Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57437.t1 | XP_003601083.1 | 87.2 | 445 | 22 | 4 | 1 | 411 | 1 | 444 | 6.80E-209 | 736.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57437.t1 | G7J3K0 | 87.2 | 445 | 22 | 4 | 1 | 411 | 1 | 444 | 4.9e-209 | 736.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene57437 | 0.842145 | 3.09E-58 | -1.69E-46 |
| MS.gene052142 | MS.gene57437 | 0.806114 | 9.63E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene57437 | 0.804094 | 2.55E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene57437 | 0.822926 | 1.82E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57437.t1 | MTR_3g072840 | 87.191 | 445 | 22 | 4 | 1 | 411 | 1 | 444 | 0.0 | 731 |
| MS.gene57437.t1 | MTR_3g072830 | 51.794 | 446 | 171 | 8 | 1 | 407 | 1 | 441 | 5.62e-138 | 402 |
| MS.gene57437.t1 | MTR_3g007470 | 59.885 | 349 | 105 | 4 | 96 | 411 | 36 | 382 | 2.73e-128 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57437.t1 | AT2G41705 | 48.449 | 419 | 181 | 6 | 25 | 408 | 37 | 455 | 8.36e-109 | 328 |
| MS.gene57437.t1 | AT2G41705 | 48.449 | 419 | 181 | 6 | 25 | 408 | 37 | 455 | 8.36e-109 | 328 |
| MS.gene57437.t1 | AT2G41705 | 48.449 | 419 | 181 | 6 | 25 | 408 | 37 | 455 | 8.36e-109 | 328 |
| MS.gene57437.t1 | AT2G41705 | 48.449 | 419 | 181 | 6 | 25 | 408 | 37 | 455 | 8.36e-109 | 328 |
Find 86 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATCTGCCATCAAATA+TGG | 0.217091 | 3.3:-63113328 | MS.gene57437:intron |
| AGGACTTCAATTTGGTCTAT+TGG | 0.243981 | 3.3:-63111702 | MS.gene57437:CDS |
| TGTCGATCATCATTGGTTTC+TGG | 0.244597 | 3.3:-63112333 | MS.gene57437:CDS |
| TGGTGATATTAGCTTTGTTA+TGG | 0.283155 | 3.3:-63112184 | MS.gene57437:CDS |
| CCCATCTTTGTTTCAACAAA+TGG | 0.283826 | 3.3:-63114004 | MS.gene57437:CDS |
| GCCTGCATTGTTGGACCTCT+TGG | 0.293298 | 3.3:-63112095 | MS.gene57437:CDS |
| GGACTTAACGAGTGCGAAAT+TGG | 0.296305 | 3.3:-63112043 | MS.gene57437:intron |
| TCATTTGGACCAAGTGGTTT+TGG | 0.299453 | 3.3:-63113378 | MS.gene57437:CDS |
| TGATAGAAAACAAGCATCTT+TGG | 0.307803 | 3.3:-63111634 | MS.gene57437:CDS |
| GGACTTCAATTTGGTCTATT+GGG | 0.318154 | 3.3:-63111701 | MS.gene57437:CDS |
| CTCACTCACATTCTTGAAAC+AGG | 0.318173 | 3.3:+63111542 | None:intergenic |
| ACAATATAGTTATTATTAGA+TGG | 0.318561 | 3.3:+63114046 | None:intergenic |
| TTATATATCAAACCAGAAAA+TGG | 0.319807 | 3.3:-63114109 | MS.gene57437:CDS |
| GTGATAACAGGACTTCAATT+TGG | 0.320323 | 3.3:-63111710 | MS.gene57437:CDS |
| ACCAAACCATCCCATCAAAA+AGG | 0.332116 | 3.3:+63112781 | None:intergenic |
| TACTTATTGCAAAAGTCATT+TGG | 0.339763 | 3.3:-63113393 | MS.gene57437:CDS |
| GGTGATATTAGCTTTGTTAT+GGG | 0.342133 | 3.3:-63112183 | MS.gene57437:CDS |
| GGCAATTCATGTTCCATTGC+AGG | 0.342935 | 3.3:+63114070 | None:intergenic |
| CACTGGATCTTGTCTTTGCT+CGG | 0.345396 | 3.3:-63112629 | MS.gene57437:CDS |
| TGTTTCGTGTCTAACTCATT+TGG | 0.377439 | 3.3:-63113798 | MS.gene57437:CDS |
| TCCATTTGTTGAAACAAAGA+TGG | 0.386494 | 3.3:+63114003 | None:intergenic |
| GGTCTAACAACCGGCTACTT+AGG | 0.389772 | 3.3:-63112710 | MS.gene57437:CDS |
