Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060334.t1 | XP_024636611.1 | 78 | 519 | 65 | 5 | 1 | 512 | 1 | 477 | 4.50E-213 | 750.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060334.t1 | Q9C9C0 | 44.2 | 538 | 189 | 10 | 68 | 501 | 84 | 614 | 1.6e-102 | 374.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060334.t1 | G7JFI3 | 74.0 | 512 | 72 | 4 | 1 | 512 | 13 | 463 | 1.1e-197 | 699.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060135 | MS.gene060334 | 0.804406 | 2.19E-49 | -1.69E-46 |
| MS.gene060332 | MS.gene060334 | 0.890482 | 9.47E-74 | -1.69E-46 |
| MS.gene060334 | MS.gene57879 | 0.808371 | 3.20E-50 | -1.69E-46 |
| MS.gene060334 | MS.gene58067 | 0.961899 | 3.07E-120 | -1.69E-46 |
| MS.gene060334 | MS.gene58069 | 0.938733 | 4.12E-99 | -1.69E-46 |
| MS.gene060334 | MS.gene58206 | 0.981733 | 2.59E-153 | -1.69E-46 |
| MS.gene060334 | MS.gene58216 | 0.96246 | 6.66E-121 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060334.t1 | MTR_4g130360 | 77.930 | 512 | 52 | 4 | 1 | 512 | 13 | 463 | 0.0 | 759 |
| MS.gene060334.t1 | MTR_4g112860 | 48.339 | 602 | 190 | 14 | 13 | 501 | 3 | 596 | 1.14e-161 | 475 |
| MS.gene060334.t1 | MTR_2g058970 | 46.629 | 534 | 174 | 11 | 72 | 501 | 82 | 608 | 6.72e-140 | 419 |
| MS.gene060334.t1 | MTR_4g112860 | 50.855 | 468 | 173 | 10 | 13 | 429 | 3 | 464 | 3.50e-137 | 406 |
| MS.gene060334.t1 | MTR_4g112860 | 49.203 | 502 | 196 | 11 | 13 | 461 | 3 | 498 | 3.77e-137 | 409 |
| MS.gene060334.t1 | MTR_5g025810 | 43.348 | 466 | 136 | 10 | 74 | 500 | 35 | 411 | 3.24e-106 | 328 |
| MS.gene060334.t1 | MTR_4g112860 | 47.146 | 403 | 156 | 10 | 13 | 364 | 3 | 399 | 4.11e-102 | 313 |
| MS.gene060334.t1 | MTR_4g112820 | 42.578 | 512 | 141 | 14 | 67 | 493 | 42 | 485 | 5.73e-100 | 310 |
| MS.gene060334.t1 | MTR_4g134260 | 43.577 | 397 | 151 | 8 | 123 | 501 | 35 | 376 | 1.47e-87 | 276 |
| MS.gene060334.t1 | MTR_4g114810 | 42.826 | 460 | 108 | 14 | 94 | 501 | 65 | 421 | 6.53e-82 | 264 |
| MS.gene060334.t1 | MTR_5g082990 | 46.584 | 322 | 103 | 13 | 193 | 465 | 8 | 309 | 1.24e-65 | 218 |
| MS.gene060334.t1 | MTR_8g022470 | 46.441 | 295 | 121 | 9 | 236 | 497 | 27 | 317 | 6.84e-64 | 211 |
| MS.gene060334.t1 | MTR_4g123500 | 32.883 | 444 | 215 | 12 | 126 | 494 | 5 | 440 | 1.27e-52 | 186 |
| MS.gene060334.t1 | MTR_5g083100 | 43.852 | 244 | 99 | 8 | 255 | 495 | 37 | 245 | 1.08e-41 | 155 |
| MS.gene060334.t1 | MTR_8g022500 | 47.030 | 202 | 48 | 4 | 350 | 494 | 226 | 425 | 2.94e-38 | 147 |
| MS.gene060334.t1 | MTR_8g022500 | 42.537 | 134 | 35 | 3 | 74 | 205 | 60 | 153 | 1.67e-22 | 101 |
| MS.gene060334.t1 | MTR_4g133130 | 46.392 | 194 | 54 | 5 | 333 | 494 | 50 | 225 | 2.20e-34 | 137 |
| MS.gene060334.t1 | MTR_5g083090 | 46.386 | 166 | 75 | 6 | 98 | 256 | 1 | 159 | 2.21e-30 | 116 |
| MS.gene060334.t1 | MTR_4g130550 | 44.304 | 79 | 44 | 0 | 352 | 430 | 68 | 146 | 1.44e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060334.t1 | AT1G73990 | 41.144 | 542 | 211 | 11 | 63 | 501 | 78 | 614 | 1.51e-113 | 352 |
| MS.gene060334.t1 | AT1G73990 | 45.662 | 438 | 189 | 8 | 68 | 461 | 84 | 516 | 3.35e-111 | 343 |
Find 132 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAACCAGTGTTCAAATTT+TGG | 0.096910 | 8.2:-4501785 | None:intergenic |
| TTGGAAAAGGATCTATTATT+TGG | 0.128131 | 8.2:-4502611 | None:intergenic |
