Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060332.t1 | XP_024636611.1 | 64.9 | 490 | 70 | 7 | 1 | 408 | 8 | 477 | 4.30E-150 | 541.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060332.t1 | Q9C9C0 | 46.7 | 345 | 100 | 7 | 131 | 397 | 276 | 614 | 1.8e-64 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060332.t1 | G7JFI3 | 60.5 | 483 | 77 | 6 | 1 | 408 | 20 | 463 | 8.3e-135 | 490.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060134 | MS.gene060332 | 0.859713 | 3.42E-63 | -1.69E-46 |
| MS.gene060135 | MS.gene060332 | 0.893386 | 6.60E-75 | -1.69E-46 |
| MS.gene060332 | MS.gene060334 | 0.890482 | 9.47E-74 | -1.69E-46 |
| MS.gene060332 | MS.gene57879 | 0.896332 | 4.08E-76 | -1.69E-46 |
| MS.gene060332 | MS.gene58067 | 0.885675 | 6.63E-72 | -1.69E-46 |
| MS.gene060332 | MS.gene58069 | 0.875489 | 2.96E-68 | -1.69E-46 |
| MS.gene060332 | MS.gene58206 | 0.900975 | 4.28E-78 | -1.69E-46 |
| MS.gene060332 | MS.gene58216 | 0.860722 | 1.69E-63 | -1.69E-46 |
| MS.gene060332 | MS.gene58295 | 0.815213 | 1.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060332.t1 | MTR_4g130360 | 71.302 | 338 | 67 | 4 | 73 | 408 | 154 | 463 | 3.34e-164 | 470 |
| MS.gene060332.t1 | MTR_4g130360 | 72.897 | 107 | 9 | 2 | 1 | 107 | 20 | 106 | 1.09e-29 | 120 |
| MS.gene060332.t1 | MTR_4g112860 | 50.581 | 344 | 86 | 8 | 132 | 397 | 259 | 596 | 8.05e-91 | 288 |
| MS.gene060332.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 5.98e-14 | 74.3 |
| MS.gene060332.t1 | MTR_2g058970 | 48.127 | 347 | 96 | 8 | 129 | 397 | 268 | 608 | 5.33e-82 | 265 |
| MS.gene060332.t1 | MTR_5g025810 | 43.142 | 401 | 133 | 13 | 67 | 396 | 35 | 411 | 1.91e-78 | 253 |
| MS.gene060332.t1 | MTR_4g112820 | 46.855 | 318 | 92 | 10 | 132 | 389 | 185 | 485 | 3.28e-72 | 235 |
| MS.gene060332.t1 | MTR_4g112860 | 57.619 | 210 | 69 | 4 | 132 | 325 | 259 | 464 | 5.35e-67 | 221 |
| MS.gene060332.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 3.91e-14 | 74.3 |
| MS.gene060332.t1 | MTR_4g112860 | 53.279 | 244 | 92 | 5 | 132 | 357 | 259 | 498 | 5.73e-67 | 224 |
| MS.gene060332.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 4.02e-14 | 74.7 |
| MS.gene060332.t1 | MTR_5g082990 | 51.136 | 264 | 77 | 9 | 131 | 361 | 65 | 309 | 9.00e-65 | 213 |
| MS.gene060332.t1 | MTR_8g022470 | 46.441 | 295 | 121 | 9 | 132 | 393 | 27 | 317 | 9.12e-65 | 211 |
| MS.gene060332.t1 | MTR_4g114810 | 41.772 | 316 | 60 | 9 | 133 | 397 | 179 | 421 | 2.09e-49 | 175 |
| MS.gene060332.t1 | MTR_4g134260 | 44.444 | 243 | 116 | 5 | 173 | 397 | 135 | 376 | 2.68e-49 | 173 |
| MS.gene060332.t1 | MTR_5g083100 | 43.852 | 244 | 99 | 8 | 151 | 391 | 37 | 245 | 7.67e-43 | 156 |
| MS.gene060332.t1 | MTR_4g123500 | 34.853 | 307 | 143 | 8 | 133 | 390 | 142 | 440 | 2.21e-39 | 147 |
| MS.gene060332.t1 | MTR_8g022500 | 47.030 | 202 | 48 | 4 | 246 | 390 | 226 | 425 | 4.23e-39 | 147 |
| MS.gene060332.t1 | MTR_4g133130 | 46.392 | 194 | 54 | 5 | 229 | 390 | 50 | 225 | 5.31e-35 | 136 |
| MS.gene060332.t1 | MTR_4g112860 | 50.345 | 145 | 52 | 4 | 132 | 260 | 259 | 399 | 4.68e-33 | 129 |
| MS.gene060332.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 3.15e-14 | 74.3 |
| MS.gene060332.t1 | MTR_4g130550 | 44.304 | 79 | 44 | 0 | 248 | 326 | 68 | 146 | 9.99e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060332.t1 | AT1G73990 | 41.983 | 343 | 119 | 7 | 131 | 397 | 276 | 614 | 5.42e-64 | 218 |
| MS.gene060332.t1 | AT1G73990 | 50.204 | 245 | 100 | 5 | 131 | 357 | 276 | 516 | 1.37e-61 | 210 |
