Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57981.t1 | XP_015932969.1 | 81.2 | 138 | 14 | 1 | 6 | 131 | 501 | 638 | 3.90E-49 | 204.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57981.t1 | Q9U5L1 | 60.6 | 137 | 42 | 2 | 7 | 131 | 478 | 614 | 5.5e-36 | 151.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57981.t1 | A0A445EN23 | 81.2 | 138 | 14 | 1 | 6 | 131 | 501 | 638 | 2.8e-49 | 204.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054004 | MS.gene57981 | 0.809592 | 1.75E-50 | -1.69E-46 |
| MS.gene054005 | MS.gene57981 | 0.822573 | 2.20E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57981.t1 | MTR_4g130770 | 81.884 | 138 | 13 | 2 | 6 | 131 | 494 | 631 | 2.48e-67 | 214 |
| MS.gene57981.t1 | MTR_7g104890 | 36.522 | 115 | 68 | 3 | 7 | 118 | 236 | 348 | 2.03e-12 | 63.2 |
| MS.gene57981.t1 | MTR_7g104890 | 36.842 | 114 | 69 | 2 | 7 | 118 | 103 | 215 | 2.56e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57981.t1 | AT4G30600 | 78.261 | 138 | 18 | 2 | 6 | 131 | 497 | 634 | 7.91e-64 | 205 |
| MS.gene57981.t1 | AT4G30600 | 78.261 | 138 | 18 | 2 | 6 | 131 | 497 | 634 | 7.91e-64 | 205 |
| MS.gene57981.t1 | AT5G03940 | 36.842 | 114 | 69 | 2 | 7 | 118 | 246 | 358 | 6.47e-13 | 64.7 |
Find 33 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTTCATCCTTTCATTTA+AGG | 0.135782 | 8.4:+3466515 | None:intergenic |
| CTTTCAATGGTTTACATATC+TGG | 0.196127 | 8.4:-3466619 | MS.gene57981:CDS |
| CCTGACCTGGTCTTATTTGT+TGG | 0.326012 | 8.4:-3467224 | MS.gene57981:CDS |
| GAGTTTCTTGAGGTCGGTAT+AGG | 0.387081 | 8.4:+3466564 | None:intergenic |
| GGTGGGAGCTGCACTTTCAA+TGG | 0.401497 | 8.4:-3466632 | MS.gene57981:CDS |
| TTTGACAGTGCTCTCATCAA+TGG | 0.412182 | 8.4:+3467266 | None:intergenic |
| GTTGTGCAAAGAAGCAATTC+AGG | 0.428954 | 8.4:-3468037 | MS.gene57981:CDS |
| GTTCGACACTATTGATGATA+AGG | 0.450965 | 8.4:-3466988 | MS.gene57981:intron |
| TTGCTTCTTTGCACAACAGC+AGG | 0.457242 | 8.4:+3468043 | None:intergenic |
| GGAAGCTTCACGGAATGGTT+CGG | 0.463640 | 8.4:-3468016 | MS.gene57981:CDS |
| CCTACACCCAGATTGATTGA+TGG | 0.472241 | 8.4:-3467026 | MS.gene57981:intron |
| TGGAGCTCCAGTCATGTTTG+TGG | 0.474210 | 8.4:-3466599 | MS.gene57981:CDS |
| CCAACAAATAAGACCAGGTC+AGG | 0.474859 | 8.4:+3467224 | None:intergenic |
| ATTTGAGAAGGGTTATGAAA+AGG | 0.485018 | 8.4:-3468068 | None:intergenic |
| CTTATTTGTTGGAGAAGCAC+TGG | 0.493495 | 8.4:-3467213 | MS.gene57981:CDS |
| ATTACCTGCATACGACCAGC+TGG | 0.496181 | 8.4:+3467976 | None:intergenic |
| AGACCAGGTCAGGATTGTTA+AGG | 0.512658 | 8.4:+3467234 | None:intergenic |
| CCAGTCATGTTTGTGGGATG+CGG | 0.515363 | 8.4:-3466592 | MS.gene57981:CDS |
| CTACACCCAGATTGATTGAT+GGG | 0.521118 | 8.4:-3467025 | MS.gene57981:intron |
| GGAGCTCCAGTCATGTTTGT+GGG | 0.528002 | 8.4:-3466598 | MS.gene57981:CDS |
| GACGTTGAGTTTCTTGAGGT+CGG | 0.531116 | 8.4:+3466558 | None:intergenic |
| AAGCAATTCAGGAAGCTTCA+CGG | 0.533244 | 8.4:-3468026 | MS.gene57981:CDS |
| CGACCCAGCTGGTCGTATGC+AGG | 0.540146 | 8.4:-3467980 | MS.gene57981:intron |
| ATTCAGGAAGCTTCACGGAA+TGG | 0.540152 | 8.4:-3468021 | MS.gene57981:CDS |
| CCGCATCCCACAAACATGAC+TGG | 0.559796 | 8.4:+3466592 | None:intergenic |
| ACTTGACGTTGAGTTTCTTG+AGG | 0.584980 | 8.4:+3466554 | None:intergenic |
| CTACCTTAACAATCCTGACC+TGG | 0.587728 | 8.4:-3467237 | MS.gene57981:CDS |
| TTTGTTGGAGAAGCACTGGT+TGG | 0.591781 | 8.4:-3467209 | MS.gene57981:CDS |
| GTTGTGCTAGTCGACCCAGC+TGG | 0.596450 | 8.4:-3467991 | MS.gene57981:CDS |
| TTTAAGGAGCGTCTTCACAA+TGG | 0.598414 | 8.4:+3466531 | None:intergenic |
| CTTCTCCAACAAATAAGACC+AGG | 0.622372 | 8.4:+3467219 | None:intergenic |
| TCAGCTTTCAAAGTTCAACC+AGG | 0.642481 | 8.4:-3467172 | MS.gene57981:intron |
| TTACCTGCATACGACCAGCT+GGG | 0.657315 | 8.4:+3467977 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTTTATTGGTTTTTAT+GGG | - | chr8.4:3466649-3466668 | MS.gene57981:intron | 15.0% |
| !! | TAATCATTACCCATATTAAA+TGG | + | chr8.4:3467714-3467733 | None:intergenic | 20.0% |
| !! | TATTCTTGATGAACATTTAT+TGG | - | chr8.4:3467669-3467688 | MS.gene57981:intron | 20.0% |
| !! | TCAATTCCAATAAACATAAA+AGG | + | chr8.4:3467172-3467191 | None:intergenic | 20.0% |
| !! | TTTCGTTAGTCAATATAAAA+CGG | + | chr8.4:3466736-3466755 | None:intergenic | 20.0% |
| !!! | AAAGTTTATTGGTTTTTATG+GGG | - | chr8.4:3466650-3466669 | MS.gene57981:intron | 20.0% |
| !!! | AATGAACCTTTTATGTTTAT+TGG | - | chr8.4:3467163-3467182 | MS.gene57981:intron | 20.0% |
| !!! | CAAAAGTTTATTGGTTTTTA+TGG | - | chr8.4:3466648-3466667 | MS.gene57981:intron | 20.0% |
| !!! | TAATTATGTTTGATTTTGTC+AGG | - | chr8.4:3467929-3467948 | MS.gene57981:intron | 20.0% |
| !!! | TTTTATGTTTATTGGAATTG+AGG | - | chr8.4:3467171-3467190 | MS.gene57981:intron | 20.0% |
| ! | AACTAGCAAAGACAAAATAA+AGG | + | chr8.4:3467825-3467844 | None:intergenic | 25.0% |
| ! | AGTTTCTGCAACAAAATAAA+TGG | + | chr8.4:3467518-3467537 | None:intergenic | 25.0% |
