Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57886.t1 | XP_003618033.1 | 98.1 | 213 | 4 | 0 | 1 | 213 | 2 | 214 | 5.00E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57886.t1 | Q9S7M9 | 75.7 | 202 | 49 | 0 | 12 | 213 | 7 | 208 | 1.4e-86 | 320.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57886.t1 | G7K0K7 | 98.1 | 213 | 4 | 0 | 1 | 213 | 2 | 214 | 3.6e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57886 | MS.gene027563 | PPI |
| MS.gene68324 | MS.gene57886 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57886.t1 | MTR_5g098250 | 98.122 | 213 | 4 | 0 | 1 | 213 | 2 | 214 | 1.91e-158 | 436 |
| MS.gene57886.t1 | MTR_5g098250 | 98.122 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 1.97e-158 | 436 |
| MS.gene57886.t1 | MTR_3g060210 | 71.287 | 202 | 53 | 2 | 13 | 209 | 8 | 209 | 3.73e-104 | 299 |
| MS.gene57886.t1 | MTR_1g102720 | 34.742 | 213 | 139 | 0 | 1 | 213 | 1 | 213 | 1.49e-40 | 137 |
| MS.gene57886.t1 | MTR_7g095690 | 35.437 | 206 | 131 | 1 | 8 | 213 | 8 | 211 | 2.20e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57886.t1 | AT3G07680 | 75.369 | 203 | 50 | 0 | 11 | 213 | 6 | 208 | 3.76e-116 | 329 |
| MS.gene57886.t1 | AT3G22845 | 37.850 | 214 | 131 | 1 | 2 | 213 | 1 | 214 | 7.81e-45 | 149 |
| MS.gene57886.t1 | AT3G22845 | 39.416 | 137 | 81 | 1 | 2 | 136 | 1 | 137 | 6.61e-25 | 96.7 |
Find 36 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATTCTCCTTGGCATTA+TGG | 0.233913 | 5.2:+82702307 | MS.gene57886:CDS |
| GCTAGAGCAGATAGCAAAAT+TGG | 0.242383 | 5.2:+82703498 | MS.gene57886:CDS |
| AGAAGAGGCATTACCGTCTT+TGG | 0.277250 | 5.2:-82703338 | None:intergenic |
| CGCTTGTTTGAGCGAAAGTT+GGG | 0.369721 | 5.2:+82704713 | MS.gene57886:CDS |
| ATGTGACAATTTCAGGTAAA+GGG | 0.389800 | 5.2:+82703145 | MS.gene57886:intron |
| TTTGAATCAGCAGCACTGAT+TGG | 0.396380 | 5.2:+82704659 | MS.gene57886:CDS |
| GAGACATAGTTGTTGTGTTA+TGG | 0.415360 | 5.2:+82702147 | MS.gene57886:CDS |
| CAAACCGACCGCCAAGCAAT+AGG | 0.422507 | 5.2:+82703568 | MS.gene57886:CDS |
| TTCAAATAATACCTATTGCT+TGG | 0.424603 | 5.2:-82703579 | None:intergenic |
| GTGCTTTGTGTACTGCTCTT+CGG | 0.425187 | 5.2:-82704634 | None:intergenic |
| TTATTAAGGCTGATTCTCCT+TGG | 0.450821 | 5.2:+82702299 | MS.gene57886:CDS |
| ACGCTTGTTTGAGCGAAAGT+TGG | 0.460724 | 5.2:+82704712 | MS.gene57886:CDS |
| TTGCTATCTGCTCTAGCAAA+GGG | 0.461945 | 5.2:-82703492 | None:intergenic |
| AAATCGATGGTCTCATGATA+AGG | 0.471604 | 5.2:-82703274 | None:intergenic |
| AAACAGAACTTATGAACTCC+TGG | 0.500426 | 5.2:-82703238 | None:intergenic |
| CCTTGGCATTATGGTGATGA+AGG | 0.507688 | 5.2:+82702316 | MS.gene57886:CDS |
| GTACGGAATGCAGTGAATGA+TGG | 0.525912 | 5.2:+82704605 | MS.gene57886:intron |
| AAATAATACCTATTGCTTGG+CGG | 0.527484 | 5.2:-82703576 | None:intergenic |
| ATATTCAGTTTGAACAACAT+TGG | 0.531911 | 5.2:+82703536 | MS.gene57886:CDS |
| GAATTTGTTGCTCACAAACC+AGG | 0.531992 | 5.2:+82703220 | MS.gene57886:CDS |
| TTTCAGGTAAAGGGGCCGGC+TGG | 0.544677 | 5.2:+82703154 | MS.gene57886:intron |
| ACAATTTCAGGTAAAGGGGC+CGG | 0.552733 | 5.2:+82703150 | MS.gene57886:intron |
| TCTTGAATTTGTTCACCAGC+CGG | 0.553254 | 5.2:-82703169 | None:intergenic |
| CTCATGATAAGGAGATTTGT+TGG | 0.556826 | 5.2:-82703263 | None:intergenic |
| TGTTGTTGAAAGAAACAGAA+GGG | 0.572521 | 5.2:+82702194 | MS.gene57886:CDS |
| TTTGCTATCTGCTCTAGCAA+AGG | 0.575851 | 5.2:-82703493 | None:intergenic |
| TACGGAATGCAGTGAATGAT+GGG | 0.591025 | 5.2:+82704606 | MS.gene57886:intron |
| AATACCTATTGCTTGGCGGT+CGG | 0.591113 | 5.2:-82703572 | None:intergenic |
| GTCCTAACTCTAAACTCTAG+AGG | 0.612983 | 5.2:-82704738 | None:intergenic |
| TTTGAGCAACATGCCAAAGA+CGG | 0.617409 | 5.2:+82703325 | MS.gene57886:CDS |
| TCACATGATGTGAAGTATGA+AGG | 0.618409 | 5.2:+82702250 | MS.gene57886:CDS |
| AACATGCACATCAAAATCGA+TGG | 0.621801 | 5.2:-82703287 | None:intergenic |
| TGTGACAATTTCAGGTAAAG+GGG | 0.645937 | 5.2:+82703146 | MS.gene57886:intron |
| TGATGAAGGTGTAGATCTTG+TGG | 0.649735 | 5.2:+82702330 | MS.gene57886:CDS |
| TTGTTGTTGAAAGAAACAGA+AGG | 0.660308 | 5.2:+82702193 | MS.gene57886:CDS |
| CCTTCATCACCATAATGCCA+AGG | 0.663178 | 5.2:-82702316 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGTGACAATAATAT+TGG | - | chr5.2:82703725-82703744 | None:intergenic | 15.0% |
| !! | AATATAAATGATACACATTT+AGG | + | chr5.2:82702968-82702987 | MS.gene57886:intron | 15.0% |
| !! | CTTTGTATCATATAAATATA+GGG | - | chr5.2:82702688-82702707 | None:intergenic | 15.0% |
| !! | AGTAAAATAAGAACAAAACT+TGG | - | chr5.2:82703848-82703867 | None:intergenic | 20.0% |
| !! | CATCATATCATATGAAATTA+AGG | - | chr5.2:82702407-82702426 | None:intergenic | 20.0% |
| !! | GCTTTGTATCATATAAATAT+AGG | - | chr5.2:82702689-82702708 | None:intergenic | 20.0% |
| !! | TCAATTTGTATATAGTGATT+TGG | + | chr5.2:82703367-82703386 | MS.gene57886:intron | 20.0% |
| !!! | ACAAATTGATTTAATAGAAG+AGG | - | chr5.2:82703356-82703375 | None:intergenic | 20.0% |
| !!! | AGTTTTGTCCAAATAATAAT+TGG | - | chr5.2:82703664-82703683 | None:intergenic | 20.0% |
| !!! | GTTATTTCTTTCTAGATATT+GGG | + | chr5.2:82702755-82702774 | MS.gene57886:intron | 20.0% |
