Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57681.t1 | XP_013443654.1 | 97.6 | 288 | 4 | 2 | 1 | 286 | 1 | 287 | 1.70E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57681.t1 | Q9LEX0 | 60.0 | 290 | 110 | 3 | 1 | 287 | 1 | 287 | 2.8e-101 | 369.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57681.t1 | A0A072TJF7 | 97.6 | 288 | 4 | 2 | 1 | 286 | 1 | 287 | 1.2e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053401 | MS.gene57681 | 0.819276 | 1.26E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene57681 | 0.803328 | 3.67E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene57681 | 0.801765 | 7.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57681.t1 | MTR_0002s0020 | 97.232 | 289 | 5 | 2 | 1 | 287 | 1 | 288 | 0.0 | 579 |
| MS.gene57681.t1 | MTR_4g102770 | 62.403 | 258 | 95 | 1 | 23 | 280 | 19 | 274 | 4.69e-124 | 355 |
| MS.gene57681.t1 | MTR_1g101390 | 62.745 | 255 | 92 | 1 | 23 | 277 | 28 | 279 | 1.24e-121 | 350 |
| MS.gene57681.t1 | MTR_0113s0040 | 58.984 | 256 | 102 | 1 | 23 | 278 | 22 | 274 | 1.15e-118 | 342 |
| MS.gene57681.t1 | MTR_5g010800 | 58.712 | 264 | 103 | 3 | 23 | 285 | 17 | 275 | 2.73e-116 | 336 |
| MS.gene57681.t1 | MTR_7g103380 | 54.296 | 291 | 115 | 3 | 1 | 280 | 1 | 284 | 4.93e-109 | 318 |
| MS.gene57681.t1 | MTR_7g112560 | 25.843 | 267 | 163 | 5 | 26 | 275 | 4 | 252 | 2.37e-32 | 120 |
| MS.gene57681.t1 | MTR_4g023570 | 27.381 | 252 | 158 | 5 | 26 | 275 | 4 | 232 | 3.04e-29 | 111 |
| MS.gene57681.t1 | MTR_7g112550 | 25.448 | 279 | 173 | 6 | 26 | 277 | 10 | 280 | 8.22e-23 | 95.5 |
| MS.gene57681.t1 | MTR_1g079140 | 36.806 | 144 | 89 | 2 | 25 | 167 | 15 | 157 | 1.79e-22 | 95.1 |
| MS.gene57681.t1 | MTR_1g083580 | 30.303 | 198 | 118 | 5 | 26 | 219 | 11 | 192 | 1.87e-21 | 91.7 |
| MS.gene57681.t1 | MTR_1g079260 | 28.708 | 209 | 131 | 3 | 25 | 232 | 6 | 197 | 2.77e-21 | 91.3 |
| MS.gene57681.t1 | MTR_1g079180 | 30.909 | 165 | 109 | 3 | 25 | 186 | 6 | 168 | 6.66e-21 | 90.1 |
| MS.gene57681.t1 | MTR_1g079380 | 30.332 | 211 | 125 | 4 | 23 | 230 | 4 | 195 | 4.82e-20 | 88.2 |
| MS.gene57681.t1 | MTR_1g079460 | 32.298 | 161 | 104 | 3 | 25 | 182 | 6 | 164 | 7.93e-20 | 87.0 |
| MS.gene57681.t1 | MTR_1g079200 | 25.287 | 261 | 178 | 7 | 25 | 275 | 6 | 259 | 4.03e-19 | 85.1 |
| MS.gene57681.t1 | MTR_1g079230 | 31.544 | 149 | 98 | 1 | 22 | 170 | 3 | 147 | 4.89e-19 | 85.1 |
| MS.gene57681.t1 | MTR_1g100597 | 25.000 | 276 | 172 | 9 | 25 | 277 | 6 | 269 | 6.91e-19 | 84.7 |
| MS.gene57681.t1 | MTR_1g079370 | 29.762 | 168 | 110 | 3 | 22 | 186 | 3 | 165 | 7.95e-19 | 84.3 |
| MS.gene57681.t1 | MTR_1g100613 | 34.848 | 132 | 80 | 2 | 40 | 170 | 6 | 132 | 1.54e-18 | 83.2 |
| MS.gene57681.t1 | MTR_1g079850 | 30.435 | 161 | 108 | 3 | 25 | 182 | 6 | 165 | 9.61e-18 | 81.6 |
| MS.gene57681.t1 | MTR_3g452600 | 24.549 | 277 | 165 | 8 | 23 | 277 | 10 | 264 | 2.47e-16 | 77.4 |
| MS.gene57681.t1 | MTR_1g079410 | 30.822 | 146 | 99 | 2 | 26 | 170 | 11 | 155 | 1.52e-15 | 75.1 |
| MS.gene57681.t1 | MTR_1g079400 | 29.452 | 146 | 101 | 2 | 26 | 170 | 15 | 159 | 1.25e-13 | 70.1 |
| MS.gene57681.t1 | MTR_1g079250 | 32.450 | 151 | 91 | 4 | 25 | 170 | 6 | 150 | 2.28e-13 | 69.3 |
