AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58216

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58216.t1 MTR_4g130360 66.906 278 62 4 73 348 154 403 3.06e-121 357
MS.gene58216.t1 MTR_4g130360 72.897 107 9 2 1 107 20 106 2.26e-30 120
MS.gene58216.t1 MTR_4g112860 57.895 209 68 4 133 325 260 464 7.01e-68 221
MS.gene58216.t1 MTR_4g112860 41.322 121 62 3 6 118 3 122 1.35e-14 75.1
MS.gene58216.t1 MTR_4g112860 56.164 219 76 4 132 334 259 473 1.76e-67 222
MS.gene58216.t1 MTR_4g112860 41.322 121 62 3 6 118 3 122 1.51e-14 75.1
MS.gene58216.t1 MTR_4g112860 56.164 219 76 4 132 334 259 473 5.06e-67 223
MS.gene58216.t1 MTR_4g112860 41.322 121 62 3 6 118 3 122 1.88e-14 74.7
MS.gene58216.t1 MTR_5g082990 57.576 198 62 4 131 325 65 243 8.88e-61 199
MS.gene58216.t1 MTR_2g058970 54.206 214 78 4 129 326 268 477 1.47e-59 203
MS.gene58216.t1 MTR_5g025810 43.750 304 112 11 67 333 35 316 9.82e-57 193
MS.gene58216.t1 MTR_4g112820 52.683 205 67 6 132 326 185 369 2.61e-55 188
MS.gene58216.t1 MTR_4g134260 53.614 166 73 2 173 335 135 299 1.65e-44 158
MS.gene58216.t1 MTR_8g022470 52.299 174 77 4 132 301 27 198 2.36e-44 155
MS.gene58216.t1 MTR_4g112860 50.694 144 51 4 133 260 260 399 1.27e-33 128
MS.gene58216.t1 MTR_4g112860 41.322 121 62 3 6 118 3 122 1.14e-14 75.1
MS.gene58216.t1 MTR_4g123500 38.000 200 109 5 133 325 142 333 2.54e-29 117
MS.gene58216.t1 MTR_5g083100 54.098 122 49 4 151 269 37 154 5.87e-27 110
MS.gene58216.t1 MTR_4g114810 40.000 205 49 5 133 334 179 312 1.17e-25 107
MS.gene58216.t1 MTR_8g022500 49.524 105 44 2 246 341 226 330 4.29e-21 94.7
MS.gene58216.t1 MTR_4g133130 42.373 118 45 3 229 341 50 149 2.66e-15 77.4
MS.gene58216.t1 MTR_4g130550 44.304 79 44 0 248 326 68 146 4.07e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58216.t1 AT1G73990 54.028 211 77 4 131 325 276 482 2.20e-61 207
MS.gene58216.t1 AT1G73990 53.774 212 78 4 131 326 276 483 2.87e-61 208

Find 89 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAAAGGATCTATTATT+TGG 0.128131 8.2:-4569355 None:intergenic
CGAGACAACAACTGCATTAA+TGG 0.184426 8.2:+4568769 MS.gene58216:CDS
TGGATAATATTTACTCAAAT+TGG 0.197209 8.2:+4568789 MS.gene58216:CDS
AATTTGGAAGGTAAGATTTC+TGG 0.242205 8.2:+4568218 MS.gene58216:CDS
TGGAACCTCTTCCATTGATT+TGG 0.252339 8.2:-4569374 None:intergenic
TCATAACGGATTTGCTATAT+AGG 0.286656 8.2:+4568921 MS.gene58216:CDS
CAGTTCAGGAGGTAAATTTC+GGG 0.292898 8.2:+4569177 MS.gene58216:CDS
