AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051552


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051552.t1 MTR_1g015300 97.626 337 8 0 1 337 1 337 0.0 685
MS.gene051552.t1 MTR_3g104960 73.669 338 78 3 1 336 1 329 0.0 521
MS.gene051552.t1 MTR_5g006140 68.106 301 96 0 32 332 25 325 2.34e-156 441
MS.gene051552.t1 MTR_5g006140 71.915 235 66 0 32 266 25 259 1.95e-130 373
MS.gene051552.t1 MTR_5g034470 32.847 274 165 10 11 275 33 296 3.59e-38 139
MS.gene051552.t1 MTR_5g034470 32.847 274 165 10 11 275 33 296 3.78e-38 139
MS.gene051552.t1 MTR_8g063940 30.800 250 157 8 34 275 54 295 1.11e-34 130
MS.gene051552.t1 MTR_3g091090 28.723 282 190 8 46 322 83 358 9.95e-23 97.8
MS.gene051552.t1 MTR_3g078190 33.103 145 96 1 47 190 59 203 1.21e-21 94.0
MS.gene051552.t1 MTR_1g028360 30.116 259 173 6 46 302 88 340 3.49e-21 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051552.t1 AT5G19530 69.322 339 99 2 1 336 1 337 2.61e-177 494
MS.gene051552.t1 AT5G19530 70.769 325 93 1 12 336 8 330 1.72e-174 487
MS.gene051552.t1 AT1G23820 34.222 225 140 6 46 267 105 324 2.25e-39 142
MS.gene051552.t1 AT1G23820 33.953 215 135 5 46 258 61 270 1.15e-36 135
MS.gene051552.t1 AT1G70310 31.600 250 155 8 34 275 51 292 1.41e-35 132
MS.gene051552.t1 AT5G53120 31.538 260 157 7 46 300 84 327 3.22e-23 99.0
MS.gene051552.t1 AT5G53120 31.538 260 157 7 46 300 84 327 3.22e-23 99.0
MS.gene051552.t1 AT5G53120 31.538 260 157 7 46 300 84 327 3.22e-23 99.0
MS.gene051552.t1 AT5G53120 31.538 260 157 7 46 300 84 327 3.22e-23 99.0
MS.gene051552.t1 AT5G53120 31.538 260 157 7 46 300 84 327 3.22e-23 99.0
MS.gene051552.t1 AT5G53120 31.538 260 157 7 46 300 101 344 4.60e-23 99.0
MS.gene051552.t1 AT5G53120 28.571 287 157 9 46 300 84 354 1.41e-19 89.0

Find 75 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGAACCTGTTGAGTTTAA+AGG 0.204551 1.3:-6955298 None:intergenic
TCATTAACGTAAAACATTTC+TGG 0.211926 1.3:-6955174 None:intergenic
AAAATACCTGGTTGCAAATA+AGG 0.242099 1.3:+6957800 MS.gene051552:CDS
ACATGGTTTGGTTGAACTTC+AGG 0.282517 1.3:-6955213 None:intergenic
AGAATTGAAGCAAGAATAAA+AGG 0.285461 1.3:+6959025 MS.gene051552:CDS
TCCACAGCATCAATCAATAT+TGG 0.287518 1.3:-6958992 None:intergenic
CCCCAAGACGGTGTTTATAA+TGG 0.300655 1.3:+6956853 MS.gene051552:CDS
CCCATTATAAACACCGTCTT+GGG 0.300710 1.3:-6956854 None:intergenic
CTCTTGGATACAAAGCGTTT+TGG 0.309876 1.3:+6955573 MS.gene051552:CDS
TGATTCATGGGGATGGGTTA+TGG 0.329159 1.3:+6958872 MS.gene051552:CDS
TGATATCATTGTTGGAGATT+TGG 0.339425 1.3:+6958032 MS.gene051552:CDS
TACCATCATTTGCTGATTCA+TGG 0.351693 1.3:+6958859 MS.gene051552:CDS
ATGCCATTGTCAGTGAGTTT+AGG 0.356612 1.3:-6958123 None:intergenic
GAGAAGTTTGATATCATTGT+TGG 0.364473 1.3:+6958024 MS.gene051552:CDS
CTTCACAGCTTTCTCATAGA+AGG 0.372098 1.3:-6958100 None:intergenic
TTCTTATAGGCTGGACCAGC+AGG 0.390978 1.3:+6958418 MS.gene051552:intron
AATGGTCCTTTAAACTCAAC+AGG 0.400428 1.3:+6955292 MS.gene051552:CDS
ATACCAGGACATTGCTCTCT+TGG 0.416640 1.3:+6955557 MS.gene051552:CDS
TGCTCTATCTAGACGGTGCT+TGG 0.419252 1.3:+6959053 MS.gene051552:CDS
CCCAAGACGGTGTTTATAAT+GGG 0.420987 1.3:+6956854 MS.gene051552:CDS
ATTGATTGATGCTGTGGAAA+TGG 0.421971 1.3:+6958997 MS.gene051552:CDS
CATTTGCTGATTCATGGGGA+TGG 0.430597 1.3:+6958865 MS.gene051552:CDS
GATAATGCTAGATTTATTCC+TGG 0.440598 1.3:+6959250 MS.gene051552:CDS
CATGGTTTGGTTGAACTTCA+GGG 0.443362 1.3:-6955212 None:intergenic
TGATTCTTCCACATGGTATG+AGG 0.443438 1.3:+6955248 MS.gene051552:CDS
TATACACAACACCATAAAAC+AGG 0.448583 1.3:+6958471 MS.gene051552:CDS
TCAACGTTGTTGACATGGTT+TGG 0.458692 1.3:-6955225 None:intergenic