| MS.gene57681.t1 | MTR_3g450990 | 28.378 | 148 | 92 | 5 | 23 | 167 | 10 | 146 | 2.02e-12 | 66.6 |
| MS.gene57681.t1 | MTR_3g006850 | 26.590 | 173 | 108 | 6 | 25 | 182 | 19 | 187 | 2.25e-11 | 63.5 |
| MS.gene57681.t1 | MTR_1g079350 | 25.339 | 221 | 137 | 8 | 25 | 234 | 6 | 209 | 4.24e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57681.t1 | AT3G61060 | 61.786 | 280 | 101 | 3 | 1 | 277 | 1 | 277 | 2.07e-126 | 362 |
| MS.gene57681.t1 | AT3G61060 | 61.566 | 281 | 101 | 4 | 1 | 277 | 1 | 278 | 1.05e-124 | 357 |
| MS.gene57681.t1 | AT1G12710 | 58.781 | 279 | 108 | 3 | 4 | 281 | 11 | 283 | 1.11e-115 | 335 |
| MS.gene57681.t1 | AT5G52120 | 56.371 | 259 | 110 | 1 | 23 | 278 | 21 | 279 | 1.19e-112 | 327 |
| MS.gene57681.t1 | AT1G12710 | 51.090 | 321 | 108 | 4 | 4 | 281 | 11 | 325 | 1.55e-106 | 313 |
| MS.gene57681.t1 | AT1G63090 | 57.348 | 279 | 110 | 4 | 4 | 281 | 11 | 281 | 7.30e-106 | 310 |
| MS.gene57681.t1 | AT3G53000 | 52.365 | 296 | 124 | 4 | 1 | 285 | 1 | 290 | 1.80e-104 | 306 |
| MS.gene57681.t1 | AT2G02360 | 32.911 | 158 | 95 | 3 | 27 | 181 | 18 | 167 | 2.79e-23 | 96.7 |
| MS.gene57681.t1 | AT1G09155 | 25.342 | 292 | 161 | 6 | 26 | 277 | 3 | 277 | 4.42e-23 | 96.3 |
| MS.gene57681.t1 | AT2G02240 | 27.481 | 262 | 165 | 7 | 26 | 275 | 64 | 312 | 6.13e-23 | 96.7 |
| MS.gene57681.t1 | AT1G80110 | 27.376 | 263 | 173 | 7 | 23 | 277 | 1 | 253 | 1.36e-22 | 94.4 |
| MS.gene57681.t1 | AT2G02340 | 32.515 | 163 | 101 | 3 | 23 | 182 | 36 | 192 | 3.57e-22 | 94.4 |
| MS.gene57681.t1 | AT2G02230 | 32.967 | 182 | 109 | 5 | 13 | 189 | 22 | 195 | 6.10e-22 | 94.0 |
| MS.gene57681.t1 | AT5G24560 | 27.273 | 165 | 105 | 3 | 25 | 182 | 5 | 161 | 4.34e-21 | 89.0 |
| MS.gene57681.t1 | AT2G02250 | 29.310 | 174 | 111 | 4 | 25 | 194 | 49 | 214 | 3.65e-19 | 85.9 |
| MS.gene57681.t1 | AT1G56250 | 28.641 | 206 | 128 | 3 | 26 | 229 | 4 | 192 | 1.23e-18 | 84.0 |
| MS.gene57681.t1 | AT2G02310 | 31.875 | 160 | 98 | 4 | 25 | 181 | 47 | 198 | 1.44e-17 | 81.6 |
| MS.gene57681.t1 | AT2G02320 | 24.476 | 286 | 156 | 11 | 23 | 277 | 40 | 296 | 2.36e-17 | 80.9 |
| MS.gene57681.t1 | AT2G02350 | 31.507 | 146 | 86 | 4 | 23 | 164 | 24 | 159 | 2.60e-17 | 80.5 |
| MS.gene57681.t1 | AT1G56240 | 24.068 | 295 | 161 | 8 | 26 | 277 | 4 | 278 | 3.37e-16 | 77.4 |
| MS.gene57681.t1 | AT2G02300 | 24.567 | 289 | 178 | 8 | 2 | 275 | 13 | 276 | 5.57e-14 | 70.9 |
Find 83 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTTGGTTTAGGAAATT+TGG | 0.134071 | 8.3:-61637318 | MS.gene57681:intron |
| AGTAGTTCTGGTGCTGAATT+AGG | 0.154613 | 8.3:-61637912 | MS.gene57681:CDS |
| TTGCGTATCTTCATCAAATT+TGG | 0.170894 | 8.3:-61636833 | MS.gene57681:CDS |
| GTTCCATTGTCAAACAAATT+AGG | 0.220564 | 8.3:+61637858 | None:intergenic |
| TGTATGTCCCTACTGGAAAT+TGG | 0.254973 | 8.3:+61636781 | None:intergenic |
| AACTCGTCGGCCGAGCTTCT+TGG | 0.292282 | 8.3:+61636725 | None:intergenic |
| CTCCAAAGCGTTAAGGATTA+CGG | 0.292357 | 8.3:-61637257 | MS.gene57681:CDS |
| AGCATTGGTGTTGATGTATT+TGG | 0.300604 | 8.3:-61638069 | MS.gene57681:CDS |
| CTGGATTGTCCAAATGAGTA+TGG | 0.340026 | 8.3:+61636619 | None:intergenic |