CCAAGCCTTTCCTTCAAGTT+GGG 0.324316 8.2:-4568956 None:intergenic
CACAGGGGAAGGGGAAGGTT+TGG 0.333477 8.2:+4569395 MS.gene58216:CDS
ACAGGGGAAGGGGAAGGTTT+GGG 0.339836 8.2:+4569396 MS.gene58216:CDS
ACAGTTCAGGAGGTAAATTT+CGG 0.345303 8.2:+4569176 MS.gene58216:CDS
GCAGAAAATCTTACCTTAGT+TGG 0.347938 8.2:+4569322 MS.gene58216:CDS
ATAGCCATCATTCGAGTCTC+AGG 0.356408 8.2:+4569067 MS.gene58216:CDS
CATAACGGATTTGCTATATA+GGG 0.361873 8.2:+4568922 MS.gene58216:CDS
CGCTCGTGCGGTAGAATTTG+AGG 0.386162 8.2:-4568124 None:intergenic
AGTTTATTGAGAATATATAT+AGG 0.390012 8.2:+4569110 MS.gene58216:CDS
CCCAAGCCTTTCCTTCAAGT+TGG 0.390394 8.2:-4568957 None:intergenic
GTTTATTGAGAATATATATA+GGG 0.396139 8.2:+4569111 MS.gene58216:CDS
CTCTGGCTTGAAGAAGTATC+TGG 0.400164 8.2:+4568316 MS.gene58216:CDS
CTCTTCCATTGATTTGGAAA+AGG 0.400283 8.2:-4569368 None:intergenic
ATTGTCCGAATTGACAGTTC+AGG 0.411636 8.2:+4569163 MS.gene58216:CDS
TTGGTTAACTTTGTAACTAA+AGG 0.412796 8.2:+4568863 MS.gene58216:CDS
CCAACTTGAAGGAAAGGCTT+GGG 0.422842 8.2:+4568957 MS.gene58216:CDS
TGGATAATCAACATCCTTGC+CGG 0.434812 8.2:-4568267 None:intergenic
GCTCGTGCGGTAGAATTTGA+GGG 0.437753 8.2:-4568123 None:intergenic
TACCTCCTGAACTGTCAATT+CGG 0.443292 8.2:-4569168 None:intergenic
GTTCTTCAAATCAATTTGTC+CGG 0.445006 8.2:+4568392 MS.gene58216:CDS
GAATTTGAGGGGTTTATGAA+TGG 0.450237 8.2:-4568111 None:intergenic
GGAAGAGGTTCCACAGGGGA+AGG 0.463372 8.2:+4569384 MS.gene58216:CDS
AAGAGGTTCCACAGGGGAAG+GGG 0.467563 8.2:+4569386 MS.gene58216:CDS
CAGATCATCAACAGAATTCA+AGG 0.474665 8.2:+4569135 MS.gene58216:CDS
AGGGGTTTATGAATGGTAGC+AGG 0.476548 8.2:-4568104 None:intergenic
AAGAGAAAATGTCGAAAACT+TGG 0.476552 8.2:+4568844 MS.gene58216:CDS
AAGGATGTTGATTATCCAAC+CGG 0.477750 8.2:+4568272 MS.gene58216:CDS
GCAGGATACTACTTAGCAAC+GGG 0.485513 8.2:+4569283 MS.gene58216:CDS
CAAAGAAGAGGGTTTCATAA+CGG 0.489037 8.2:+4568907 MS.gene58216:CDS
TACTACTTAGCAACGGGAGC+AGG 0.490304 8.2:+4569289 MS.gene58216:CDS
TTCGGGCATCTAATTATATG+TGG 0.492637 8.2:+4569194 MS.gene58216:CDS
TCTGATGTGGCAACAAGTGC+AGG 0.494828 8.2:+4569265 MS.gene58216:CDS
AATCGACTGTTGGAATATCA+AGG 0.496160 8.2:+4569029 MS.gene58216:CDS
TGATATTATCCCCAACTTGA+AGG 0.496185 8.2:+4568946 MS.gene58216:CDS
TACCTCTGAATCGGTGTGTA+GGG 0.501142 8.2:-4568429 None:intergenic
CGCGTTAGTAAATCGACTGT+TGG 0.501184 8.2:+4569019 MS.gene58216:CDS
ATCAATGGAAGAGGTTCCAC+AGG 0.501640 8.2:+4569378 MS.gene58216:CDS