| !!! | TAAATATCGTGTTTTTTGTA+CGG | + | chr5.2:82704588-82704607 | MS.gene57886:intron | 20.0% |
| !!! | TAGATTAATTTTGATACACT+CGG | + | chr5.2:82702446-82702465 | MS.gene57886:intron | 20.0% |
| !!! | TGTTATTTCTTTCTAGATAT+TGG | + | chr5.2:82702754-82702773 | MS.gene57886:intron | 20.0% |
| !!! | TGTTTCTTTTGTTGTTATTA+AGG | + | chr5.2:82702285-82702304 | MS.gene57886:CDS | 20.0% |
| !!! | TTTAGTTTATATATGACATC+TGG | + | chr5.2:82703893-82703912 | MS.gene57886:intron | 20.0% |
| ! | AAAGGATGCAAGTAAATATA+TGG | - | chr5.2:82704474-82704493 | None:intergenic | 25.0% |
| ! | AGAAACTATTAGGAAAGATT+TGG | + | chr5.2:82704223-82704242 | MS.gene57886:intron | 25.0% |
| ! | AGATTTGGAAATTTATGAGT+TGG | + | chr5.2:82704238-82704257 | MS.gene57886:intron | 25.0% |
| ! | ATATTCAGTTTGAACAACAT+TGG | + | chr5.2:82703536-82703555 | MS.gene57886:CDS | 25.0% |
| ! | CAACATAATCAGAGATATTA+CGG | - | chr5.2:82703107-82703126 | None:intergenic | 25.0% |
| ! | CATGTTTCGATATATCTAAA+TGG | - | chr5.2:82704451-82704470 | None:intergenic | 25.0% |
| ! | GATAGATATGTGAATTTGTA+TGG | - | chr5.2:82703054-82703073 | None:intergenic | 25.0% |
| ! | GGTATAAATGATACACATTT+AGG | + | chr5.2:82702888-82702907 | MS.gene57886:intron | 25.0% |
| ! | TATCTAGAAAGAAATAACAG+TGG | - | chr5.2:82702753-82702772 | None:intergenic | 25.0% |
| ! | TCCACAAACCAATTATTATT+TGG | + | chr5.2:82703653-82703672 | MS.gene57886:intron | 25.0% |
| ! | TTCAAATAATACCTATTGCT+TGG | - | chr5.2:82703582-82703601 | None:intergenic | 25.0% |
| ! | TTCTATCATACACCATATTT+CGG | - | chr5.2:82704265-82704284 | None:intergenic | 25.0% |
| !! | AGAGTTTTTATAGGGTTAAT+CGG | - | chr5.2:82702639-82702658 | None:intergenic | 25.0% |
| !! | AGGTATTTTTCTGTGTATTA+GGG | + | chr5.2:82702908-82702927 | MS.gene57886:intron | 25.0% |
| !! | CGATGTATAGAGTTTTTATA+GGG | - | chr5.2:82702647-82702666 | None:intergenic | 25.0% |
| !! | TAGGTATTTTTCTGTGTATT+AGG | + | chr5.2:82702907-82702926 | MS.gene57886:intron | 25.0% |
| !! | TCGATGTATAGAGTTTTTAT+AGG | - | chr5.2:82702648-82702667 | None:intergenic | 25.0% |
| !!! | CTTATTATTTCTAGAACAAG+TGG | - | chr5.2:82703076-82703095 | None:intergenic | 25.0% |
| !!! | TCCAAATAATAATTGGTTTG+TGG | - | chr5.2:82703657-82703676 | None:intergenic | 25.0% |
| !!! | TGTCACAAATTTTTTTGAGT+AGG | + | chr5.2:82703732-82703751 | MS.gene57886:intron | 25.0% |
| !!! | TTATGGTGATTGTTTTGATT+GGG | + | chr5.2:82702164-82702183 | MS.gene57886:CDS | 25.0% |
| AAAAATCGTCTCTTTGTCAA+AGG | + | chr5.2:82703786-82703805 | MS.gene57886:intron | 30.0% | |
| AAACCATCTGAGAAACTATT+AGG | + | chr5.2:82704213-82704232 | MS.gene57886:intron | 30.0% | |
| AAACTTACGAACAGTTTCAT+AGG | + | chr5.2:82703679-82703698 | MS.gene57886:intron | 30.0% | |
| AAATAATACCTATTGCTTGG+CGG | - | chr5.2:82703579-82703598 | None:intergenic | 30.0% | |
| AGATGTGATAAGATTTAGAG+AGG | + | chr5.2:82704113-82704132 | MS.gene57886:intron | 30.0% | |
| CAGTCAACTTTGATCATAAT+TGG | - | chr5.2:82702484-82702503 | None:intergenic | 30.0% | |
| CGTAATATCTCTGATTATGT+TGG | + | chr5.2:82703105-82703124 | MS.gene57886:intron | 30.0% | |
| CGTTATTTAATCCATGTAGT+GGG | + | chr5.2:82704293-82704312 | MS.gene57886:intron | 30.0% | |
| GTAGTCAAAATTTGAGTCAT+TGG | - | chr5.2:82704393-82704412 | None:intergenic | 30.0% | |
| TGACTGTTATGACTGATTAA+CGG | + | chr5.2:82702498-82702517 | MS.gene57886:intron | 30.0% | |
| TGAGAATAAAATAAGCGTAG+TGG | + | chr5.2:82704055-82704074 | MS.gene57886:intron | 30.0% | |
| TGGCAAACATTCATTATTGT+TGG | - | chr5.2:82702717-82702736 | None:intergenic | 30.0% | |
| TGGTGTATGATAGAACATTA+TGG | + | chr5.2:82704270-82704289 | MS.gene57886:intron | 30.0% | |
| TGTTGTTGAAAGAAACAGAA+GGG | + | chr5.2:82702194-82702213 | MS.gene57886:CDS | 30.0% | |
| TTTCCTAATAGTTTCTCAGA+TGG | - | chr5.2:82704219-82704238 | None:intergenic | 30.0% | |
| ! | ATGTGACAATTTCAGGTAAA+GGG | + | chr5.2:82703145-82703164 | MS.gene57886:intron | 30.0% |
| ! | TTGTTGTTGAAAGAAACAGA+AGG | + | chr5.2:82702193-82702212 | MS.gene57886:CDS | 30.0% |
| !!! | GTGCTACTTTTTACAACTTT+AGG | + | chr5.2:82702867-82702886 | MS.gene57886:intron | 30.0% |
| !!! | GTTATGGTGATTGTTTTGAT+TGG | + | chr5.2:82702163-82702182 | MS.gene57886:CDS | 30.0% |
| AAACAGAACTTATGAACTCC+TGG | - | chr5.2:82703241-82703260 | None:intergenic | 35.0% | |
| AAATAACAGTGGCATGGTTA+TGG | - | chr5.2:82702742-82702761 | None:intergenic | 35.0% | |
| AAATCGATGGTCTCATGATA+AGG | - | chr5.2:82703277-82703296 | None:intergenic | 35.0% | |
| AACATGCACATCAAAATCGA+TGG | - | chr5.2:82703290-82703309 | None:intergenic | 35.0% | |
| ACAGTTCATTCATCTAGGAA+AGG | - | chr5.2:82704492-82704511 | None:intergenic | 35.0% | |
| AGAAAGAAATAACAGTGGCA+TGG | - | chr5.2:82702748-82702767 | None:intergenic | 35.0% | |
| AGTCAAATTACTAGAGGCAA+AGG | + | chr5.2:82704179-82704198 | MS.gene57886:intron | 35.0% | |
| CTCATGATAAGGAGATTTGT+TGG | - | chr5.2:82703266-82703285 | None:intergenic | 35.0% | |
| CTTTACCTGAAATTGTCACA+TGG | - | chr5.2:82703146-82703165 | None:intergenic | 35.0% | |
| GACATCTAGATTCTGTAGTA+GGG | + | chr5.2:82704135-82704154 | MS.gene57886:intron | 35.0% | |
| GAGACATAGTTGTTGTGTTA+TGG | + | chr5.2:82702147-82702166 | MS.gene57886:CDS | 35.0% | |
| GAGGATAGTCAAATTACTAG+AGG | + | chr5.2:82704173-82704192 | MS.gene57886:intron | 35.0% | |
| GCATTTAATCATGAGATGAG+AGG | - | chr5.2:82704423-82704442 | None:intergenic | 35.0% | |
| GCGTTATTTAATCCATGTAG+TGG | + | chr5.2:82704292-82704311 | MS.gene57886:intron | 35.0% | |
| GGACAGGAAATTCTACTAAA+TGG | - | chr5.2:82703936-82703955 | None:intergenic | 35.0% | |
| TAAAGTCACACAGATAGGAT+TGG | - | chr5.2:82702557-82702576 | None:intergenic | 35.0% | |
| TCACATGATGTGAAGTATGA+AGG | + | chr5.2:82702250-82702269 | MS.gene57886:CDS | 35.0% | |
| TGACTGATTAACGGTGTAAA+AGG | + | chr5.2:82702507-82702526 | MS.gene57886:intron | 35.0% | |
| TTTCCTAGATGAATGAACTG+TGG | + | chr5.2:82704491-82704510 | MS.gene57886:intron | 35.0% | |
| ! | CATGTGACAATTTCAGGTAA+AGG | + | chr5.2:82703144-82703163 | MS.gene57886:intron | 35.0% |
| ! | TGTGACAATTTCAGGTAAAG+GGG | + | chr5.2:82703146-82703165 | MS.gene57886:intron | 35.0% |
| ! | TTAATCCATGTAGTGGGAAA+AGG | + | chr5.2:82704299-82704318 | MS.gene57886:intron | 35.0% |
| ! | TTATGAGTTGGACCGAAATA+TGG | + | chr5.2:82704250-82704269 | MS.gene57886:intron | 35.0% |
| ! | TTATTAAGGCTGATTCTCCT+TGG | + | chr5.2:82702299-82702318 | MS.gene57886:CDS | 35.0% |
| !! | ACTTCTAAAGTCACACAGAT+AGG | - | chr5.2:82702562-82702581 | None:intergenic | 35.0% |
| !! | ATCGATTTTGATGTGCATGT+TGG | + | chr5.2:82703289-82703308 | MS.gene57886:CDS | 35.0% |
| !!! | ACACTGATTTTTGAGTTGCA+TGG | + | chr5.2:82703412-82703431 | MS.gene57886:intron | 35.0% |
| AGCTACGATGATTGCAGATT+GGG | - | chr5.2:82703957-82703976 | None:intergenic | 40.0% | |
| AGTAGGGAGAGTAGATCAAA+TGG | + | chr5.2:82704151-82704170 | MS.gene57886:intron | 40.0% | |
| CACAACCATGTGACAATTTC+AGG | + | chr5.2:82703138-82703157 | MS.gene57886:intron | 40.0% | |
| CTTCCACAGTTCATTCATCT+AGG | - | chr5.2:82704497-82704516 | None:intergenic | 40.0% | |
| GCTAGAGCAGATAGCAAAAT+TGG | + | chr5.2:82703498-82703517 | MS.gene57886:CDS | 40.0% | |
| GGACATCTAGATTCTGTAGT+AGG | + | chr5.2:82704134-82704153 | MS.gene57886:intron | 40.0% | |
| TACGGAATGCAGTGAATGAT+GGG | + | chr5.2:82704606-82704625 | MS.gene57886:intron | 40.0% | |
| TAGCTACGATGATTGCAGAT+TGG | - | chr5.2:82703958-82703977 | None:intergenic | 40.0% | |
| TCTTAACCGATCAACTCGTT+TGG | - | chr5.2:82703996-82704015 | None:intergenic | 40.0% | |
| TTGCTATCTGCTCTAGCAAA+GGG | - | chr5.2:82703495-82703514 | None:intergenic | 40.0% | |
| TTTGAGCAACATGCCAAAGA+CGG | + | chr5.2:82703325-82703344 | MS.gene57886:CDS | 40.0% | |
| ! | CTTGTCTAGAACATAGTCCT+GGG | + | chr5.2:82702785-82702804 | MS.gene57886:intron | 40.0% |
| ! | TAGGGAGTGTGTGTGTATTA+GGG | + | chr5.2:82702845-82702864 | MS.gene57886:intron | 40.0% |
| ! | TCTTGAATTTGTTCACCAGC+CGG | - | chr5.2:82703172-82703191 | None:intergenic | 40.0% |
| ! | TCTTGTCTAGAACATAGTCC+TGG | + | chr5.2:82702784-82702803 | MS.gene57886:intron | 40.0% |
| ! | TGATGAAGGTGTAGATCTTG+TGG | + | chr5.2:82702330-82702349 | MS.gene57886:CDS | 40.0% |
| ! | TTAGGGAGTGTGTGTGTATT+AGG | + | chr5.2:82702844-82702863 | MS.gene57886:intron | 40.0% |
| ! | TTGTCTAGAACATAGTCCTG+GGG | + | chr5.2:82702786-82702805 | MS.gene57886:intron | 40.0% |
| ! | TTTGCTATCTGCTCTAGCAA+AGG | - | chr5.2:82703496-82703515 | None:intergenic | 40.0% |
| !! | GAATTTGTTGCTCACAAACC+AGG | + | chr5.2:82703220-82703239 | MS.gene57886:CDS | 40.0% |
| !! | TTTGAATCAGCAGCACTGAT+TGG | + | chr5.2:82704659-82704678 | MS.gene57886:CDS | 40.0% |
| AATACCTATTGCTTGGCGGT+CGG | - | chr5.2:82703575-82703594 | None:intergenic | 45.0% | |
| ACGCTTGTTTGAGCGAAAGT+TGG | + | chr5.2:82704712-82704731 | MS.gene57886:CDS | 45.0% | |
| AGGGAGAGTAGATCAAATGG+AGG | + | chr5.2:82704154-82704173 | MS.gene57886:intron | 45.0% | |
| CCTTCATCACCATAATGCCA+AGG | - | chr5.2:82702319-82702338 | None:intergenic | 45.0% | |
| CGCTTGTTTGAGCGAAAGTT+GGG | + | chr5.2:82704713-82704732 | MS.gene57886:CDS | 45.0% | |
| GTACGGAATGCAGTGAATGA+TGG | + | chr5.2:82704605-82704624 | MS.gene57886:intron | 45.0% | |
| GTGCTTTGTGTACTGCTCTT+CGG | - | chr5.2:82704637-82704656 | None:intergenic | 45.0% | |
| ! | AAATAAGCGTAGTGGAGACG+AGG | + | chr5.2:82704063-82704082 | MS.gene57886:intron | 45.0% |
| ! | ACAATTTCAGGTAAAGGGGC+CGG | + | chr5.2:82703150-82703169 | MS.gene57886:intron | 45.0% |
| ! | CAAAGCCTTTTCCCACTACA+TGG | - | chr5.2:82704307-82704326 | None:intergenic | 45.0% |
| ! | CATGTAGTGGGAAAAGGCTT+TGG | + | chr5.2:82704305-82704324 | MS.gene57886:intron | 45.0% |
| ! | CCTTGGCATTATGGTGATGA+AGG | + | chr5.2:82702316-82702335 | MS.gene57886:CDS | 45.0% |
| ! | GCTGATTCTCCTTGGCATTA+TGG | + | chr5.2:82702307-82702326 | MS.gene57886:CDS | 45.0% |
| ! | GGTGGTTTCCTAGGGTTTTA+GGG | + | chr5.2:82702827-82702846 | MS.gene57886:intron | 45.0% |
| !! | ACGACACCAAACGAGTTGAT+CGG | + | chr5.2:82703987-82704006 | MS.gene57886:intron | 45.0% |
| !! | AGAAGAGGCATTACCGTCTT+TGG | - | chr5.2:82703341-82703360 | None:intergenic | 45.0% |
| !!! | ATTTATATTTCTAATTTTTA+AGG | - | chr5.2:82702957-82702976 | None:intergenic | 5.0% |
| ACAGTGGCATGGTTATGGAC+TGG | - | chr5.2:82702737-82702756 | None:intergenic | 50.0% | |