| GTCGTCAGCTGAAACTTTGC+AGG | 0.342371 | 8.3:+61636666 | None:intergenic |
| GAGGATGATACTAGTAGTTC+TGG | 0.343245 | 8.3:-61637924 | MS.gene57681:CDS |
| GAGGACTGGTGGGGTTTGTT+TGG | 0.351931 | 8.3:-61637287 | MS.gene57681:CDS |
| CCCCGTAATCCTTAACGCTT+TGG | 0.363217 | 8.3:+61637255 | None:intergenic |
| TGCTGTATCCCATACTCATT+TGG | 0.366142 | 8.3:-61636628 | MS.gene57681:CDS |
| GTTCTTTGAGACCAAGGCTT+GGG | 0.375162 | 8.3:-61638112 | MS.gene57681:CDS |
| GGATTGATGATCGCAGATAT+TGG | 0.386282 | 8.3:-61637234 | MS.gene57681:CDS |
| TCCAAAGCGTTAAGGATTAC+GGG | 0.392021 | 8.3:-61637256 | MS.gene57681:CDS |
| GTAAGCTAGCACGATTGAAT+AGG | 0.403310 | 8.3:-61638031 | MS.gene57681:CDS |
| CAATTTCCTCCAAAGCGTTA+AGG | 0.404456 | 8.3:-61637264 | MS.gene57681:CDS |
| GTTTATCATGGGGAAAGCTT+TGG | 0.404604 | 8.3:-61637946 | MS.gene57681:CDS |
| AGGAAATTTGGCTAGATAAG+AGG | 0.417127 | 8.3:-61637306 | MS.gene57681:CDS |
| GTTGAATTATGAGTTTATCA+TGG | 0.433360 | 8.3:-61637958 | MS.gene57681:CDS |
| GTAGTTCTGGTGCTGAATTA+GGG | 0.434606 | 8.3:-61637911 | MS.gene57681:CDS |
| CTTCGATTCCCAAACAAAAT+CGG | 0.438511 | 8.3:+61637986 | None:intergenic |
| TAAGCTAGCACGATTGAATA+GGG | 0.441465 | 8.3:-61638030 | MS.gene57681:CDS |
| CGTATCTTCATCAAATTTGG+TGG | 0.452939 | 8.3:-61636830 | MS.gene57681:CDS |
| TTGAATTATGAGTTTATCAT+GGG | 0.453294 | 8.3:-61637957 | MS.gene57681:CDS |
| AGACCGAGCACATCCATGGC+TGG | 0.472037 | 8.3:-61636698 | MS.gene57681:CDS |
| GATGAAGATACGCAACTGTA+TGG | 0.475160 | 8.3:+61636841 | None:intergenic |
| CATACTCATTTGGACAATCC+AGG | 0.476869 | 8.3:-61636618 | MS.gene57681:CDS |
| ACTTCAGACTTCACCTTGGC+AGG | 0.477175 | 8.3:-61636752 | MS.gene57681:CDS |
| TATCATGGGGAAAGCTTTGG+AGG | 0.486059 | 8.3:-61637943 | MS.gene57681:CDS |
| CGTGCTAGCTTACATATATC+CGG | 0.487725 | 8.3:+61638041 | None:intergenic |
| CGTAATCCTTAACGCTTTGG+AGG | 0.488223 | 8.3:+61637258 | None:intergenic |
| TACACACTGTATGTCCCTAC+TGG | 0.496964 | 8.3:+61636774 | None:intergenic |
| TTTCCTCATGTGTATGTGAT+GGG | 0.501023 | 8.3:-61638148 | MS.gene57681:CDS |
| ACCAATGCTACACAACTCTC+AGG | 0.508215 | 8.3:+61638083 | None:intergenic |
| TCAAATTTGGTGGCTTGAAG+TGG | 0.515749 | 8.3:-61636820 | MS.gene57681:CDS |
| TTGATTTCCAATTTCCAGTA+GGG | 0.525554 | 8.3:-61636788 | MS.gene57681:CDS |
| AAGCCTAATTTGTTTGACAA+TGG | 0.526555 | 8.3:-61637861 | MS.gene57681:CDS |
| TTTCAGCTGACGACTTCTGA+TGG | 0.534756 | 8.3:-61636657 | MS.gene57681:CDS |
| GGCTAGATAAGAGGACTGGT+GGG | 0.535196 | 8.3:-61637297 | MS.gene57681:CDS |
| GGCAGGTCATCCAAGAAGCT+CGG | 0.535630 | 8.3:-61636735 | MS.gene57681:CDS |
| AATAGATTGCACTCATACCA+AGG | 0.535661 | 8.3:-61636514 | MS.gene57681:CDS |
| ATTGATTTCCAATTTCCAGT+AGG | 0.547843 | 8.3:-61636789 | MS.gene57681:CDS |
| GTCGACACACAAACCACCCT+TGG | 0.552331 | 8.3:+61636497 | None:intergenic |
| ATGTGTATGTGATGGGGATG+AGG | 0.553783 | 8.3:-61638141 | MS.gene57681:CDS |
| ATTTGGACAATCCAGGGCAC+TGG | 0.554734 | 8.3:-61636611 | MS.gene57681:CDS |
| GACCGAGCACATCCATGGCT+GGG | 0.560312 | 8.3:-61636697 | MS.gene57681:CDS |
| ACCTGAGAGTTGTGTAGCAT+TGG | 0.564259 | 8.3:-61638084 | MS.gene57681:CDS |