TAGAGATAATACCTCTGAAT+CGG 0.505324 8.2:-4568438 None:intergenic
CCCAACTTGAAGGAAAGGCT+TGG 0.506916 8.2:+4568956 MS.gene58216:CDS
TTTGATTTCATTCCACACTC+TGG 0.514952 8.2:+4568299 MS.gene58216:CDS
GAAGAGGTTCCACAGGGGAA+GGG 0.517831 8.2:+4569385 MS.gene58216:CDS
TTATCCCCAACTTGAAGGAA+AGG 0.520815 8.2:+4568951 MS.gene58216:CDS
TGGAATGAAATCAAAATCTC+CGG 0.524479 8.2:-4568291 None:intergenic
CAAGCCTTTCCTTCAAGTTG+GGG 0.529315 8.2:-4568955 None:intergenic
AACATCCTTGCCGGAAGAAG+AGG 0.530642 8.2:-4568258 None:intergenic
GGGAAGGTTTGGGACTGGTA+AGG 0.532507 8.2:+4569406 MS.gene58216:CDS
GGTTCCACAGGGGAAGGGGA+AGG 0.533194 8.2:+4569390 MS.gene58216:CDS
ATCAGATATTGAAGCAATGA+CGG 0.536024 8.2:-4569248 None:intergenic
TATTCTTTGAAAGAAACAAA+AGG 0.543012 8.2:-4568992 None:intergenic
TGGACTAAAAGAACCAACTA+AGG 0.544447 8.2:-4569335 None:intergenic
TCAGATATTGAAGCAATGAC+GGG 0.551209 8.2:-4569247 None:intergenic
ATACCTCTGAATCGGTGTGT+AGG 0.552557 8.2:-4568430 None:intergenic
CACCCTACACACCGATTCAG+AGG 0.558538 8.2:+4568427 MS.gene58216:CDS
TGAATCGGTGTGTAGGGTGT+CGG 0.562552 8.2:-4568423 None:intergenic
GATGTAGTATCTTCTTCCAC+CGG 0.568021 8.2:+4568815 MS.gene58216:CDS
AGTAGAAGAACTCAAAGAAG+AGG 0.568425 8.2:+4568895 MS.gene58216:CDS
AGACCCTGAGACTCGAATGA+TGG 0.571972 8.2:-4569071 None:intergenic
CTCGTGCGGTAGAATTTGAG+GGG 0.580670 8.2:-4568122 None:intergenic
CTGCTAGCACTCCCCTCAGA+GGG 0.583729 8.2:+4568353 MS.gene58216:CDS
AGCAGGTGATATACAGCGAT+CGG 0.592109 8.2:-4568087 None:intergenic
GTAGAAGAACTCAAAGAAGA+GGG 0.593743 8.2:+4568896 MS.gene58216:CDS
TAGGGTGTCGGATATTATGC+CGG 0.594782 8.2:-4568411 None:intergenic
ATGAAATCAAAATCTCCGGT+TGG 0.594805 8.2:-4568287 None:intergenic
TACTTCTTCAAGCCAGAGTG+TGG 0.594882 8.2:-4568311 None:intergenic
TTAATGCAGTTGTTGTCTCG+TGG 0.598388 8.2:-4568766 None:intergenic
ATCGACTGTTGGAATATCAA+GGG 0.598413 8.2:+4569030 MS.gene58216:CDS
CAAACCTTCCCCTTCCCCTG+TGG 0.598604 8.2:-4569394 None:intergenic
CATTGCTTCAATATCTGATG+TGG 0.601190 8.2:+4569252 MS.gene58216:CDS
TAGCCATCATTCGAGTCTCA+GGG 0.606571 8.2:+4569068 MS.gene58216:CDS
CGATCAATAATAGAAGATGA+TGG 0.608918 8.2:-4568161 None:intergenic
TGCAGGATACTACTTAGCAA+CGG 0.610387 8.2:+4569282 MS.gene58216:CDS
CGGAAGAAGAGGAAAATAAG+TGG 0.613550 8.2:-4568247 None:intergenic
GGAAGGGGAAGGTTTGGGAC+TGG 0.617731 8.2:+4569401 MS.gene58216:CDS
ATAATAGAAGATGATGGTGG+CGG 0.619265 8.2:-4568155 None:intergenic
GTCCGAATTGACAGTTCAGG+AGG 0.622572 8.2:+4569166 MS.gene58216:CDS
AGGGTCTATCAGTAGTGCAA+CGG 0.633641 8.2:+4569087 MS.gene58216:CDS
CAACTTGAAGGAAAGGCTTG+GGG 0.634279 8.2:+4568958 MS.gene58216:CDS
TCAATGGAAGAGGTTCCACA+GGG 0.668896 8.2:+4569379 MS.gene58216:CDS
TCTGCTAGCACTCCCCTCAG+AGG 0.672433 8.2:+4568352 MS.gene58216:CDS
GCGGTGATATTGCGCTCGTG+CGG 0.694021 8.2:-4568136 None:intergenic
TCAATAATAGAAGATGATGG+TGG 0.696702 8.2:-4568158 None:intergenic
CAATGGAAGAGGTTCCACAG+GGG 0.794420 8.2:+4569380 MS.gene58216:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATTGAGAATATATAT+AGG + chr8.2:4569110-4569129 MS.gene58216:CDS 15.0%
!! CACAAATTTAGTTATATTAA+GGG + chr8.2:4568719-4568738 MS.gene58216:intron 15.0%
!! GTTTATTGAGAATATATATA+GGG + chr8.2:4569111-4569130 MS.gene58216:CDS 15.0%
!! TCACAAATTTAGTTATATTA+AGG + chr8.2:4568718-4568737 MS.gene58216:intron 15.0%
!!! AAATTGAATTTTTTGTGAAT+CGG - chr8.2:4568203-4568222 None:intergenic 15.0%
!! ATCTTAAATTTCAGAAAATC+AGG + chr8.2:4568578-4568597 MS.gene58216:intron 20.0%
!! GATTCACAAAAAATTCAATT+TGG + chr8.2:4568202-4568221 MS.gene58216:CDS 20.0%
!! TGGATAATATTTACTCAAAT+TGG + chr8.2:4568789-4568808 MS.gene58216:CDS 20.0%
!!! TATTCTTTGAAAGAAACAAA+AGG - chr8.2:4568995-4569014 None:intergenic 20.0%
! AACAAATTATCGCAAATTTG+AGG - chr8.2:4568464-4568483 None:intergenic 25.0%
! AATATCCAAAATTTGAACAC+TGG + chr8.2:4568524-4568543 MS.gene58216:intron 25.0%
! AGATATACAACATAAATACG+AGG - chr8.2:4568503-4568522 None:intergenic 25.0%
! ATAACTAAATTTGTGAACAG+TGG - chr8.2:4568714-4568733 None:intergenic 25.0%
! CACAAAAAATTCAATTTGGA+AGG + chr8.2:4568206-4568225 MS.gene58216:CDS 25.0%
! TAACTAAATTTGTGAACAGT+GGG - chr8.2:4568713-4568732 None:intergenic 25.0%
! TTGGAAAAGGATCTATTATT+TGG - chr8.2:4569358-4569377 None:intergenic 25.0%
! TTGGTTAACTTTGTAACTAA+AGG + chr8.2:4568863-4568882 MS.gene58216:CDS 25.0%
AAGAGAAAATGTCGAAAACT+TGG + chr8.2:4568844-4568863 MS.gene58216:CDS 30.0%
AATTTGGAAGGTAAGATTTC+TGG + chr8.2:4568218-4568237 MS.gene58216:CDS 30.0%
ATAAATACGAGGATCATACA+TGG - chr8.2:4568492-4568511 None:intergenic 30.0%
ATCAGATATTGAAGCAATGA+CGG - chr8.2:4569251-4569270 None:intergenic 30.0%
CGATCAATAATAGAAGATGA+TGG - chr8.2:4568164-4568183 None:intergenic 30.0%
GTAAACTAGATGAAATTCGA+AGG + chr8.2:4568552-4568571 MS.gene58216:intron 30.0%
GTTCTTCAAATCAATTTGTC+CGG + chr8.2:4568392-4568411 MS.gene58216:CDS 30.0%
TACAAATGAACCTCAACAAA+AGG - chr8.2:4568686-4568705 None:intergenic 30.0%
TAGAGATAATACCTCTGAAT+CGG - chr8.2:4568441-4568460 None:intergenic 30.0%
TGGAATGAAATCAAAATCTC+CGG - chr8.2:4568294-4568313 None:intergenic 30.0%
TTTGTTGAGGTTCATTTGTA+TGG + chr8.2:4568686-4568705 MS.gene58216:intron 30.0%
! ACTCTTTTACTCCAATTTCA+GGG - chr8.2:4568625-4568644 None:intergenic 30.0%
! GACATTTTCTCTTTTCTTTC+CGG - chr8.2:4568837-4568856 None:intergenic 30.0%
! TACTCTTTTACTCCAATTTC+AGG - chr8.2:4568626-4568645 None:intergenic 30.0%
! TAGATCCTTTTCCAAATCAA+TGG + chr8.2:4569363-4569382 MS.gene58216:CDS 30.0%
! TCAATAATAGAAGATGATGG+TGG - chr8.2:4568161-4568180 None:intergenic 30.0%
!! CATAACGGATTTGCTATATA+GGG + chr8.2:4568922-4568941 MS.gene58216:CDS 30.0%
!! TCATAACGGATTTGCTATAT+AGG + chr8.2:4568921-4568940 MS.gene58216:CDS 30.0%
AATCGACTGTTGGAATATCA+AGG + chr8.2:4569029-4569048 MS.gene58216:CDS 35.0%
AATGAACCTCAACAAAAGGA+TGG - chr8.2:4568682-4568701 None:intergenic 35.0%
ACAGTTCAGGAGGTAAATTT+CGG + chr8.2:4569176-4569195 MS.gene58216:CDS 35.0%
AGTAGAAGAACTCAAAGAAG+AGG + chr8.2:4568895-4568914 MS.gene58216:CDS 35.0%
ATCGACTGTTGGAATATCAA+GGG + chr8.2:4569030-4569049 MS.gene58216:CDS 35.0%
ATGAAATCAAAATCTCCGGT+TGG - chr8.2:4568290-4568309 None:intergenic 35.0%
ATGAACCTCAACAAAAGGAT+GGG - chr8.2:4568681-4568700 None:intergenic 35.0%
CAAAGAAGAGGGTTTCATAA+CGG + chr8.2:4568907-4568926 MS.gene58216:CDS 35.0%
CAGATCATCAACAGAATTCA+AGG + chr8.2:4569135-4569154 MS.gene58216:CDS 35.0%
CATTGCTTCAATATCTGATG+TGG + chr8.2:4569252-4569271 MS.gene58216:CDS 35.0%
GAATTTGAGGGGTTTATGAA+TGG - chr8.2:4568114-4568133 None:intergenic 35.0%
GCAGAAAATCTTACCTTAGT+TGG + chr8.2:4569322-4569341 MS.gene58216:CDS 35.0%
GTAGAAGAACTCAAAGAAGA+GGG + chr8.2:4568896-4568915 MS.gene58216:CDS 35.0%
TCAGATATTGAAGCAATGAC+GGG - chr8.2:4569250-4569269 None:intergenic 35.0%
TCCAAAATTTGAACACTGGT+TGG + chr8.2:4568528-4568547 MS.gene58216:intron 35.0%
TGATATTATCCCCAACTTGA+AGG + chr8.2:4568946-4568965 MS.gene58216:CDS 35.0%
TGGACTAAAAGAACCAACTA+AGG - chr8.2:4569338-4569357 None:intergenic 35.0%
TTCGGGCATCTAATTATATG+TGG + chr8.2:4569194-4569213 MS.gene58216:CDS 35.0%
TTTGCTTATGTCCCTGAAAT+TGG + chr8.2:4568611-4568630 MS.gene58216:intron 35.0%
! AAGGATGTTGATTATCCAAC+CGG + chr8.2:4568272-4568291 MS.gene58216:CDS 35.0%
! ATTTTCTCTTTTCTTTCCGG+TGG - chr8.2:4568834-4568853 None:intergenic 35.0%
! CAAAATTTGAACACTGGTTG+GGG + chr8.2:4568530-4568549 MS.gene58216:intron 35.0%