AGTATTCCTGCAGGAGGTGG+TGG 0.468962 1.3:+6957767 MS.gene051552:intron
ATATAGGCGTTGATGCTTGA+TGG 0.475521 1.3:+6955961 MS.gene051552:intron
ACCATCATTTGCTGATTCAT+GGG 0.486333 1.3:+6958860 MS.gene051552:CDS
TGGTGAAGGTTCAGCAGCTA+GGG 0.487536 1.3:+6956880 MS.gene051552:CDS
TCCCATTATAAACACCGTCT+TGG 0.488858 1.3:-6956855 None:intergenic
CATTTCTGGTGCCTCTCCCA+TGG 0.496543 1.3:-6955160 None:intergenic
TTTATAATGGGAGGTGGTGA+AGG 0.498635 1.3:+6956866 MS.gene051552:CDS
TATTCATGATGGTAGATGAA+TGG 0.501719 1.3:-6959078 None:intergenic
CCCATTTGGTGCAGATGTGG+TGG 0.502068 1.3:+6958821 MS.gene051552:intron
GGCTGAATTAGAGAAAAGAA+AGG 0.510493 1.3:+6958002 MS.gene051552:CDS
GCTAGATTTATTCCTGGTCA+TGG 0.513206 1.3:+6959256 MS.gene051552:CDS
ATTTGCTGATTCATGGGGAT+GGG 0.513753 1.3:+6958866 MS.gene051552:CDS
TTGGCTGACCCACTTGAAGA+TGG 0.518779 1.3:+6958051 MS.gene051552:CDS
AGCTCTCAAGCACAAGTCAA+TGG 0.518812 1.3:+6956904 MS.gene051552:CDS
TCATTGATGATGATCTCAAA+TGG 0.521281 1.3:+6955274 MS.gene051552:CDS
GCATAGCATGTCGTCCCTAA+AGG 0.523854 1.3:+6959278 MS.gene051552:CDS
GTGGTGAAGGTTCAGCAGCT+AGG 0.528642 1.3:+6956879 MS.gene051552:CDS
AATCATCAACGTTGTTGACA+TGG 0.529958 1.3:-6955230 None:intergenic
ACCAATATTGATTGATGCTG+TGG 0.532194 1.3:+6958991 MS.gene051552:CDS
CCCCATGAATCAGCAAATGA+TGG 0.540394 1.3:-6958861 None:intergenic
AACAAATAAAACCATGGGAG+AGG 0.560741 1.3:+6955149 None:intergenic
CGACATGCTATGCCATGACC+AGG 0.567260 1.3:-6959268 None:intergenic
TATCCAAGAGAGCAATGTCC+TGG 0.569197 1.3:-6955560 None:intergenic
GGACACGGTCTTATTCATGA+TGG 0.571306 1.3:-6959089 None:intergenic
TTACGTTAATGAGTTTGCAA+AGG 0.578372 1.3:+6955185 MS.gene051552:CDS
TTGTGTGAAAAGATACCTGC+TGG 0.579877 1.3:-6958433 None:intergenic
ATGCCTCCTTATTTGCAACC+AGG 0.583465 1.3:-6957806 None:intergenic
CAGCATCAATCAATATTGGT+TGG 0.586960 1.3:-6958988 None:intergenic
TTTGGATGACATAAAAGAGA+GGG 0.601046 1.3:-6956039 None:intergenic
GGATTTCTGCAGAAAATACC+TGG 0.607431 1.3:+6957788 MS.gene051552:CDS
GGAAAATTGCTCTATCTAGA+CGG 0.609264 1.3:+6959046 MS.gene051552:CDS
AAGCCTAAACTCACTGACAA+TGG 0.615534 1.3:+6958120 MS.gene051552:CDS
CCATTATAAACACCGTCTTG+GGG 0.615981 1.3:-6956853 None:intergenic
TAAAGCGATTAGTGAATACC+AGG 0.616434 1.3:+6955542 MS.gene051552:CDS
ACGGTGTTTATAATGGGAGG+TGG 0.620093 1.3:+6956860 MS.gene051552:CDS
TTAGTGTAGAGCTGATAGCA+AGG 0.624227 1.3:-6958075 None:intergenic
ACTTTGCACAGTTGATGACA+AGG 0.637400 1.3:-6957848 None:intergenic
TAGCAAGGACCATCTTCAAG+TGG 0.638054 1.3:-6958060 None:intergenic
AGCAAGGACCATCTTCAAGT+GGG 0.640286 1.3:-6958059 None:intergenic
CTTTGGATGACATAAAAGAG+AGG 0.645177 1.3:-6956040 None:intergenic
GTACACTTACGATTTGGACA+CGG 0.645390 1.3:-6959104 None:intergenic
CCATCATTTGCTGATTCATG+GGG 0.648783 1.3:+6958861 MS.gene051552:CDS
ATACCTGGTTGCAAATAAGG+AGG 0.651779 1.3:+6957803 MS.gene051552:CDS
AGTTATGTGCGATATTGACA+AGG 0.654516 1.3:+6956934 MS.gene051552:CDS
ATATATTGGCAGCCCCAAGA+CGG 0.656927 1.3:+6956841 MS.gene051552:intron
AAGACGGTGTTTATAATGGG+AGG 0.658751 1.3:+6956857 MS.gene051552:CDS
AATGATTTCCTCATACCATG+TGG 0.685776 1.3:-6955256 None:intergenic
ACGTTGATGATTCTTCCACA+TGG 0.698888 1.3:+6955241 MS.gene051552:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTATATACTGATAA+TGG + chr1.3:6957353-6957372 MS.gene051552:intron 10.0%
!! CTCAAATTAATAATTAATAA+AGG + chr1.3:6957617-6957636 MS.gene051552:intron 10.0%
!! TTATAATACTATAAACAAAA+TGG - chr1.3:6956290-6956309 None:intergenic 10.0%
!!! TTTTTTCATTTTAATATACA+TGG - chr1.3:6956176-6956195 None:intergenic 10.0%
!!! TTTTTTTAAAACAATAGTAA+TGG + chr1.3:6957410-6957429 MS.gene051552:intron 10.0%
!! AACAAAATTTAGTATATGTT+TGG + chr1.3:6955686-6955705 MS.gene051552:intron 15.0%
