Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57509.t1 | XP_013444928.1 | 98.2 | 166 | 3 | 0 | 28 | 193 | 280 | 445 | 3.20E-84 | 321.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57509.t1 | P45432 | 82.5 | 166 | 29 | 0 | 28 | 193 | 276 | 441 | 1.3e-73 | 277.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57509.t1 | A0A072TQ51 | 98.2 | 166 | 3 | 0 | 28 | 193 | 280 | 445 | 2.3e-84 | 321.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051181 | MS.gene57509 | 0.82923 | 5.78E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene57509 | 0.826856 | 2.16E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene57509 | 0.819704 | 1.01E-52 | -1.69E-46 |
| MS.gene056792 | MS.gene57509 | 0.824632 | 7.27E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57509.t1 | MTR_8g432630 | 98.193 | 166 | 3 | 0 | 28 | 193 | 280 | 445 | 4.42e-116 | 337 |
| MS.gene57509.t1 | MTR_8g432630 | 57.377 | 61 | 12 | 2 | 1 | 58 | 107 | 156 | 6.87e-14 | 69.3 |
| MS.gene57509.t1 | MTR_7g076160 | 81.529 | 157 | 29 | 0 | 28 | 184 | 278 | 434 | 8.03e-89 | 268 |
| MS.gene57509.t1 | MTR_4g104080 | 27.007 | 137 | 100 | 0 | 28 | 164 | 235 | 371 | 6.11e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57509.t1 | AT3G61140 | 82.530 | 166 | 29 | 0 | 28 | 193 | 276 | 441 | 2.58e-97 | 289 |
| MS.gene57509.t1 | AT4G24820 | 24.088 | 137 | 104 | 0 | 28 | 164 | 235 | 371 | 3.43e-11 | 61.6 |
| MS.gene57509.t1 | AT4G24820 | 24.088 | 137 | 104 | 0 | 28 | 164 | 235 | 371 | 3.43e-11 | 61.6 |
Find 48 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAACATGACTTCCATATT+AGG | 0.169595 | 8.2:+65380374 | MS.gene57509:CDS |
| GAGGGGTATGAGATGGATTT+GGG | 0.259340 | 8.2:+65376497 | None:intergenic |
| AGAATGAACTTAATGTTTAT+AGG | 0.261063 | 8.2:+65376570 | MS.gene57509:CDS |
| GTTTCCTTGATGCCCTAATA+TGG | 0.271698 | 8.2:-65380387 | None:intergenic |
| TGAGGGGTATGAGATGGATT+TGG | 0.292623 | 8.2:+65376496 | None:intergenic |
| TGGATTTGGGTTGGTGTGAT+GGG | 0.299034 | 8.2:+65376510 | MS.gene57509:CDS |
| TAAACATGACTTCCATATTA+GGG | 0.299578 | 8.2:+65380375 | MS.gene57509:CDS |
| TTTCAAAGGGTTCTAGAAAC+TGG | 0.314327 | 8.2:+65380301 | MS.gene57509:CDS |
| GAATGAACTTAATGTTTATA+GGG | 0.327282 | 8.2:+65376571 | MS.gene57509:CDS |
| ATGGATTTGGGTTGGTGTGA+TGG | 0.340791 | 8.2:+65376509 | MS.gene57509:CDS |
| TTTATCAGTTCCCTTACTTC+GGG | 0.364996 | 8.2:-65379062 | None:intergenic |
| ATGGGAGTGTATACTGGATA+AGG | 0.390701 | 8.2:-65379878 | None:intergenic |
| TAGCCACTATGCTTCCTGTC+TGG | 0.394127 | 8.2:+65379764 | MS.gene57509:intron |
| CCAGTGACATATTTGATTTG+AGG | 0.411924 | 8.2:-65379800 | None:intergenic |
| ATACAAATGGGAGTGTATAC+TGG | 0.417410 | 8.2:-65379884 | None:intergenic |
| TAGAGTTGGTACCCGAAGTA+AGG | 0.420745 | 8.2:+65379051 | MS.gene57509:CDS |
| CTCTAAGAAATTGCGGAAGT+TGG | 0.423840 | 8.2:-65379033 | None:intergenic |
| GCATTCAAGACAACTGTTGT+TGG | 0.425392 | 8.2:+65379933 | MS.gene57509:CDS |
| TTCAAATCAACAGATACAAA+TGG | 0.429576 | 8.2:-65379897 | None:intergenic |
| ATTTATCAGTTCCCTTACTT+CGG | 0.447966 | 8.2:-65379063 | None:intergenic |
| ATCTGTTGATTTGAATATGA+TGG | 0.461634 | 8.2:+65379905 | MS.gene57509:CDS |
| GGATTTGGGTTGGTGTGATG+GGG | 0.475054 | 8.2:+65376511 | MS.gene57509:CDS |
| CTTCCGCAATTTCTTAGAGT+TGG | 0.479444 | 8.2:+65379037 | MS.gene57509:CDS |
| CTTCCTGTCTGGAATACCTT+GGG | 0.489655 | 8.2:+65379775 | MS.gene57509:CDS |
| GTTGGTGTGATGGGGTTGAG+AGG | 0.492699 | 8.2:+65376519 | MS.gene57509:CDS |
