CDS
TTATTTGGGAAGGCCATGGA+AGG 0.597634 4.3:+8375735 MS.gene57411:CDS
CTGTTTGATTAATGGAACTG+AGG 0.603136 4.3:+8375669 MS.gene57411:CDS
AGACAACTCAAGCCAGAGAA+GGG 0.603890 4.3:+8375577 MS.gene57411:CDS
CAAATCCTGTACTCTGTGCA+GGG 0.606314 4.3:-8375636 None:intergenic
TATTTGATATATGTTGGCAG+CGG 0.619328 4.3:+8375297 None:intergenic
TCCTGATGCACACCAAGCAG+TGG 0.624479 4.3:+8375372 MS.gene57411:CDS
CTAACGATCGAAAACACAGC+AGG 0.657735 4.3:+8375349 MS.gene57411:CDS
AATCTACATTGCCTACAATG+CGG 0.720239 4.3:-8375498 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTGCATAAAAATTATTT+GGG + chr4.3:8375721-8375740 MS.gene57411:CDS 15.0%
!! TAAAGTGCATAAAAATTATT+TGG + chr4.3:8375720-8375739 MS.gene57411:CDS 15.0%
!!! AAATAATTTTTATGCACTTT+AGG - chr4.3:8375721-8375740 None:intergenic 15.0%
!!! ATAGAGAATTGTGAATTTTT+AGG + chr4.3:8375424-8375443 MS.gene57411:CDS 20.0%
! TGCATAAAAATTATTTGGGA+AGG + chr4.3:8375725-8375744 MS.gene57411:CDS 25.0%
TTCCAGAACTGTTTGATTAA+TGG + chr4.3:8375661-8375680 MS.gene57411:CDS 30.0%
TTCCATTAATCAAACAGTTC+TGG - chr4.3:8375666-8375685 None:intergenic 30.0%
! GGCAATGTAGATTTTATCTT+TGG + chr4.3:8375508-8375527 MS.gene57411:CDS 30.0%
AAAATTATTTGGGAAGGCCA+TGG + chr4.3:8375731-8375750 MS.gene57411:CDS 35.0%
AATCTACATTGCCTACAATG+CGG - chr4.3:8375501-8375520 None:intergenic 35.0%
CTGTTTGATTAATGGAACTG+AGG + chr4.3:8375669-8375688 MS.gene57411:CDS 35.0%
TAATGGAACTGAGGATTACA+TGG + chr4.3:8375678-8375697 MS.gene57411:CDS 35.0%
TACAAATCATGCCGCATTGT+AGG + chr4.3:8375487-8375506 MS.gene57411:CDS 40.0%
! TGCGGCATGATTTGTAGAAT+TGG - chr4.3:8375483-8375502 None:intergenic 40.0%
!! GTTCTAGAATACTCCTTCCA+TGG - chr4.3:8375751-8375770 None:intergenic 40.0%
AACAATGCCATCACAGCTCA+TGG + chr4.3:8375604-8375623 MS.gene57411:CDS 45.0%
ACAAATCCTGTACTCTGTGC+AGG - chr4.3:8375640-8375659 None:intergenic 45.0%
AGACAACTCAAGCCAGAGAA+GGG + chr4.3:8375577-8375596 MS.gene57411:CDS 45.0%
CAAATCCTGTACTCTGTGCA+GGG - chr4.3:8375639-8375658 None:intergenic 45.0%
CTAACGATCGAAAACACAGC+AGG + chr4.3:8375349-8375368 MS.gene57411:CDS 45.0%
CTAATCTGAATGCCACTGCT+TGG - chr4.3:8375387-8375406 None:intergenic 45.0%
CTTCCAAGACTGTCAAATCC+TGG + chr4.3:8375546-8375565 MS.gene57411:CDS 45.0%
GAACCAGGATTTGACAGTCT+TGG - chr4.3:8375552-8375571 None:intergenic 45.0%
TAGACAACTCAAGCCAGAGA+AGG + chr4.3:8375576-8375595 MS.gene57411:CDS 45.0%
TTATTTGGGAAGGCCATGGA+AGG + chr4.3:8375735-8375754 MS.gene57411:CDS 45.0%
! TTCTCTGGCTTGAGTTGTCT+AGG - chr4.3:8375577-8375596 None:intergenic 45.0%
GCATTGTTCTCACCCTTCTC+TGG - chr4.3:8375592-8375611 None:intergenic 50.0%
GGTTCTACCATGAGCTGTGA+TGG - chr4.3:8375614-8375633 None:intergenic 50.0%
! GGTTCTTGGCGATGGATTCA+TGG + chr4.3:8375318-8375337 MS.gene57411:CDS 50.0%
! TGAGTTGTCTAGGACGAACC+AGG - chr4.3:8375567-8375586 None:intergenic 50.0%
! TGGCGATGGATTCATGGCAA+AGG + chr4.3:8375324-8375343 MS.gene57411:CDS 50.0%
TCCTGATGCACACCAAGCAG+TGG + chr4.3:8375372-8375391 MS.gene57411:CDS 55.0%
TCCTGTACTCTGTGCAGGGT+CGG - chr4.3:8375635-8375654 None:intergenic 55.0%
ACCGACCCTGCACAGAGTAC+AGG + chr4.3:8375631-8375650 MS.gene57411:CDS 60.0%
TTGGCAGCGGTTCTTGGCGA+TGG + chr4.3:8375310-8375329 MS.gene57411:CDS 60.0%
!! GCCACTGCTTGGTGTGCATC+AGG - chr4.3:8375376-8375395 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 8375307 8375792 8375307 ID=MS.gene57411
chr4.3 mRNA 8375307 8375792 8375307 ID=MS.gene57411.t1;Parent=MS.gene57411
chr4.3 exon 8375307 8375792 8375307 ID=MS.gene57411.t1.exon1;Parent=MS.gene57411.t1
chr4.3 CDS 8375307 8375792 8375307 ID=cds.MS.gene57411.t1;Parent=MS.gene57411.t1
Gene Sequence

>MS.gene57411

ATGTTGGCAGCGGTTCTTGGCGATGGATTCATGGCAAAGGATCTAACGATCGAAAACACAGCAGGTCCTGATGCACACCAAGCAGTGGCATTCAGATTAGACAGTGATCTTTCTGTAATAGAGAATTGTGAATTTTTAGGAAATCAAGATACTCTTTATGCTCATTCTCTGCGCCAATTCTACAAATCATGCCGCATTGTAGGCAATGTAGATTTTATCTTTGGAAACTCAGCTGCAATCTTCCAAGACTGTCAAATCCTGGTTCGTCCTAGACAACTCAAGCCAGAGAAGGGTGAGAACAATGCCATCACAGCTCATGGTAGAACCGACCCTGCACAGAGTACAGGATTTGTTTTCCAGAACTGTTTGATTAATGGAACTGAGGATTACATGGCATTGTATCATAGTAATCCTAAAGTGCATAAAAATTATTTGGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTTATTCATTCGATATTAG
Protein sequence

>MS.gene57411.t1

MLAAVLGDGFMAKDLTIENTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIVGNVDFIFGNSAAIFQDCQILVRPRQLKPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVLFIRY