Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57968.t1 | XP_003610252.1 | 98.8 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 5.20E-86 | 327 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57968.t1 | Q54UB0 | 37.2 | 129 | 81 | 0 | 1 | 129 | 1 | 129 | 2.3e-18 | 93.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57968.t1 | G7JED5 | 98.8 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 3.8e-86 | 327.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050945 | MS.gene57968 | 0.836368 | 9.75E-57 | -1.69E-46 |
| MS.gene052072 | MS.gene57968 | 0.816134 | 6.47E-52 | -1.69E-46 |
| MS.gene054413 | MS.gene57968 | 0.831095 | 2.03E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57968.t1 | MTR_4g130180 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 3.70e-129 | 359 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57968.t1 | AT2G23940 | 78.035 | 173 | 38 | 0 | 1 | 173 | 1 | 173 | 1.31e-104 | 297 |
| MS.gene57968.t1 | AT2G23940 | 78.035 | 173 | 38 | 0 | 1 | 173 | 1 | 173 | 1.31e-104 | 297 |
| MS.gene57968.t1 | AT2G23940 | 78.035 | 173 | 38 | 0 | 1 | 173 | 1 | 173 | 1.31e-104 | 297 |
| MS.gene57968.t1 | AT4G30500 | 72.832 | 173 | 47 | 0 | 1 | 173 | 1 | 173 | 5.12e-95 | 273 |
Find 41 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCCTTTGGCTTGATTAA+AGG | 0.151562 | 8.4:-5013732 | MS.gene57968:CDS |
| AGGTTATTTATGTAATAATT+AGG | 0.232573 | 8.4:-5016614 | MS.gene57968:CDS |
| AATCCTTTGGCTTGATTAAA+GGG | 0.267308 | 8.4:-5013731 | MS.gene57968:CDS |
| CATCTTAGCAAGTTGTTGAT+AGG | 0.292767 | 8.4:+5016515 | None:intergenic |
| ATCTAAAAGCTCACCGTCTT+GGG | 0.363264 | 8.4:+5016476 | None:intergenic |
| TGACTACTGGTGGAGTTTGC+GGG | 0.388521 | 8.4:-5016440 | MS.gene57968:intron |
| CCATCATCTCTGGAAAGTTC+TGG | 0.397340 | 8.4:-5015640 | MS.gene57968:CDS |
| CAAGCCAATCCAATGCTTCC+AGG | 0.397383 | 8.4:+5016566 | None:intergenic |
| AGAGAAAGAGAGTACGTTGC+AGG | 0.407204 | 8.4:+5016776 | None:intergenic |
| TTTGGAGCATACCAATCCTT+TGG | 0.411793 | 8.4:-5013744 | MS.gene57968:CDS |
| ATTTGTCAGATACCAGCATT+TGG | 0.414553 | 8.4:-5013762 | MS.gene57968:intron |
| ATGAAAAGACCCGCAAGAAA+AGG | 0.419275 | 8.4:-5013588 | MS.gene57968:CDS |
| CTGGAAGCATTGGATTGGCT+TGG | 0.440533 | 8.4:-5016565 | MS.gene57968:CDS |
| CTAGCTTCACCTGGAAGCAT+TGG | 0.442403 | 8.4:-5016575 | MS.gene57968:CDS |
| TGTCTTGACAAACTTAGGTC+TGG | 0.445497 | 8.4:+5013543 | None:intergenic |
| AAGGGAAAAGATGGAGAAGA+AGG | 0.445950 | 8.4:-5013569 | MS.gene57968:CDS |
| CTATCAACAACTTGCTAAGA+TGG | 0.453545 | 8.4:-5016514 | MS.gene57968:CDS |
| CAAGTCGCTTCCATCATCTC+TGG | 0.460619 | 8.4:-5015650 | MS.gene57968:CDS |
| CATCTAAAAGCTCACCGTCT+TGG | 0.461805 | 8.4:+5016475 | None:intergenic |
| TGAAAAGACCCGCAAGAAAA+GGG | 0.467032 | 8.4:-5013587 | MS.gene57968:CDS |
| CCGCAAGAAAAGGGAAAAGA+TGG | 0.467797 | 8.4:-5013578 | MS.gene57968:CDS |
| GCTTCCAGGTGAAGCTAGAA+TGG | 0.471678 | 8.4:+5016580 | None:intergenic |
| CCAGAACTTTCCAGAGATGA+TGG | 0.477172 | 8.4:+5015640 | None:intergenic |
| ATCTTAGCAAGTTGTTGATA+GGG | 0.495823 | 8.4:+5016516 | None:intergenic |
| ATGACTACTGGTGGAGTTTG+CGG | 0.504873 | 8.4:-5016441 | MS.gene57968:CDS |
| GATTGGTATGCTCCAAATGC+TGG | 0.509174 | 8.4:+5013750 | None:intergenic |
| TTCACCTGGAAGCATTGGAT+TGG | 0.509382 | 8.4:-5016570 | MS.gene57968:CDS |
| GTTCGTGTCTTGACAAACTT+AGG | 0.524815 | 8.4:+5013538 | None:intergenic |
| TCACCGTCTTGGGTATAACT+AGG | 0.527034 | 8.4:+5016486 | None:intergenic |
| GTGAGAGAAATGGCGAATCA+AGG | 0.541390 | 8.4:-5016861 | None:intergenic |
| GATGATGATGTGGCGGAGCT+TGG | 0.543319 | 8.4:+5016800 | None:intergenic |
| TCTTCCATTCTAGCTTCACC+TGG | 0.546155 | 8.4:-5016584 | MS.gene57968:CDS |
| CTTTAATCAAGCCAAAGGAT+TGG | 0.550609 | 8.4:+5013733 | None:intergenic |
| AAACCCTTTAATCAAGCCAA+AGG | 0.572435 | 8.4:+5013728 | None:intergenic |
| GGGAAAATAATAAGCTAGAG+AGG | 0.590375 | 8.4:+5016536 | None:intergenic |
| GTTCTGGTACATATATCTTG+TGG | 0.618251 | 8.4:-5015624 | MS.gene57968:intron |
| CGTTGCAGGCGATGATGATG+TGG | 0.641934 | 8.4:+5016790 | None:intergenic |
| TCAAGGTGCTAAGAAACGCA+AGG | 0.648365 | 8.4:-5016844 | MS.gene57968:CDS |
| AAACCTAGTTATACCCAAGA+CGG | 0.654127 | 8.4:-5016489 | MS.gene57968:CDS |
| TGCAGGCGATGATGATGTGG+CGG | 0.680633 | 8.4:+5016793 | None:intergenic |
| GACCATACCTCTGAACCTTG+TGG | 0.690357 | 8.4:+5013702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTTATGAATTATATC+AGG | - | chr8.4:5015600-5015619 | MS.gene57968:intron | 10.0% |
| !! | TTCATAAATAAATAAATACT+AGG | + | chr8.4:5015593-5015612 | None:intergenic | 10.0% |
| !! | TTTATTTATGAATTATATCA+GGG | - | chr8.4:5015601-5015620 | MS.gene57968:intron | 10.0% |
| !! | AGGTTATTTATGTAATAATT+AGG | - | chr8.4:5013769-5013788 | MS.gene57968:intron | 15.0% |
| !! | TTATTTATGAATTATATCAG+GGG | - | chr8.4:5015602-5015621 | MS.gene57968:intron | 15.0% |
| !! | AGATTAAGTTAAAAAACCAT+TGG | + | chr8.4:5014315-5014334 | None:intergenic | 20.0% |
| !! | ATATTGGGACATATATAAAA+TGG | - | chr8.4:5016529-5016548 | MS.gene57968:CDS | 20.0% |
| !! | CTGTATCTTGATTTAAAAAA+TGG | - | chr8.4:5014276-5014295 | MS.gene57968:intron | 20.0% |
| !! | CTTCATTTATCTATATAGTT+TGG | + | chr8.4:5014601-5014620 | None:intergenic | 20.0% |
| !! | TCCATAAACTTATCTTAATA+GGG | - | chr8.4:5014205-5014224 | MS.gene57968:intron | 20.0% |
| !! | TTAAAGTTGCAATCAATATT+GGG | - | chr8.4:5016514-5016533 | MS.gene57968:CDS | 20.0% |
| !! | TTCAGAATATTATAACAACA+TGG | + | chr8.4:5015248-5015267 | None:intergenic | 20.0% |
| !!! | AAAGAGTATTTTTTTAGAGA+AGG | + | chr8.4:5015306-5015325 | None:intergenic | 20.0% |
| !!! | AAAGAGTATTTTTTTAGAGA+GGG | + | chr8.4:5015306-5015325 | None:intergenic | 20.0% |
| !!! | AAGTATTGTGTATATATTGT+AGG | - | chr8.4:5014484-5014503 | MS.gene57968:intron | 20.0% |
| !!! | TATACAAATCCTTTTCATTT+GGG | - | chr8.4:5015149-5015168 | MS.gene57968:intron | 20.0% |
| !!! | TTATACAAATCCTTTTCATT+TGG | - | chr8.4:5015148-5015167 | MS.gene57968:intron | 20.0% |
| ! | AACCTGTTCAATAATAAATC+AGG | + | chr8.4:5013754-5013773 | None:intergenic | 25.0% |
| ! | ACTTCAAATTTAATCCATGT+TGG | - | chr8.4:5015231-5015250 | MS.gene57968:intron | 25.0% |
| ! | CTCCATAAACTTATCTTAAT+AGG | - | chr8.4:5014204-5014223 | MS.gene57968:intron | 25.0% |
| ! | CTCTTGTAATGATTAACAAA+GGG | + | chr8.4:5016560-5016579 | None:intergenic | 25.0% |
| ! | GTTAAAGTTGCAATCAATAT+TGG | - | chr8.4:5016513-5016532 | MS.gene57968:CDS | 25.0% |
| ! | TACCTGATTTATTATTGAAC+AGG | - | chr8.4:5013749-5013768 | MS.gene57968:CDS | 25.0% |
| ! | TATAAGCTTATAGGTCTAAA+GGG | + | chr8.4:5014144-5014163 | None:intergenic | 25.0% |
| ! | TCCCTATTAAGATAAGTTTA+TGG | + | chr8.4:5014209-5014228 | None:intergenic | 25.0% |
| ! | TCTCTTGTAATGATTAACAA+AGG | + | chr8.4:5016561-5016580 | None:intergenic | 25.0% |
| ! | TTAGACCTATAAGCTTATAA+GGG | - | chr8.4:5014145-5014164 | MS.gene57968:intron | 25.0% |
| ! | TTATAAGCTTATAGGTCTAA+AGG | + | chr8.4:5014145-5014164 | None:intergenic | 25.0% |
| ! | TTCAGAATATTATACCAACA+TGG | + | chr8.4:5015653-5015672 | None:intergenic | 25.0% |
| ! | TTTAGACCTATAAGCTTATA+AGG | - | chr8.4:5014144-5014163 | MS.gene57968:intron | 25.0% |
| !! | AATAATAATTTGCCGTAAAG+AGG | - | chr8.4:5014993-5015012 | MS.gene57968:intron | 25.0% |
| !! | ATACAAATCCTTTTCATTTG+GGG | - | chr8.4:5015150-5015169 | MS.gene57968:intron | 25.0% |
| !! | TCTGACTATGAAAAAGTTTT+AGG | + | chr8.4:5014542-5014561 | None:intergenic | 25.0% |
| !!! | GAAAGAGTATTTTTTTAGAG+AGG | + | chr8.4:5015307-5015326 | None:intergenic | 25.0% |
| !!! | GCTTTTTCATTAAGCTTATA+AGG | - | chr8.4:5014167-5014186 | MS.gene57968:intron | 25.0% |
| AAAAGCCCTTATAAGCTTAT+AGG | + | chr8.4:5014153-5014172 | None:intergenic | 30.0% | |
| AAGAAATAGAGGAATTTGAG+AGG | - | chr8.4:5015095-5015114 | MS.gene57968:intron | 30.0% | |
| AATTTCAAATCACCTTGCTA+GGG | - | chr8.4:5013642-5013661 | MS.gene57968:intron | 30.0% | |
| ACAAAGATATGTCATCTACA+AGG | - | chr8.4:5014928-5014947 | MS.gene57968:intron | 30.0% | |
| AGCAAATCTAATGAACCTAT+AGG | + | chr8.4:5015413-5015432 | None:intergenic | 30.0% | |
| ATCTTAGCAAGTTGTTGATA+GGG | + | chr8.4:5013870-5013889 | None:intergenic | 30.0% | |
| GATAATTCTTCACTTACTCT+TGG | - | chr8.4:5014660-5014679 | MS.gene57968:intron | 30.0% | |
| TATCTGACAAATGTCATGAA+GGG | + | chr8.4:5016613-5016632 | None:intergenic | 30.0% | |
| TCCTAATTAACCTTAATGGT+TGG | - | chr8.4:5014797-5014816 | MS.gene57968:intron | 30.0% | |
| TTTGTGAATAACATGGTACT+CGG | - | chr8.4:5014359-5014378 | MS.gene57968:intron | 30.0% | |
| ! | AAATAGAGGACTTTGGAAAA+AGG | - | chr8.4:5015058-5015077 | MS.gene57968:intron | 30.0% |
| ! | AATAGAGGACTTTGGAAAAA+GGG | - | chr8.4:5015059-5015078 | MS.gene57968:intron | 30.0% |
| ! | AGCTTATAAGGACTTTTTGA+TGG | - | chr8.4:5014179-5014198 | MS.gene57968:intron | 30.0% |
| ! | AGTTTGAAGCTAATCCAAAT+TGG | - | chr8.4:5014239-5014258 | MS.gene57968:intron | 30.0% |
| ! | ATCTTCTGTAGTTTTTCTGT+CGG | - | chr8.4:5014331-5014350 | MS.gene57968:intron | 30.0% |
| ! | CTTGGTAAATTTTCACTTTC+AGG | - | chr8.4:5016709-5016728 | MS.gene57968:intron | 30.0% |
| ! | GCTTATAAGGACTTTTTGAT+GGG | - | chr8.4:5014180-5014199 | MS.gene57968:intron | 30.0% |
| ! | GTTTGAAGCTAATCCAAATT+GGG | - | chr8.4:5014240-5014259 | MS.gene57968:intron | 30.0% |
| ! | TAATCCAAATTGGGTCTTTT+GGG | - | chr8.4:5014249-5014268 | MS.gene57968:intron | 30.0% |