| CAAAGTTTCCTACATGGTAG+AGG | 0.564462 | 8.3:+61636586 | None:intergenic |
| TTCTTTGAGACCAAGGCTTG+GGG | 0.565955 | 8.3:-61638111 | MS.gene57681:CDS |
| TGGTAGAGGATCCAGTGCCC+TGG | 0.568450 | 8.3:+61636600 | None:intergenic |
| TTCCTCATGTGTATGTGATG+GGG | 0.572484 | 8.3:-61638147 | MS.gene57681:CDS |
| CTGGTGCTGAATTAGGGAAG+AGG | 0.572659 | 8.3:-61637905 | MS.gene57681:CDS |
| ATCCCAGCCATGGATGTGCT+CGG | 0.573548 | 8.3:+61636695 | None:intergenic |
| ATTTGGTGGCTTGAAGTGGA+AGG | 0.573893 | 8.3:-61636816 | MS.gene57681:CDS |
| TAGAGACAAAGTTTCCTACA+TGG | 0.576728 | 8.3:+61636580 | None:intergenic |
| TGTAAGACCGAGCACATCCA+TGG | 0.577774 | 8.3:-61636702 | MS.gene57681:CDS |
| AGTTCTTTGAGACCAAGGCT+TGG | 0.578094 | 8.3:-61638113 | MS.gene57681:CDS |
| ATTGTAGTTCTTTGAGACCA+AGG | 0.580131 | 8.3:-61638118 | MS.gene57681:CDS |
| TGGCTAGATAAGAGGACTGG+TGG | 0.585604 | 8.3:-61637298 | MS.gene57681:CDS |
| TCAGGTATATCCCCAAGCCT+TGG | 0.585715 | 8.3:+61638101 | None:intergenic |
| ATGATAAACTCATAATTCAA+CGG | 0.590373 | 8.3:+61637960 | None:intergenic |
| TGGATTGTCCAAATGAGTAT+GGG | 0.593977 | 8.3:+61636620 | None:intergenic |
| GCTAGATAAGAGGACTGGTG+GGG | 0.594259 | 8.3:-61637296 | MS.gene57681:CDS |
| GTTGATGTATTTGGATCCAC+CGG | 0.598664 | 8.3:-61638060 | MS.gene57681:CDS |
| TTTGTTTGACAATGGAACCA+AGG | 0.599995 | 8.3:-61637853 | MS.gene57681:intron |
| TGGTGCTGAATTAGGGAAGA+GGG | 0.601797 | 8.3:-61637904 | MS.gene57681:CDS |
| GCTTCTTGGATGACCTGCCA+AGG | 0.607702 | 8.3:+61636739 | None:intergenic |
| GATTGCACTCATACCAAGGG+TGG | 0.619652 | 8.3:-61636510 | MS.gene57681:CDS |
| CACTGGATCCTCTACCATGT+AGG | 0.625677 | 8.3:-61636594 | MS.gene57681:CDS |
| ATTTGGCTAGATAAGAGGAC+TGG | 0.635322 | 8.3:-61637301 | MS.gene57681:CDS |
| CCAAAGCGTTAAGGATTACG+GGG | 0.637475 | 8.3:-61637255 | MS.gene57681:CDS |
| ACATTTCAACTGAAGAGTCA+AGG | 0.639529 | 8.3:-61637207 | MS.gene57681:intron |
| ATACTCATTTGGACAATCCA+GGG | 0.642583 | 8.3:-61636617 | MS.gene57681:CDS |
| GCTACTATTGCATATAAGCA+CGG | 0.643154 | 8.3:+61636473 | None:intergenic |
| GCTAGCTTACATATATCCGG+TGG | 0.658843 | 8.3:+61638044 | None:intergenic |
| TGAATTATGAGTTTATCATG+GGG | 0.664410 | 8.3:-61637956 | MS.gene57681:CDS |
| ATAGATTGCACTCATACCAA+GGG | 0.671071 | 8.3:-61636513 | MS.gene57681:CDS |
| ATCCCCATCACATACACATG+AGG | 0.678355 | 8.3:+61638145 | None:intergenic |
| GTGTACTTCAGACTTCACCT+TGG | 0.710985 | 8.3:-61636756 | MS.gene57681:CDS |
| GCTCGGTCTTACAAACTCGT+CGG | 0.720767 | 8.3:+61636712 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTATTTTGTGTATAAA+AGG | - | chr8.3:61636829-61636848 | MS.gene57681:CDS | 15.0% |
| !!! | CTTTTATTTTGTGTATAAAA+GGG | - | chr8.3:61636830-61636849 | MS.gene57681:CDS | 15.0% |
| !!! | TTATGTCAAAAATTTTACTT+TGG | - | chr8.3:61637281-61637300 | MS.gene57681:CDS | 15.0% |
| !! | ACTTATTAGGCTATAATATT+GGG | + | chr8.3:61637096-61637115 | None:intergenic | 20.0% |
| !! | ATGATAAACTCATAATTCAA+CGG | + | chr8.3:61636656-61636675 | None:intergenic | 20.0% |
| !! | ATTCTTGATTGTATGTAAAT+AGG | - | chr8.3:61637747-61637766 | MS.gene57681:intron | 20.0% |
| !! | TACTTATTAGGCTATAATAT+TGG | + | chr8.3:61637097-61637116 | None:intergenic | 20.0% |