! CCAAAATTTGAACACTGGTT+GGG + chr8.2:4568529-4568548 MS.gene58216:intron 35.0%
! CTTTTCCAAATCAATGGAAG+AGG + chr8.2:4569369-4569388 MS.gene58216:CDS 35.0%
! TTTGATTTCATTCCACACTC+TGG + chr8.2:4568299-4568318 MS.gene58216:CDS 35.0%
!! ATAATAGAAGATGATGGTGG+CGG - chr8.2:4568158-4568177 None:intergenic 35.0%
!! CACTTATTTTCCTCTTCTTC+CGG + chr8.2:4568248-4568267 MS.gene58216:CDS 35.0%
!! CTCTTCCATTGATTTGGAAA+AGG - chr8.2:4569371-4569390 None:intergenic 35.0%
ATTGTCCGAATTGACAGTTC+AGG + chr8.2:4569163-4569182 MS.gene58216:CDS 40.0%
CAGTTCAGGAGGTAAATTTC+GGG + chr8.2:4569177-4569196 MS.gene58216:CDS 40.0%
CGAGACAACAACTGCATTAA+TGG + chr8.2:4568769-4568788 MS.gene58216:CDS 40.0%
CGGAAGAAGAGGAAAATAAG+TGG - chr8.2:4568250-4568269 None:intergenic 40.0%
GATGTAGTATCTTCTTCCAC+CGG + chr8.2:4568815-4568834 MS.gene58216:CDS 40.0%
TACCTCCTGAACTGTCAATT+CGG - chr8.2:4569171-4569190 None:intergenic 40.0%
TGCAGGATACTACTTAGCAA+CGG + chr8.2:4569282-4569301 MS.gene58216:CDS 40.0%
TGGATAATCAACATCCTTGC+CGG - chr8.2:4568270-4568289 None:intergenic 40.0%
TTAATGCAGTTGTTGTCTCG+TGG - chr8.2:4568769-4568788 None:intergenic 40.0%
TTATCCCCAACTTGAAGGAA+AGG + chr8.2:4568951-4568970 MS.gene58216:CDS 40.0%
! ATATGCCCATCCTTTTGTTG+AGG + chr8.2:4568673-4568692 MS.gene58216:intron 40.0%
! CCCAACCAGTGTTCAAATTT+TGG - chr8.2:4568532-4568551 None:intergenic 40.0%
! TGGAACCTCTTCCATTGATT+TGG - chr8.2:4569377-4569396 None:intergenic 40.0%
!!! TGAAGCAATGACGGGTTTTT+CGG - chr8.2:4569242-4569261 None:intergenic 40.0%
AGCAGGTGATATACAGCGAT+CGG - chr8.2:4568090-4568109 None:intergenic 45.0%
AGGGGTTTATGAATGGTAGC+AGG - chr8.2:4568107-4568126 None:intergenic 45.0%
AGGGTCTATCAGTAGTGCAA+CGG + chr8.2:4569087-4569106 MS.gene58216:CDS 45.0%
ATACCTCTGAATCGGTGTGT+AGG - chr8.2:4568433-4568452 None:intergenic 45.0%
ATAGCCATCATTCGAGTCTC+AGG + chr8.2:4569067-4569086 MS.gene58216:CDS 45.0%
ATCAATGGAAGAGGTTCCAC+AGG + chr8.2:4569378-4569397 MS.gene58216:CDS 45.0%
CAACTTGAAGGAAAGGCTTG+GGG + chr8.2:4568958-4568977 MS.gene58216:CDS 45.0%
CCAACTTGAAGGAAAGGCTT+GGG + chr8.2:4568957-4568976 MS.gene58216:CDS 45.0%
CGCGTTAGTAAATCGACTGT+TGG + chr8.2:4569019-4569038 MS.gene58216:CDS 45.0%
GCAGGATACTACTTAGCAAC+GGG + chr8.2:4569283-4569302 MS.gene58216:CDS 45.0%
TACCTCTGAATCGGTGTGTA+GGG - chr8.2:4568432-4568451 None:intergenic 45.0%
TACTTCTTCAAGCCAGAGTG+TGG - chr8.2:4568314-4568333 None:intergenic 45.0%
TAGCCATCATTCGAGTCTCA+GGG + chr8.2:4569068-4569087 MS.gene58216:CDS 45.0%