| TCTTTGCTCGGCTTTGTACT+AGG | 0.391256 | 3.3:-63112617 | MS.gene57437:intron |
| AATTGTGATACTGTGATAAC+AGG | 0.402053 | 3.3:-63111722 | MS.gene57437:CDS |
| TGACAGCTTCCTTCGTCAAT+TGG | 0.430603 | 3.3:-63112225 | MS.gene57437:CDS |
| AAAACTTACTGATTTCTTGA+GGG | 0.431062 | 3.3:+63111940 | None:intergenic |
| GTTGGGGTTCTGCAGTTAGC+AGG | 0.434224 | 3.3:-63114258 | MS.gene57437:CDS |
| CGTGAGTGTGGTTCAGCTGC+AGG | 0.439210 | 3.3:-63114187 | MS.gene57437:CDS |
| CATGGAGCGAACGAGCAGTT+GGG | 0.449685 | 3.3:-63114275 | MS.gene57437:CDS |
| GCCTAACAACTTTCAGCGGC+TGG | 0.451556 | 3.3:-63112685 | MS.gene57437:CDS |
| TCCAGCCGCTGAAAGTTGTT+AGG | 0.453775 | 3.3:+63112684 | None:intergenic |
| CTGGTTTGATATATAAAGAC+AGG | 0.458399 | 3.3:+63114116 | None:intergenic |
| GTAGCATTGTCGATCATCAT+TGG | 0.460693 | 3.3:-63112340 | MS.gene57437:CDS |
| TTGTGGTTAGCCTGCATTGT+TGG | 0.460887 | 3.3:-63112104 | MS.gene57437:CDS |
| ATGCTCGAGCTCAGTGTCGC+TGG | 0.460917 | 3.3:-63112653 | MS.gene57437:CDS |
| CGAAACAAATTCCAGTAGCT+TGG | 0.472897 | 3.3:+63113814 | None:intergenic |
| GTCTAACAACCGGCTACTTA+GGG | 0.474314 | 3.3:-63112709 | MS.gene57437:CDS |
| CTAGCCATTGGTCTAACAAC+CGG | 0.476478 | 3.3:-63112719 | MS.gene57437:CDS |
| GAGAGGCGAACCATATTTGA+TGG | 0.476823 | 3.3:+63113318 | None:intergenic |
| AGCTCAGTGTCGCTGGACAC+TGG | 0.485522 | 3.3:-63112646 | MS.gene57437:CDS |
| CATGAAGTTACCCAAGCTAC+TGG | 0.489022 | 3.3:-63113825 | MS.gene57437:CDS |
| TAATATCACCAACAACACTA+TGG | 0.492265 | 3.3:+63112196 | None:intergenic |
| GAGAGCATTTGTCTATGCTA+TGG | 0.494452 | 3.3:-63111612 | MS.gene57437:CDS |
| AAAAGAAAATGAAACGCAAA+TGG | 0.498184 | 3.3:+63111586 | None:intergenic |
| CCAACTGCTCGTTCGCTCCA+TGG | 0.502807 | 3.3:+63114276 | None:intergenic |
| ATGGGGTGTCAGTAGTGCTT+TGG | 0.503257 | 3.3:-63112165 | MS.gene57437:CDS |
| GAAACAAATTCCAGTAGCTT+GGG | 0.506298 | 3.3:+63113815 | None:intergenic |
| CCATGGAGCGAACGAGCAGT+TGG | 0.508369 | 3.3:-63114276 | MS.gene57437:CDS |
| CTTTGTTTCAACAAATGGAA+AGG | 0.511711 | 3.3:-63113999 | MS.gene57437:CDS |
| CATTGGTTTCTGGACGGCGA+AGG | 0.512919 | 3.3:-63112323 | MS.gene57437:CDS |
| GGTAGTGACCATAGTGTTGT+TGG | 0.519775 | 3.3:-63112204 | MS.gene57437:CDS |
| GTGATATTAGCTTTGTTATG+GGG | 0.520721 | 3.3:-63112182 | MS.gene57437:CDS |
| AACGAGTGCGAAATTGGAGG+AGG | 0.526946 | 3.3:-63112037 | MS.gene57437:intron |
| GGAGGAAGGAAAAGTGAGAG+TGG | 0.527956 | 3.3:-63114148 | MS.gene57437:CDS |
| CCATTTGTTGAAACAAAGAT+GGG | 0.530182 | 3.3:+63114004 | None:intergenic |
| CCATATTTGATGGCAGATCA+AGG | 0.532230 | 3.3:+63113328 | None:intergenic |
| GTATCTGAACATCTAGCCAT+TGG | 0.532584 | 3.3:-63112731 | MS.gene57437:CDS |
| ATTGGTTTCTGGACGGCGAA+GGG | 0.538719 | 3.3:-63112322 | MS.gene57437:CDS |
| TGTTTCTGCTGCTTGTATCA+CGG | 0.540208 | 3.3:-63111975 | MS.gene57437:CDS |
| GGACGGCGAAGGGATTCAAA+TGG | 0.542568 | 3.3:-63112312 | MS.gene57437:intron |
| ACCAAGAGGTCCAACAATGC+AGG | 0.546644 | 3.3:+63112094 | None:intergenic |
| CTGGTCACGCCAAAACCACT+TGG | 0.550500 | 3.3:+63113369 | None:intergenic |
| CAAAAGTCATTTGGACCAAG+TGG | 0.552223 | 3.3:-63113384 | MS.gene57437:CDS |