| !! | TTGAATTATGAGTTTATCAT+GGG | - | chr8.3:61636656-61636675 | MS.gene57681:CDS | 20.0% |
| !!! | CAAAAATTTTACTTTGGTTT+AGG | - | chr8.3:61637287-61637306 | MS.gene57681:CDS | 20.0% |
| ! | CATGACATAACTTAATAAAG+TGG | + | chr8.3:61637242-61637261 | None:intergenic | 25.0% |
| ! | CTAACTTATTCTTGCAAAAT+CGG | + | chr8.3:61636985-61637004 | None:intergenic | 25.0% |
| ! | CTTGAATTCGTGATATTAAT+GGG | + | chr8.3:61637161-61637180 | None:intergenic | 25.0% |
| ! | GTTGAATTATGAGTTTATCA+TGG | - | chr8.3:61636655-61636674 | MS.gene57681:CDS | 25.0% |
| ! | TAGTTATGAAGATTGAAGAA+TGG | - | chr8.3:61637606-61637625 | MS.gene57681:intron | 25.0% |
| ! | TCGTTATCATAAATTCAAAG+TGG | + | chr8.3:61637052-61637071 | None:intergenic | 25.0% |
| ! | TCTTGAATTCGTGATATTAA+TGG | + | chr8.3:61637162-61637181 | None:intergenic | 25.0% |
| ! | TGAATTATGAGTTTATCATG+GGG | - | chr8.3:61636657-61636676 | MS.gene57681:CDS | 25.0% |
| !! | TGTGTTTTCATCTTTATGAA+TGG | - | chr8.3:61637492-61637511 | MS.gene57681:intron | 25.0% |
| !! | TTACTTTGGTTTAGGAAATT+TGG | - | chr8.3:61637295-61637314 | MS.gene57681:CDS | 25.0% |
| !!! | ATTTTTTTCCAATACTACCA+AGG | + | chr8.3:61636891-61636910 | None:intergenic | 25.0% |
| AACTTAATCTCTTATCAACG+TGG | + | chr8.3:61636920-61636939 | None:intergenic | 30.0% | |
| AGTGGAATCAATCAATCAAA+GGG | + | chr8.3:61637560-61637579 | None:intergenic | 30.0% | |
| ATCAAGTTCAAACATAACTG+CGG | + | chr8.3:61637719-61637738 | None:intergenic | 30.0% | |
| CACATAAAAACTTAGTATCG+TGG | - | chr8.3:61637197-61637216 | MS.gene57681:intron | 30.0% | |
| GTTCCATTGTCAAACAAATT+AGG | + | chr8.3:61636758-61636777 | None:intergenic | 30.0% | |
| TATTAGGCTATAATATTGGG+TGG | + | chr8.3:61637093-61637112 | None:intergenic | 30.0% | |
| TTGATTTCCAATTTCCAGTA+GGG | - | chr8.3:61637825-61637844 | MS.gene57681:intron | 30.0% | |
| TTGCGTATCTTCATCAAATT+TGG | - | chr8.3:61637780-61637799 | MS.gene57681:intron | 30.0% | |
| ! | AATGGGTTTCTATTTCACTT+TGG | + | chr8.3:61637144-61637163 | None:intergenic | 30.0% |
| ! | ATTGATTGATTCCACTGTAT+TGG | - | chr8.3:61637564-61637583 | MS.gene57681:intron | 30.0% |
| ! | ATTGATTTCCAATTTCCAGT+AGG | - | chr8.3:61637824-61637843 | MS.gene57681:intron | 30.0% |
| !! | AAGCCTAATTTGTTTGACAA+TGG | - | chr8.3:61636752-61636771 | MS.gene57681:CDS | 30.0% |
| !! | CTATAATATTGGGTGGATTT+TGG | + | chr8.3:61637086-61637105 | None:intergenic | 30.0% |
| !!! | TTCTTTTGCCGATTTTGTTT+GGG | - | chr8.3:61636619-61636638 | MS.gene57681:CDS | 30.0% |
| AATAGATTGCACTCATACCA+AGG | - | chr8.3:61638099-61638118 | MS.gene57681:CDS | 35.0% | |
| ACATTTCAACTGAAGAGTCA+AGG | - | chr8.3:61637406-61637425 | MS.gene57681:intron | 35.0% | |
| AGGAAATTTGGCTAGATAAG+AGG | - | chr8.3:61637307-61637326 | MS.gene57681:CDS | 35.0% | |
| ATACTCATTTGGACAATCCA+GGG | - | chr8.3:61637996-61638015 | MS.gene57681:CDS | 35.0% | |
| ATAGATTGCACTCATACCAA+GGG | - | chr8.3:61638100-61638119 | MS.gene57681:CDS | 35.0% | |
| ATGAGCCAAAATTGTTACCT+TGG | + | chr8.3:61636780-61636799 | None:intergenic | 35.0% | |
| CAATGAGTCAGGTTCTATAA+TGG | + | chr8.3:61637466-61637485 | None:intergenic | 35.0% | |