| ! | ATATAAAACGGTATTAATCC+CGG | + | chr8.4:3466724-3466743 | None:intergenic | 25.0% |
| ! | GTTTCTGCAACAAAATAAAT+GGG | + | chr8.4:3467517-3467536 | None:intergenic | 25.0% |
| !! | AATACTATTGGTTATCTGTT+AGG | - | chr8.4:3466695-3466714 | MS.gene57981:intron | 25.0% |
| !!! | AAGTTTATTGGTTTTTATGG+GGG | - | chr8.4:3466651-3466670 | MS.gene57981:intron | 25.0% |
| !!! | ATTTATTTTGTTGCAGAAAC+TGG | - | chr8.4:3467517-3467536 | MS.gene57981:intron | 25.0% |
| !!! | GTTTTATATTGACTAACGAA+AGG | - | chr8.4:3466735-3466754 | MS.gene57981:intron | 25.0% |
| AAAGACAAAATAAAGGAAGG+GGG | + | chr8.4:3467818-3467837 | None:intergenic | 30.0% | |
| AGCAAAGACAAAATAAAGGA+AGG | + | chr8.4:3467821-3467840 | None:intergenic | 30.0% | |
| AGGAATAAGTGCATAAAGAT+TGG | + | chr8.4:3466900-3466919 | None:intergenic | 30.0% | |
| AGTAACTGTTTCATTCAGTT+AGG | + | chr8.4:3466836-3466855 | None:intergenic | 30.0% | |
| ATTAGAGGTTCCATTTCTTA+AGG | + | chr8.4:3466933-3466952 | None:intergenic | 30.0% | |
| CAAAGACAAAATAAAGGAAG+GGG | + | chr8.4:3467819-3467838 | None:intergenic | 30.0% | |
| CTTTCAATGGTTTACATATC+TGG | - | chr8.4:3467963-3467982 | MS.gene57981:intron | 30.0% | |
| GAATAAGTGCATAAAGATTG+GGG | + | chr8.4:3466898-3466917 | None:intergenic | 30.0% | |
| GCAAAGACAAAATAAAGGAA+GGG | + | chr8.4:3467820-3467839 | None:intergenic | 30.0% | |
| GCAACTTTGCAAGTAATTTA+TGG | - | chr8.4:3467633-3467652 | MS.gene57981:intron | 30.0% | |
| GGAAAATTGTCATAGTTGAA+TGG | - | chr8.4:3467192-3467211 | MS.gene57981:CDS | 30.0% | |
| GGAATAAGTGCATAAAGATT+GGG | + | chr8.4:3466899-3466918 | None:intergenic | 30.0% | |
| GTAATTTATGGCTATGCATT+TGG | - | chr8.4:3467645-3467664 | MS.gene57981:intron | 30.0% | |
| GTGTTGAAGCAAAAGTTTAT+TGG | - | chr8.4:3466639-3466658 | MS.gene57981:intron | 30.0% | |
| TAACACTGTTTCAGTTTCTA+GGG | - | chr8.4:3467113-3467132 | MS.gene57981:intron | 30.0% | |
| TACCAATGACTCAATACTAT+TGG | - | chr8.4:3466683-3466702 | MS.gene57981:intron | 30.0% | |
| TATAAAACGGTATTAATCCC+GGG | + | chr8.4:3466723-3466742 | None:intergenic | 30.0% | |
| TCTTGATGAACATTTATTGG+TGG | - | chr8.4:3467672-3467691 | MS.gene57981:intron | 30.0% | |
| TTAGAGGTTCCATTTCTTAA+GGG | + | chr8.4:3466932-3466951 | None:intergenic | 30.0% | |
| TTGAATAATTGAACCTAACC+TGG | + | chr8.4:3467431-3467450 | None:intergenic | 30.0% | |
| ! | AACCAATAGTATTGAGTCAT+TGG | + | chr8.4:3466688-3466707 | None:intergenic | 30.0% |
| ! | CTATTTCTTGCGAATGAAAT+TGG | + | chr8.4:3467876-3467895 | None:intergenic | 30.0% |
| ! | TTGTCATAGTTGAATGGTTT+TGG | - | chr8.4:3467198-3467217 | MS.gene57981:CDS | 30.0% |
| !! | CTAGAATGATGGATATTAAG+TGG | - | chr8.4:3466861-3466880 | MS.gene57981:intron | 30.0% |
| !! | GTTACTAACTTCTAGAATGA+TGG | - | chr8.4:3466850-3466869 | MS.gene57981:intron | 30.0% |
| !! | TATGTTTGATTTTGTCAGGT+GGG | - | chr8.4:3467933-3467952 | MS.gene57981:intron | 30.0% |
| !! | TTATGTTTGATTTTGTCAGG+TGG | - | chr8.4:3467932-3467951 | MS.gene57981:intron | 30.0% |
| AACAGAATCCCCTTAAGAAA+TGG | - | chr8.4:3466920-3466939 | MS.gene57981:intron | 35.0% | |
| AACTGTTTCATTCAGTTAGG+CGG | + | chr8.4:3466833-3466852 | None:intergenic | 35.0% | |
| AAGATCCCATCAATCAATCT+GGG | + | chr8.4:3467565-3467584 | None:intergenic | 35.0% | |
| ATTCATTCGATGCTTTCTTG+TGG | + | chr8.4:3467754-3467773 | None:intergenic | 35.0% | |
| CTAACACTGTTTCAGTTTCT+AGG | - | chr8.4:3467112-3467131 | MS.gene57981:intron | 35.0% | |
| GGAGACTGTCCATTTAATAT+GGG | - | chr8.4:3467702-3467721 | MS.gene57981:intron | 35.0% | |
| GGGTTCAATAACAGACTTAT+GGG | + | chr8.4:3467497-3467516 | None:intergenic | 35.0% | |
| TAGAGGTTCCATTTCTTAAG+GGG | + | chr8.4:3466931-3466950 | None:intergenic | 35.0% | |
| TGAGATGGAAACAAAATCAG+CGG | + | chr8.4:3467782-3467801 | None:intergenic | 35.0% | |
| TGGGTTCAATAACAGACTTA+TGG | + | chr8.4:3467498-3467517 | None:intergenic | 35.0% | |
| TTCATGGCCCTTTCATTATT+GGG | - | chr8.4:3467080-3467099 | MS.gene57981:intron | 35.0% | |
| TTTCAAAGTTCAACCAGGTT+AGG | - | chr8.4:3467415-3467434 | MS.gene57981:intron | 35.0% | |
| TTTCTTAAGGGGATTCTGTT+AGG | + | chr8.4:3466920-3466939 | None:intergenic | 35.0% | |
| ! | AGCTTTGTCCAACTACAATT+GGG | - | chr8.4:3467455-3467474 | MS.gene57981:intron | 35.0% |
| ! | ATGAACATTTATTGGTGGCT+AGG | - | chr8.4:3467677-3467696 | MS.gene57981:intron | 35.0% |
| ! | GTTCGACACTATTGATGATA+AGG | - | chr8.4:3467594-3467613 | MS.gene57981:intron | 35.0% |
| !! | TAGCTTTGTCCAACTACAAT+TGG | - | chr8.4:3467454-3467473 | MS.gene57981:intron | 35.0% |
| AAATTGAGCCACGCTCTTAT+AGG | - | chr8.4:3466758-3466777 | MS.gene57981:intron | 40.0% | |
| AAGCAATTCAGGAAGCTTCA+CGG | - | chr8.4:3466556-3466575 | MS.gene57981:CDS | 40.0% | |
| AAGTGCATAAAGATTGGGGA+GGG | + | chr8.4:3466894-3466913 | None:intergenic | 40.0% | |
| ACTTGACGTTGAGTTTCTTG+AGG | + | chr8.4:3468031-3468050 | None:intergenic | 40.0% | |