| GATTACTGATAATCAAATAC+AGG | 0.501737 | 8.2:+65379980 | MS.gene57509:CDS |
| TCAAATCAACAGATACAAAT+GGG | 0.503406 | 8.2:-65379896 | None:intergenic |
| CCTCAAATCAAATATGTCAC+TGG | 0.505884 | 8.2:+65379800 | MS.gene57509:CDS |
| TGGGAGTGTATACTGGATAA+GGG | 0.513868 | 8.2:-65379877 | None:intergenic |
| AAGGAATGCCACCTTTCAAA+GGG | 0.513987 | 8.2:+65380288 | MS.gene57509:CDS |
| AAAGGAATGCCACCTTTCAA+AGG | 0.518395 | 8.2:+65380287 | MS.gene57509:CDS |
| TGATGGGGTTGAGAGGAAGA+TGG | 0.528170 | 8.2:+65376526 | MS.gene57509:CDS |
| TTCTAGAACCCTTTGAAAGG+TGG | 0.540033 | 8.2:-65380296 | None:intergenic |
| GGTATGAGATGGATTTGGGT+TGG | 0.544573 | 8.2:+65376501 | None:intergenic |
| AAAGGGTTCTAGAAACTGGA+AGG | 0.545587 | 8.2:+65380305 | MS.gene57509:CDS |
| GCTTCCTGTCTGGAATACCT+TGG | 0.554474 | 8.2:+65379774 | MS.gene57509:CDS |
| GTTCCCAAGGTATTCCAGAC+AGG | 0.563223 | 8.2:-65379778 | None:intergenic |
| ACTTCCATATTAGGGCATCA+AGG | 0.575200 | 8.2:+65380383 | MS.gene57509:CDS |
| TATTTGATTTGAGGTTCCCA+AGG | 0.575211 | 8.2:-65379791 | None:intergenic |
| AGTTTCTAGAACCCTTTGAA+AGG | 0.589137 | 8.2:-65380299 | None:intergenic |
| AGATGGAGCAGAAGAAAGAG+AGG | 0.591119 | 8.2:+65376543 | MS.gene57509:CDS |
| AGAGTTGGTACCCGAAGTAA+GGG | 0.593120 | 8.2:+65379052 | MS.gene57509:CDS |
| AAGATTTGATCTCAGCAACA+TGG | 0.606774 | 8.2:-65380350 | None:intergenic |
| ATGCACGACATGCAGATCAA+AGG | 0.613681 | 8.2:+65380269 | MS.gene57509:CDS |
| GTACCAACTCTAAGAAATTG+CGG | 0.634001 | 8.2:-65379040 | None:intergenic |
| ATTCCAGACAGGAAGCATAG+TGG | 0.640692 | 8.2:-65379767 | None:intergenic |
| AAGGGTTCTAGAAACTGGAA+GGG | 0.656638 | 8.2:+65380306 | MS.gene57509:CDS |
| GATCGTAAAGTGTCTCAACA+TGG | 0.668297 | 8.2:-65379839 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAAAAAAAAATATTTG+TGG | + | chr8.2:65379156-65379175 | MS.gene57509:intron | 10.0% |
| !! | AAAAATAAAAGAAATCTTGA+AGG | - | chr8.2:65378248-65378267 | None:intergenic | 15.0% |
| !! | AATAGTTTGAATAAACAAAT+CGG | - | chr8.2:65377668-65377687 | None:intergenic | 15.0% |
| !! | TAAATTAAATATTTCGAAAC+TGG | + | chr8.2:65379578-65379597 | MS.gene57509:intron | 15.0% |
| !! | TAGACTTAATTGATATTTAT+GGG | + | chr8.2:65379515-65379534 | MS.gene57509:intron | 15.0% |
| !! | TTAGACTTAATTGATATTTA+TGG | + | chr8.2:65379514-65379533 | MS.gene57509:intron | 15.0% |
| !!! | TACTTTGTTATTATTGTTTA+GGG | + | chr8.2:65376923-65376942 | MS.gene57509:intron | 15.0% |
| !!! | TTTATTCAAACTATTTTGTA+AGG | + | chr8.2:65377673-65377692 | MS.gene57509:intron | 15.0% |
| !! | AGAATGAACTTAATGTTTAT+AGG | + | chr8.2:65376570-65376589 | MS.gene57509:CDS | 20.0% |
| !! | AGACTTAATTGATATTTATG+GGG | + | chr8.2:65379516-65379535 | MS.gene57509:intron | 20.0% |
| !! | ATAAACACTTGAAATTGTTT+CGG | + | chr8.2:65377054-65377073 | MS.gene57509:intron | 20.0% |
| !! | ATAGTTTGAATAAACAAATC+GGG | - | chr8.2:65377667-65377686 | None:intergenic | 20.0% |
| !! | ATCCAAAAGTTTCATAAATT+AGG | - | chr8.2:65380210-65380229 | None:intergenic | 20.0% |
| !! | CATAATTTAATTAAGGTAGA+TGG | - | chr8.2:65378198-65378217 | None:intergenic | 20.0% |
| !! | CATCTACCTTAATTAAATTA+TGG | + | chr8.2:65378196-65378215 | MS.gene57509:intron | 20.0% |
| !! | GAATGAACTTAATGTTTATA+GGG | + | chr8.2:65376571-65376590 | MS.gene57509:CDS | 20.0% |
| !! | GATCTATGAAATATTCTATT+TGG | + | chr8.2:65378688-65378707 | MS.gene57509:intron | 20.0% |
| !! | TAATTGTCATGAAAATACAA+TGG | - | chr8.2:65378931-65378950 | None:intergenic | 20.0% |