| ACTTACTGATTTCTTGAGGG+TGG | 0.554227 | 3.3:+63111943 | None:intergenic |
| TGTTAGGCTCCCTAAGTAGC+CGG | 0.558390 | 3.3:+63112700 | None:intergenic |
| GGCTAGATGTTCAGATACAT+AGG | 0.562753 | 3.3:+63112736 | None:intergenic |
| TATATCGAAACTAAGCTGGA+AGG | 0.568673 | 3.3:-63112249 | MS.gene57437:intron |
| GGAAGGAAAAGTGAGAGTGG+TGG | 0.583294 | 3.3:-63114145 | MS.gene57437:CDS |
| GATACAAGCAGCAGAAACAT+TGG | 0.593081 | 3.3:+63111979 | None:intergenic |
| TTGTTGAAACAAAGATGGGA+AGG | 0.595444 | 3.3:+63114008 | None:intergenic |
| AAGATGGGAAGGTGTTCTTG+TGG | 0.616586 | 3.3:+63114019 | None:intergenic |
| ACGAGTGCGAAATTGGAGGA+GGG | 0.618522 | 3.3:-63112036 | MS.gene57437:intron |
| CTTAACGAGTGCGAAATTGG+AGG | 0.623590 | 3.3:-63112040 | MS.gene57437:intron |
| ATTTGTGTACAATCCTGCAA+TGG | 0.626316 | 3.3:-63114083 | MS.gene57437:CDS |
| GGGAGCCTAACAACTTTCAG+CGG | 0.627758 | 3.3:-63112689 | MS.gene57437:CDS |
| ATGGAGCGAACGAGCAGTTG+GGG | 0.627866 | 3.3:-63114274 | MS.gene57437:CDS |
| AACCTAAGCCATACACCAAG+AGG | 0.629036 | 3.3:+63112080 | None:intergenic |
| GATCATCATTGGTTTCTGGA+CGG | 0.641979 | 3.3:-63112329 | MS.gene57437:CDS |
| GTAGCCGGTTGTTAGACCAA+TGG | 0.643579 | 3.3:+63112715 | None:intergenic |
| TCACTCACATTCTTGAAACA+GGG | 0.660582 | 3.3:+63111543 | None:intergenic |
| ATATAGTTATTATTAGATGG+CGG | 0.673569 | 3.3:+63114049 | None:intergenic |
| GTGTGTCAAAATGTAGATGT+TGG | 0.674681 | 3.3:-63114229 | MS.gene57437:CDS |
| GAAGCTGAGAATCGTGAGTG+TGG | 0.687844 | 3.3:-63114199 | MS.gene57437:CDS |
| TAAATATGCAGGTCTTAACG+AGG | 0.700815 | 3.3:-63113416 | MS.gene57437:intron |
| TGGTCACTACCAATTGACGA+AGG | 0.735981 | 3.3:+63112216 | None:intergenic |
| GTGGTGGTGAAGCTCAGTTG+TGG | 0.736786 | 3.3:-63112121 | MS.gene57437:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATAGTTATTATTAGA+TGG | + | chr3.3:63111778-63111797 | None:intergenic | 15.0% |
| !! | ATAATTCCTAAGATTAAAAA+TGG | - | chr3.3:63112790-63112809 | MS.gene57437:CDS | 15.0% |
| !! | TAATATTTCAAAATAGTCTA+TGG | - | chr3.3:63113962-63113981 | MS.gene57437:intron | 15.0% |
| !! | TATATCATTAACAACAAAAA+AGG | + | chr3.3:63111892-63111911 | None:intergenic | 15.0% |
| !! | TTTAATAAAATGCATTTGAT+AGG | + | chr3.3:63112946-63112965 | None:intergenic | 15.0% |
| !!! | TTTATTTCTTTGAATTCTAA+AGG | - | chr3.3:63112550-63112569 | MS.gene57437:intron | 15.0% |
| !! | AATTTCAACAACAAATTAGA+CGG | - | chr3.3:63112209-63112228 | MS.gene57437:CDS | 20.0% |
| !! | AGAAAGAAAAAAAAAACTCA+AGG | + | chr3.3:63112095-63112114 | None:intergenic | 20.0% |
| !! | ATATAGTTATTATTAGATGG+CGG | + | chr3.3:63111775-63111794 | None:intergenic | 20.0% |
| !! | ATGTGTTAAATTATGTTTAG+TGG | - | chr3.3:63112246-63112265 | MS.gene57437:intron | 20.0% |
| !! | GAAATAAATGAGTTCAAAAA+TGG | - | chr3.3:63113678-63113697 | MS.gene57437:intron | 20.0% |
| !! | TAAAAGGAGAAAAATAATCA+TGG | - | chr3.3:63112577-63112596 | MS.gene57437:intron | 20.0% |
| !! | TGATTAATGAATATAACTAG+TGG | - | chr3.3:63112270-63112289 | MS.gene57437:intron | 20.0% |
| !! | TGCATATTTATTATGACAAT+CGG | + | chr3.3:63112395-63112414 | None:intergenic | 20.0% |