| ! | TACAAATCCTTTTCATTTGG+GGG | - | chr8.4:5015151-5015170 | MS.gene57968:intron | 30.0% |
| ! | TACACAATACTTTTGCATGA+TGG | + | chr8.4:5014476-5014495 | None:intergenic | 30.0% |
| ! | TGCATTTTGTGATTAGGAAT+CGG | - | chr8.4:5016766-5016785 | MS.gene57968:intron | 30.0% |
| ! | TGTGTATGCATTTTGTGATT+AGG | - | chr8.4:5016760-5016779 | MS.gene57968:intron | 30.0% |
| !! | AATCCTTTGGCTTGATTAAA+GGG | - | chr8.4:5016652-5016671 | MS.gene57968:intron | 30.0% |
| !! | TGGATTAGCTTCAAACTTAT+AGG | + | chr8.4:5014236-5014255 | None:intergenic | 30.0% |
| !!! | GTGGTTTACTTTTAGAATGT+AGG | - | chr8.4:5014838-5014857 | MS.gene57968:intron | 30.0% |
| !!! | TATTGGAGGAGGATTTTTTA+GGG | - | chr8.4:5015187-5015206 | MS.gene57968:intron | 30.0% |
| AAAAACCAGAAGAGAAGACA+AGG | + | chr8.4:5013979-5013998 | None:intergenic | 35.0% | |
| AAACCCTTTAATCAAGCCAA+AGG | + | chr8.4:5016658-5016677 | None:intergenic | 35.0% | |
| AAACCTAGTTATACCCAAGA+CGG | - | chr8.4:5013894-5013913 | MS.gene57968:intron | 35.0% | |
| AAGCAACAAACTTGAAGGAA+AGG | - | chr8.4:5015485-5015504 | MS.gene57968:intron | 35.0% | |
| AAGGTTAATTAGGAGCAGAT+TGG | + | chr8.4:5014791-5014810 | None:intergenic | 35.0% | |
| AGCAACAAACTTGAAGGAAA+GGG | - | chr8.4:5015486-5015505 | MS.gene57968:intron | 35.0% | |
| AGTTACTATGAACCTTTCTG+TGG | + | chr8.4:5016735-5016754 | None:intergenic | 35.0% | |
| ATTTGTCAGATACCAGCATT+TGG | - | chr8.4:5016621-5016640 | MS.gene57968:intron | 35.0% | |
| CAATTTCAAATCACCTTGCT+AGG | - | chr8.4:5013641-5013660 | MS.gene57968:intron | 35.0% | |
| CAGATCTTCATAAGCACTTA+TGG | - | chr8.4:5014002-5014021 | MS.gene57968:intron | 35.0% | |
| CATCTTAGCAAGTTGTTGAT+AGG | + | chr8.4:5013871-5013890 | None:intergenic | 35.0% | |
| CCATAAAGCAACAAACTTGA+AGG | - | chr8.4:5015480-5015499 | MS.gene57968:intron | 35.0% | |
| CCTAGTGACTAATCTCAAAA+TGG | - | chr8.4:5015567-5015586 | MS.gene57968:intron | 35.0% | |
| CTGCTCCTAATTAACCTTAA+TGG | - | chr8.4:5014793-5014812 | MS.gene57968:intron | 35.0% | |
| CTTTAATCAAGCCAAAGGAT+TGG | + | chr8.4:5016653-5016672 | None:intergenic | 35.0% | |
| GAACTCGAAAATTGTATTGG+AGG | - | chr8.4:5015173-5015192 | MS.gene57968:intron | 35.0% | |
| GATACCACTTCAAAGAATGT+AGG | - | chr8.4:5014898-5014917 | MS.gene57968:intron | 35.0% | |
| GATATGTCATCTACAAGGTT+TGG | - | chr8.4:5014933-5014952 | MS.gene57968:intron | 35.0% | |
| GCCAACCATTAAGGTTAATT+AGG | + | chr8.4:5014801-5014820 | None:intergenic | 35.0% | |
| GGGAAAATAATAAGCTAGAG+AGG | + | chr8.4:5013850-5013869 | None:intergenic | 35.0% | |
| GTAATCTGTACAATCAACTG+TGG | - | chr8.4:5016439-5016458 | MS.gene57968:intron | 35.0% | |
| GTATCTGACAAATGTCATGA+AGG | + | chr8.4:5016614-5016633 | None:intergenic | 35.0% | |
| GTCTAAAGGGATGAGTTAAA+CGG | + | chr8.4:5014131-5014150 | None:intergenic | 35.0% | |
| GTTCTGGTACATATATCTTG+TGG | - | chr8.4:5014759-5014778 | MS.gene57968:intron | 35.0% | |
| TCTAAAGGGATGAGTTAAAC+GGG | + | chr8.4:5014130-5014149 | None:intergenic | 35.0% | |
| TTTGCTTATTAGTGCATGTC+TGG | - | chr8.4:5015427-5015446 | MS.gene57968:intron | 35.0% | |
| ! | ATTAAAGGGTTTTTGCCACA+AGG | - | chr8.4:5016666-5016685 | MS.gene57968:intron | 35.0% |
| ! | CACATGCATCGATAATTTCA+TGG | + | chr8.4:5013676-5013695 | None:intergenic | 35.0% |
| ! | CTAATCCAAATTGGGTCTTT+TGG | - | chr8.4:5014248-5014267 | MS.gene57968:intron | 35.0% |
| ! | GCATCGATAATTTCATGGAT+AGG | + | chr8.4:5013671-5013690 | None:intergenic | 35.0% |
| ! | TAAGCCTACATTCTTTGAAG+TGG | + | chr8.4:5014905-5014924 | None:intergenic | 35.0% |
| ! | TCTTCTGTAGTTTTTCTGTC+GGG | - | chr8.4:5014332-5014351 | MS.gene57968:intron | 35.0% |
| !! | ATGAACCTATAGGCTTTGTT+TGG | + | chr8.4:5015403-5015422 | None:intergenic | 35.0% |
| !! | CAATCCTTTGGCTTGATTAA+AGG | - | chr8.4:5016651-5016670 | MS.gene57968:intron | 35.0% |
| !! | CCTTCAAGTTTGTTGCTTTA+TGG | + | chr8.4:5015483-5015502 | None:intergenic | 35.0% |
| !! | CTATCAACAACTTGCTAAGA+TGG | - | chr8.4:5013869-5013888 | MS.gene57968:intron | 35.0% |
| !! | GGGGTATTTTGTGAATAACA+TGG | - | chr8.4:5014352-5014371 | MS.gene57968:intron | 35.0% |
| !! | TGAACCTATAGGCTTTGTTT+GGG | + | chr8.4:5015402-5015421 | None:intergenic | 35.0% |
| !! | TTCTTTGAAGTGGTATCAGT+CGG | + | chr8.4:5014895-5014914 | None:intergenic | 35.0% |
| !!! | AAAAAGTTTTAGGCTCATCC+CGG | + | chr8.4:5014532-5014551 | None:intergenic | 35.0% |
| !!! | AGGAGGATTTTTTAGGGTTT+TGG | - | chr8.4:5015193-5015212 | MS.gene57968:intron | 35.0% |
| !!! | AGGATTTTTTAGGGTTTTGG+GGG | - | chr8.4:5015196-5015215 | MS.gene57968:intron | 35.0% |
| !!! | ATTTTGAGATTAGTCACTGG+GGG | + | chr8.4:5016378-5016397 | None:intergenic | 35.0% |
| !!! | CATTTTGAGATTAGTCACTG+GGG | + | chr8.4:5016379-5016398 | None:intergenic | 35.0% |
| !!! | CCATTTTGAGATTAGTCACT+AGG | + | chr8.4:5015570-5015589 | None:intergenic | 35.0% |
| !!! | CCATTTTGAGATTAGTCACT+GGG | + | chr8.4:5015570-5015589 | None:intergenic | 35.0% |
| !!! | GAGGATTTTTTAGGGTTTTG+GGG | - | chr8.4:5015195-5015214 | MS.gene57968:intron | 35.0% |
| !!! | GGAGGATTTTTTAGGGTTTT+GGG | - | chr8.4:5015194-5015213 | MS.gene57968:intron | 35.0% |
| !!! | GTATTGGAGGAGGATTTTTT+AGG | - | chr8.4:5015186-5015205 | MS.gene57968:intron | 35.0% |
| AAACTTGAAGGAAAGGGGAT+TGG | - | chr8.4:5015492-5015511 | MS.gene57968:intron | 40.0% | |
| AACTCCCAAACAAAGCCTAT+AGG | - | chr8.4:5015395-5015414 | MS.gene57968:intron | 40.0% | |
| AAGGGAAAAGATGGAGAAGA+AGG | - | chr8.4:5016814-5016833 | MS.gene57968:CDS | 40.0% | |
| ATAGAGGAATTTGAGAGGTG+AGG | - | chr8.4:5015100-5015119 | MS.gene57968:intron | 40.0% | |
| ATATTGTAGGCTGTAGCCTA+TGG | - | chr8.4:5014497-5014516 | MS.gene57968:intron | 40.0% | |
| ATCTAAAAGCTCACCGTCTT+GGG | + | chr8.4:5013910-5013929 | None:intergenic | 40.0% | |
| ATGAAAAGACCCGCAAGAAA+AGG | - | chr8.4:5016795-5016814 | MS.gene57968:CDS | 40.0% | |
| CCCAGTGACTAATCTCAAAA+TGG | - | chr8.4:5016377-5016396 | MS.gene57968:intron | 40.0% | |
| CCCTAGATAACTCCTCTTTA+CGG | + | chr8.4:5015008-5015027 | None:intergenic | 40.0% | |
| CCGTAAAGAGGAGTTATCTA+GGG | - | chr8.4:5015005-5015024 | MS.gene57968:intron | 40.0% | |
| CTCGAAAATTGTATTGGAGG+AGG | - | chr8.4:5015176-5015195 | MS.gene57968:intron | 40.0% | |
| CTGTACAATCAACTGTGGTT+GGG | - | chr8.4:5016444-5016463 | MS.gene57968:CDS | 40.0% | |
| GCAACAAACTTGAAGGAAAG+GGG | - | chr8.4:5015487-5015506 | MS.gene57968:intron | 40.0% | |
| GCTAATAGAGCCAACCATTA+AGG | + | chr8.4:5014810-5014829 | None:intergenic | 40.0% | |
| GCTCTATTAGCACAAAACTG+TGG | - | chr8.4:5014819-5014838 | MS.gene57968:intron | 40.0% | |
| GGGGAACTCGAAAATTGTAT+TGG | - | chr8.4:5015170-5015189 | MS.gene57968:intron | 40.0% | |
| GTGGAAGAAATAGAGGACTT+TGG | - | chr8.4:5015051-5015070 | MS.gene57968:intron | 40.0% | |
| GTTCGTGTCTTGACAAACTT+AGG | + | chr8.4:5016848-5016867 | None:intergenic | 40.0% | |
| TAGAGGAATTTGAGAGGTGA+GGG | - | chr8.4:5015101-5015120 | MS.gene57968:intron | 40.0% | |
| TCATAGTCAGATAATCCCGT+AGG | - | chr8.4:5014551-5014570 | MS.gene57968:intron | 40.0% | |
| TCTGTACAATCAACTGTGGT+TGG | - | chr8.4:5016443-5016462 | MS.gene57968:CDS | 40.0% | |
| TGAAAAGACCCGCAAGAAAA+GGG | - | chr8.4:5016796-5016815 | MS.gene57968:CDS | 40.0% | |
| TGATCCCAAAAGACCCAATT+TGG | + | chr8.4:5014256-5014275 | None:intergenic | 40.0% | |
| TGGTAGTTTATCTGTGCCAA+TGG | - | chr8.4:5014296-5014315 | MS.gene57968:intron | 40.0% | |
| TGTCTTGACAAACTTAGGTC+TGG | + | chr8.4:5016843-5016862 | None:intergenic | 40.0% | |
| ! | CATCTTTTCCCTTTTCTTGC+GGG | + | chr8.4:5016807-5016826 | None:intergenic | 40.0% |
| ! | CCATCTTTTCCCTTTTCTTG+CGG | + | chr8.4:5016808-5016827 | None:intergenic | 40.0% |
| ! | CTTCTGTAGTTTTTCTGTCG+GGG | - | chr8.4:5014333-5014352 | MS.gene57968:intron | 40.0% |
| ! | TAGCCTATGGAATTTTCTCC+CGG | - | chr8.4:5014510-5014529 | MS.gene57968:intron | 40.0% |
| ! | TATCTAGGGCTCTGGTAAAA+AGG | - | chr8.4:5015019-5015038 | MS.gene57968:intron | 40.0% |
| ! | TTTGGAGCATACCAATCCTT+TGG | - | chr8.4:5016639-5016658 | MS.gene57968:intron | 40.0% |
| !! | ATAGGCTTTGTTTGGGAGTT+TGG | + | chr8.4:5015395-5015414 | None:intergenic | 40.0% |
| !! | GGTTTTGATATGACTACTGG+TGG | - | chr8.4:5013933-5013952 | MS.gene57968:intron | 40.0% |
| !!! | AAAAGTTTTAGGCTCATCCC+GGG | + | chr8.4:5014531-5014550 | None:intergenic | 40.0% |
| !!! | GCCATTTTGAGATTAGTCAC+TGG | + | chr8.4:5015571-5015590 | None:intergenic | 40.0% |
| !!! | GGATTTTTTAGGGTTTTGGG+GGG | - | chr8.4:5015197-5015216 | MS.gene57968:intron | 40.0% |
| !!! | GGTGGTTTTGATATGACTAC+TGG | - | chr8.4:5013930-5013949 | MS.gene57968:intron | 40.0% |
| ATCCCGGGAGAAAATTCCAT+AGG | + | chr8.4:5014516-5014535 | None:intergenic | 45.0% | |
| ATGACTACTGGTGGAGTTTG+CGG | - | chr8.4:5013942-5013961 | MS.gene57968:intron | 45.0% | |
| ATGGATAGGAAACCCTAGCA+AGG | + | chr8.4:5013657-5013676 | None:intergenic | 45.0% | |
| CAGATAATCCCGTAGGTCTA+GGG | - | chr8.4:5014558-5014577 | MS.gene57968:intron | 45.0% | |
| CATCTAAAAGCTCACCGTCT+TGG | + | chr8.4:5013911-5013930 | None:intergenic | 45.0% | |
| CCAGAACTTTCCAGAGATGA+TGG | + | chr8.4:5014746-5014765 | None:intergenic | 45.0% | |
| CCGCAAGAAAAGGGAAAAGA+TGG | - | chr8.4:5016805-5016824 | MS.gene57968:CDS | 45.0% | |
| GATTGGTATGCTCCAAATGC+TGG | + | chr8.4:5016636-5016655 | None:intergenic | 45.0% | |
| GCCGTAAAGAGGAGTTATCT+AGG | - | chr8.4:5015004-5015023 | MS.gene57968:intron | 45.0% | |
| GGAGCAAGTGGAAGAAATAG+AGG | - | chr8.4:5015044-5015063 | MS.gene57968:intron | 45.0% | |