| !! | TACATTTGATTATGGTAATT+AGG | + | chr8.2:65379197-65379216 | MS.gene57509:intron | 20.0% |
| !! | TGAAAATAGTTTATAACCTA+TGG | + | chr8.2:65376767-65376786 | MS.gene57509:intron | 20.0% |
| !!! | AACAGTCAAGTTTATTTTTT+GGG | + | chr8.2:65377326-65377345 | MS.gene57509:intron | 20.0% |
| !!! | AATTAAGTTGTATCCAAATA+GGG | + | chr8.2:65377258-65377277 | MS.gene57509:intron | 20.0% |
| !!! | AATTTCTCTTTTCAACATTT+TGG | + | chr8.2:65376595-65376614 | MS.gene57509:intron | 20.0% |
| !!! | AATTTGGAATCATCTTATAT+TGG | + | chr8.2:65378055-65378074 | MS.gene57509:intron | 20.0% |
| !!! | ATTTCTCTTTTCAACATTTT+GGG | + | chr8.2:65376596-65376615 | MS.gene57509:intron | 20.0% |
| !!! | GTACTTTGTTATTATTGTTT+AGG | + | chr8.2:65376922-65376941 | MS.gene57509:intron | 20.0% |
| !!! | TAATTAAGTTGTATCCAAAT+AGG | + | chr8.2:65377257-65377276 | MS.gene57509:intron | 20.0% |
| !!! | TATAAATTGTTAATTTGCTG+AGG | + | chr8.2:65377527-65377546 | MS.gene57509:intron | 20.0% |
| !!! | TGTATATAATACACTAGTTT+AGG | + | chr8.2:65379236-65379255 | MS.gene57509:intron | 20.0% |
| !!! | TGTTTAACTTGTTTTAGTAT+AGG | + | chr8.2:65377453-65377472 | MS.gene57509:intron | 20.0% |
| !!! | TTCAATTTTTGTATTGCTAT+TGG | + | chr8.2:65377705-65377724 | MS.gene57509:intron | 20.0% |
| !!! | TTGATTGAATTTTGTTGAAT+CGG | + | chr8.2:65379604-65379623 | MS.gene57509:intron | 20.0% |
| !!! | TTTTGTTTTGTTAATTCTTC+TGG | + | chr8.2:65377733-65377752 | MS.gene57509:intron | 20.0% |
| ! | ACCTATTAACTTCATTTCTT+TGG | + | chr8.2:65378756-65378775 | MS.gene57509:intron | 25.0% |
| ! | CAATTTATAGTAACTCAAAC+CGG | - | chr8.2:65380007-65380026 | None:intergenic | 25.0% |
| ! | CCATTAAGTATCAAAAATCA+TGG | - | chr8.2:65377869-65377888 | None:intergenic | 25.0% |
| ! | CTGTATAGTACATTTGATTA+TGG | + | chr8.2:65379189-65379208 | MS.gene57509:intron | 25.0% |
| ! | GATTACTGATAATCAAATAC+AGG | + | chr8.2:65379980-65379999 | MS.gene57509:CDS | 25.0% |
| ! | TAAACATGACTTCCATATTA+GGG | + | chr8.2:65380375-65380394 | MS.gene57509:CDS | 25.0% |
| ! | TATCAACTGTTAACTAGTAT+AGG | + | chr8.2:65377495-65377514 | MS.gene57509:intron | 25.0% |
| ! | TCAAACTACTGGATTATTAA+GGG | + | chr8.2:65378655-65378674 | MS.gene57509:intron | 25.0% |
| ! | TCAAATCAACAGATACAAAT+GGG | - | chr8.2:65379899-65379918 | None:intergenic | 25.0% |
| ! | TCGATTAAACTTTGTTAGTT+TGG | + | chr8.2:65377351-65377370 | MS.gene57509:intron | 25.0% |
| ! | TCTGTTTGTATTGAATTGAA+TGG | + | chr8.2:65377761-65377780 | MS.gene57509:intron | 25.0% |
| ! | TTAAACATGACTTCCATATT+AGG | + | chr8.2:65380374-65380393 | MS.gene57509:CDS | 25.0% |
| ! | TTAATTAAGGTAGATGGAAA+AGG | - | chr8.2:65378192-65378211 | None:intergenic | 25.0% |
| ! | TTCAAATCAACAGATACAAA+TGG | - | chr8.2:65379900-65379919 | None:intergenic | 25.0% |
| ! | TTTCAACATGAAATGAATCA+GGG | + | chr8.2:65377002-65377021 | MS.gene57509:intron | 25.0% |
| !! | AATATTCTATTTGGAGTTTG+AGG | + | chr8.2:65378697-65378716 | MS.gene57509:intron | 25.0% |
| !! | AATTTTGTTGAATCGGTAAT+TGG | + | chr8.2:65379611-65379630 | MS.gene57509:intron | 25.0% |
| !! | ATTAAAGAAAGCATACGAAT+GGG | + | chr8.2:65378281-65378300 | MS.gene57509:intron | 25.0% |
| !! | ATTTCTTTTCTTACTTAACG+TGG | + | chr8.2:65379284-65379303 | MS.gene57509:intron | 25.0% |
| !! | CCATGATTTTTGATACTTAA+TGG | + | chr8.2:65377866-65377885 | MS.gene57509:intron | 25.0% |
| !! | CTCCTAATTTATGAAACTTT+TGG | + | chr8.2:65380205-65380224 | MS.gene57509:intron | 25.0% |