| !! | TTATATATCAAACCAGAAAA+TGG | - | chr3.3:63111712-63111731 | MS.gene57437:CDS | 20.0% |
| !!! | ATAGTTCCATTTTTAATCTT+AGG | + | chr3.3:63112799-63112818 | None:intergenic | 20.0% |
| !!! | ATGCTTTTACTTTGTTTTTT+AGG | - | chr3.3:63111960-63111979 | MS.gene57437:CDS | 20.0% |
| !!! | ATGTTAGTAAATTTAGAGTA+TGG | - | chr3.3:63112613-63112632 | MS.gene57437:intron | 20.0% |
| ! | AAAAGAAAATGAAACGCAAA+TGG | + | chr3.3:63114238-63114257 | None:intergenic | 25.0% |
| ! | AAAGCAATTCAAGTCTTTAT+TGG | - | chr3.3:63112683-63112702 | MS.gene57437:CDS | 25.0% |
| ! | AAATAATCATGGTAGCTATA+AGG | - | chr3.3:63112588-63112607 | MS.gene57437:intron | 25.0% |
| ! | ATAAATGAGTTCAAAAATGG+TGG | - | chr3.3:63113681-63113700 | MS.gene57437:intron | 25.0% |
| ! | CATATTAAGAAGAGTTTGTA+AGG | - | chr3.3:63113431-63113450 | MS.gene57437:intron | 25.0% |
| ! | GATTGTCATAATAAATATGC+AGG | - | chr3.3:63112394-63112413 | MS.gene57437:intron | 25.0% |
| ! | GGAAATATGTTAAATGAGTT+TGG | - | chr3.3:63112159-63112178 | MS.gene57437:CDS | 25.0% |
| ! | TAATGAATATAACTAGTGGA+TGG | - | chr3.3:63112274-63112293 | MS.gene57437:intron | 25.0% |
| ! | TACTTATTGCAAAAGTCATT+TGG | - | chr3.3:63112428-63112447 | MS.gene57437:intron | 25.0% |
| ! | TTATCATGATGACTAAATCT+TGG | - | chr3.3:63112636-63112655 | MS.gene57437:CDS | 25.0% |
| ! | TTTCTTGATGTTAAAGAGTA+TGG | - | chr3.3:63112127-63112146 | MS.gene57437:CDS | 25.0% |
| !! | ATTGCTATAAACCTGATTTT+TGG | - | chr3.3:63114059-63114078 | MS.gene57437:CDS | 25.0% |
| !! | ATTTGCGTTTCATTTTCTTT+TGG | - | chr3.3:63114237-63114256 | MS.gene57437:CDS | 25.0% |
| !! | GAATTCTAAAGGAGAATAAA+AGG | - | chr3.3:63112561-63112580 | MS.gene57437:intron | 25.0% |
| !! | GAATTTTTGACACATGATTT+TGG | - | chr3.3:63114022-63114041 | MS.gene57437:CDS | 25.0% |
| !! | TTTGCGTTTCATTTTCTTTT+GGG | - | chr3.3:63114238-63114257 | MS.gene57437:CDS | 25.0% |
| !!! | AAAAACTTACTGATTTCTTG+AGG | + | chr3.3:63113885-63113904 | None:intergenic | 25.0% |
| !!! | AAAACTTACTGATTTCTTGA+GGG | + | chr3.3:63113884-63113903 | None:intergenic | 25.0% |
| !!! | ACTTCTATTTTTGCTTTCTT+AGG | - | chr3.3:63112897-63112916 | MS.gene57437:intron | 25.0% |
| !!! | TGGTTTGGTTTTGTTTTTAA+AGG | - | chr3.3:63113054-63113073 | MS.gene57437:intron | 25.0% |
| !!! | TTACTTTGTTTTTTAGGTTC+TGG | - | chr3.3:63111966-63111985 | MS.gene57437:CDS | 25.0% |
| AAGAAGAGTTTGTAAGGAAA+TGG | - | chr3.3:63113437-63113456 | MS.gene57437:intron | 30.0% | |
| AATTGTGATACTGTGATAAC+AGG | - | chr3.3:63114099-63114118 | MS.gene57437:CDS | 30.0% | |
| ATAAGTGCGATTTAAAGACT+AGG | - | chr3.3:63113229-63113248 | MS.gene57437:intron | 30.0% | |
| TAATATCACCAACAACACTA+TGG | + | chr3.3:63113628-63113647 | None:intergenic | 30.0% | |
| TGATAGAAAACAAGCATCTT+TGG | - | chr3.3:63114187-63114206 | MS.gene57437:CDS | 30.0% | |
| TGTGAAGACATAAAACAAGT+AGG | - | chr3.3:63111850-63111869 | MS.gene57437:intron | 30.0% | |
| TTGCTTTCTTAGGATCAATA+TGG | - | chr3.3:63112907-63112926 | MS.gene57437:intron | 30.0% | |