TCAATGGAAGAGGTTCCACA+GGG + chr8.2:4569379-4569398 MS.gene58216:CDS 45.0%
! ATTTTCCTCTTCTTCCGGCA+AGG + chr8.2:4568253-4568272 MS.gene58216:CDS 45.0%
! CCAAGCCTTTCCTTCAAGTT+GGG - chr8.2:4568959-4568978 None:intergenic 45.0%
! CGTTTTTAACACCCTCTGAG+GGG - chr8.2:4568367-4568386 None:intergenic 45.0%
!! CAAGCCTTTCCTTCAAGTTG+GGG - chr8.2:4568958-4568977 None:intergenic 45.0%
!! CCCTCAGAGGGTGTTAAAAA+CGG + chr8.2:4568365-4568384 MS.gene58216:CDS 45.0%
!! CCGTTTTTAACACCCTCTGA+GGG - chr8.2:4568368-4568387 None:intergenic 45.0%
!! CTCTGGCTTGAAGAAGTATC+TGG + chr8.2:4568316-4568335 MS.gene58216:CDS 45.0%
!! TAGGGTGTCGGATATTATGC+CGG - chr8.2:4568414-4568433 None:intergenic 45.0%
AACATCCTTGCCGGAAGAAG+AGG - chr8.2:4568261-4568280 None:intergenic 50.0%
AGACCCTGAGACTCGAATGA+TGG - chr8.2:4569074-4569093 None:intergenic 50.0%
CAATGGAAGAGGTTCCACAG+GGG + chr8.2:4569380-4569399 MS.gene58216:CDS 50.0%
CCCAACTTGAAGGAAAGGCT+TGG + chr8.2:4568956-4568975 MS.gene58216:CDS 50.0%
CCCAAGCCTTTCCTTCAAGT+TGG - chr8.2:4568960-4568979 None:intergenic 50.0%
CTCGTGCGGTAGAATTTGAG+GGG - chr8.2:4568125-4568144 None:intergenic 50.0%
GCTCGTGCGGTAGAATTTGA+GGG - chr8.2:4568126-4568145 None:intergenic 50.0%
GTCCGAATTGACAGTTCAGG+AGG + chr8.2:4569166-4569185 MS.gene58216:CDS 50.0%
TACTACTTAGCAACGGGAGC+AGG + chr8.2:4569289-4569308 MS.gene58216:CDS 50.0%
TCTGATGTGGCAACAAGTGC+AGG + chr8.2:4569265-4569284 MS.gene58216:CDS 50.0%
TGAATCGGTGTGTAGGGTGT+CGG - chr8.2:4568426-4568445 None:intergenic 50.0%
!!! GCCGTTTTTAACACCCTCTG+AGG - chr8.2:4568369-4568388 None:intergenic 50.0%
AAGAGGTTCCACAGGGGAAG+GGG + chr8.2:4569386-4569405 MS.gene58216:CDS 55.0%
ACAGGGGAAGGGGAAGGTTT+GGG + chr8.2:4569396-4569415 MS.gene58216:CDS 55.0%
CGCTCGTGCGGTAGAATTTG+AGG - chr8.2:4568127-4568146 None:intergenic 55.0%
GAAGAGGTTCCACAGGGGAA+GGG + chr8.2:4569385-4569404 MS.gene58216:CDS 55.0%
!! CACCCTACACACCGATTCAG+AGG + chr8.2:4568427-4568446 MS.gene58216:CDS 55.0%
CAAACCTTCCCCTTCCCCTG+TGG - chr8.2:4569397-4569416 None:intergenic 60.0%
CACAGGGGAAGGGGAAGGTT+TGG + chr8.2:4569395-4569414 MS.gene58216:CDS 60.0%
CTGCTAGCACTCCCCTCAGA+GGG + chr8.2:4568353-4568372 MS.gene58216:CDS 60.0%
GCGGTGATATTGCGCTCGTG+CGG - chr8.2:4568139-4568158 None:intergenic 60.0%
GGAAGAGGTTCCACAGGGGA+AGG + chr8.2:4569384-4569403 MS.gene58216:CDS 60.0%
TCTGCTAGCACTCCCCTCAG+AGG + chr8.2:4568352-4568371 MS.gene58216:CDS 60.0%