| !! | GAAATGAATTAGAGTATCAT+TGG | + | chr8.2:65376709-65376728 | MS.gene57509:intron | 25.0% |
| !! | GTCTCTTTTACTATAAAAGA+AGG | + | chr8.2:65380155-65380174 | MS.gene57509:intron | 25.0% |
| !! | TAATTTTCTATAACATAGCC+TGG | - | chr8.2:65380052-65380071 | None:intergenic | 25.0% |
| !! | TATTTTCATAAGCAATCTAG+TGG | - | chr8.2:65376755-65376774 | None:intergenic | 25.0% |
| !! | TGATAAATGACTTTTACTCA+AGG | + | chr8.2:65379078-65379097 | MS.gene57509:CDS | 25.0% |
| !! | TTTTCAACATGAAATGAATC+AGG | + | chr8.2:65377001-65377020 | MS.gene57509:intron | 25.0% |
| !!! | ATCTGTTGATTTGAATATGA+TGG | + | chr8.2:65379905-65379924 | MS.gene57509:CDS | 25.0% |
| !!! | ATTTTTGTATTGCTATTGGA+TGG | + | chr8.2:65377709-65377728 | MS.gene57509:intron | 25.0% |
| !!! | GAACAGTCAAGTTTATTTTT+TGG | + | chr8.2:65377325-65377344 | MS.gene57509:intron | 25.0% |
| !!! | GGTTTTTGTTGTTATTGTTT+AGG | + | chr8.2:65376617-65376636 | MS.gene57509:intron | 25.0% |
| !!! | GTCTTCATGATTTTATTTCT+TGG | + | chr8.2:65378988-65379007 | MS.gene57509:intron | 25.0% |
| AAAAATCATGGAGAACGTAA+TGG | - | chr8.2:65377857-65377876 | None:intergenic | 30.0% | |
| AGCTGCAATTACTTCATTAT+AGG | - | chr8.2:65378840-65378859 | None:intergenic | 30.0% | |
| ATTTATCAGTTCCCTTACTT+CGG | - | chr8.2:65379066-65379085 | None:intergenic | 30.0% | |
| CAGCGACCATAATTTAATTA+AGG | - | chr8.2:65378205-65378224 | None:intergenic | 30.0% | |
| CGTAGCTTGGAAATTATTAT+CGG | - | chr8.2:65378515-65378534 | None:intergenic | 30.0% | |
| CTCAAACTACTGGATTATTA+AGG | + | chr8.2:65378654-65378673 | MS.gene57509:intron | 30.0% | |
| GAATCGGTAATTGGTATTAA+TGG | + | chr8.2:65379620-65379639 | MS.gene57509:intron | 30.0% | |
| GCCAAAGAAATGAAGTTAAT+AGG | - | chr8.2:65378760-65378779 | None:intergenic | 30.0% | |
| GTAGCTTGGAAATTATTATC+GGG | - | chr8.2:65378514-65378533 | None:intergenic | 30.0% | |
| GTGAATTATATGCTTTGATG+TGG | - | chr8.2:65378393-65378412 | None:intergenic | 30.0% | |
| TATCTTTCGTCGTGTATAAT+AGG | + | chr8.2:65376811-65376830 | MS.gene57509:intron | 30.0% | |
| TGAAATTGAGAGTCTTAGTT+TGG | + | chr8.2:65379365-65379384 | MS.gene57509:intron | 30.0% | |
| TGACTGGAATTGAAAAGAAT+TGG | + | chr8.2:65379444-65379463 | MS.gene57509:intron | 30.0% | |
| TTAAAAGTTATGTTCGTACC+CGG | + | chr8.2:65378357-65378376 | MS.gene57509:intron | 30.0% | |
| TTTACTGAGCACAAATCAAA+AGG | - | chr8.2:65379562-65379581 | None:intergenic | 30.0% | |
| ! | ATTTCAAGTGTTTATGCTAG+TGG | - | chr8.2:65377049-65377068 | None:intergenic | 30.0% |
| ! | ATTTTGGATCCTTCCAAATA+AGG | - | chr8.2:65377644-65377663 | None:intergenic | 30.0% |
| ! | GAATAAACAAATCGGGATTT+TGG | - | chr8.2:65377660-65377679 | None:intergenic | 30.0% |
| ! | GAATTAGAGTATCATTGGAT+TGG | + | chr8.2:65376714-65376733 | MS.gene57509:intron | 30.0% |
| ! | GATTAAAGAAAGCATACGAA+TGG | + | chr8.2:65378280-65378299 | MS.gene57509:intron | 30.0% |
| ! | TCTTATATTGGTTACTGTGT+TGG | + | chr8.2:65378067-65378086 | MS.gene57509:intron | 30.0% |
| ! | TTCTTGTTTAACTGAGTCAA+AGG | + | chr8.2:65379342-65379361 | MS.gene57509:intron | 30.0% |
| ! | TTTTGGATCCTTCCAAATAA+GGG | - | chr8.2:65377643-65377662 | None:intergenic | 30.0% |
| !! | ACGTCAGATTATTTTTCCAT+AGG | - | chr8.2:65376786-65376805 | None:intergenic | 30.0% |
| !!! | TCATTGGATTGGCTTATTTT+AGG | + | chr8.2:65376725-65376744 | MS.gene57509:intron | 30.0% |
| !!! | TTTGTTTTGCCGCTTATAAA+GGG | + | chr8.2:65376888-65376907 | MS.gene57509:intron | 30.0% |
| !!! | TTTTGTTTTGCCGCTTATAA+AGG | + | chr8.2:65376887-65376906 | MS.gene57509:intron | 30.0% |