| ! | AAATTGTACTAGTTTCCTCA+CGG | - | chr3.3:63111930-63111949 | MS.gene57437:intron | 30.0% |
| ! | CCATTTGTTGAAACAAAGAT+GGG | + | chr3.3:63111820-63111839 | None:intergenic | 30.0% |
| ! | CTGGTTTGATATATAAAGAC+AGG | + | chr3.3:63111708-63111727 | None:intergenic | 30.0% |
| ! | CTTTGTTTCAACAAATGGAA+AGG | - | chr3.3:63111822-63111841 | MS.gene57437:intron | 30.0% |
| ! | CTTTTACTCATTTTCCAGAT+TGG | - | chr3.3:63113015-63113034 | MS.gene57437:intron | 30.0% |
| ! | CTTTTATATCGAAACTAAGC+TGG | - | chr3.3:63113568-63113587 | MS.gene57437:intron | 30.0% |
| ! | GTAAGGAAATGGAATTTTGT+AGG | - | chr3.3:63113448-63113467 | MS.gene57437:intron | 30.0% |
| ! | TACACAAATGTTCCATTTTC+TGG | + | chr3.3:63111727-63111746 | None:intergenic | 30.0% |
| ! | TCCATTTGTTGAAACAAAGA+TGG | + | chr3.3:63111821-63111840 | None:intergenic | 30.0% |
| ! | TCTAATCTCATTTTACAGCA+TGG | + | chr3.3:63113378-63113397 | None:intergenic | 30.0% |
| ! | TTTTTGACACATGATTTTGG+AGG | - | chr3.3:63114025-63114044 | MS.gene57437:CDS | 30.0% |
| !! | ACTTGAATTGCTTTTCAATC+AGG | + | chr3.3:63112677-63112696 | None:intergenic | 30.0% |
| !! | GGTGATATTAGCTTTGTTAT+GGG | - | chr3.3:63113638-63113657 | MS.gene57437:intron | 30.0% |
| !! | GTGATATTAGCTTTGTTATG+GGG | - | chr3.3:63113639-63113658 | MS.gene57437:intron | 30.0% |
| !! | TGGTGATATTAGCTTTGTTA+TGG | - | chr3.3:63113637-63113656 | MS.gene57437:intron | 30.0% |
| !!! | TTAGGTTTTTTCTTAGCTAC+TGG | - | chr3.3:63113757-63113776 | MS.gene57437:intron | 30.0% |
| !!! | TTTTGAAATGGCTTCGATTT+GGG | - | chr3.3:63113809-63113828 | MS.gene57437:CDS | 30.0% |
| !!! | TTTTTGAAATGGCTTCGATT+TGG | - | chr3.3:63113808-63113827 | MS.gene57437:CDS | 30.0% |
| AAAATGGAACTATCTGTTCC+AGG | - | chr3.3:63112806-63112825 | MS.gene57437:intron | 35.0% | |
| AATGAGTTCAAAAATGGTGG+TGG | - | chr3.3:63113684-63113703 | MS.gene57437:intron | 35.0% | |
| AGGACTTCAATTTGGTCTAT+TGG | - | chr3.3:63114119-63114138 | MS.gene57437:CDS | 35.0% | |
| ATTTGTGTACAATCCTGCAA+TGG | - | chr3.3:63111738-63111757 | MS.gene57437:intron | 35.0% | |
| CTACTCGACGCAATTAAATT+AGG | - | chr3.3:63112333-63112352 | MS.gene57437:CDS | 35.0% | |
| GAAACAAATTCCAGTAGCTT+GGG | + | chr3.3:63112009-63112028 | None:intergenic | 35.0% | |
| GCTGCATTAACTAACATGTT+TGG | - | chr3.3:63112710-63112729 | MS.gene57437:CDS | 35.0% | |
| GGACTTCAATTTGGTCTATT+GGG | - | chr3.3:63114120-63114139 | MS.gene57437:CDS | 35.0% | |
| GTAAAAAACGGTATGATCAC+TGG | + | chr3.3:63112474-63112493 | None:intergenic | 35.0% | |
| GTGATAACAGGACTTCAATT+TGG | - | chr3.3:63114111-63114130 | MS.gene57437:CDS | 35.0% | |
| GTGTGTCAAAATGTAGATGT+TGG | - | chr3.3:63111592-63111611 | MS.gene57437:CDS | 35.0% | |
| TAAATATGCAGGTCTTAACG+AGG | - | chr3.3:63112405-63112424 | MS.gene57437:intron | 35.0% | |
| TAAGAATCAGTGAATGCAGA+AGG | + | chr3.3:63112528-63112547 | None:intergenic | 35.0% | |
| TATATCGAAACTAAGCTGGA+AGG | - | chr3.3:63113572-63113591 | MS.gene57437:intron | 35.0% | |
| TGGCAGATCAAGGTAAAAAA+CGG | + | chr3.3:63112486-63112505 | None:intergenic | 35.0% | |
| TGTTTCGTGTCTAACTCATT+TGG | - | chr3.3:63112023-63112042 | MS.gene57437:CDS | 35.0% | |