| GGTAAAAAGGAAGGAGCAAG+TGG | - | chr8.4:5015032-5015051 | MS.gene57968:intron | 45.0% | |
| TCACCGTCTTGGGTATAACT+AGG | + | chr8.4:5013900-5013919 | None:intergenic | 45.0% | |
| TCAGATAATCCCGTAGGTCT+AGG | - | chr8.4:5014557-5014576 | MS.gene57968:intron | 45.0% | |
| TCGAGTTCCCCCAAATGAAA+AGG | + | chr8.4:5015161-5015180 | None:intergenic | 45.0% | |
| TGCAACATCCTTCACTGACA+CGG | - | chr8.4:5016582-5016601 | MS.gene57968:CDS | 45.0% | |
| TTCACTTTCAGGCCACAGAA+AGG | - | chr8.4:5016720-5016739 | MS.gene57968:intron | 45.0% | |
| TTTGGGGGGTGGGAAATATA+GGG | + | chr8.4:5015357-5015376 | None:intergenic | 45.0% | |
| ! | AGAGAAAGAGAGTACGTTGC+AGG | + | chr8.4:5013610-5013629 | None:intergenic | 45.0% |
| ! | AGCCTATGGAATTTTCTCCC+GGG | - | chr8.4:5014511-5014530 | MS.gene57968:intron | 45.0% |
| ! | CAAGACGGTGAGCTTTTAGA+TGG | - | chr8.4:5013909-5013928 | MS.gene57968:intron | 45.0% |
| ! | CAGAGGTATGGTCAACATCT+TGG | - | chr8.4:5016691-5016710 | MS.gene57968:intron | 45.0% |
| ! | CCATCATCTCTGGAAAGTTC+TGG | - | chr8.4:5014743-5014762 | MS.gene57968:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr8.4:5015390-5015409 | None:intergenic | 45.0% |
| ! | GAGGACTTTGGAAAAAGGGA+AGG | - | chr8.4:5015063-5015082 | MS.gene57968:intron | 45.0% |
| ! | GTTTTTGCCACAAGGTTCAG+AGG | - | chr8.4:5016674-5016693 | MS.gene57968:intron | 45.0% |
| ! | TAGGGCTCTGGTAAAAAGGA+AGG | - | chr8.4:5015023-5015042 | MS.gene57968:intron | 45.0% |
| ! | TCAAGGTGCTAAGAAACGCA+AGG | - | chr8.4:5013539-5013558 | MS.gene57968:CDS | 45.0% |
| !! | AAGAGTGTTCCCTAGACCTA+CGG | + | chr8.4:5014570-5014589 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr8.4:5015391-5015410 | None:intergenic | 45.0% |
| !! | TCTTCCATTCTAGCTTCACC+TGG | - | chr8.4:5013799-5013818 | MS.gene57968:intron | 45.0% |
| !! | TTCACCTGGAAGCATTGGAT+TGG | - | chr8.4:5013813-5013832 | MS.gene57968:intron | 45.0% |
| AGGGGATTGGATCGCTAAAC+AGG | - | chr8.4:5015505-5015524 | MS.gene57968:intron | 50.0% | |
| CAAGCCAATCCAATGCTTCC+AGG | + | chr8.4:5013820-5013839 | None:intergenic | 50.0% | |
| CAAGTCGCTTCCATCATCTC+TGG | - | chr8.4:5014733-5014752 | MS.gene57968:intron | 50.0% | |
| CTCTGCCTTGTCTTCTCTTC+TGG | - | chr8.4:5013971-5013990 | MS.gene57968:intron | 50.0% | |
| GACCATACCTCTGAACCTTG+TGG | + | chr8.4:5016684-5016703 | None:intergenic | 50.0% | |
| GCTTCCAGGTGAAGCTAGAA+TGG | + | chr8.4:5013806-5013825 | None:intergenic | 50.0% | |
| GGAAAAAGGGAAGGAGCAAG+TGG | - | chr8.4:5015072-5015091 | MS.gene57968:intron | 50.0% | |
| GGATTGGATCGCTAAACAGG+AGG | - | chr8.4:5015508-5015527 | MS.gene57968:intron | 50.0% | |
| TGACTACTGGTGGAGTTTGC+GGG | - | chr8.4:5013943-5013962 | MS.gene57968:intron | 50.0% | |
| TGCCACAAGGTTCAGAGGTA+TGG | - | chr8.4:5016679-5016698 | MS.gene57968:intron | 50.0% | |
| TTGGATCGCTAAACAGGAGG+AGG | - | chr8.4:5015511-5015530 | MS.gene57968:intron | 50.0% | |
| TTTGAGAGGTGAGGGCTTCA+CGG | - | chr8.4:5015109-5015128 | MS.gene57968:intron | 50.0% | |
| ! | AGAGGAGTTATCTAGGGCTC+TGG | - | chr8.4:5015011-5015030 | MS.gene57968:intron | 50.0% |
| ! | AGAGTGTTCCCTAGACCTAC+GGG | + | chr8.4:5014569-5014588 | None:intergenic | 50.0% |