| CGAGACAACAACTGCATTAA+TGG | 0.184426 | 8.2:+4502025 | MS.gene060334:CDS |
| TTTGCTTATGTCCCTGAAAT+TGG | 0.196065 | 8.2:+4501867 | MS.gene060334:CDS |
| TCACAAATTTAGTTATATTA+AGG | 0.196805 | 8.2:+4501974 | MS.gene060334:CDS |
| TGGATAATATTTACTCAAAT+TGG | 0.197209 | 8.2:+4502045 | MS.gene060334:CDS |
| AATTTGGAAGGTAAGATTTC+TGG | 0.242205 | 8.2:+4501474 | MS.gene060334:CDS |
| TGGAACCTCTTCCATTGATT+TGG | 0.252339 | 8.2:-4502630 | None:intergenic |
| TTTGTTGAGGTTCATTTGTA+TGG | 0.259020 | 8.2:+4501942 | MS.gene060334:CDS |
| AGGAGGAATTTAATCTTCTT+TGG | 0.260660 | 8.2:+4502828 | MS.gene060334:CDS |
| CTCGGTTTGGTTGATGCTAT+TGG | 0.265550 | 8.2:+4502695 | MS.gene060334:CDS |
| TCATAACGGATTTGCTATAT+AGG | 0.286656 | 8.2:+4502177 | MS.gene060334:CDS |
| CAGTTCAGGAGGTAAATTTC+GGG | 0.292898 | 8.2:+4502433 | MS.gene060334:CDS |
| CCAAGCCTTTCCTTCAAGTT+GGG | 0.324316 | 8.2:-4502212 | None:intergenic |
| CACAAATTTAGTTATATTAA+GGG | 0.331412 | 8.2:+4501975 | MS.gene060334:CDS |
| TTAGTGCATCCTAATCTTCT+TGG | 0.333889 | 8.2:+4502863 | MS.gene060334:CDS |
| ACAGTTCAGGAGGTAAATTT+CGG | 0.345303 | 8.2:+4502432 | MS.gene060334:CDS |
| GCAGAAAATCTTACCTTAGT+TGG | 0.347938 | 8.2:+4502578 | MS.gene060334:CDS |
| ATCTTAAATTTCAGAAAATC+AGG | 0.347978 | 8.2:+4501834 | MS.gene060334:CDS |
| CCAAAATTTGAACACTGGTT+GGG | 0.355126 | 8.2:+4501785 | MS.gene060334:CDS |
| ATAGCCATCATTCGAGTCTC+AGG | 0.356408 | 8.2:+4502323 | MS.gene060334:CDS |
| CACAGGGGAAGGGGAAGGTT+TGG | 0.359665 | 8.2:+4502651 | MS.gene060334:CDS |
| CATAACGGATTTGCTATATA+GGG | 0.361873 | 8.2:+4502178 | MS.gene060334:CDS |
| CGCTCGTGCGGTAGAATTTG+AGG | 0.386162 | 8.2:-4501380 | None:intergenic |
| AAGGCCAATATACCTCAAAA+TGG | 0.388556 | 8.2:+4502752 | MS.gene060334:CDS |
| AGTTTATTGAGAATATATAT+AGG | 0.390012 | 8.2:+4502366 | MS.gene060334:CDS |
| CCCAAGCCTTTCCTTCAAGT+TGG | 0.390394 | 8.2:-4502213 | None:intergenic |
| GTTTATTGAGAATATATATA+GGG | 0.396139 | 8.2:+4502367 | MS.gene060334:CDS |
| CTCTGGCTTGAAGAAGTATC+TGG | 0.400164 | 8.2:+4501572 | MS.gene060334:CDS |
| CTCTTCCATTGATTTGGAAA+AGG | 0.400283 | 8.2:-4502624 | None:intergenic |
| ATTGTCCGAATTGACAGTTC+AGG | 0.411636 | 8.2:+4502419 | MS.gene060334:CDS |
| TTGGTTAACTTTGTAACTAA+AGG | 0.412796 | 8.2:+4502119 | MS.gene060334:CDS |
| CCAACTTGAAGGAAAGGCTT+GGG | 0.422842 | 8.2:+4502213 | MS.gene060334:CDS |
| TGGATAATCAACATCCTTGC+CGG | 0.434812 | 8.2:-4501523 | None:intergenic |
| TCCAAAATTTGAACACTGGT+TGG | 0.435258 | 8.2:+4501784 | MS.gene060334:CDS |
| GCTCGTGCGGTAGAATTTGA+GGG | 0.437753 | 8.2:-4501379 | None:intergenic |
| CTCCCAGGGTAAAGTTGGAC+AGG | 0.443050 | 8.2:-4502804 | None:intergenic |
| TACCTCCTGAACTGTCAATT+CGG | 0.443292 | 8.2:-4502424 | None:intergenic |
| GTTCTTCAAATCAATTTGTC+CGG | 0.445006 | 8.2:+4501648 | MS.gene060334:CDS |
| TCCTCCTCCCAGGGTAAAGT+TGG | 0.446367 | 8.2:-4502809 | None:intergenic |
| GAATTTGAGGGGTTTATGAA+TGG | 0.450237 | 8.2:-4501367 | None:intergenic |
| TACAAATGAACCTCAACAAA+AGG | 0.456509 | 8.2:-4501939 | None:intergenic |
| CAAAATTTGAACACTGGTTG+GGG | 0.459205 | 8.2:+4501786 | MS.gene060334:CDS |
| GGAAGAGGTTCCACAGGGGA+AGG | 0.463372 | 8.2:+4502640 | MS.gene060334:CDS |
| AAGAGGTTCCACAGGGGAAG+GGG | 0.467563 | 8.2:+4502642 | MS.gene060334:CDS |
| CAGATCATCAACAGAATTCA+AGG | 0.474665 | 8.2:+4502391 | MS.gene060334:CDS |
| ATTAAATTCCTCCTCCTCCC+AGG | 0.476401 | 8.2:-4502819 | None:intergenic |