!! AGAAAAAAAAAACTAGTAAT+TGG + chr1.3:6956533-6956552 MS.gene051552:intron 15.0%
!! ATTATAAAACAAACTTACTT+TGG - chr1.3:6956060-6956079 None:intergenic 15.0%
!!! AACAAAAATATTTTGCTAAA+AGG + chr1.3:6957491-6957510 MS.gene051552:intron 15.0%
!!! AAGTCATATTCTTATTTTTT+GGG + chr1.3:6956967-6956986 MS.gene051552:intron 15.0%
!!! AAGTTTGTTTTATAATATCA+GGG + chr1.3:6956064-6956083 MS.gene051552:intron 15.0%
!!! AATATGAGTTTTTTTCTTTT+TGG + chr1.3:6956130-6956149 MS.gene051552:intron 15.0%
!!! AATGTTAAATATTGATTAGA+TGG - chr1.3:6958375-6958394 None:intergenic 15.0%
!!! ATGTTAAATATTGATTAGAT+GGG - chr1.3:6958374-6958393 None:intergenic 15.0%
!!! ATTATTAAGTTTTCAATTTG+AGG - chr1.3:6957029-6957048 None:intergenic 15.0%
!!! TAAGTCATATTCTTATTTTT+TGG + chr1.3:6956966-6956985 MS.gene051552:intron 15.0%
!!! TAAGTTTGTTTTATAATATC+AGG + chr1.3:6956063-6956082 MS.gene051552:intron 15.0%
!!! TACTAAATTTTGTTTTTTGA+AGG - chr1.3:6955680-6955699 None:intergenic 15.0%
!!! TTATTAAGTTTTCAATTTGA+GGG - chr1.3:6957028-6957047 None:intergenic 15.0%
!! AAAGTCTAATTATGTTCAAT+TGG - chr1.3:6958631-6958650 None:intergenic 20.0%
!! AAGTCTAATTATGTTCAATT+GGG - chr1.3:6958630-6958649 None:intergenic 20.0%
!! AATAAGAGAATATTACATCA+AGG - chr1.3:6956267-6956286 None:intergenic 20.0%
!! AATAATATCCATATTGATGT+GGG + chr1.3:6957046-6957065 MS.gene051552:intron 20.0%
!! AATTCAATACATGAAATTGT+GGG + chr1.3:6958724-6958743 MS.gene051552:intron 20.0%
!! ACAAATAAATTGAGACAAAA+TGG - chr1.3:6957210-6957229 None:intergenic 20.0%
!! ATCCAAATTATTATTGTTTC+AGG + chr1.3:6959197-6959216 MS.gene051552:intron 20.0%
!! CTATAAGAAAACATACAAAA+AGG - chr1.3:6958407-6958426 None:intergenic 20.0%
!! GATATAAACATTGTATACAT+AGG - chr1.3:6956452-6956471 None:intergenic 20.0%
!! TAAAACAGAGGAAATTAAAA+AGG - chr1.3:6955330-6955349 None:intergenic 20.0%
!! TAATAATATCCATATTGATG+TGG + chr1.3:6957045-6957064 MS.gene051552:intron 20.0%
!! TACTATATCATATAAAACAG+AGG - chr1.3:6955342-6955361 None:intergenic 20.0%
!! TTGTAAAAGGATAAAAACAT+AGG - chr1.3:6956731-6956750 None:intergenic 20.0%
!! TTTACAAAGGAAAAAACTTA+TGG + chr1.3:6956561-6956580 MS.gene051552:intron 20.0%
!!! AAATTCTTTAAAAATGGACA+CGG - chr1.3:6959174-6959193 None:intergenic 20.0%
!!! AAGTCTATAAAAAAGCATAA+TGG - chr1.3:6956766-6956785 None:intergenic 20.0%
!!! AAGTTTTTTTTTTTTAGGGA+AGG + chr1.3:6957378-6957397 MS.gene051552:intron 20.0%
!!! AATCACATACTTTTTTTTAG+AGG - chr1.3:6955919-6955938 None:intergenic 20.0%
!!! ACTTTGCTATATAATTTTAG+TGG + chr1.3:6957099-6957118 MS.gene051552:intron 20.0%
!!! AGTCATATTCTTATTTTTTG+GGG + chr1.3:6956968-6956987 MS.gene051552:intron 20.0%
!!! AGTTTGTTTTATAATATCAG+GGG + chr1.3:6956065-6956084 MS.gene051552:intron 20.0%
!!! CTTTTTGTATGTTTTCTTAT+AGG + chr1.3:6958405-6958424 MS.gene051552:intron 20.0%
!!! GATGTCAAATTCTTTAAAAA+TGG - chr1.3:6959180-6959199 None:intergenic 20.0%
!!! GGTCAAGTTTTTTTTTTTTA+GGG + chr1.3:6957374-6957393 MS.gene051552:intron 20.0%
!!! GTAATTGGATATTTTTACAA+AGG + chr1.3:6956548-6956567 MS.gene051552:intron 20.0%
!!! TCCTTATTTTTCTTAAACAA+GGG - chr1.3:6957078-6957097 None:intergenic 20.0%
!!! TGGTCAAGTTTTTTTTTTTT+AGG + chr1.3:6957373-6957392 MS.gene051552:intron 20.0%
!!! TTTTCTTTTTAAAATGACGA+TGG - chr1.3:6956519-6956538 None:intergenic 20.0%
!!! TTTTTTTTTTTTTGTGTGTG+TGG + chr1.3:6957927-6957946 MS.gene051552:intron 20.0%
! AGAATTGAAGCAAGAATAAA+AGG + chr1.3:6959025-6959044 MS.gene051552:CDS 25.0%
! AGCAAACTTAAGTCATTTAA+GGG - chr1.3:6957317-6957336 None:intergenic 25.0%
! AGCCTGAAACAATAATAATT+TGG - chr1.3:6959202-6959221 None:intergenic 25.0%
! ATGTTAGATAGTTGTTCAAT+AGG + chr1.3:6958184-6958203 MS.gene051552:intron 25.0%