| AAGAAGGAAAAAAGCCTGTT+TGG | + | chr8.2:65380171-65380190 | MS.gene57509:intron | 35.0% | |
| AAGATTTGATCTCAGCAACA+TGG | - | chr8.2:65380353-65380372 | None:intergenic | 35.0% | |
| AATTGCATGCCGAAGTTATT+TGG | - | chr8.2:65380121-65380140 | None:intergenic | 35.0% | |
| ACTATTCTCATGGTCTACTA+GGG | + | chr8.2:65378327-65378346 | MS.gene57509:intron | 35.0% | |
| ACTTAATGGCAGTTAGTAGT+GGG | + | chr8.2:65377880-65377899 | MS.gene57509:intron | 35.0% | |
| AGAAGGAAAAAAGCCTGTTT+GGG | + | chr8.2:65380172-65380191 | MS.gene57509:intron | 35.0% | |
| AGTCTGAGCAAATTAACCAA+CGG | - | chr8.2:65377425-65377444 | None:intergenic | 35.0% | |
| CAACGCTTGTGTTTAGATTA+AGG | - | chr8.2:65377284-65377303 | None:intergenic | 35.0% | |
| CCTCAAATCAAATATGTCAC+TGG | + | chr8.2:65379800-65379819 | MS.gene57509:CDS | 35.0% | |
| CTGATAATCAAATACAGGTC+CGG | + | chr8.2:65379985-65380004 | MS.gene57509:intron | 35.0% | |
| GAAATGAATCAGGGTATGTT+TGG | + | chr8.2:65377011-65377030 | MS.gene57509:intron | 35.0% | |
| GGAAATTATTATCGGGTCAA+GGG | - | chr8.2:65378507-65378526 | None:intergenic | 35.0% | |
| GTTTAGATTAAGGCCCTATT+TGG | - | chr8.2:65377274-65377293 | None:intergenic | 35.0% | |
| TAAAAGTTATGTTCGTACCC+GGG | + | chr8.2:65378358-65378377 | MS.gene57509:intron | 35.0% | |
| TAATGACTACTCAGAGACAT+TGG | + | chr8.2:65378958-65378977 | MS.gene57509:intron | 35.0% | |
| TACTATTCTCATGGTCTACT+AGG | + | chr8.2:65378326-65378345 | MS.gene57509:intron | 35.0% | |
| TACTTAATGGCAGTTAGTAG+TGG | + | chr8.2:65377879-65377898 | MS.gene57509:intron | 35.0% | |
| TAGCTCGAAAGAAATAGAGT+TGG | + | chr8.2:65377912-65377931 | MS.gene57509:intron | 35.0% | |
| TGCTTAAGTACACCCTTATT+TGG | + | chr8.2:65377628-65377647 | MS.gene57509:intron | 35.0% | |
| TGCTTGTCTGTAAAAATGAC+TGG | + | chr8.2:65379428-65379447 | MS.gene57509:intron | 35.0% | |
| TGGAAATTATTATCGGGTCA+AGG | - | chr8.2:65378508-65378527 | None:intergenic | 35.0% | |
| TGTCTCAAGCTATGTTAACA+AGG | + | chr8.2:65378463-65378482 | MS.gene57509:intron | 35.0% | |
| TGTTGTGTTAAATAGGTGTG+TGG | + | chr8.2:65377935-65377954 | MS.gene57509:intron | 35.0% | |
| TTAGATTCTGCTCAAACTAC+TGG | + | chr8.2:65378644-65378663 | MS.gene57509:intron | 35.0% | |
| TTGTGCTTACAAATTCAACC+AGG | + | chr8.2:65380031-65380050 | MS.gene57509:intron | 35.0% | |
| TTTATCAGTTCCCTTACTTC+GGG | - | chr8.2:65379065-65379084 | None:intergenic | 35.0% | |
| TTTGTGCACTTGCAATGATA+GGG | + | chr8.2:65378885-65378904 | MS.gene57509:intron | 35.0% | |
| ! | AATTCTAGTCAGCATTGAGA+TGG | + | chr8.2:65378427-65378446 | MS.gene57509:intron | 35.0% |
| ! | AATTGAGAGTCTTAGTTTGG+TGG | + | chr8.2:65379368-65379387 | MS.gene57509:intron | 35.0% |
| ! | ACACAAGCGTTGTTTATGAT+AGG | + | chr8.2:65377292-65377311 | MS.gene57509:intron | 35.0% |
| ! | AGCAGCAAGCTTATACTTTT+TGG | - | chr8.2:65378567-65378586 | None:intergenic | 35.0% |
| ! | AGTTTGGATTTGCCACTTAT+CGG | + | chr8.2:65377367-65377386 | MS.gene57509:intron | 35.0% |
| ! | ATACAAATGGGAGTGTATAC+TGG | - | chr8.2:65379887-65379906 | None:intergenic | 35.0% |
| ! | ATTCTAGTCAGCATTGAGAT+GGG | + | chr8.2:65378428-65378447 | MS.gene57509:intron | 35.0% |
| ! | CGAATGGGATACAATGATTT+TGG | + | chr8.2:65378296-65378315 | MS.gene57509:intron | 35.0% |
| ! | GACTTTTACTCAAGGTAAGT+GGG | + | chr8.2:65379086-65379105 | MS.gene57509:intron | 35.0% |
| ! | GGAGACTTTTACTATTCTCA+TGG | + | chr8.2:65378317-65378336 | MS.gene57509:intron | 35.0% |