| AGGGGTTTATGAATGGTAGC+AGG | 0.476548 | 8.2:-4501360 | None:intergenic |
| AAGAGAAAATGTCGAAAACT+TGG | 0.476552 | 8.2:+4502100 | MS.gene060334:CDS |
| AAGGATGTTGATTATCCAAC+CGG | 0.477750 | 8.2:+4501528 | MS.gene060334:CDS |
| AAGTTGTGACCAAGAAGATT+AGG | 0.481987 | 8.2:-4502872 | None:intergenic |
| AACTTTACCCTGGGAGGAGG+AGG | 0.483757 | 8.2:+4502811 | MS.gene060334:CDS |
| GCAGGATACTACTTAGCAAC+GGG | 0.485513 | 8.2:+4502539 | MS.gene060334:CDS |
| CAAAGAAGAGGGTTTCATAA+CGG | 0.489037 | 8.2:+4502163 | MS.gene060334:CDS |
| TACTACTTAGCAACGGGAGC+AGG | 0.490304 | 8.2:+4502545 | MS.gene060334:CDS |
| GGACGCAACATCTCTCGGTT+TGG | 0.491111 | 8.2:+4502682 | MS.gene060334:CDS |
| TTCGGGCATCTAATTATATG+TGG | 0.492637 | 8.2:+4502450 | MS.gene060334:CDS |
| TCTGATGTGGCAACAAGTGC+AGG | 0.494828 | 8.2:+4502521 | MS.gene060334:CDS |
| AACAAATTATCGCAAATTTG+AGG | 0.494896 | 8.2:-4501717 | None:intergenic |
| AATCGACTGTTGGAATATCA+AGG | 0.496160 | 8.2:+4502285 | MS.gene060334:CDS |
| TGATATTATCCCCAACTTGA+AGG | 0.496185 | 8.2:+4502202 | MS.gene060334:CDS |
| TGTTACTGCATTATTCGTAA+AGG | 0.500089 | 8.2:+4502894 | MS.gene060334:CDS |
| TATTGCTATAGCAAAATTGA+AGG | 0.500409 | 8.2:+4502733 | MS.gene060334:CDS |
| TACCTCTGAATCGGTGTGTA+GGG | 0.501142 | 8.2:-4501685 | None:intergenic |
| CGCGTTAGTAAATCGACTGT+TGG | 0.501184 | 8.2:+4502275 | MS.gene060334:CDS |
| ATCAATGGAAGAGGTTCCAC+AGG | 0.501640 | 8.2:+4502634 | MS.gene060334:CDS |
| GAAGATTAGGATGCACTAAC+GGG | 0.503183 | 8.2:-4502859 | None:intergenic |
| TAGAGATAATACCTCTGAAT+CGG | 0.505324 | 8.2:-4501694 | None:intergenic |
| CCCAACTTGAAGGAAAGGCT+TGG | 0.506916 | 8.2:+4502212 | MS.gene060334:CDS |
| TTTGATTTCATTCCACACTC+TGG | 0.514952 | 8.2:+4501555 | MS.gene060334:CDS |
| GAAGAGGTTCCACAGGGGAA+GGG | 0.517831 | 8.2:+4502641 | MS.gene060334:CDS |
| TTATCCCCAACTTGAAGGAA+AGG | 0.520815 | 8.2:+4502207 | MS.gene060334:CDS |
| TAACTAAATTTGTGAACAGT+GGG | 0.524393 | 8.2:-4501966 | None:intergenic |
| TGGAATGAAATCAAAATCTC+CGG | 0.524479 | 8.2:-4501547 | None:intergenic |
| CAAGCCTTTCCTTCAAGTTG+GGG | 0.529315 | 8.2:-4502211 | None:intergenic |
| AACATCCTTGCCGGAAGAAG+AGG | 0.530642 | 8.2:-4501514 | None:intergenic |
| GGTTCCACAGGGGAAGGGGA+AGG | 0.533194 | 8.2:+4502646 | MS.gene060334:CDS |
| ATCAGATATTGAAGCAATGA+CGG | 0.536024 | 8.2:-4502504 | None:intergenic |
| GGTTTGGTTGATGCTATTGG+TGG | 0.540573 | 8.2:+4502698 | MS.gene060334:CDS |
| TATTCTTTGAAAGAAACAAA+AGG | 0.543012 | 8.2:-4502248 | None:intergenic |
| TGGACTAAAAGAACCAACTA+AGG | 0.544447 | 8.2:-4502591 | None:intergenic |
| AGAAGATTAGGATGCACTAA+CGG | 0.547063 | 8.2:-4502860 | None:intergenic |
| AATATCCAAAATTTGAACAC+TGG | 0.547788 | 8.2:+4501780 | MS.gene060334:CDS |
| TCAGATATTGAAGCAATGAC+GGG | 0.551209 | 8.2:-4502503 | None:intergenic |
| ATACCTCTGAATCGGTGTGT+AGG | 0.552557 | 8.2:-4501686 | None:intergenic |
| CACCCTGTCCAACTTTACCC+TGG | 0.555639 | 8.2:+4502801 | MS.gene060334:CDS |
| GTTTGGTTGATGCTATTGGT+GGG | 0.556402 | 8.2:+4502699 | MS.gene060334:CDS |
| GGTAAGGACGCAACATCTCT+CGG | 0.557645 | 8.2:+4502677 | MS.gene060334:CDS |
| CACCCTACACACCGATTCAG+AGG | 0.558538 | 8.2:+4501683 | MS.gene060334:CDS |
| TGAATCGGTGTGTAGGGTGT+CGG | 0.562552 | 8.2:-4501679 | None:intergenic |
| TCCAACTTTACCCTGGGAGG+AGG | 0.565785 | 8.2:+4502808 | MS.gene060334:CDS |
| GATGTAGTATCTTCTTCCAC+CGG | 0.568021 | 8.2:+4502071 | MS.gene060334:CDS |