| TTGTTGAAACAAAGATGGGA+AGG | + | chr3.3:63111816-63111835 | None:intergenic | 35.0% | |
| ! | CCCATCTTTGTTTCAACAAA+TGG | - | chr3.3:63111817-63111836 | MS.gene57437:intron | 35.0% |
| ! | TAAAGAGTATGGTAGATGCT+AGG | - | chr3.3:63112138-63112157 | MS.gene57437:CDS | 35.0% |
| !! | ATATAGCTTTTCAAGGAGGA+AGG | - | chr3.3:63111659-63111678 | MS.gene57437:CDS | 35.0% |
| !! | CAGATTGGTTCCTTTTTGAT+GGG | - | chr3.3:63113030-63113049 | MS.gene57437:intron | 35.0% |
| !! | CTAACTCATTTGGCTGTTTT+TGG | - | chr3.3:63112033-63112052 | MS.gene57437:CDS | 35.0% |
| !!! | ATAAACCTGATTTTTGGTGC+AGG | - | chr3.3:63114065-63114084 | MS.gene57437:CDS | 35.0% |
| AATGCTTCAAGCTCAAAACC+TGG | + | chr3.3:63112827-63112846 | None:intergenic | 40.0% | |
| ACCAAACCATCCCATCAAAA+AGG | + | chr3.3:63113043-63113062 | None:intergenic | 40.0% | |
| ATTCACCTGCACCAAAAATC+AGG | + | chr3.3:63114073-63114092 | None:intergenic | 40.0% | |
| CAAAAGTCATTTGGACCAAG+TGG | - | chr3.3:63112437-63112456 | MS.gene57437:intron | 40.0% | |
| CCATCAAAAAGGAACCAATC+TGG | + | chr3.3:63113032-63113051 | None:intergenic | 40.0% | |
| CCTTGATCTGCCATCAAATA+TGG | - | chr3.3:63112493-63112512 | MS.gene57437:intron | 40.0% | |
| CGAAACAAATTCCAGTAGCT+TGG | + | chr3.3:63112010-63112029 | None:intergenic | 40.0% | |
| CGACGCAATTAAATTAGGAG+AGG | - | chr3.3:63112338-63112357 | MS.gene57437:CDS | 40.0% | |
| GATACAAGCAGCAGAAACAT+TGG | + | chr3.3:63113845-63113864 | None:intergenic | 40.0% | |
| GGCTAGATGTTCAGATACAT+AGG | + | chr3.3:63113088-63113107 | None:intergenic | 40.0% | |
| GTAGCATTGTCGATCATCAT+TGG | - | chr3.3:63113481-63113500 | MS.gene57437:intron | 40.0% | |
| GTATCTGAACATCTAGCCAT+TGG | - | chr3.3:63113090-63113109 | MS.gene57437:intron | 40.0% | |
| TGCGTCGAGTAGATGATTAA+TGG | + | chr3.3:63112325-63112344 | None:intergenic | 40.0% | |
| ! | CCATATTTGATGGCAGATCA+AGG | + | chr3.3:63112496-63112515 | None:intergenic | 40.0% |
| ! | GCAGGAGATATAGCTTTTCA+AGG | - | chr3.3:63111652-63111671 | MS.gene57437:CDS | 40.0% |
| ! | TCATTTGGACCAAGTGGTTT+TGG | - | chr3.3:63112443-63112462 | MS.gene57437:intron | 40.0% |
| ! | TCCTTTTTGATGGGATGGTT+TGG | - | chr3.3:63113039-63113058 | MS.gene57437:intron | 40.0% |
| ! | TGTTTCTGCTGCTTGTATCA+CGG | - | chr3.3:63113846-63113865 | MS.gene57437:intron | 40.0% |
| ! | TTGGTTCCTTTTTGATGGGA+TGG | - | chr3.3:63113034-63113053 | MS.gene57437:intron | 40.0% |
| !! | ACTTACTGATTTCTTGAGGG+TGG | + | chr3.3:63113881-63113900 | None:intergenic | 40.0% |
| !! | CCAGATTGGTTCCTTTTTGA+TGG | - | chr3.3:63113029-63113048 | MS.gene57437:intron | 40.0% |
| !! | GAGAGCATTTGTCTATGCTA+TGG | - | chr3.3:63114209-63114228 | MS.gene57437:CDS | 40.0% |
| !! | GATCATCATTGGTTTCTGGA+CGG | - | chr3.3:63113492-63113511 | MS.gene57437:intron | 40.0% |
| !! | GGAGATATAGCTTTTCAAGG+AGG | - | chr3.3:63111655-63111674 | MS.gene57437:CDS | 40.0% |
| !! | TGTCGATCATCATTGGTTTC+TGG | - | chr3.3:63113488-63113507 | MS.gene57437:intron | 40.0% |
| !! | TTGGAGGAGGGTTTTTGAAA+TGG | - | chr3.3:63113797-63113816 | MS.gene57437:CDS | 40.0% |