| ! | GTACCAACTCTAAGAAATTG+CGG | - | chr8.2:65379043-65379062 | None:intergenic | 35.0% |
| ! | TAAGTACACCCTTATTTGGA+AGG | + | chr8.2:65377632-65377651 | MS.gene57509:intron | 35.0% |
| ! | TGACTTTTACTCAAGGTAAG+TGG | + | chr8.2:65379085-65379104 | MS.gene57509:intron | 35.0% |
| !! | AGTTTCTAGAACCCTTTGAA+AGG | - | chr8.2:65380302-65380321 | None:intergenic | 35.0% |
| !! | CCAGTGACATATTTGATTTG+AGG | - | chr8.2:65379803-65379822 | None:intergenic | 35.0% |
| !! | GAGTTGGTGTTGTGTTAAAT+AGG | + | chr8.2:65377928-65377947 | MS.gene57509:intron | 35.0% |
| !! | TATTTGATTTGAGGTTCCCA+AGG | - | chr8.2:65379794-65379813 | None:intergenic | 35.0% |
| !! | TTTCAAAGGGTTCTAGAAAC+TGG | + | chr8.2:65380301-65380320 | MS.gene57509:CDS | 35.0% |
| AAAGGAATGCCACCTTTCAA+AGG | + | chr8.2:65380287-65380306 | MS.gene57509:CDS | 40.0% | |
| AAGGAATGCCACCTTTCAAA+GGG | + | chr8.2:65380288-65380307 | MS.gene57509:CDS | 40.0% | |
| CAAGATGTTGCAACATATGG+AGG | + | chr8.2:65378860-65378879 | MS.gene57509:intron | 40.0% | |
| CAATGATAGGGCAGAGTTAA+AGG | + | chr8.2:65378897-65378916 | MS.gene57509:intron | 40.0% | |
| CACGGCATTACTATTTGACA+TGG | + | chr8.2:65378130-65378149 | MS.gene57509:intron | 40.0% | |
| CTATTCTCATGGTCTACTAG+GGG | + | chr8.2:65378328-65378347 | MS.gene57509:intron | 40.0% | |
| CTTCCGCAATTTCTTAGAGT+TGG | + | chr8.2:65379037-65379056 | MS.gene57509:CDS | 40.0% | |
| CTTTGTGCACTTGCAATGAT+AGG | + | chr8.2:65378884-65378903 | MS.gene57509:intron | 40.0% | |
| GAATCAGGGTATGTTTGGAT+TGG | + | chr8.2:65377016-65377035 | MS.gene57509:intron | 40.0% | |
| GCATTCAAGACAACTGTTGT+TGG | + | chr8.2:65379933-65379952 | MS.gene57509:CDS | 40.0% | |
| GCTCAAGATGTTGCAACATA+TGG | + | chr8.2:65378857-65378876 | MS.gene57509:intron | 40.0% | |
| GTGTACTTAAGCACTCTAGA+AGG | - | chr8.2:65377621-65377640 | None:intergenic | 40.0% | |
| GTTAGCAATTAAGTGCTCTC+AGG | + | chr8.2:65378027-65378046 | MS.gene57509:intron | 40.0% | |
| GTTTCCTTGATGCCCTAATA+TGG | - | chr8.2:65380390-65380409 | None:intergenic | 40.0% | |
| TAGTAATGCCGTGACAGTAT+AGG | - | chr8.2:65378123-65378142 | None:intergenic | 40.0% | |
| TGCAGTAAATAGCAGAAACG+TGG | - | chr8.2:65378785-65378804 | None:intergenic | 40.0% | |
| TGCGCACATCCAAATAACTT+CGG | + | chr8.2:65380109-65380128 | MS.gene57509:intron | 40.0% | |
| TTGATGTGGTGCAATAATCC+CGG | - | chr8.2:65378379-65378398 | None:intergenic | 40.0% | |
| ! | ACTTCCATATTAGGGCATCA+AGG | + | chr8.2:65380383-65380402 | MS.gene57509:CDS | 40.0% |
| ! | ATGGGAGTGTATACTGGATA+AGG | - | chr8.2:65379881-65379900 | None:intergenic | 40.0% |
| ! | CTCTAAGAAATTGCGGAAGT+TGG | - | chr8.2:65379036-65379055 | None:intergenic | 40.0% |
| ! | GATCGTAAAGTGTCTCAACA+TGG | - | chr8.2:65379842-65379861 | None:intergenic | 40.0% |
| ! | GTTTGGATTTGCCACTTATC+GGG | + | chr8.2:65377368-65377387 | MS.gene57509:intron | 40.0% |
| ! | TAGTTTGGTGGAATTGCACT+GGG | + | chr8.2:65379380-65379399 | MS.gene57509:intron | 40.0% |
| ! | TGAAACTTTTGGATCTGTGC+AGG | + | chr8.2:65380216-65380235 | MS.gene57509:intron | 40.0% |
| ! | TGGGAGTGTATACTGGATAA+GGG | - | chr8.2:65379880-65379899 | None:intergenic | 40.0% |
| ! | TTACTGCAGTTTCTAGAAGC+AGG | + | chr8.2:65378797-65378816 | MS.gene57509:intron | 40.0% |
| ! | TTAGTTTGGTGGAATTGCAC+TGG | + | chr8.2:65379379-65379398 | MS.gene57509:intron | 40.0% |
| ! | TTTGGATTTGCCACTTATCG+GGG | + | chr8.2:65377369-65377388 | MS.gene57509:intron | 40.0% |