| AGGAAACCACCCTCTTACCA+GGG | - | chr5.2:82702818-82702837 | None:intergenic | 50.0% | |
| CACACACTCCCTAAAACCCT+AGG | - | chr5.2:82702838-82702857 | None:intergenic | 50.0% | |
| CGATGATTGCAGATTGGGAC+AGG | - | chr5.2:82703952-82703971 | None:intergenic | 50.0% | |
| GGTAAGAGGGTGGTTTCCTA+GGG | + | chr5.2:82702819-82702838 | MS.gene57886:intron | 50.0% | |
| TAGGAAACCACCCTCTTACC+AGG | - | chr5.2:82702819-82702838 | None:intergenic | 50.0% | |
| TGGTAAGAGGGTGGTTTCCT+AGG | + | chr5.2:82702818-82702837 | MS.gene57886:intron | 50.0% | |
| ! | GGGTGGTTTCCTAGGGTTTT+AGG | + | chr5.2:82702826-82702845 | MS.gene57886:intron | 50.0% |
| AGGATGTTGCGTTGGACGTG+TGG | + | chr5.2:82704083-82704102 | MS.gene57886:intron | 55.0% | |
| CAAACCGACCGCCAAGCAAT+AGG | + | chr5.2:82703568-82703587 | MS.gene57886:CDS | 55.0% | |
| GGAAACCACCCTCTTACCAG+GGG | - | chr5.2:82702817-82702836 | None:intergenic | 55.0% | |
| GGGTTCAACCCCTGGTAAGA+GGG | + | chr5.2:82702806-82702825 | MS.gene57886:intron | 55.0% | |
| TGGAGACGAGGATGTTGCGT+TGG | + | chr5.2:82704075-82704094 | MS.gene57886:intron | 55.0% | |
| TTCAACCCCTGGTAAGAGGG+TGG | + | chr5.2:82702809-82702828 | MS.gene57886:intron | 55.0% | |
| CTTACCAGGGGTTGAACCCC+AGG | - | chr5.2:82702805-82702824 | None:intergenic | 60.0% | |
| GGGGTTCAACCCCTGGTAAG+AGG | + | chr5.2:82702805-82702824 | MS.gene57886:intron | 60.0% | |
| TAGTCCTGGGGTTCAACCCC+TGG | + | chr5.2:82702798-82702817 | MS.gene57886:intron | 60.0% | |
| ! | TTTCAGGTAAAGGGGCCGGC+TGG | + | chr5.2:82703154-82703173 | MS.gene57886:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 82702139 | 82704751 | 82702139 | ID=MS.gene57886 |
| chr5.2 | mRNA | 82702139 | 82704751 | 82702139 | ID=MS.gene57886.t1;Parent=MS.gene57886 |
| chr5.2 | exon | 82702139 | 82702351 | 82702139 | ID=MS.gene57886.t1.exon1;Parent=MS.gene57886.t1 |
| chr5.2 | CDS | 82702139 | 82702351 | 82702139 | ID=cds.MS.gene57886.t1;Parent=MS.gene57886.t1 |
| chr5.2 | exon | 82703160 | 82703346 | 82703160 | ID=MS.gene57886.t1.exon2;Parent=MS.gene57886.t1 |
| chr5.2 | CDS | 82703160 | 82703346 | 82703160 | ID=cds.MS.gene57886.t1;Parent=MS.gene57886.t1 |
| chr5.2 | exon | 82703482 | 82703589 | 82703482 | ID=MS.gene57886.t1.exon3;Parent=MS.gene57886.t1 |
| chr5.2 | CDS | 82703482 | 82703589 | 82703482 | ID=cds.MS.gene57886.t1;Parent=MS.gene57886.t1 |
| chr5.2 | exon | 82704618 | 82704751 | 82704618 | ID=MS.gene57886.t1.exon4;Parent=MS.gene57886.t1 |
| chr5.2 | CDS | 82704618 | 82704751 | 82704618 | ID=cds.MS.gene57886.t1;Parent=MS.gene57886.t1 |
| Gene Sequence |
| Protein sequence |