| AGTAGAAGAACTCAAAGAAG+AGG | 0.568425 | 8.2:+4502151 | MS.gene060334:CDS |
| GTCACAGCGTTCATCTCTCA+TGG | 0.568866 | 8.2:+4501320 | MS.gene060334:CDS |
| AGACCCTGAGACTCGAATGA+TGG | 0.571972 | 8.2:-4502327 | None:intergenic |
| AATGAACCTCAACAAAAGGA+TGG | 0.572223 | 8.2:-4501935 | None:intergenic |
| CTCGTGCGGTAGAATTTGAG+GGG | 0.580670 | 8.2:-4501378 | None:intergenic |
| CTGCTAGCACTCCCCTCAGA+GGG | 0.583729 | 8.2:+4501609 | MS.gene060334:CDS |
| ACCCTGTCCAACTTTACCCT+GGG | 0.586996 | 8.2:+4502802 | MS.gene060334:CDS |
| AGCAGGTGATATACAGCGAT+CGG | 0.592109 | 8.2:-4501343 | None:intergenic |
| GTAGAAGAACTCAAAGAAGA+GGG | 0.593743 | 8.2:+4502152 | MS.gene060334:CDS |
| TAGGGTGTCGGATATTATGC+CGG | 0.594782 | 8.2:-4501667 | None:intergenic |
| ATGAAATCAAAATCTCCGGT+TGG | 0.594805 | 8.2:-4501543 | None:intergenic |
| TACTTCTTCAAGCCAGAGTG+TGG | 0.594882 | 8.2:-4501567 | None:intergenic |
| TTAATGCAGTTGTTGTCTCG+TGG | 0.598388 | 8.2:-4502022 | None:intergenic |
| ATCGACTGTTGGAATATCAA+GGG | 0.598413 | 8.2:+4502286 | MS.gene060334:CDS |
| CATTGCTTCAATATCTGATG+TGG | 0.601190 | 8.2:+4502508 | MS.gene060334:CDS |
| TTAAATTCCTCCTCCTCCCA+GGG | 0.602774 | 8.2:-4502818 | None:intergenic |
| ATGAACCTCAACAAAAGGAT+GGG | 0.602807 | 8.2:-4501934 | None:intergenic |
| GGGGAAGGTTTGGACTGGTA+AGG | 0.604771 | 8.2:+4502661 | MS.gene060334:CDS |
| TAGCCATCATTCGAGTCTCA+GGG | 0.606571 | 8.2:+4502324 | MS.gene060334:CDS |
| CGATCAATAATAGAAGATGA+TGG | 0.608918 | 8.2:-4501417 | None:intergenic |
| TGCAGGATACTACTTAGCAA+CGG | 0.610387 | 8.2:+4502538 | MS.gene060334:CDS |
| CGGAAGAAGAGGAAAATAAG+TGG | 0.613550 | 8.2:-4501503 | None:intergenic |
| ATAATAGAAGATGATGGTGG+CGG | 0.619265 | 8.2:-4501411 | None:intergenic |
| GTAAACTAGATGAAATTCGA+AGG | 0.619983 | 8.2:+4501808 | MS.gene060334:CDS |
| GTCCGAATTGACAGTTCAGG+AGG | 0.622572 | 8.2:+4502422 | MS.gene060334:CDS |
| AGGGTCTATCAGTAGTGCAA+CGG | 0.633641 | 8.2:+4502343 | MS.gene060334:CDS |
| ATAACTAAATTTGTGAACAG+TGG | 0.633712 | 8.2:-4501967 | None:intergenic |
| CAACTTGAAGGAAAGGCTTG+GGG | 0.634279 | 8.2:+4502214 | MS.gene060334:CDS |
| GGGAAGGGGAAGGTTTGGAC+TGG | 0.637451 | 8.2:+4502656 | MS.gene060334:CDS |
| CAAACCTTCCCCTTCCCCTG+TGG | 0.650489 | 8.2:-4502650 | None:intergenic |
| TCCCAGGGTAAAGTTGGACA+GGG | 0.651519 | 8.2:-4502803 | None:intergenic |
| CAATATACCTCAAAATGGTG+AGG | 0.660377 | 8.2:+4502757 | MS.gene060334:CDS |
| TCAATGGAAGAGGTTCCACA+GGG | 0.668896 | 8.2:+4502635 | MS.gene060334:CDS |
| ATAAATACGAGGATCATACA+TGG | 0.669117 | 8.2:-4501745 | None:intergenic |
| TCTGCTAGCACTCCCCTCAG+AGG | 0.672433 | 8.2:+4501608 | MS.gene060334:CDS |
| CTGTCCAACTTTACCCTGGG+AGG | 0.673818 | 8.2:+4502805 | MS.gene060334:CDS |
| GCGGTGATATTGCGCTCGTG+CGG | 0.694021 | 8.2:-4501392 | None:intergenic |
| TCAATAATAGAAGATGATGG+TGG | 0.696702 | 8.2:-4501414 | None:intergenic |
| AGATATACAACATAAATACG+AGG | 0.759908 | 8.2:-4501756 | None:intergenic |
| CAATGGAAGAGGTTCCACAG+GGG | 0.794420 | 8.2:+4502636 | MS.gene060334:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATTGAGAATATATAT+AGG | + | chr8.2:4502366-4502385 | MS.gene060334:CDS | 15.0% |
| !! | CACAAATTTAGTTATATTAA+GGG | + | chr8.2:4501975-4501994 | MS.gene060334:CDS | 15.0% |
| !! | GTTTATTGAGAATATATATA+GGG | + | chr8.2:4502367-4502386 | MS.gene060334:CDS | 15.0% |
| !! | TCACAAATTTAGTTATATTA+AGG | + | chr8.2:4501974-4501993 | MS.gene060334:CDS | 15.0% |
| !!! | AAATTGAATTTTTTGTGAAT+CGG | - | chr8.2:4501459-4501478 | None:intergenic | 15.0% |
| !! | ATCTTAAATTTCAGAAAATC+AGG | + | chr8.2:4501834-4501853 | MS.gene060334:CDS | 20.0% |
| !! | GATTCACAAAAAATTCAATT+TGG | + | chr8.2:4501458-4501477 | MS.gene060334:CDS | 20.0% |
| !! | TGGATAATATTTACTCAAAT+TGG | + | chr8.2:4502045-4502064 | MS.gene060334:CDS | 20.0% |
| !!! | TATTCTTTGAAAGAAACAAA+AGG | - | chr8.2:4502251-4502270 | None:intergenic | 20.0% |
| ! | AACAAATTATCGCAAATTTG+AGG | - | chr8.2:4501720-4501739 | None:intergenic | 25.0% |
| ! | AATATCCAAAATTTGAACAC+TGG | + | chr8.2:4501780-4501799 | MS.gene060334:CDS | 25.0% |
| ! | AGATATACAACATAAATACG+AGG | - | chr8.2:4501759-4501778 | None:intergenic | 25.0% |
| ! | ATAACTAAATTTGTGAACAG+TGG | - | chr8.2:4501970-4501989 | None:intergenic | 25.0% |
| ! | CACAAAAAATTCAATTTGGA+AGG | + | chr8.2:4501462-4501481 | MS.gene060334:CDS | 25.0% |
| ! | TAACTAAATTTGTGAACAGT+GGG | - | chr8.2:4501969-4501988 | None:intergenic | 25.0% |
| ! | TATTGCTATAGCAAAATTGA+AGG | + | chr8.2:4502733-4502752 | MS.gene060334:CDS | 25.0% |
| ! | TTGGAAAAGGATCTATTATT+TGG | - | chr8.2:4502614-4502633 | None:intergenic | 25.0% |
| ! | TTGGTTAACTTTGTAACTAA+AGG | + | chr8.2:4502119-4502138 | MS.gene060334:CDS | 25.0% |
| AAGAGAAAATGTCGAAAACT+TGG | + | chr8.2:4502100-4502119 | MS.gene060334:CDS | 30.0% | |
| AATTTGGAAGGTAAGATTTC+TGG | + | chr8.2:4501474-4501493 | MS.gene060334:CDS | 30.0% | |
| AGGAGGAATTTAATCTTCTT+TGG | + | chr8.2:4502828-4502847 | MS.gene060334:CDS | 30.0% | |
| ATAAATACGAGGATCATACA+TGG | - | chr8.2:4501748-4501767 | None:intergenic | 30.0% | |
| ATCAGATATTGAAGCAATGA+CGG | - | chr8.2:4502507-4502526 | None:intergenic | 30.0% | |
| CGATCAATAATAGAAGATGA+TGG | - | chr8.2:4501420-4501439 | None:intergenic | 30.0% | |
| GTAAACTAGATGAAATTCGA+AGG | + | chr8.2:4501808-4501827 | MS.gene060334:CDS | 30.0% | |
| GTTCTTCAAATCAATTTGTC+CGG | + | chr8.2:4501648-4501667 | MS.gene060334:CDS | 30.0% | |
| TACAAATGAACCTCAACAAA+AGG | - | chr8.2:4501942-4501961 | None:intergenic | 30.0% | |
| TAGAGATAATACCTCTGAAT+CGG | - | chr8.2:4501697-4501716 | None:intergenic | 30.0% | |
| TGGAATGAAATCAAAATCTC+CGG | - | chr8.2:4501550-4501569 | None:intergenic | 30.0% | |
| TTTGTTGAGGTTCATTTGTA+TGG | + | chr8.2:4501942-4501961 | MS.gene060334:CDS | 30.0% | |
| ! | ACTCTTTTACTCCAATTTCA+GGG | - | chr8.2:4501881-4501900 | None:intergenic | 30.0% |
| ! | GACATTTTCTCTTTTCTTTC+CGG | - | chr8.2:4502093-4502112 | None:intergenic | 30.0% |
| ! | TACTCTTTTACTCCAATTTC+AGG | - | chr8.2:4501882-4501901 | None:intergenic | 30.0% |
| ! | TAGATCCTTTTCCAAATCAA+TGG | + | chr8.2:4502619-4502638 | MS.gene060334:CDS | 30.0% |
| ! | TCAATAATAGAAGATGATGG+TGG | - | chr8.2:4501417-4501436 | None:intergenic | 30.0% |
| !! | CATAACGGATTTGCTATATA+GGG | + | chr8.2:4502178-4502197 | MS.gene060334:CDS | 30.0% |
| !! | TCATAACGGATTTGCTATAT+AGG | + | chr8.2:4502177-4502196 | MS.gene060334:CDS | 30.0% |
| AAGGCCAATATACCTCAAAA+TGG | + | chr8.2:4502752-4502771 | MS.gene060334:CDS | 35.0% | |
| AAGTTGTGACCAAGAAGATT+AGG | - | chr8.2:4502875-4502894 | None:intergenic | 35.0% | |
| AATCGACTGTTGGAATATCA+AGG | + | chr8.2:4502285-4502304 | MS.gene060334:CDS | 35.0% | |
| AATGAACCTCAACAAAAGGA+TGG | - | chr8.2:4501938-4501957 | None:intergenic | 35.0% | |