! ATTGAACATCGTTCATTTAT+CGG + chr1.3:6956390-6956409 MS.gene051552:intron 25.0%
! CAATTCAATACATGAAATTG+TGG + chr1.3:6958723-6958742 MS.gene051552:intron 25.0%
! TAAAAGGATAAAAACATAGG+TGG - chr1.3:6956728-6956747 None:intergenic 25.0%
! TAGCAAACTTAAGTCATTTA+AGG - chr1.3:6957318-6957337 None:intergenic 25.0%
! TCATTAACGTAAAACATTTC+TGG - chr1.3:6955177-6955196 None:intergenic 25.0%
! TCGTAATTTCGATAAATCTA+CGG - chr1.3:6955717-6955736 None:intergenic 25.0%
! TGTACAAACCTCAAATTTAA+AGG + chr1.3:6959122-6959141 MS.gene051552:intron 25.0%
! TTAATAAAGGACAGACAAAA+TGG + chr1.3:6957630-6957649 MS.gene051552:intron 25.0%
!! AATTTCTATGCTTTGAATTC+AGG + chr1.3:6958958-6958977 MS.gene051552:intron 25.0%
!! CTTCACAATTTTGTGTTAAA+GGG + chr1.3:6957981-6958000 MS.gene051552:intron 25.0%
!!! AAACATAGGTGGATTTTTTT+AGG - chr1.3:6956717-6956736 None:intergenic 25.0%
!!! AATAAAAAAAGTATTCCTGC+AGG + chr1.3:6957758-6957777 MS.gene051552:intron 25.0%
!!! CCTTATTTTTCTTAAACAAG+GGG - chr1.3:6957077-6957096 None:intergenic 25.0%
!!! GCTTTTTTATAGACTTGATT+GGG + chr1.3:6956770-6956789 MS.gene051552:intron 25.0%
!!! GTCATATTCTTATTTTTTGG+GGG + chr1.3:6956969-6956988 MS.gene051552:intron 25.0%
!!! GTCCTTATTTTTCTTAAACA+AGG - chr1.3:6957079-6957098 None:intergenic 25.0%
!!! TGCTTTTTTATAGACTTGAT+TGG + chr1.3:6956769-6956788 MS.gene051552:intron 25.0%
!!! TGTTGCTATCAATATTTTTG+CGG - chr1.3:6956366-6956385 None:intergenic 25.0%
!!! TTGTTATTTATGCTGCATAT+AGG + chr1.3:6955945-6955964 MS.gene051552:intron 25.0%
AAAATACCTGGTTGCAAATA+AGG + chr1.3:6957800-6957819 MS.gene051552:CDS 30.0%
AAAGCGTGGTAACAAAAATA+TGG - chr1.3:6958343-6958362 None:intergenic 30.0%
ACACTTGTTCAAACAAAACA+TGG + chr1.3:6958689-6958708 MS.gene051552:intron 30.0%
ACCTACTAGTAAAAGATTTG+AGG - chr1.3:6958521-6958540 None:intergenic 30.0%
GAGAAGTTTGATATCATTGT+TGG + chr1.3:6958024-6958043 MS.gene051552:CDS 30.0%
GATAATGCTAGATTTATTCC+TGG + chr1.3:6959250-6959269 MS.gene051552:CDS 30.0%
GATTATGTTTGATGAAACCT+TGG + chr1.3:6956792-6956811 MS.gene051552:intron 30.0%
TAAAAATGGACACGGTTAAA+TGG - chr1.3:6959166-6959185 None:intergenic 30.0%
TAAACCACACCACTTTATAT+TGG + chr1.3:6956425-6956444 MS.gene051552:intron 30.0%
TACATAGGTCCAATATAAAG+TGG - chr1.3:6956437-6956456 None:intergenic 30.0%
TATACACAACACCATAAAAC+AGG + chr1.3:6958471-6958490 MS.gene051552:CDS 30.0%
TATTCATGATGGTAGATGAA+TGG - chr1.3:6959081-6959100 None:intergenic 30.0%
TGATATCATTGTTGGAGATT+TGG + chr1.3:6958032-6958051 MS.gene051552:CDS 30.0%
TGGTAAGAATTTGTAAGACA+TGG + chr1.3:6957543-6957562 MS.gene051552:intron 30.0%
TTAAGTCATTTAAGGGATAC+TGG - chr1.3:6957310-6957329 None:intergenic 30.0%
TTACGTTAATGAGTTTGCAA+AGG + chr1.3:6955185-6955204 MS.gene051552:CDS 30.0%
TTTGGATGACATAAAAGAGA+GGG - chr1.3:6956042-6956061 None:intergenic 30.0%
! ACATTTGAAGACCTGTTTTA+TGG - chr1.3:6958485-6958504 None:intergenic 30.0%
! ACCTCAAATCTTTTACTAGT+AGG + chr1.3:6958517-6958536 MS.gene051552:intron 30.0%
! ACTCTTTTATACTCTCTTGT+TGG - chr1.3:6956474-6956493 None:intergenic 30.0%
! CCCCTTGTTTAAGAAAAATA+AGG + chr1.3:6957074-6957093 MS.gene051552:intron 30.0%
! GCTTCACAATTTTGTGTTAA+AGG + chr1.3:6957980-6957999 MS.gene051552:intron 30.0%
! TAAGTTTTCAATTTGAGGGA+CGG - chr1.3:6957024-6957043 None:intergenic 30.0%
! TTGTATGTTTTCTTATAGGC+TGG + chr1.3:6958409-6958428 MS.gene051552:intron 30.0%
!! GCGTGCTATTAATTTGTAAA+AGG - chr1.3:6956744-6956763 None:intergenic 30.0%
!! TAGTAGGTGTTTGTTATAAC+CGG + chr1.3:6958533-6958552 MS.gene051552:intron 30.0%
!! TCATTGATGATGATCTCAAA+TGG + chr1.3:6955274-6955293 MS.gene051552:CDS 30.0%