| AGAAGACTTAAGAGAGCTGA+TGG | + | chr8.4:3466969-3466988 | None:intergenic | 40.0% | |
| AGTATAGAGTATACCCTCCA+AGG | - | chr8.4:3467022-3467041 | MS.gene57981:intron | 40.0% | |
| ATAATGAAAGGGCCATGAAG+AGG | + | chr8.4:3467079-3467098 | None:intergenic | 40.0% | |
| CAAGATCCCATCAATCAATC+TGG | + | chr8.4:3467566-3467585 | None:intergenic | 40.0% | |
| CGGAGACTGTCCATTTAATA+TGG | - | chr8.4:3467701-3467720 | MS.gene57981:intron | 40.0% | |
| CTACACCCAGATTGATTGAT+GGG | - | chr8.4:3467557-3467576 | MS.gene57981:intron | 40.0% | |
| CTCTGAGCCCAATAATGAAA+GGG | + | chr8.4:3467090-3467109 | None:intergenic | 40.0% | |
| CTTCATGGCCCTTTCATTAT+TGG | - | chr8.4:3467079-3467098 | MS.gene57981:intron | 40.0% | |
| CTTCTATAGTATACCCTCCA+AGG | - | chr8.4:3466984-3467003 | MS.gene57981:intron | 40.0% | |
| CTTCTCCAACAAATAAGACC+AGG | + | chr8.4:3467366-3467385 | None:intergenic | 40.0% | |
| GGAGTAGATATTCTCTCTGA+AGG | + | chr8.4:3466812-3466831 | None:intergenic | 40.0% | |
| GTACTATCTCTTGACAGCAA+AGG | + | chr8.4:3467139-3467158 | None:intergenic | 40.0% | |
| GTTGTGCAAAGAAGCAATTC+AGG | - | chr8.4:3466545-3466564 | MS.gene57981:CDS | 40.0% | |
| TAAGTGCATAAAGATTGGGG+AGG | + | chr8.4:3466895-3466914 | None:intergenic | 40.0% | |
| TCAGCTTTCAAAGTTCAACC+AGG | - | chr8.4:3467410-3467429 | MS.gene57981:intron | 40.0% | |
| TTGGTTATCTGTTAGGAACC+CGG | - | chr8.4:3466702-3466721 | MS.gene57981:intron | 40.0% | |
| TTTGACAGTGCTCTCATCAA+TGG | + | chr8.4:3467319-3467338 | None:intergenic | 40.0% | |
| ! | ACATGTCATGCTGAGTTTTC+AGG | - | chr8.4:3467285-3467304 | MS.gene57981:intron | 40.0% |
| ! | ACATTTATTGGTGGCTAGGA+CGG | - | chr8.4:3467681-3467700 | MS.gene57981:intron | 40.0% |
| ! | CTTATTTGTTGGAGAAGCAC+TGG | - | chr8.4:3467369-3467388 | MS.gene57981:intron | 40.0% |
| ! | TTGGAGGGTATACTCTATAC+TGG | + | chr8.4:3467023-3467042 | None:intergenic | 40.0% |
| !! | TTTAAGGAGCGTCTTCACAA+TGG | + | chr8.4:3468054-3468073 | None:intergenic | 40.0% |
| AGACCAGGTCAGGATTGTTA+AGG | + | chr8.4:3467351-3467370 | None:intergenic | 45.0% | |
| AGAGCTGATGGTTAATGAGC+TGG | + | chr8.4:3466957-3466976 | None:intergenic | 45.0% | |
| AGAGTATACCCTCCAAGGTT+GGG | - | chr8.4:3467027-3467046 | MS.gene57981:intron | 45.0% | |
| ATTCAGGAAGCTTCACGGAA+TGG | - | chr8.4:3466561-3466580 | MS.gene57981:CDS | 45.0% | |
| CCAACAAATAAGACCAGGTC+AGG | + | chr8.4:3467361-3467380 | None:intergenic | 45.0% | |
| CCACAATCTGATCCTCTTCA+TGG | - | chr8.4:3467064-3467083 | MS.gene57981:intron | 45.0% | |