| ! | CTAGCTTCACCTGGAAGCAT+TGG | - | chr8.4:5013808-5013827 | MS.gene57968:intron | 50.0% |
| ! | CTTTGGGGGGTGGGAAATAT+AGG | + | chr8.4:5015358-5015377 | None:intergenic | 50.0% |
| ! | GACGGTGAGCTTTTAGATGG+TGG | - | chr8.4:5013912-5013931 | MS.gene57968:intron | 50.0% |
| !! | CTGGAAGCATTGGATTGGCT+TGG | - | chr8.4:5013818-5013837 | MS.gene57968:intron | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr8.4:5015392-5015411 | None:intergenic | 50.0% |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr8.4:5015387-5015406 | None:intergenic | 55.0% | |
| TTGAGAGGTGAGGGCTTCAC+GGG | - | chr8.4:5015110-5015129 | MS.gene57968:intron | 55.0% | |
| ! | CGTTGCAGGCGATGATGATG+TGG | + | chr8.4:5013596-5013615 | None:intergenic | 55.0% |
| ! | GATGATGATGTGGCGGAGCT+TGG | + | chr8.4:5013586-5013605 | None:intergenic | 55.0% |
| ! | TGCAGGCGATGATGATGTGG+CGG | + | chr8.4:5013593-5013612 | None:intergenic | 55.0% |
| GGAGTTTGGAGGGGAGGAGA+GGG | + | chr8.4:5015381-5015400 | None:intergenic | 60.0% | |
| GGGAGCAACCGTGTCAGTGA+AGG | + | chr8.4:5016593-5016612 | None:intergenic | 60.0% | |
| TGAGAGGTGAGGGCTTCACG+GGG | - | chr8.4:5015111-5015130 | MS.gene57968:intron | 60.0% | |
| GAGGGGAGGAGAGGGCTTTG+GGG | + | chr8.4:5015373-5015392 | None:intergenic | 65.0% | |
| GGAGGGGAGGAGAGGGCTTT+GGG | + | chr8.4:5015374-5015393 | None:intergenic | 65.0% | |
| GGGAGTTTGGAGGGGAGGAG+AGG | + | chr8.4:5015382-5015401 | None:intergenic | 65.0% | |
| TGGAGGGGAGGAGAGGGCTT+TGG | + | chr8.4:5015375-5015394 | None:intergenic | 65.0% | |
| ! | AGGGGAGGAGAGGGCTTTGG+GGG | + | chr8.4:5015372-5015391 | None:intergenic | 65.0% |
| !! | AGGAGAGGGCTTTGGGGGGT+GGG | + | chr8.4:5015367-5015386 | None:intergenic | 65.0% |
| !! | GAGGAGAGGGCTTTGGGGGG+TGG | + | chr8.4:5015368-5015387 | None:intergenic | 70.0% |
| !! | GGGGAGGAGAGGGCTTTGGG+GGG | + | chr8.4:5015371-5015390 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 5013531 | 5016874 | 5013531 | ID=MS.gene57968 |
| chr8.4 | mRNA | 5013531 | 5016874 | 5013531 | ID=MS.gene57968.t1;Parent=MS.gene57968 |
| chr8.4 | exon | 5016791 | 5016874 | 5016791 | ID=MS.gene57968.t1.exon1;Parent=MS.gene57968.t1 |
| chr8.4 | CDS | 5016791 | 5016874 | 5016791 | ID=cds.MS.gene57968.t1;Parent=MS.gene57968.t1 |
| chr8.4 | exon | 5016441 | 5016634 | 5016441 | ID=MS.gene57968.t1.exon2;Parent=MS.gene57968.t1 |
| chr8.4 | CDS | 5016441 | 5016634 | 5016441 | ID=cds.MS.gene57968.t1;Parent=MS.gene57968.t1 |
| chr8.4 | exon | 5015625 | 5015709 | 5015625 | ID=MS.gene57968.t1.exon3;Parent=MS.gene57968.t1 |
| chr8.4 | CDS | 5015625 | 5015709 | 5015625 | ID=cds.MS.gene57968.t1;Parent=MS.gene57968.t1 |
| chr8.4 | exon | 5013710 | 5013775 | 5013710 | ID=MS.gene57968.t1.exon4;Parent=MS.gene57968.t1 |
| chr8.4 | CDS | 5013710 | 5013775 | 5013710 | ID=cds.MS.gene57968.t1;Parent=MS.gene57968.t1 |
| chr8.4 | exon | 5013531 | 5013623 | 5013531 | ID=MS.gene57968.t1.exon5;Parent=MS.gene57968.t1 |
| chr8.4 | CDS | 5013531 | 5013623 | 5013531 | ID=cds.MS.gene57968.t1;Parent=MS.gene57968.t1 |
| Gene Sequence |
| Protein sequence |