| CAGTGGAATCAATCAATCAA+AGG | + | chr8.3:61637561-61637580 | None:intergenic | 35.0% | |
| CGTATCTTCATCAAATTTGG+TGG | - | chr8.3:61637783-61637802 | MS.gene57681:intron | 35.0% | |
| CTTCGATTCCCAAACAAAAT+CGG | + | chr8.3:61636630-61636649 | None:intergenic | 35.0% | |
| GCTACTATTGCATATAAGCA+CGG | + | chr8.3:61638143-61638162 | None:intergenic | 35.0% | |
| TAAGCTAGCACGATTGAATA+GGG | - | chr8.3:61636583-61636602 | MS.gene57681:CDS | 35.0% | |
| TAGAGACAAAGTTTCCTACA+TGG | + | chr8.3:61638036-61638055 | None:intergenic | 35.0% | |
| TCAAGTTCAAACATAACTGC+GGG | + | chr8.3:61637718-61637737 | None:intergenic | 35.0% | |
| TCATAACCATTGTGAAGAGT+TGG | + | chr8.3:61637647-61637666 | None:intergenic | 35.0% | |
| TGGATTGTCCAAATGAGTAT+GGG | + | chr8.3:61637996-61638015 | None:intergenic | 35.0% | |
| TTTCCTCATGTGTATGTGAT+GGG | - | chr8.3:61636465-61636484 | MS.gene57681:CDS | 35.0% | |
| TTTGTTTGACAATGGAACCA+AGG | - | chr8.3:61636760-61636779 | MS.gene57681:CDS | 35.0% | |
| ! | ACTTTTCCAACTCTTCACAA+TGG | - | chr8.3:61637638-61637657 | MS.gene57681:intron | 35.0% |
| ! | TGGAACCAAGGTAACAATTT+TGG | - | chr8.3:61636772-61636791 | MS.gene57681:CDS | 35.0% |
| ! | TTTTCCTCATGTGTATGTGA+TGG | - | chr8.3:61636464-61636483 | MS.gene57681:CDS | 35.0% |
| !! | AATATTGGGTGGATTTTGGT+TGG | + | chr8.3:61637082-61637101 | None:intergenic | 35.0% |
| !! | AGCATTGGTGTTGATGTATT+TGG | - | chr8.3:61636544-61636563 | MS.gene57681:CDS | 35.0% |
| !! | ATTGTAGTTCTTTGAGACCA+AGG | - | chr8.3:61636495-61636514 | MS.gene57681:CDS | 35.0% |
| !!! | CTTCTTTTGCCGATTTTGTT+TGG | - | chr8.3:61636618-61636637 | MS.gene57681:CDS | 35.0% |
| AAGTTCAAACATAACTGCGG+GGG | + | chr8.3:61637716-61637735 | None:intergenic | 40.0% | |
| AATACTACCAAGGATCCGAA+TGG | + | chr8.3:61636881-61636900 | None:intergenic | 40.0% | |
| ACACAGCATAACAATGAGTC+AGG | + | chr8.3:61637477-61637496 | None:intergenic | 40.0% | |
| AGAAAGTGAGTCCAATACAG+TGG | + | chr8.3:61637578-61637597 | None:intergenic | 40.0% | |
| ATCCAATACCAACTCTACTG+TGG | - | chr8.3:61637666-61637685 | MS.gene57681:intron | 40.0% | |
| ATCCATATCCACAGTAGAGT+TGG | + | chr8.3:61637677-61637696 | None:intergenic | 40.0% | |
| ATTTGGCTAGATAAGAGGAC+TGG | - | chr8.3:61637312-61637331 | MS.gene57681:intron | 40.0% | |
| CAAAGTTTCCTACATGGTAG+AGG | + | chr8.3:61638030-61638049 | None:intergenic | 40.0% | |
| CAAGTTCAAACATAACTGCG+GGG | + | chr8.3:61637717-61637736 | None:intergenic | 40.0% | |
| CATACTCATTTGGACAATCC+AGG | - | chr8.3:61637995-61638014 | MS.gene57681:CDS | 40.0% | |
| CTGGATTGTCCAAATGAGTA+TGG | + | chr8.3:61637997-61638016 | None:intergenic | 40.0% | |
| GACTGCACAAGCTACTTATT+AGG | + | chr8.3:61637109-61637128 | None:intergenic | 40.0% | |
| GAGGATGATACTAGTAGTTC+TGG | - | chr8.3:61636689-61636708 | MS.gene57681:CDS | 40.0% | |
| GATGAAGATACGCAACTGTA+TGG | + | chr8.3:61637775-61637794 | None:intergenic | 40.0% | |
| GTAAGCTAGCACGATTGAAT+AGG | - | chr8.3:61636582-61636601 | MS.gene57681:CDS | 40.0% | |
| GTTGATGTATTTGGATCCAC+CGG | - | chr8.3:61636553-61636572 | MS.gene57681:CDS | 40.0% | |