| CCATCAATCAATCTGGGTGT+AGG | + | chr8.4:3467559-3467578 | None:intergenic | 45.0% | |
| CCATGAAGAGGATCAGATTG+TGG | + | chr8.4:3467067-3467086 | None:intergenic | 45.0% | |
| CCTACACCCAGATTGATTGA+TGG | - | chr8.4:3467556-3467575 | MS.gene57981:intron | 45.0% | |
| CTACCTTAACAATCCTGACC+TGG | - | chr8.4:3467345-3467364 | MS.gene57981:intron | 45.0% | |
| GACGAAGACCCAATTGTAGT+TGG | + | chr8.4:3467466-3467485 | None:intergenic | 45.0% | |
| GACGTTGAGTTTCTTGAGGT+CGG | + | chr8.4:3468027-3468046 | None:intergenic | 45.0% | |
| GAGGATCAGATTGTGGATAC+TGG | + | chr8.4:3467060-3467079 | None:intergenic | 45.0% | |
| GAGTTTCTTGAGGTCGGTAT+AGG | + | chr8.4:3468021-3468040 | None:intergenic | 45.0% | |
| GGTTAATGAGCTGGCATTAG+AGG | + | chr8.4:3466948-3466967 | None:intergenic | 45.0% | |
| TAGAGTATACCCTCCAAGGT+TGG | - | chr8.4:3467026-3467045 | MS.gene57981:intron | 45.0% | |
| TGGTTATCTGTTAGGAACCC+GGG | - | chr8.4:3466703-3466722 | MS.gene57981:intron | 45.0% | |
| TTGCTTCTTTGCACAACAGC+AGG | + | chr8.4:3466542-3466561 | None:intergenic | 45.0% | |
| ! | GCTCTGAGCCCAATAATGAA+AGG | + | chr8.4:3467091-3467110 | None:intergenic | 45.0% |
| ! | GTTGCTTTCCTATAAGAGCG+TGG | + | chr8.4:3466769-3466788 | None:intergenic | 45.0% |
| ! | TATTCTCTCTGAAGGAGCCT+TGG | + | chr8.4:3466804-3466823 | None:intergenic | 45.0% |
| !! | CCTGACCTGGTCTTATTTGT+TGG | - | chr8.4:3467358-3467377 | MS.gene57981:intron | 45.0% |
| !! | TTTGTTGGAGAAGCACTGGT+TGG | - | chr8.4:3467373-3467392 | MS.gene57981:intron | 45.0% |
| AAGGAAGGGGGCGAAATACA+TGG | + | chr8.4:3467806-3467825 | None:intergenic | 50.0% | |
| AGGAAGGGGGCGAAATACAT+GGG | + | chr8.4:3467805-3467824 | None:intergenic | 50.0% | |
| ATTACCTGCATACGACCAGC+TGG | + | chr8.4:3466609-3466628 | None:intergenic | 50.0% | |
| CCAGTCATGTTTGTGGGATG+CGG | - | chr8.4:3467990-3468009 | MS.gene57981:CDS | 50.0% | |
| CTGGGTGTAGGAGATGTGAA+AGG | + | chr8.4:3467547-3467566 | None:intergenic | 50.0% | |
| GGAAGCTTCACGGAATGGTT+CGG | - | chr8.4:3466566-3466585 | MS.gene57981:CDS | 50.0% | |
| GGAGCTCCAGTCATGTTTGT+GGG | - | chr8.4:3467984-3468003 | MS.gene57981:CDS | 50.0% | |
| GGCGAAATACATGGGTGAGA+TGG | + | chr8.4:3467797-3467816 | None:intergenic | 50.0% | |
| TGGAGCTCCAGTCATGTTTG+TGG | - | chr8.4:3467983-3468002 | MS.gene57981:CDS | 50.0% | |
| TTACCTGCATACGACCAGCT+GGG | + | chr8.4:3466608-3466627 | None:intergenic | 50.0% | |