| ACAGTTCAGGAGGTAAATTT+CGG | + | chr8.2:4502432-4502451 | MS.gene060334:CDS | 35.0% | |
| AGAAGATTAGGATGCACTAA+CGG | - | chr8.2:4502863-4502882 | None:intergenic | 35.0% | |
| AGTAGAAGAACTCAAAGAAG+AGG | + | chr8.2:4502151-4502170 | MS.gene060334:CDS | 35.0% | |
| ATCGACTGTTGGAATATCAA+GGG | + | chr8.2:4502286-4502305 | MS.gene060334:CDS | 35.0% | |
| ATGAAATCAAAATCTCCGGT+TGG | - | chr8.2:4501546-4501565 | None:intergenic | 35.0% | |
| ATGAACCTCAACAAAAGGAT+GGG | - | chr8.2:4501937-4501956 | None:intergenic | 35.0% | |
| CAAAGAAGAGGGTTTCATAA+CGG | + | chr8.2:4502163-4502182 | MS.gene060334:CDS | 35.0% | |
| CAATATACCTCAAAATGGTG+AGG | + | chr8.2:4502757-4502776 | MS.gene060334:CDS | 35.0% | |
| CAGATCATCAACAGAATTCA+AGG | + | chr8.2:4502391-4502410 | MS.gene060334:CDS | 35.0% | |
| CATTGCTTCAATATCTGATG+TGG | + | chr8.2:4502508-4502527 | MS.gene060334:CDS | 35.0% | |
| GAATTTGAGGGGTTTATGAA+TGG | - | chr8.2:4501370-4501389 | None:intergenic | 35.0% | |
| GCAGAAAATCTTACCTTAGT+TGG | + | chr8.2:4502578-4502597 | MS.gene060334:CDS | 35.0% | |
| GTAGAAGAACTCAAAGAAGA+GGG | + | chr8.2:4502152-4502171 | MS.gene060334:CDS | 35.0% | |
| TCAGATATTGAAGCAATGAC+GGG | - | chr8.2:4502506-4502525 | None:intergenic | 35.0% | |
| TCCAAAATTTGAACACTGGT+TGG | + | chr8.2:4501784-4501803 | MS.gene060334:CDS | 35.0% | |
| TGATATTATCCCCAACTTGA+AGG | + | chr8.2:4502202-4502221 | MS.gene060334:CDS | 35.0% | |
| TGGACTAAAAGAACCAACTA+AGG | - | chr8.2:4502594-4502613 | None:intergenic | 35.0% | |
| TTAGTGCATCCTAATCTTCT+TGG | + | chr8.2:4502863-4502882 | MS.gene060334:CDS | 35.0% | |
| TTCGGGCATCTAATTATATG+TGG | + | chr8.2:4502450-4502469 | MS.gene060334:CDS | 35.0% | |
| TTTGCTTATGTCCCTGAAAT+TGG | + | chr8.2:4501867-4501886 | MS.gene060334:CDS | 35.0% | |
| ! | AAGGATGTTGATTATCCAAC+CGG | + | chr8.2:4501528-4501547 | MS.gene060334:CDS | 35.0% |
| ! | ATTTTCTCTTTTCTTTCCGG+TGG | - | chr8.2:4502090-4502109 | None:intergenic | 35.0% |
| ! | CAAAATTTGAACACTGGTTG+GGG | + | chr8.2:4501786-4501805 | MS.gene060334:CDS | 35.0% |
| ! | CCAAAATTTGAACACTGGTT+GGG | + | chr8.2:4501785-4501804 | MS.gene060334:CDS | 35.0% |
| ! | CTTTTCCAAATCAATGGAAG+AGG | + | chr8.2:4502625-4502644 | MS.gene060334:CDS | 35.0% |
| ! | TTTGATTTCATTCCACACTC+TGG | + | chr8.2:4501555-4501574 | MS.gene060334:CDS | 35.0% |
| !! | ATAATAGAAGATGATGGTGG+CGG | - | chr8.2:4501414-4501433 | None:intergenic | 35.0% |
| !! | CACTTATTTTCCTCTTCTTC+CGG | + | chr8.2:4501504-4501523 | MS.gene060334:CDS | 35.0% |
| !! | CTCTTCCATTGATTTGGAAA+AGG | - | chr8.2:4502627-4502646 | None:intergenic | 35.0% |
| !!! | CTCACCATTTTGAGGTATAT+TGG | - | chr8.2:4502759-4502778 | None:intergenic | 35.0% |
| ATTGTCCGAATTGACAGTTC+AGG | + | chr8.2:4502419-4502438 | MS.gene060334:CDS | 40.0% | |
| CAGTTCAGGAGGTAAATTTC+GGG | + | chr8.2:4502433-4502452 | MS.gene060334:CDS | 40.0% | |
| CGAGACAACAACTGCATTAA+TGG | + | chr8.2:4502025-4502044 | MS.gene060334:CDS | 40.0% | |
| CGGAAGAAGAGGAAAATAAG+TGG | - | chr8.2:4501506-4501525 | None:intergenic | 40.0% | |
| GAAGATTAGGATGCACTAAC+GGG | - | chr8.2:4502862-4502881 | None:intergenic | 40.0% | |
| GATGTAGTATCTTCTTCCAC+CGG | + | chr8.2:4502071-4502090 | MS.gene060334:CDS | 40.0% | |
| TACCTCCTGAACTGTCAATT+CGG | - | chr8.2:4502427-4502446 | None:intergenic | 40.0% | |
| TGCAGGATACTACTTAGCAA+CGG | + | chr8.2:4502538-4502557 | MS.gene060334:CDS | 40.0% | |