!! TTGTTTTATAATATCAGGGG+AGG + chr1.3:6956068-6956087 MS.gene051552:intron 30.0%
!!! TTTTATGGTGTTGTGTATAG+AGG - chr1.3:6958470-6958489 None:intergenic 30.0%
AACCTTGGACTAATATGAAG+AGG + chr1.3:6956807-6956826 MS.gene051552:intron 35.0%
AACGAACCTGTTGAGTTTAA+AGG - chr1.3:6955301-6955320 None:intergenic 35.0%
AATCATCAACGTTGTTGACA+TGG - chr1.3:6955233-6955252 None:intergenic 35.0%
AATGATTTCCTCATACCATG+TGG - chr1.3:6955259-6955278 None:intergenic 35.0%
AATGGTCCTTTAAACTCAAC+AGG + chr1.3:6955292-6955311 MS.gene051552:CDS 35.0%
AGCCAATAACAAATTCAACC+CGG - chr1.3:6958565-6958584 None:intergenic 35.0%
AGGCATGTGTGGTAATATAT+TGG + chr1.3:6956827-6956846 MS.gene051552:intron 35.0%
AGGTTTGTACACTTACGATT+TGG - chr1.3:6959113-6959132 None:intergenic 35.0%
AGTTATGTGCGATATTGACA+AGG + chr1.3:6956934-6956953 MS.gene051552:CDS 35.0%
ATGGAACAGAGAGAGAATAT+TGG + chr1.3:6957523-6957542 MS.gene051552:intron 35.0%
ATTGATTGATGCTGTGGAAA+TGG + chr1.3:6958997-6959016 MS.gene051552:CDS 35.0%
CAGCATCAATCAATATTGGT+TGG - chr1.3:6958991-6959010 None:intergenic 35.0%
CTTTGGATGACATAAAAGAG+AGG - chr1.3:6956043-6956062 None:intergenic 35.0%
GGAAAATTGCTCTATCTAGA+CGG + chr1.3:6959046-6959065 MS.gene051552:CDS 35.0%
GGCTGAATTAGAGAAAAGAA+AGG + chr1.3:6958002-6958021 MS.gene051552:CDS 35.0%
TAAAGCGATTAGTGAATACC+AGG + chr1.3:6955542-6955561 MS.gene051552:CDS 35.0%
TCAGAAGTTGTGATACAATC+TGG - chr1.3:6958225-6958244 None:intergenic 35.0%
TCCACAGCATCAATCAATAT+TGG - chr1.3:6958995-6959014 None:intergenic 35.0%
TGCTAAAAGGACAGACAAAA+TGG + chr1.3:6957504-6957523 MS.gene051552:intron 35.0%
TTCAAAATCGCTCACTTGAT+TGG - chr1.3:6958305-6958324 None:intergenic 35.0%
TTGGAAAAAGAATACCAGTC+AGG - chr1.3:6958286-6958305 None:intergenic 35.0%
! ACCAATATTGATTGATGCTG+TGG + chr1.3:6958991-6959010 MS.gene051552:CDS 35.0%
! AGCTAGCTCATTTTGCAAAT+AGG + chr1.3:6957875-6957894 MS.gene051552:intron 35.0%
! AGGTATCTTTTCACACAAAG+AGG + chr1.3:6958438-6958457 MS.gene051552:CDS 35.0%
! ATGTTTTGCTTACGTGCTTT+TGG + chr1.3:6958776-6958795 MS.gene051552:intron 35.0%
! TACAATCTGGAGCGAAATTT+AGG - chr1.3:6958212-6958231 None:intergenic 35.0%
! TTTTGTGTGTGTGGATTTCA+TGG + chr1.3:6957936-6957955 MS.gene051552:intron 35.0%
!! AAAAAAAGTATTCCTGCAGG+AGG + chr1.3:6957761-6957780 MS.gene051552:intron 35.0%
!! AACCGGGTTGAATTTGTTAT+TGG + chr1.3:6958560-6958579 MS.gene051552:intron 35.0%
!! ACCATCATTTGCTGATTCAT+GGG + chr1.3:6958860-6958879 MS.gene051552:CDS 35.0%
!! TACCATCATTTGCTGATTCA+TGG + chr1.3:6958859-6958878 MS.gene051552:CDS 35.0%
AAGCCTAAACTCACTGACAA+TGG + chr1.3:6958120-6958139 MS.gene051552:CDS 40.0%
AGAGTCTGACAAAGTAAGTG+TGG + chr1.3:6956489-6956508 MS.gene051552:intron 40.0%
AGGTCCAATATAAAGTGGTG+TGG - chr1.3:6956432-6956451 None:intergenic 40.0%
ATACCTGGTTGCAAATAAGG+AGG + chr1.3:6957803-6957822 MS.gene051552:CDS 40.0%
ATGCCATTGTCAGTGAGTTT+AGG - chr1.3:6958126-6958145 None:intergenic 40.0%
CCAGAGGTCCTTTAAATTTG+AGG - chr1.3:6959133-6959152 None:intergenic 40.0%
CCATTATAAACACCGTCTTG+GGG - chr1.3:6956856-6956875 None:intergenic 40.0%
CCCAAGACGGTGTTTATAAT+GGG + chr1.3:6956854-6956873 MS.gene051552:CDS 40.0%
CCCATTATAAACACCGTCTT+GGG - chr1.3:6956857-6956876 None:intergenic 40.0%
CCTCAAATTTAAAGGACCTC+TGG + chr1.3:6959130-6959149 MS.gene051552:intron 40.0%
CTTCACAGCTTTCTCATAGA+AGG - chr1.3:6958103-6958122 None:intergenic 40.0%
GCTAGATTTATTCCTGGTCA+TGG + chr1.3:6959256-6959275 MS.gene051552:CDS 40.0%
GGATTTCTGCAGAAAATACC+TGG + chr1.3:6957788-6957807 MS.gene051552:CDS 40.0%
GTCAGGAGTTACAACTCAAT+CGG - chr1.3:6958269-6958288 None:intergenic 40.0%
TCAACGTTGTTGACATGGTT+TGG - chr1.3:6955228-6955247 None:intergenic 40.0%