| ACCCTCCAAGGTTGGGATGT+GGG | - | chr8.4:3467034-3467053 | MS.gene57981:intron | 55.0% | |
| ACCCTCCAAGGTTTGCGATG+TGG | - | chr8.4:3466996-3467015 | MS.gene57981:CDS | 55.0% | |
| CCCACATCGCAAACCTTGGA+GGG | + | chr8.4:3467000-3467019 | None:intergenic | 55.0% | |
| CCCTCCAAGGTTTGCGATGT+GGG | - | chr8.4:3466997-3467016 | MS.gene57981:CDS | 55.0% | |
| CCGCATCCCACAAACATGAC+TGG | + | chr8.4:3467993-3468012 | None:intergenic | 55.0% | |
| GGTGGGAGCTGCACTTTCAA+TGG | - | chr8.4:3467950-3467969 | MS.gene57981:intron | 55.0% | |
| TACCCTCCAAGGTTGGGATG+TGG | - | chr8.4:3467033-3467052 | MS.gene57981:intron | 55.0% | |
| ACTGGCCCACATCCCAACCT+TGG | + | chr8.4:3467042-3467061 | None:intergenic | 60.0% | |
| CTGGCCCACATCGCAAACCT+TGG | + | chr8.4:3467004-3467023 | None:intergenic | 60.0% | |
| GCAACAGACCACCTGAGCCA+AGG | - | chr8.4:3466784-3466803 | MS.gene57981:intron | 60.0% | |
| GCCCACATCCCAACCTTGGA+GGG | + | chr8.4:3467038-3467057 | None:intergenic | 60.0% | |
| GCCCACATCGCAAACCTTGG+AGG | + | chr8.4:3467001-3467020 | None:intergenic | 60.0% | |
| GTTGTGCTAGTCGACCCAGC+TGG | - | chr8.4:3466591-3466610 | MS.gene57981:CDS | 60.0% | |
| TGAAGGAGCCTTGGCTCAGG+TGG | + | chr8.4:3466795-3466814 | None:intergenic | 60.0% | |
| ! | CTCTGAAGGAGCCTTGGCTC+AGG | + | chr8.4:3466798-3466817 | None:intergenic | 60.0% |
| CGACCCAGCTGGTCGTATGC+AGG | - | chr8.4:3466602-3466621 | MS.gene57981:CDS | 65.0% | |
| GGCCCACATCCCAACCTTGG+AGG | + | chr8.4:3467039-3467058 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 3466528 | 3468076 | 3466528 | ID=MS.gene57981 |
| chr8.4 | mRNA | 3466528 | 3468076 | 3466528 | ID=MS.gene57981.t1;Parent=MS.gene57981 |
| chr8.4 | exon | 3467981 | 3468076 | 3467981 | ID=MS.gene57981.t1.exon1;Parent=MS.gene57981.t1 |
| chr8.4 | CDS | 3467981 | 3468076 | 3467981 | ID=cds.MS.gene57981.t1;Parent=MS.gene57981.t1 |
| chr8.4 | exon | 3467173 | 3467297 | 3467173 | ID=MS.gene57981.t1.exon2;Parent=MS.gene57981.t1 |
| chr8.4 | CDS | 3467173 | 3467297 | 3467173 | ID=cds.MS.gene57981.t1;Parent=MS.gene57981.t1 |
| chr8.4 | exon | 3466989 | 3467037 | 3466989 | ID=MS.gene57981.t1.exon3;Parent=MS.gene57981.t1 |
| chr8.4 | CDS | 3466989 | 3467037 | 3466989 | ID=cds.MS.gene57981.t1;Parent=MS.gene57981.t1 |
| chr8.4 | exon | 3466528 | 3466653 | 3466528 | ID=MS.gene57981.t1.exon4;Parent=MS.gene57981.t1 |
| chr8.4 | CDS | 3466528 | 3466653 | 3466528 | ID=cds.MS.gene57981.t1;Parent=MS.gene57981.t1 |
| Gene Sequence |
| Protein sequence |