| TGGATAATCAACATCCTTGC+CGG | - | chr8.2:4501526-4501545 | None:intergenic | 40.0% | |
| TTAATGCAGTTGTTGTCTCG+TGG | - | chr8.2:4502025-4502044 | None:intergenic | 40.0% | |
| TTATCCCCAACTTGAAGGAA+AGG | + | chr8.2:4502207-4502226 | MS.gene060334:CDS | 40.0% | |
| ! | AGAGTAACCTCACCATTTTG+AGG | - | chr8.2:4502767-4502786 | None:intergenic | 40.0% |
| ! | ATATGCCCATCCTTTTGTTG+AGG | + | chr8.2:4501929-4501948 | MS.gene060334:CDS | 40.0% |
| ! | CCCAACCAGTGTTCAAATTT+TGG | - | chr8.2:4501788-4501807 | None:intergenic | 40.0% |
| ! | GTTTGGTTGATGCTATTGGT+GGG | + | chr8.2:4502699-4502718 | MS.gene060334:CDS | 40.0% |
| ! | TGGAACCTCTTCCATTGATT+TGG | - | chr8.2:4502633-4502652 | None:intergenic | 40.0% |
| !!! | TGAAGCAATGACGGGTTTTT+CGG | - | chr8.2:4502498-4502517 | None:intergenic | 40.0% |
| AGCAGGTGATATACAGCGAT+CGG | - | chr8.2:4501346-4501365 | None:intergenic | 45.0% | |
| AGGGGTTTATGAATGGTAGC+AGG | - | chr8.2:4501363-4501382 | None:intergenic | 45.0% | |
| AGGGTCTATCAGTAGTGCAA+CGG | + | chr8.2:4502343-4502362 | MS.gene060334:CDS | 45.0% | |
| ATACCTCTGAATCGGTGTGT+AGG | - | chr8.2:4501689-4501708 | None:intergenic | 45.0% | |
| ATAGCCATCATTCGAGTCTC+AGG | + | chr8.2:4502323-4502342 | MS.gene060334:CDS | 45.0% | |
| ATCAATGGAAGAGGTTCCAC+AGG | + | chr8.2:4502634-4502653 | MS.gene060334:CDS | 45.0% | |
| ATTAAATTCCTCCTCCTCCC+AGG | - | chr8.2:4502822-4502841 | None:intergenic | 45.0% | |
| CAACTTGAAGGAAAGGCTTG+GGG | + | chr8.2:4502214-4502233 | MS.gene060334:CDS | 45.0% | |
| CCAACTTGAAGGAAAGGCTT+GGG | + | chr8.2:4502213-4502232 | MS.gene060334:CDS | 45.0% | |
| CGCGTTAGTAAATCGACTGT+TGG | + | chr8.2:4502275-4502294 | MS.gene060334:CDS | 45.0% | |
| GCAGGATACTACTTAGCAAC+GGG | + | chr8.2:4502539-4502558 | MS.gene060334:CDS | 45.0% | |
| TACCTCTGAATCGGTGTGTA+GGG | - | chr8.2:4501688-4501707 | None:intergenic | 45.0% | |
| TACTTCTTCAAGCCAGAGTG+TGG | - | chr8.2:4501570-4501589 | None:intergenic | 45.0% | |
| TAGCCATCATTCGAGTCTCA+GGG | + | chr8.2:4502324-4502343 | MS.gene060334:CDS | 45.0% | |
| TCAATGGAAGAGGTTCCACA+GGG | + | chr8.2:4502635-4502654 | MS.gene060334:CDS | 45.0% | |
| TTAAATTCCTCCTCCTCCCA+GGG | - | chr8.2:4502821-4502840 | None:intergenic | 45.0% | |
| ! | ATTTTCCTCTTCTTCCGGCA+AGG | + | chr8.2:4501509-4501528 | MS.gene060334:CDS | 45.0% |
| ! | CCAAGCCTTTCCTTCAAGTT+GGG | - | chr8.2:4502215-4502234 | None:intergenic | 45.0% |
| ! | CGTTTTTAACACCCTCTGAG+GGG | - | chr8.2:4501623-4501642 | None:intergenic | 45.0% |
| ! | GGTTTGGTTGATGCTATTGG+TGG | + | chr8.2:4502698-4502717 | MS.gene060334:CDS | 45.0% |
| !! | CAAGCCTTTCCTTCAAGTTG+GGG | - | chr8.2:4502214-4502233 | None:intergenic | 45.0% |
| !! | CCCTCAGAGGGTGTTAAAAA+CGG | + | chr8.2:4501621-4501640 | MS.gene060334:CDS | 45.0% |
| !! | CCGTTTTTAACACCCTCTGA+GGG | - | chr8.2:4501624-4501643 | None:intergenic | 45.0% |
| !! | CTCGGTTTGGTTGATGCTAT+TGG | + | chr8.2:4502695-4502714 | MS.gene060334:CDS | 45.0% |
| !! | CTCTGGCTTGAAGAAGTATC+TGG | + | chr8.2:4501572-4501591 | MS.gene060334:CDS | 45.0% |
| !! | TAGGGTGTCGGATATTATGC+CGG | - | chr8.2:4501670-4501689 | None:intergenic | 45.0% |
| AACATCCTTGCCGGAAGAAG+AGG | - | chr8.2:4501517-4501536 | None:intergenic | 50.0% | |
| ACCCTGTCCAACTTTACCCT+GGG | + | chr8.2:4502802-4502821 | MS.gene060334:CDS | 50.0% | |
| AGACCCTGAGACTCGAATGA+TGG | - | chr8.2:4502330-4502349 | None:intergenic | 50.0% | |