| !! | AAAGGGTTCTAGAAACTGGA+AGG | + | chr8.2:65380305-65380324 | MS.gene57509:CDS | 40.0% |
| !! | AAGGGTTCTAGAAACTGGAA+GGG | + | chr8.2:65380306-65380325 | MS.gene57509:CDS | 40.0% |
| !! | TTCTAGAACCCTTTGAAAGG+TGG | - | chr8.2:65380299-65380318 | None:intergenic | 40.0% |
| !! | TTTTGCCGCTTATAAAGGGA+GGG | + | chr8.2:65376892-65376911 | MS.gene57509:intron | 40.0% |
| AACCTACAGCACAACTCACA+AGG | - | chr8.2:65377806-65377825 | None:intergenic | 45.0% | |
| AACCTTGTGAGTTGTGCTGT+AGG | + | chr8.2:65377801-65377820 | MS.gene57509:intron | 45.0% | |
| ACTGGGTATTTCAGCATGCA+TGG | + | chr8.2:65379397-65379416 | MS.gene57509:intron | 45.0% | |
| AGATGGAGCAGAAGAAAGAG+AGG | + | chr8.2:65376543-65376562 | MS.gene57509:CDS | 45.0% | |
| ATAGGTGTGTGGCTTGAGAA+AGG | + | chr8.2:65377946-65377965 | MS.gene57509:intron | 45.0% | |
| ATGCACGACATGCAGATCAA+AGG | + | chr8.2:65380269-65380288 | MS.gene57509:CDS | 45.0% | |
| CCATGTTCTGTGAACTTCTG+AGG | + | chr8.2:65377991-65378010 | MS.gene57509:intron | 45.0% | |
| CCTCAGAAGTTCACAGAACA+TGG | - | chr8.2:65377994-65378013 | None:intergenic | 45.0% | |
| CCTTTCCCTCCCTTTATAAG+CGG | - | chr8.2:65376900-65376919 | None:intergenic | 45.0% | |
| CGCTTATAAAGGGAGGGAAA+GGG | + | chr8.2:65376898-65376917 | MS.gene57509:intron | 45.0% | |
| CTATGTTAACAAGGCAGAGC+AGG | + | chr8.2:65378472-65378491 | MS.gene57509:intron | 45.0% | |
| GCTATCCAAGACAGCGTATA+TGG | + | chr8.2:65377145-65377164 | MS.gene57509:intron | 45.0% | |
| GGAAAAGGTAAAGCTCGACT+GGG | - | chr8.2:65378177-65378196 | None:intergenic | 45.0% | |
| TAGGTGTGTGGCTTGAGAAA+GGG | + | chr8.2:65377947-65377966 | MS.gene57509:intron | 45.0% | |
| TATGCCAGCCTATACTGTCA+CGG | + | chr8.2:65378112-65378131 | MS.gene57509:intron | 45.0% | |
| TGATGTGGTGCAATAATCCC+GGG | - | chr8.2:65378378-65378397 | None:intergenic | 45.0% | |
| TGGAAAAGGTAAAGCTCGAC+TGG | - | chr8.2:65378178-65378197 | None:intergenic | 45.0% | |
| TGTTGCCATATACGCTGTCT+TGG | - | chr8.2:65377153-65377172 | None:intergenic | 45.0% | |
| ! | ATTCCAGACAGGAAGCATAG+TGG | - | chr8.2:65379770-65379789 | None:intergenic | 45.0% |
| ! | CTTCCTGTCTGGAATACCTT+GGG | + | chr8.2:65379775-65379794 | MS.gene57509:CDS | 45.0% |
| ! | TGCAGGATTGGCATATCTAG+AGG | + | chr8.2:65378541-65378560 | MS.gene57509:intron | 45.0% |
| ! | TTGGATTTGCCACTTATCGG+GGG | + | chr8.2:65377370-65377389 | MS.gene57509:intron | 45.0% |
| ! | TTGGTTACTGTGTTGGTGCT+CGG | + | chr8.2:65378074-65378093 | MS.gene57509:intron | 45.0% |
| !! | AGAGTTGGTACCCGAAGTAA+GGG | + | chr8.2:65379052-65379071 | MS.gene57509:CDS | 45.0% |
| !! | ATGGATTTGGGTTGGTGTGA+TGG | + | chr8.2:65376509-65376528 | MS.gene57509:CDS | 45.0% |
| !! | GTATAAGCTTGCTGCTCGAA+AGG | + | chr8.2:65378571-65378590 | MS.gene57509:intron | 45.0% |
| !! | GTTTTGCCGCTTATAAAGGG+AGG | + | chr8.2:65376891-65376910 | MS.gene57509:intron | 45.0% |
| !! | TAGAGTTGGTACCCGAAGTA+AGG | + | chr8.2:65379051-65379070 | MS.gene57509:CDS | 45.0% |
| !! | TGGATTTGGGTTGGTGTGAT+GGG | + | chr8.2:65376510-65376529 | MS.gene57509:CDS | 45.0% |
| AATGCCGTGACAGTATAGGC+TGG | - | chr8.2:65378119-65378138 | None:intergenic | 50.0% | |
| CCGCTTATAAAGGGAGGGAA+AGG | + | chr8.2:65376897-65376916 | MS.gene57509:intron | 50.0% | |
| GAGCTGTTCAAGTCCCAAAC+AGG | - | chr8.2:65380188-65380207 | None:intergenic | 50.0% | |
| GCAATTAAGTGCTCTCAGGC+TGG | + | chr8.2:65378031-65378050 | MS.gene57509:intron | 50.0% | |
| GTGCTCTCAGGCTGGAAATT+TGG | + | chr8.2:65378039-65378058 | MS.gene57509:intron | 50.0% | |