| GTTTATCATGGGGAAAGCTT+TGG | - | chr8.3:61636667-61636686 | MS.gene57681:CDS | 40.0% | |
| TACCAACTCTACTGTGGATA+TGG | - | chr8.3:61637672-61637691 | MS.gene57681:intron | 40.0% | |
| TGCTGTATCCCATACTCATT+TGG | - | chr8.3:61637985-61638004 | MS.gene57681:CDS | 40.0% | |
| TGTATGTCCCTACTGGAAAT+TGG | + | chr8.3:61637835-61637854 | None:intergenic | 40.0% | |
| TTCCTCATGTGTATGTGATG+GGG | - | chr8.3:61636466-61636485 | MS.gene57681:CDS | 40.0% | |
| ! | ATTCGGATCCTTGGTAGTAT+TGG | - | chr8.3:61636880-61636899 | MS.gene57681:intron | 40.0% |
| ! | CAATTTCCTCCAAAGCGTTA+AGG | - | chr8.3:61637349-61637368 | MS.gene57681:intron | 40.0% |
| ! | CGTGCTAGCTTACATATATC+CGG | + | chr8.3:61636575-61636594 | None:intergenic | 40.0% |
| ! | CTCCAAAGCGTTAAGGATTA+CGG | - | chr8.3:61637356-61637375 | MS.gene57681:intron | 40.0% |
| ! | CTTGCAAAATCGGCTTTGTA+AGG | + | chr8.3:61636975-61636994 | None:intergenic | 40.0% |
| ! | GGATTGATGATCGCAGATAT+TGG | - | chr8.3:61637379-61637398 | MS.gene57681:intron | 40.0% |
| ! | TCAAATTTGGTGGCTTGAAG+TGG | - | chr8.3:61637793-61637812 | MS.gene57681:intron | 40.0% |
| ! | TCCAAAGCGTTAAGGATTAC+GGG | - | chr8.3:61637357-61637376 | MS.gene57681:intron | 40.0% |
| !! | AGTAGTTCTGGTGCTGAATT+AGG | - | chr8.3:61636701-61636720 | MS.gene57681:CDS | 40.0% |
| !! | ATCCACAGTAGAGTTGGTAT+TGG | + | chr8.3:61637671-61637690 | None:intergenic | 40.0% |
| !! | GTAGTTCTGGTGCTGAATTA+GGG | - | chr8.3:61636702-61636721 | MS.gene57681:CDS | 40.0% |
| !!! | GGGTTTTGAATTCTCTCAAG+CGG | - | chr8.3:61636850-61636869 | MS.gene57681:intron | 40.0% |
| ACCAATGCTACACAACTCTC+AGG | + | chr8.3:61636533-61636552 | None:intergenic | 45.0% | |
| ACCTGAGAGTTGTGTAGCAT+TGG | - | chr8.3:61636529-61636548 | MS.gene57681:CDS | 45.0% | |
| ATCCCCATCACATACACATG+AGG | + | chr8.3:61636471-61636490 | None:intergenic | 45.0% | |
| CGTAATCCTTAACGCTTTGG+AGG | + | chr8.3:61637358-61637377 | None:intergenic | 45.0% | |
| GTGTACTTCAGACTTCACCT+TGG | - | chr8.3:61637857-61637876 | MS.gene57681:CDS | 45.0% | |
| TACACACTGTATGTCCCTAC+TGG | + | chr8.3:61637842-61637861 | None:intergenic | 45.0% | |
| TCAACTGAAGAGTCAAGGTG+AGG | - | chr8.3:61637411-61637430 | MS.gene57681:intron | 45.0% | |
| TTTCAGCTGACGACTTCTGA+TGG | - | chr8.3:61637956-61637975 | MS.gene57681:CDS | 45.0% | |
| ! | ATGTGTATGTGATGGGGATG+AGG | - | chr8.3:61636472-61636491 | MS.gene57681:CDS | 45.0% |
| ! | ATTTGGTGGCTTGAAGTGGA+AGG | - | chr8.3:61637797-61637816 | MS.gene57681:intron | 45.0% |
| ! | CCAAAGCGTTAAGGATTACG+GGG | - | chr8.3:61637358-61637377 | MS.gene57681:intron | 45.0% |
| ! | GCTAGCTTACATATATCCGG+TGG | + | chr8.3:61636572-61636591 | None:intergenic | 45.0% |
| ! | TATCATGGGGAAAGCTTTGG+AGG | - | chr8.3:61636670-61636689 | MS.gene57681:CDS | 45.0% |
| ! | TGGTGCTGAATTAGGGAAGA+GGG | - | chr8.3:61636709-61636728 | MS.gene57681:CDS | 45.0% |
| !! | AGTTCTTTGAGACCAAGGCT+TGG | - | chr8.3:61636500-61636519 | MS.gene57681:CDS | 45.0% |
| !! | CAGGTTTTATATCCCAGCCA+TGG | + | chr8.3:61637931-61637950 | None:intergenic | 45.0% |
| !! | GTTCTTTGAGACCAAGGCTT+GGG | - | chr8.3:61636501-61636520 | MS.gene57681:CDS | 45.0% |