| CAATGGAAGAGGTTCCACAG+GGG | + | chr8.2:4502636-4502655 | MS.gene060334:CDS | 50.0% | |
| CCCAACTTGAAGGAAAGGCT+TGG | + | chr8.2:4502212-4502231 | MS.gene060334:CDS | 50.0% | |
| CCCAAGCCTTTCCTTCAAGT+TGG | - | chr8.2:4502216-4502235 | None:intergenic | 50.0% | |
| CTCGTGCGGTAGAATTTGAG+GGG | - | chr8.2:4501381-4501400 | None:intergenic | 50.0% | |
| GCTCGTGCGGTAGAATTTGA+GGG | - | chr8.2:4501382-4501401 | None:intergenic | 50.0% | |
| GGTAAGGACGCAACATCTCT+CGG | + | chr8.2:4502677-4502696 | MS.gene060334:CDS | 50.0% | |
| GTCACAGCGTTCATCTCTCA+TGG | + | chr8.2:4501320-4501339 | MS.gene060334:CDS | 50.0% | |
| GTCCGAATTGACAGTTCAGG+AGG | + | chr8.2:4502422-4502441 | MS.gene060334:CDS | 50.0% | |
| TACTACTTAGCAACGGGAGC+AGG | + | chr8.2:4502545-4502564 | MS.gene060334:CDS | 50.0% | |
| TCCCAGGGTAAAGTTGGACA+GGG | - | chr8.2:4502806-4502825 | None:intergenic | 50.0% | |
| TCTGATGTGGCAACAAGTGC+AGG | + | chr8.2:4502521-4502540 | MS.gene060334:CDS | 50.0% | |
| TGAATCGGTGTGTAGGGTGT+CGG | - | chr8.2:4501682-4501701 | None:intergenic | 50.0% | |
| !!! | GCCGTTTTTAACACCCTCTG+AGG | - | chr8.2:4501625-4501644 | None:intergenic | 50.0% |
| AACTTTACCCTGGGAGGAGG+AGG | + | chr8.2:4502811-4502830 | MS.gene060334:CDS | 55.0% | |
| AAGAGGTTCCACAGGGGAAG+GGG | + | chr8.2:4502642-4502661 | MS.gene060334:CDS | 55.0% | |
| CACCCTGTCCAACTTTACCC+TGG | + | chr8.2:4502801-4502820 | MS.gene060334:CDS | 55.0% | |
| CGCTCGTGCGGTAGAATTTG+AGG | - | chr8.2:4501383-4501402 | None:intergenic | 55.0% | |
| CTCCCAGGGTAAAGTTGGAC+AGG | - | chr8.2:4502807-4502826 | None:intergenic | 55.0% | |
| CTGTCCAACTTTACCCTGGG+AGG | + | chr8.2:4502805-4502824 | MS.gene060334:CDS | 55.0% | |
| GAAGAGGTTCCACAGGGGAA+GGG | + | chr8.2:4502641-4502660 | MS.gene060334:CDS | 55.0% | |
| GGACGCAACATCTCTCGGTT+TGG | + | chr8.2:4502682-4502701 | MS.gene060334:CDS | 55.0% | |
| TCCAACTTTACCCTGGGAGG+AGG | + | chr8.2:4502808-4502827 | MS.gene060334:CDS | 55.0% | |
| TCCTCCTCCCAGGGTAAAGT+TGG | - | chr8.2:4502812-4502831 | None:intergenic | 55.0% | |
| !! | CACCCTACACACCGATTCAG+AGG | + | chr8.2:4501683-4501702 | MS.gene060334:CDS | 55.0% |
| !! | GGGGAAGGTTTGGACTGGTA+AGG | + | chr8.2:4502661-4502680 | MS.gene060334:CDS | 55.0% |
| CAAACCTTCCCCTTCCCCTG+TGG | - | chr8.2:4502653-4502672 | None:intergenic | 60.0% | |
| CACAGGGGAAGGGGAAGGTT+TGG | + | chr8.2:4502651-4502670 | MS.gene060334:CDS | 60.0% | |
| CTGCTAGCACTCCCCTCAGA+GGG | + | chr8.2:4501609-4501628 | MS.gene060334:CDS | 60.0% | |
| GCGGTGATATTGCGCTCGTG+CGG | - | chr8.2:4501395-4501414 | None:intergenic | 60.0% | |
| GGAAGAGGTTCCACAGGGGA+AGG | + | chr8.2:4502640-4502659 | MS.gene060334:CDS | 60.0% | |
| GGGAAGGGGAAGGTTTGGAC+TGG | + | chr8.2:4502656-4502675 | MS.gene060334:CDS | 60.0% | |
| TCTGCTAGCACTCCCCTCAG+AGG | + | chr8.2:4501608-4501627 | MS.gene060334:CDS | 60.0% | |
| GGTTCCACAGGGGAAGGGGA+AGG | + | chr8.2:4502646-4502665 | MS.gene060334:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 4501318 | 4502913 | 4501318 | ID=MS.gene060334 |
| chr8.2 | mRNA | 4501318 | 4502913 | 4501318 | ID=MS.gene060334.t1;Parent=MS.gene060334 |
| chr8.2 | exon | 4501318 | 4502913 | 4501318 | ID=MS.gene060334.t1.exon1;Parent=MS.gene060334.t1 |
| chr8.2 | CDS | 4501318 | 4502913 | 4501318 | ID=cds.MS.gene060334.t1;Parent=MS.gene060334.t1 |
| Gene Sequence |
| Protein sequence |