| !!! | TGGCTGTTTTTGGCATTCTT+GGG | - | chr3.3:63112043-63112062 | MS.gene57437:intron | 40.0% |
| !!! | TTGGCTGTTTTTGGCATTCT+TGG | - | chr3.3:63112042-63112061 | MS.gene57437:intron | 40.0% |
| AACCTAAGCCATACACCAAG+AGG | + | chr3.3:63113744-63113763 | None:intergenic | 45.0% | |
| ATCAGTGAATGCAGAAGGAG+AGG | + | chr3.3:63112523-63112542 | None:intergenic | 45.0% | |
| CACTGGATCTTGTCTTTGCT+CGG | - | chr3.3:63113192-63113211 | MS.gene57437:intron | 45.0% | |
| CATGAAGTTACCCAAGCTAC+TGG | - | chr3.3:63111996-63112015 | MS.gene57437:CDS | 45.0% | |
| CTTAACGAGTGCGAAATTGG+AGG | - | chr3.3:63113781-63113800 | MS.gene57437:CDS | 45.0% | |
| GAGAGGCGAACCATATTTGA+TGG | + | chr3.3:63112506-63112525 | None:intergenic | 45.0% | |
| GGACTTAACGAGTGCGAAAT+TGG | - | chr3.3:63113778-63113797 | MS.gene57437:CDS | 45.0% | |
| GGCAATTCATGTTCCATTGC+AGG | + | chr3.3:63111754-63111773 | None:intergenic | 45.0% | |
| GGTAGTGACCATAGTGTTGT+TGG | - | chr3.3:63113617-63113636 | MS.gene57437:intron | 45.0% | |
| GTCTAACAACCGGCTACTTA+GGG | - | chr3.3:63113112-63113131 | MS.gene57437:intron | 45.0% | |
| TGACAGCTTCCTTCGTCAAT+TGG | - | chr3.3:63113596-63113615 | MS.gene57437:intron | 45.0% | |
| TGGTCACTACCAATTGACGA+AGG | + | chr3.3:63113608-63113627 | None:intergenic | 45.0% | |
| ! | CTAGCCATTGGTCTAACAAC+CGG | - | chr3.3:63113102-63113121 | MS.gene57437:intron | 45.0% |
| ! | TACTAGTTTCCTCACGGTTG+AGG | - | chr3.3:63111936-63111955 | MS.gene57437:intron | 45.0% |
| ! | TCTTTGCTCGGCTTTGTACT+AGG | - | chr3.3:63113204-63113223 | MS.gene57437:intron | 45.0% |
| ! | TTGTTGGACCTCTTGGTGTA+TGG | - | chr3.3:63113733-63113752 | MS.gene57437:intron | 45.0% |
| !! | AAGATGGGAAGGTGTTCTTG+TGG | + | chr3.3:63111805-63111824 | None:intergenic | 45.0% |
| !! | TTGTGGTTAGCCTGCATTGT+TGG | - | chr3.3:63113717-63113736 | MS.gene57437:intron | 45.0% |
| !!! | GGCTGTTTTTGGCATTCTTG+GGG | - | chr3.3:63112044-63112063 | MS.gene57437:intron | 45.0% |
| AACGAGTGCGAAATTGGAGG+AGG | - | chr3.3:63113784-63113803 | MS.gene57437:CDS | 50.0% | |
| ACCAAGAGGTCCAACAATGC+AGG | + | chr3.3:63113730-63113749 | None:intergenic | 50.0% | |
| ACGAGTGCGAAATTGGAGGA+GGG | - | chr3.3:63113785-63113804 | MS.gene57437:CDS | 50.0% | |
| GAAGCTGAGAATCGTGAGTG+TGG | - | chr3.3:63111622-63111641 | MS.gene57437:CDS | 50.0% | |
| GGAAGGAAAAGTGAGAGTGG+TGG | - | chr3.3:63111676-63111695 | MS.gene57437:CDS | 50.0% | |
| GGAGGAAGGAAAAGTGAGAG+TGG | - | chr3.3:63111673-63111692 | MS.gene57437:CDS | 50.0% | |
| GGGAGCCTAACAACTTTCAG+CGG | - | chr3.3:63113132-63113151 | MS.gene57437:intron | 50.0% | |
| GGTCTAACAACCGGCTACTT+AGG | - | chr3.3:63113111-63113130 | MS.gene57437:intron | 50.0% | |
| GTAGCCGGTTGTTAGACCAA+TGG | + | chr3.3:63113109-63113128 | None:intergenic | 50.0% | |
| TCCAGCCGCTGAAAGTTGTT+AGG | + | chr3.3:63113140-63113159 | None:intergenic | 50.0% | |
| TGTTAGGCTCCCTAAGTAGC+CGG | + | chr3.3:63113124-63113143 | None:intergenic | 50.0% | |
| ! | AAAAGCATGCCTCAACCGTG+AGG | + | chr3.3:63111948-63111967 | None:intergenic | 50.0% |
| ! | ATGGGGTGTCAGTAGTGCTT+TGG | - | chr3.3:63113656-63113675 | MS.gene57437:intron | 50.0% |