! GGAAGGGGAAGGTTTGGGAC+TGG + chr8.2:4569401-4569420 MS.gene58216:CDS 60.0%
GGTTCCACAGGGGAAGGGGA+AGG + chr8.2:4569390-4569409 MS.gene58216:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 4568083 4569426 4568083 ID=MS.gene58216
chr8.2 mRNA 4568083 4569426 4568083 ID=MS.gene58216.t1;Parent=MS.gene58216
chr8.2 exon 4568083 4568448 4568083 ID=MS.gene58216.t1.exon1;Parent=MS.gene58216.t1
chr8.2 CDS 4568083 4568448 4568083 ID=cds.MS.gene58216.t1;Parent=MS.gene58216.t1
chr8.2 exon 4568740 4569426 4568740 ID=MS.gene58216.t1.exon2;Parent=MS.gene58216.t1
chr8.2 CDS 4568740 4569426 4568740 ID=cds.MS.gene58216.t1;Parent=MS.gene58216.t1
Gene Sequence

>MS.gene58216

ATGGCCGATCGCTGTATATCACCTGCTACCATTCATAAACCCCTCAAATTCTACCGCACGAGCGCAATATCACCGCCACCATCATCTTCTATTATTGATCGCTTGACATCTTCTGCTCCGATTCACAAAAAATTCAATTTGGAAGGTAAGATTTCTGGTCTGATCCACTTATTTTCCTCTTCTTCCGGCAAGGATGTTGATTATCCAACCGGAGATTTTGATTTCATTCCACACTCTGGCTTGAAGAAGTATCTGGTTCAACTTAAGACTCTGCTAGCACTCCCCTCAGAGGGTGTTAAAAACGGCAGTGTTCTTCAAATCAATTTGTCCGGCATAATATCCGACACCCTACACACCGATTCAGAGGTATTATCTCTACCTCAAATTTGCGATAATTTGTTGAAAGCCATGTATGATCCTCGTATTTATGTTGTATATCTCAATATCCAAAATTTGAACACTGGTTGGGGTAAACTAGATGAAATTCGAAGGCAAATCTTAAATTTCAGAAAATCAGGAAAACTTATCTTTGCTTATGTCCCTGAAATTGGAGTAAAAGAGTATTACGTCGCTAGTGCATGTAAAGAAATATATGCCCATCCTTTTGTTGAGGTTCATTTGTATGGACCCACTGTTCACAAATTTAGTTATATTAAGGGTGTTTATCACAACTTTGACTTTAGCCACGAGACAACAACTGCATTAATGGATAATATTTACTCAAATTGGCTAGATGTAGTATCTTCTTCCACCGGAAAGAAAAGAGAAAATGTCGAAAACTTGGTTAACTTTGTAACTAAAGGTGTCTATCAAGTAGAAGAACTCAAAGAAGAGGGTTTCATAACGGATTTGCTATATAGGGATGATATTATCCCCAACTTGAAGGAAAGGCTTGGGGTGAGATCACTGCCTTTTGTTTCTTTCAAAGAATACTCTCGCGTTAGTAAATCGACTGTTGGAATATCAAGGGCTGAAGAAGAACTAATAGCCATCATTCGAGTCTCAGGGTCTATCAGTAGTGCAACGGAGTTTATTGAGAATATATATAGGGTCAGATCATCAACAGAATTCAAGGCTGTTATTGTCCGAATTGACAGTTCAGGAGGTAAATTTCGGGCATCTAATTATATGTGGAGAGAAATGAAACGTCTTGCTGCCGAAAAACCCGTCATTGCTTCAATATCTGATGTGGCAACAAGTGCAGGATACTACTTAGCAACGGGAGCAGGAGCTATTGTTGCAGAAAATCTTACCTTAGTTGGTTCTTTTAGTCCAAATAATAGATCCTTTTCCAAATCAATGGAAGAGGTTCCACAGGGGAAGGGGAAGGTTTGGGACTGGTAA
Protein sequence

>MS.gene58216.t1

MADRCISPATIHKPLKFYRTSAISPPPSSSIIDRLTSSAPIHKKFNLEGKISGLIHLFSSSSGKDVDYPTGDFDFIPHSGLKKYLVQLKTLLALPSEGVKNGSVLQINLSGIISDTLHTDSEGVYHNFDFSHETTTALMDNIYSNWLDVVSSSTGKKRENVENLVNFVTKGVYQVEELKEEGFITDLLYRDDIIPNLKERLGVRSLPFVSFKEYSRVSKSTVGISRAEEELIAIIRVSGSISSATEFIENIYRVRSSTEFKAVIVRIDSSGGKFRASNYMWREMKRLAAEKPVIASISDVATSAGYYLATGAGAIVAENLTLVGSFSPNNRSFSKSMEEVPQGKGKVWDW