TCCCATTATAAACACCGTCT+TGG - chr1.3:6956858-6956877 None:intergenic 40.0%
TGATTCTTCCACATGGTATG+AGG + chr1.3:6955248-6955267 MS.gene051552:CDS 40.0%
TGCCTCTTCATATTAGTCCA+AGG - chr1.3:6956812-6956831 None:intergenic 40.0%
TGTTCCTCAAAAGTCTACCT+GGG - chr1.3:6958157-6958176 None:intergenic 40.0%
TTAGTGTAGAGCTGATAGCA+AGG - chr1.3:6958078-6958097 None:intergenic 40.0%
TTCGTTCCTTCTTTCCCATT+TGG + chr1.3:6958807-6958826 MS.gene051552:intron 40.0%
TTGTGTGAAAAGATACCTGC+TGG - chr1.3:6958436-6958455 None:intergenic 40.0%
TTGTTATAACCGGATCGAAC+CGG + chr1.3:6958543-6958562 MS.gene051552:intron 40.0%
! AAGACGGTGTTTATAATGGG+AGG + chr1.3:6956857-6956876 MS.gene051552:CDS 40.0%
! ATTGAGTTGTAACTCCTGAC+TGG + chr1.3:6958269-6958288 MS.gene051552:intron 40.0%
! CTAATATGAAGAGGCATGTG+TGG + chr1.3:6956816-6956835 MS.gene051552:intron 40.0%
! GTACACTTACGATTTGGACA+CGG - chr1.3:6959107-6959126 None:intergenic 40.0%
! TTTATAATGGGAGGTGGTGA+AGG + chr1.3:6956866-6956885 MS.gene051552:CDS 40.0%
!! ACATGGTTTGGTTGAACTTC+AGG - chr1.3:6955216-6955235 None:intergenic 40.0%
!! ACGTTGATGATTCTTCCACA+TGG + chr1.3:6955241-6955260 MS.gene051552:CDS 40.0%
!! ACTTTGCACAGTTGATGACA+AGG - chr1.3:6957851-6957870 None:intergenic 40.0%
!! ATATAGGCGTTGATGCTTGA+TGG + chr1.3:6955961-6955980 MS.gene051552:intron 40.0%
!! ATTTGCTGATTCATGGGGAT+GGG + chr1.3:6958866-6958885 MS.gene051552:CDS 40.0%
!! CATGGTTTGGTTGAACTTCA+GGG - chr1.3:6955215-6955234 None:intergenic 40.0%
!! CCATCATTTGCTGATTCATG+GGG + chr1.3:6958861-6958880 MS.gene051552:CDS 40.0%
!! CTCTTGGATACAAAGCGTTT+TGG + chr1.3:6955573-6955592 MS.gene051552:CDS 40.0%
!!! ATTTTGATTCGCAACGAGTG+TGG - chr1.3:6955755-6955774 None:intergenic 40.0%
!!! GGATACAAAGCGTTTTGGAA+AGG + chr1.3:6955578-6955597 MS.gene051552:CDS 40.0%
AGCAAGGACCATCTTCAAGT+GGG - chr1.3:6958062-6958081 None:intergenic 45.0%
AGCTCTCAAGCACAAGTCAA+TGG + chr1.3:6956904-6956923 MS.gene051552:CDS 45.0%
ATACCAGGACATTGCTCTCT+TGG + chr1.3:6955557-6955576 MS.gene051552:CDS 45.0%
ATATATTGGCAGCCCCAAGA+CGG + chr1.3:6956841-6956860 MS.gene051552:intron 45.0%
CCCCAAGACGGTGTTTATAA+TGG + chr1.3:6956853-6956872 MS.gene051552:CDS 45.0%
CCCCATGAATCAGCAAATGA+TGG - chr1.3:6958864-6958883 None:intergenic 45.0%
GTGTTCCTCAAAAGTCTACC+TGG - chr1.3:6958158-6958177 None:intergenic 45.0%
TAGCAAGGACCATCTTCAAG+TGG - chr1.3:6958063-6958082 None:intergenic 45.0%
TATCCAAGAGAGCAATGTCC+TGG - chr1.3:6955563-6955582 None:intergenic 45.0%
TCTGCACCAAATGGGAAAGA+AGG - chr1.3:6958816-6958835 None:intergenic 45.0%
TGTTATAACCGGATCGAACC+GGG + chr1.3:6958544-6958563 MS.gene051552:intron 45.0%
! AAATTCAACCCGGTTCGATC+CGG - chr1.3:6958555-6958574 None:intergenic 45.0%
! ACGGTGTTTATAATGGGAGG+TGG + chr1.3:6956860-6956879 MS.gene051552:CDS 45.0%
! ATGCCTCCTTATTTGCAACC+AGG - chr1.3:6957809-6957828 None:intergenic 45.0%
! CAATGGCATTTTTGTGACCC+AGG + chr1.3:6958137-6958156 MS.gene051552:CDS 45.0%
!! AAAAGTATTCCTGCAGGAGG+TGG + chr1.3:6957764-6957783 MS.gene051552:intron 45.0%
!! CATTTGCTGATTCATGGGGA+TGG + chr1.3:6958865-6958884 MS.gene051552:CDS 45.0%
!! GGACACGGTCTTATTCATGA+TGG - chr1.3:6959092-6959111 None:intergenic 45.0%
!! TGATTCATGGGGATGGGTTA+TGG + chr1.3:6958872-6958891 MS.gene051552:CDS 45.0%
!! TTTCCCATTTGGTGCAGATG+TGG + chr1.3:6958818-6958837 MS.gene051552:intron 45.0%
CCACCACATCTGCACCAAAT+GGG - chr1.3:6958824-6958843 None:intergenic 50.0%
GATGGGTAGTGAGAAAAGCG+TGG - chr1.3:6958357-6958376 None:intergenic 50.0%
TGCTCTATCTAGACGGTGCT+TGG + chr1.3:6959053-6959072 MS.gene051552:CDS 50.0%
TGGTGAAGGTTCAGCAGCTA+GGG + chr1.3:6956880-6956899 MS.gene051552:CDS 50.0%
TTCTTATAGGCTGGACCAGC+AGG + chr1.3:6958418-6958437 MS.gene051552:intron 50.0%