| TAGCCACTATGCTTCCTGTC+TGG | + | chr8.2:65379764-65379783 | MS.gene57509:intron | 50.0% | |
| TGATGGGGTTGAGAGGAAGA+TGG | + | chr8.2:65376526-65376545 | MS.gene57509:CDS | 50.0% | |
| ! | GCTTCCTGTCTGGAATACCT+TGG | + | chr8.2:65379774-65379793 | MS.gene57509:CDS | 50.0% |
| ! | GTTCCCAAGGTATTCCAGAC+AGG | - | chr8.2:65379781-65379800 | None:intergenic | 50.0% |
| ! | TGGATTTGCCACTTATCGGG+GGG | + | chr8.2:65377371-65377390 | MS.gene57509:intron | 50.0% |
| !! | AAGCTTGCTGCTCGAAAGGT+TGG | + | chr8.2:65378575-65378594 | MS.gene57509:intron | 50.0% |
| !! | GGATTTGGGTTGGTGTGATG+GGG | + | chr8.2:65376511-65376530 | MS.gene57509:CDS | 50.0% |
| CTAGAAGCAGGCGCAGAACT+GGG | + | chr8.2:65378809-65378828 | MS.gene57509:intron | 55.0% | |
| GCTACGATGTGCTGCAGGAT+TGG | + | chr8.2:65378529-65378548 | MS.gene57509:intron | 55.0% | |
| TCCAAGCTACGATGTGCTGC+AGG | + | chr8.2:65378524-65378543 | MS.gene57509:intron | 55.0% | |
| TCCTGCAGCACATCGTAGCT+TGG | - | chr8.2:65378528-65378547 | None:intergenic | 55.0% | |
| TCTAGAAGCAGGCGCAGAAC+TGG | + | chr8.2:65378808-65378827 | MS.gene57509:intron | 55.0% | |
| ! | ATTTGCCACTTATCGGGGGG+TGG | + | chr8.2:65377374-65377393 | MS.gene57509:intron | 55.0% |
| ! | GTTGGTGTGATGGGGTTGAG+AGG | + | chr8.2:65376519-65376538 | MS.gene57509:CDS | 55.0% |
| ! | TTTGCCACTTATCGGGGGGT+GGG | + | chr8.2:65377375-65377394 | MS.gene57509:intron | 55.0% |
| ! | CGGGGCACTTTGTAGACCGT+TGG | + | chr8.2:65377406-65377425 | MS.gene57509:intron | 60.0% |
| ! | TTGCCACTTATCGGGGGGTG+GGG | + | chr8.2:65377376-65377395 | MS.gene57509:intron | 60.0% |
| ACTTATCGGGGGGTGGGGGT+GGG | + | chr8.2:65377381-65377400 | MS.gene57509:intron | 65.0% | |
| ! | TGCCACTTATCGGGGGGTGG+GGG | + | chr8.2:65377377-65377396 | MS.gene57509:intron | 65.0% |
| CACCCCCACCCCCCGATAAG+TGG | - | chr8.2:65377382-65377401 | None:intergenic | 70.0% | |
| CACTTATCGGGGGGTGGGGG+TGG | + | chr8.2:65377380-65377399 | MS.gene57509:intron | 70.0% | |
| CTTATCGGGGGGTGGGGGTG+GGG | + | chr8.2:65377382-65377401 | MS.gene57509:intron | 70.0% | |
| TTATCGGGGGGTGGGGGTGG+GGG | + | chr8.2:65377383-65377402 | MS.gene57509:intron | 70.0% | |
| ! | TCGGGGGGTGGGGGTGGGGG+CGG | + | chr8.2:65377386-65377405 | MS.gene57509:intron | 85.0% |
| ! | CGGGGGGTGGGGGTGGGGGC+GGG | + | chr8.2:65377387-65377406 | MS.gene57509:intron | 90.0% |
| ! | GGGGGGTGGGGGTGGGGGCG+GGG | + | chr8.2:65377388-65377407 | MS.gene57509:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 65376509 | 65380414 | 65376509 | ID=MS.gene57509 |
| chr8.2 | mRNA | 65376509 | 65380414 | 65376509 | ID=MS.gene57509.t1;Parent=MS.gene57509 |
| chr8.2 | exon | 65376509 | 65376592 | 65376509 | ID=MS.gene57509.t1.exon1;Parent=MS.gene57509.t1 |
| chr8.2 | CDS | 65376509 | 65376592 | 65376509 | ID=cds.MS.gene57509.t1;Parent=MS.gene57509.t1 |
| chr8.2 | exon | 65379014 | 65379099 | 65379014 | ID=MS.gene57509.t1.exon2;Parent=MS.gene57509.t1 |
| chr8.2 | CDS | 65379014 | 65379099 | 65379014 | ID=cds.MS.gene57509.t1;Parent=MS.gene57509.t1 |
| chr8.2 | exon | 65379767 | 65380001 | 65379767 | ID=MS.gene57509.t1.exon3;Parent=MS.gene57509.t1 |
| chr8.2 | CDS | 65379767 | 65380001 | 65379767 | ID=cds.MS.gene57509.t1;Parent=MS.gene57509.t1 |
| chr8.2 | exon | 65380238 | 65380414 | 65380238 | ID=MS.gene57509.t1.exon4;Parent=MS.gene57509.t1 |
| chr8.2 | CDS | 65380238 | 65380414 | 65380238 | ID=cds.MS.gene57509.t1;Parent=MS.gene57509.t1 |
| Gene Sequence |
| Protein sequence |