| ! | ATTGGTTTCTGGACGGCGAA+GGG | - | chr3.3:63113499-63113518 | MS.gene57437:intron | 50.0% |
| ! | GACCTCTTGGTGTATGGCTT+AGG | - | chr3.3:63113739-63113758 | MS.gene57437:intron | 50.0% |
| ATGGAGCGAACGAGCAGTTG+GGG | - | chr3.3:63111547-63111566 | MS.gene57437:CDS | 55.0% | |
| CTGGTCACGCCAAAACCACT+TGG | + | chr3.3:63112455-63112474 | None:intergenic | 55.0% | |
| GCCTAACAACTTTCAGCGGC+TGG | - | chr3.3:63113136-63113155 | MS.gene57437:intron | 55.0% | |
| GCCTGCATTGTTGGACCTCT+TGG | - | chr3.3:63113726-63113745 | MS.gene57437:intron | 55.0% | |
| GGACGGCGAAGGGATTCAAA+TGG | - | chr3.3:63113509-63113528 | MS.gene57437:intron | 55.0% | |
| GTTGGGGTTCTGCAGTTAGC+AGG | - | chr3.3:63111563-63111582 | MS.gene57437:CDS | 55.0% | |
| ! | GTGGTGGTGAAGCTCAGTTG+TGG | - | chr3.3:63113700-63113719 | MS.gene57437:intron | 55.0% |
| !! | CATTGGTTTCTGGACGGCGA+AGG | - | chr3.3:63113498-63113517 | MS.gene57437:intron | 55.0% |
| ATGCTCGAGCTCAGTGTCGC+TGG | - | chr3.3:63113168-63113187 | MS.gene57437:intron | 60.0% | |
| CGTGAGTGTGGTTCAGCTGC+AGG | - | chr3.3:63111634-63111653 | MS.gene57437:CDS | 60.0% | |
| ! | AGCTCAGTGTCGCTGGACAC+TGG | - | chr3.3:63113175-63113194 | MS.gene57437:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 63111547 | 63114296 | 63111547 | ID=MS.gene57437 |
| chr3.3 | mRNA | 63111547 | 63114296 | 63111547 | ID=MS.gene57437.t1;Parent=MS.gene57437 |
| chr3.3 | exon | 63113976 | 63114296 | 63113976 | ID=MS.gene57437.t1.exon1;Parent=MS.gene57437.t1 |
| chr3.3 | CDS | 63113976 | 63114296 | 63113976 | ID=cds.MS.gene57437.t1;Parent=MS.gene57437.t1 |
| chr3.3 | exon | 63113778 | 63113861 | 63113778 | ID=MS.gene57437.t1.exon2;Parent=MS.gene57437.t1 |
| chr3.3 | CDS | 63113778 | 63113861 | 63113778 | ID=cds.MS.gene57437.t1;Parent=MS.gene57437.t1 |
| chr3.3 | exon | 63113329 | 63113427 | 63113329 | ID=MS.gene57437.t1.exon3;Parent=MS.gene57437.t1 |
| chr3.3 | CDS | 63113329 | 63113427 | 63113329 | ID=cds.MS.gene57437.t1;Parent=MS.gene57437.t1 |
| chr3.3 | exon | 63112618 | 63112810 | 63112618 | ID=MS.gene57437.t1.exon4;Parent=MS.gene57437.t1 |
| chr3.3 | CDS | 63112618 | 63112810 | 63112618 | ID=cds.MS.gene57437.t1;Parent=MS.gene57437.t1 |
| chr3.3 | exon | 63112313 | 63112373 | 63112313 | ID=MS.gene57437.t1.exon5;Parent=MS.gene57437.t1 |
| chr3.3 | CDS | 63112313 | 63112373 | 63112313 | ID=cds.MS.gene57437.t1;Parent=MS.gene57437.t1 |
| chr3.3 | exon | 63112094 | 63112256 | 63112094 | ID=MS.gene57437.t1.exon6;Parent=MS.gene57437.t1 |
| chr3.3 | CDS | 63112094 | 63112256 | 63112094 | ID=cds.MS.gene57437.t1;Parent=MS.gene57437.t1 |
| chr3.3 | exon | 63111949 | 63112053 | 63111949 | ID=MS.gene57437.t1.exon7;Parent=MS.gene57437.t1 |
| chr3.3 | CDS | 63111949 | 63112053 | 63111949 | ID=cds.MS.gene57437.t1;Parent=MS.gene57437.t1 |
| chr3.3 | exon | 63111547 | 63111756 | 63111547 | ID=MS.gene57437.t1.exon8;Parent=MS.gene57437.t1 |
| chr3.3 | CDS | 63111547 | 63111756 | 63111547 | ID=cds.MS.gene57437.t1;Parent=MS.gene57437.t1 |
| Gene Sequence |
| Protein sequence |