TTGGCTGACCCACTTGAAGA+TGG + chr1.3:6958051-6958070 MS.gene051552:CDS 50.0%
! GTGACCCAGGTAGACTTTTG+AGG + chr1.3:6958150-6958169 MS.gene051552:intron 50.0%
AGAAATCCACCACCTCCTGC+AGG - chr1.3:6957776-6957795 None:intergenic 55.0%
AGTATTCCTGCAGGAGGTGG+TGG + chr1.3:6957767-6957786 MS.gene051552:intron 55.0%
CAACGAGTGTGGCACGATCA+CGG - chr1.3:6955744-6955763 None:intergenic 55.0%
CGACATGCTATGCCATGACC+AGG - chr1.3:6959271-6959290 None:intergenic 55.0%
GCCACCACATCTGCACCAAA+TGG - chr1.3:6958825-6958844 None:intergenic 55.0%
GTGGTGAAGGTTCAGCAGCT+AGG + chr1.3:6956879-6956898 MS.gene051552:CDS 55.0%
! GGGCACTGCCCACATCAATA+TGG - chr1.3:6957057-6957076 None:intergenic 55.0%
!! CCCATTTGGTGCAGATGTGG+TGG + chr1.3:6958821-6958840 MS.gene051552:intron 55.0%
CGAGTGTGGCACGATCACGG+TGG - chr1.3:6955741-6955760 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 6955162 6959297 6955162 ID=MS.gene051552
chr1.3 mRNA 6955162 6959297 6955162 ID=MS.gene051552.t1;Parent=MS.gene051552
chr1.3 exon 6955162 6955313 6955162 ID=MS.gene051552.t1.exon1;Parent=MS.gene051552.t1
chr1.3 CDS 6955162 6955313 6955162 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6955533 6955599 6955533 ID=MS.gene051552.t1.exon2;Parent=MS.gene051552.t1
chr1.3 CDS 6955533 6955599 6955533 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6955967 6956061 6955967 ID=MS.gene051552.t1.exon3;Parent=MS.gene051552.t1
chr1.3 CDS 6955967 6956061 6955967 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6956853 6956955 6956853 ID=MS.gene051552.t1.exon4;Parent=MS.gene051552.t1
chr1.3 CDS 6956853 6956955 6956853 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6957780 6957868 6957780 ID=MS.gene051552.t1.exon5;Parent=MS.gene051552.t1
chr1.3 CDS 6957780 6957868 6957780 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6958002 6958158 6958002 ID=MS.gene051552.t1.exon6;Parent=MS.gene051552.t1
chr1.3 CDS 6958002 6958158 6958002 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6958427 6958502 6958427 ID=MS.gene051552.t1.exon7;Parent=MS.gene051552.t1
chr1.3 CDS 6958427 6958502 6958427 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6958835 6958893 6958835 ID=MS.gene051552.t1.exon8;Parent=MS.gene051552.t1
chr1.3 CDS 6958835 6958893 6958835 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6958980 6959116 6958980 ID=MS.gene051552.t1.exon9;Parent=MS.gene051552.t1
chr1.3 CDS 6958980 6959116 6958980 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
chr1.3 exon 6959219 6959297 6959219 ID=MS.gene051552.t1.exon10;Parent=MS.gene051552.t1
chr1.3 CDS 6959219 6959297 6959219 ID=cds.MS.gene051552.t1;Parent=MS.gene051552.t1
Gene Sequence

>MS.gene051552

ATGGGAGAGGCACCAGAAATGTTTTACGTTAATGAGTTTGCAAAGGTTGTCCCTGAAGTTCAACCAAACCATGTCAACAACGTTGATGATTCTTCCACATGGTATGAGGAAATCATTGATGATGATCTCAAATGGTCCTTTAAACTCAACAGGTTCGTTATTTATCCTTTTTAATTTCCTCTGTTTTATATGATATAGTACATTATTACTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTAATTCATAATTTTCTTCTTATTTTTAACAGTGTGCTTCATAAAGCGATTAGTGAATACCAGGACATTGCTCTCTTGGATACAAAGCGTTTTGGAAAGGTTTGCAAGCTTTGATTCTTAAATAAGTACAAAAATACTACAAAAAGAATTAAAGTAACAACAAAATTTAGTATATTCCTTCAAAAAACAAAATTTAGTATATGTTTGGAATCACCGTAGATTTATCGAAATTACGAACCACCGTGATCGTGCCACACTCGTTGCGAATCAAAATATGAATTATTGATTCTATTTTTTTAATAGTAAAAAAATTATGTATTTCTTTCTTCAATAATACATAATTATTAGAAATAATAATTGTTAAAGTATTTTATATTTTATTTTTTGAATAGCAATTGCTAAGTATGTGATTCTTCCTCTAAAAAAAAGTATGTGATTGACTGATTGTTATTTATGCTGCATATAGGCGTTGATGCTTGATGGAAAGATGCAGAGTTCTGAAGCAGATGAATTCATTTATCATGAATGCTTGATTCATCCCTCTCTTTTATGTCATCCAAAGTAAGTTTGTTTTATAATATCAGGGGAGGATGTTATAGTTCTTTCTTTGTCTTTACTAATAAAAATGAAATATGAGTTTTTTTCTTTTTGGTCTGACGTTATGAGAATTGTCCATGTATATTAAAATGAAAAAAATTATGTCATTTCAATTTATATGTATAAATTCAAATTACTTTTTCTTTGTTTTCTATACTTTCTTATTCCTTGATGTAATATTCTCTTATTCCATTTTGTTTATAGTATTATAATATCTTTGTAATAAGTGAATAAAATAATCAATATTTGACAACTCATTTCAAAACCGCAAAAATATTGATAGCAACACTCAATTGAACATCGTTCATTTATCGGATGAAATTTATATAAACCACACCACTTTATATTGGACCTATGTATACAATGTTTATATCCAACAAGAGAGTATAAAAGAGTCTGACAAAGTAAGTGTGGTTAACCATCGTCATTTTAAAAAGAAAAAAAAAACTAGTAATTGGATATTTTTACAAAGGAAAAAACTTATGGTACATTTTTTTATATGTTTTTCGTATGATTCTAGTCTAAACTATATATGATTTTTTTCAAATTCATAATTTTTTTAAAGATTGTCAAAGTCATAAAAAATGTATTTTTAGTTAAGAATCATTAAAAAAAACCTAAAAAAATCCACCTATGTTTTTATCCTTTTACAAATTAATAGCACGCCATTATGCTTTTTTATAGACTTGATTGGGATTATGTTTGATGAAACCTTGGACTAATATGAAGAGGCATGTGTGGTAATATATTGGCAGCCCCAAGACGGTGTTTATAATGGGAGGTGGTGAAGGTTCAGCAGCTAGGGAAGCTCTCAAGCACAAGTCAATGGACAAAGTAGTTATGTGCGATATTGACAAGGTTACTTCTTTAAGTCATATTCTTATTTTTTGGGGGTTCAAAGTATGTCATCATATTCTACTTAGCCGTCCCTCAAATTGAAAACTTAATAATAATATCCATATTGATGTGGGCAGTGCCCCTTGTTTAAGAAAAATAAGGACACTTTGCTATATAATTTTAGTGGTTTTTAAGCATTTAAAATATTAATGTTGACTGTCTGTTTCATAACGAATTTTAGAAGTTTATAAAAATATATAAATGTTTGACAGCCATTTTGTCTCAATTTATTTGTTTTGATACATAAATTTAAAAACTCATGTTATAAATTTTATTATAATTTTTTTATGTATTTTCTCAATATACTCTATACCAGTATCCCTTAAATGACTTAAGTTTGCTAAGAAAAAATAAGTTGATAAAATTATATACTGATAATGGTCAAGTTTTTTTTTTTTAGGGAAGGTCAAGTTTTTTTTTTTAAAACAATAGTAATGGTCAAGTGTGTATAATAGAAAAATGTGTGATTATTGAACAAAATTTTCAATTAAAGTTGAACAAAAATATTTTGCTAAAAGGACAGACAAAATGGAACAGAGAGAGAATATTGGTAAGAATTTGTAAGACATGGTTCATTAATAACTTTAAAACTTATTCTAAGATTAATGTTATATTATATATGCTCAAATTAATAATTAATAAAGGACAGACAAAATGGAACAGAGAGAGAATATTGGTAAGAATTTGTAAGACATGGTTCATTAATAACTTTAAAACTTATTCTAAGATTAATGTTATATTATATATGCTCAAATTAATAATTAATAAAAAAAGTATTCCTGCAGGAGGTGGTGGATTTCTGCAGAAAATACCTGGTTGCAAATAAGGAGGCATTTGCTGACAAGAAGCTCGACCTTGTCATCAACTGTGCAAAGTAATAAGCTAGCTCATTTTGCAAATAGGAATTTATTTACTTTTGTGTCAAAATTACATTTTTTTTTTTTTGTGTGTGTGGATTTCATGGTGATTTTTTTACTTAAAAATTGCTTCACAATTTTGTGTTAAAGGGCTGAATTAGAGAAAAGAAAGGAGAAGTTTGATATCATTGTTGGAGATTTGGCTGACCCACTTGAAGATGGTCCTTGCTATCAGCTCTACACTAAGTCCTTCTATGAGAAAGCTGTGAAGCCTAAACTCACTGACAATGGCATTTTTGTGACCCAGGTAGACTTTTGAGGAACACACTTTTATGTTAGATAGTTGTTCAATAGGCTCCTAAATTTCGCTCCAGATTGTATCACAACTTCTGATCAACTGTTTTTGTGTAAAATCCGATTGAGTTGTAACTCCTGACTGGTATTCTTTTTCCAATCAAGTGAGCGATTTTGAAGAGTCTATTGAACAACCATATTTTTGTTACCACGCTTTTCTCACTACCCATCTAATCAATATTTAACATTTCACATTTTCCTTTTTGTATGTTTTCTTATAGGCTGGACCAGCAGGTATCTTTTCACACAAAGAGGTCTTCACCTCTATACACAACACCATAAAACAGGTCTTCAAATGTAAGAATAGATCTACCTCAAATCTTTTACTAGTAGGTGTTTGTTATAACCGGATCGAACCGGGTTGAATTTGTTATTGGCTCACTGCTTCGTTTTTTTTCTATCTTTTACACAAAAAATTTAACCCAATTGAACATAATTAGACTTTAGATGTCTCATCGTTCGATCTTCAGTTCAGTTTTTAAAACACTTGTTCAAACAAAACATGGACATTTCGTGACAATTCAATACATGAAATTGTGGGTGTCGCGCAATTTGACATTCGACTAAAATATGTTTTGCTTACGTGCTTTTGGTTTTCTTTTTCGTTCCTTCTTTCCCATTTGGTGCAGATGTGGTGGCATACTCGACTCATGTACCATCATTTGCTGATTCATGGGGATGGGTTATGGTATGCAAAAAAATATACTTCATGCTTTTTTTATTATGATTATTTGTGATTTTTTTTTTTATAAAATTTCTATGCTTTGAATTCAGGCTTCAGACCAACCAATATTGATTGATGCTGTGGAAATGGACAAAAGAATTGAAGCAAGAATAAAAGGAAAATTGCTCTATCTAGACGGTGCTTGGTTCCATTCATCTACCATCATGAATAAGACCGTGTCCAAATCGTAAGTGTACAAACCTCAAATTTAAAGGACCTCTGGTGTAATTTAACCATTTAACCGTGTCCATTTTTAAAGAATTTGACATCCAAATTATTATTGTTTCAGGCTGAAGAATGAAACTCATGTTTACACTGAAGATAATGCTAGATTTATTCCTGGTCATGGCATAGCATGTCGTCCCTAA

Protein sequence

>MS.gene051552.t1

MGEAPEMFYVNEFAKVVPEVQPNHVNNVDDSSTWYEEIIDDDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALMLDGKMQSSEADEFIYHECLIHPSLLCHPNPKTVFIMGGGEGSAAREALKHKSMDKVVMCDIDKEVVDFCRKYLVANKEAFADKKLDLVINCAKAELEKRKEKFDIIVGDLADPLEDGPCYQLYTKSFYEKAVKPKLTDNGIFVTQAGPAGIFSHKEVFTSIHNTIKQVFKYVVAYSTHVPSFADSWGWVMASDQPILIDAVEMDKRIEARIKGKLLYLDGAWFHSSTIMNKTVSKSLKNETHVYTEDNARFIPGHGIACRP