| !! | TTCTTTGAGACCAAGGCTTG+GGG | - | chr8.3:61636502-61636521 | MS.gene57681:CDS | 45.0% |
| !! | CAAAAAAAAAAAAAAAATTT+CGG | + | chr8.3:61637537-61637556 | None:intergenic | 5.0% |
| ACTTCAGACTTCACCTTGGC+AGG | - | chr8.3:61637861-61637880 | MS.gene57681:CDS | 50.0% | |
| ATTTGGACAATCCAGGGCAC+TGG | - | chr8.3:61638002-61638021 | MS.gene57681:CDS | 50.0% | |
| CACTGGATCCTCTACCATGT+AGG | - | chr8.3:61638019-61638038 | MS.gene57681:CDS | 50.0% | |
| CCCCGTAATCCTTAACGCTT+TGG | + | chr8.3:61637361-61637380 | None:intergenic | 50.0% | |
| GATTGCACTCATACCAAGGG+TGG | - | chr8.3:61638103-61638122 | MS.gene57681:CDS | 50.0% | |
| GCTCGGTCTTACAAACTCGT+CGG | + | chr8.3:61637904-61637923 | None:intergenic | 50.0% | |
| GTCGTCAGCTGAAACTTTGC+AGG | + | chr8.3:61637950-61637969 | None:intergenic | 50.0% | |
| TCAGGTATATCCCCAAGCCT+TGG | + | chr8.3:61636515-61636534 | None:intergenic | 50.0% | |
| TCTCAAGCGGCTACACCATT+CGG | - | chr8.3:61636863-61636882 | MS.gene57681:intron | 50.0% | |
| TGGCTAGATAAGAGGACTGG+TGG | - | chr8.3:61637315-61637334 | MS.gene57681:intron | 50.0% | |
| TGTAAGACCGAGCACATCCA+TGG | - | chr8.3:61637911-61637930 | MS.gene57681:CDS | 50.0% | |
| ! | CTGGTGCTGAATTAGGGAAG+AGG | - | chr8.3:61636708-61636727 | MS.gene57681:CDS | 50.0% |
| ! | GCTAGATAAGAGGACTGGTG+GGG | - | chr8.3:61637317-61637336 | MS.gene57681:intron | 50.0% |
| ! | GGCTAGATAAGAGGACTGGT+GGG | - | chr8.3:61637316-61637335 | MS.gene57681:intron | 50.0% |
| ATCCCAGCCATGGATGTGCT+CGG | + | chr8.3:61637921-61637940 | None:intergenic | 55.0% | |
| GCTTCTTGGATGACCTGCCA+AGG | + | chr8.3:61637877-61637896 | None:intergenic | 55.0% | |
| GGCAGGTCATCCAAGAAGCT+CGG | - | chr8.3:61637878-61637897 | MS.gene57681:CDS | 55.0% | |
| GGCTACACCATTCGGATCCT+TGG | - | chr8.3:61636871-61636890 | MS.gene57681:intron | 55.0% | |
| GTCGACACACAAACCACCCT+TGG | + | chr8.3:61638119-61638138 | None:intergenic | 55.0% | |
| ! | GAGGACTGGTGGGGTTTGTT+TGG | - | chr8.3:61637326-61637345 | MS.gene57681:intron | 55.0% |
| AACTCGTCGGCCGAGCTTCT+TGG | + | chr8.3:61637891-61637910 | None:intergenic | 60.0% | |
| AGACCGAGCACATCCATGGC+TGG | - | chr8.3:61637915-61637934 | MS.gene57681:CDS | 60.0% | |
| GACCGAGCACATCCATGGCT+GGG | - | chr8.3:61637916-61637935 | MS.gene57681:CDS | 60.0% | |
| TGGTAGAGGATCCAGTGCCC+TGG | + | chr8.3:61638016-61638035 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 61636452 | 61638183 | 61636452 | ID=MS.gene57681 |
| chr8.3 | mRNA | 61636452 | 61638183 | 61636452 | ID=MS.gene57681.t1;Parent=MS.gene57681 |
| chr8.3 | exon | 61637854 | 61638183 | 61637854 | ID=MS.gene57681.t1.exon1;Parent=MS.gene57681.t1 |
| chr8.3 | CDS | 61637854 | 61638183 | 61637854 | ID=cds.MS.gene57681.t1;Parent=MS.gene57681.t1 |
| chr8.3 | exon | 61637208 | 61637326 | 61637208 | ID=MS.gene57681.t1.exon2;Parent=MS.gene57681.t1 |
| chr8.3 | CDS | 61637208 | 61637326 | 61637208 | ID=cds.MS.gene57681.t1;Parent=MS.gene57681.t1 |
| chr8.3 | exon | 61636452 | 61636866 | 61636452 | ID=MS.gene57681.t1.exon3;Parent=MS.gene57681.t1 |
| chr8.3 | CDS | 61636452 | 61636866 | 61636452 | ID=cds.MS.gene57681.t1;Parent=MS.gene57681.t1 |
| Gene Sequence |
| Protein sequence |