Find 112 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAAAGGATCTATTATT+TGG | 0.128131 | 8.4:-4743499 | None:intergenic |
| CGAGACAACAACTGCATTAA+TGG | 0.184426 | 8.4:+4742913 | MS.gene060332:CDS |
| TGGATAATATTTACTCAAAT+TGG | 0.197209 | 8.4:+4742933 | MS.gene060332:CDS |
| AATTTGGAAGGTAAGATTTC+TGG | 0.242205 | 8.4:+4742362 | MS.gene060332:CDS |
| TGGAACCTCTTCCATTGATT+TGG | 0.252339 | 8.4:-4743518 | None:intergenic |
| AGGAGGAATTTAATCTTCTT+TGG | 0.260660 | 8.4:+4743716 | MS.gene060332:CDS |
| CTCGGTTTGGTTGATGCTAT+TGG | 0.265550 | 8.4:+4743583 | MS.gene060332:CDS |
| TCATAACGGATTTGCTATAT+AGG | 0.286656 | 8.4:+4743065 | MS.gene060332:CDS |
| CAGTTCAGGAGGTAAATTTC+GGG | 0.292898 | 8.4:+4743321 | MS.gene060332:CDS |
| CCAAGCCTTTCCTTCAAGTT+GGG | 0.324316 | 8.4:-4743100 | None:intergenic |
| TTAGTGCATCCTAATCTTCT+TGG | 0.333889 | 8.4:+4743751 | MS.gene060332:CDS |
| ACAGTTCAGGAGGTAAATTT+CGG | 0.345303 | 8.4:+4743320 | MS.gene060332:CDS |
| GCAGAAAATCTTACCTTAGT+TGG | 0.347938 | 8.4:+4743466 | MS.gene060332:CDS |
| ATAGCCATCATTCGAGTCTC+AGG | 0.356408 | 8.4:+4743211 | MS.gene060332:CDS |
| CACAGGGGAAGGGGAAGGTT+TGG | 0.359665 | 8.4:+4743539 | MS.gene060332:CDS |
| CATAACGGATTTGCTATATA+GGG | 0.361873 | 8.4:+4743066 | MS.gene060332:CDS |
| CGCTCGTGCGGTAGAATTTG+AGG | 0.386162 | 8.4:-4742268 | None:intergenic |
| AAGGCCAATATACCTCAAAA+TGG | 0.388556 | 8.4:+4743640 | MS.gene060332:CDS |
| AGTTTATTGAGAATATATAT+AGG | 0.390012 | 8.4:+4743254 | MS.gene060332:CDS |
| CCCAAGCCTTTCCTTCAAGT+TGG | 0.390394 | 8.4:-4743101 | None:intergenic |
| GTTTATTGAGAATATATATA+GGG | 0.396139 | 8.4:+4743255 | MS.gene060332:CDS |
| CTCTGGCTTGAAGAAGTATC+TGG | 0.400164 | 8.4:+4742460 | MS.gene060332:CDS |
| CTCTTCCATTGATTTGGAAA+AGG | 0.400283 | 8.4:-4743512 | None:intergenic |
| ATTGTCCGAATTGACAGTTC+AGG | 0.411636 | 8.4:+4743307 | MS.gene060332:CDS |
| TTGGTTAACTTTGTAACTAA+AGG | 0.412796 | 8.4:+4743007 | MS.gene060332:CDS |
| CCAACTTGAAGGAAAGGCTT+GGG | 0.422842 | 8.4:+4743101 | MS.gene060332:CDS |
| TGGATAATCAACATCCTTGC+CGG | 0.434812 | 8.4:-4742411 | None:intergenic |
| GCTCGTGCGGTAGAATTTGA+GGG | 0.437753 | 8.4:-4742267 | None:intergenic |
| CTCCCAGGGTAAAGTTGGAC+AGG | 0.443050 | 8.4:-4743692 | None:intergenic |
| TACCTCCTGAACTGTCAATT+CGG | 0.443292 | 8.4:-4743312 | None:intergenic |
| GTTCTTCAAATCAATTTGTC+CGG | 0.445006 | 8.4:+4742536 | MS.gene060332:CDS |
| TCCTCCTCCCAGGGTAAAGT+TGG | 0.446367 | 8.4:-4743697 | None:intergenic |
| GAATTTGAGGGGTTTATGAA+TGG | 0.450237 | 8.4:-4742255 | None:intergenic |
| GGAAGAGGTTCCACAGGGGA+AGG | 0.463372 | 8.4:+4743528 | MS.gene060332:CDS |
| AAGAGGTTCCACAGGGGAAG+GGG | 0.467563 | 8.4:+4743530 | MS.gene060332:CDS |
| CAGATCATCAACAGAATTCA+AGG | 0.474665 | 8.4:+4743279 | MS.gene060332:CDS |
| ATTAAATTCCTCCTCCTCCC+AGG | 0.476401 | 8.4:-4743707 | None:intergenic |
| AGGGGTTTATGAATGGTAGC+AGG | 0.476548 | 8.4:-4742248 | None:intergenic |
| AAGAGAAAATGTCGAAAACT+TGG | 0.476552 | 8.4:+4742988 | MS.gene060332:CDS |
| AAGGATGTTGATTATCCAAC+CGG | 0.477750 | 8.4:+4742416 | MS.gene060332:CDS |
| AAGTTGTGACCAAGAAGATT+AGG | 0.481987 | 8.4:-4743760 | None:intergenic |
| AACTTTACCCTGGGAGGAGG+AGG | 0.483757 | 8.4:+4743699 | MS.gene060332:CDS |
| GCAGGATACTACTTAGCAAC+GGG | 0.485513 | 8.4:+4743427 | MS.gene060332:CDS |
| CAAAGAAGAGGGTTTCATAA+CGG | 0.489037 | 8.4:+4743051 | MS.gene060332:CDS |
| TACTACTTAGCAACGGGAGC+AGG | 0.490304 | 8.4:+4743433 | MS.gene060332:CDS |
| GGACGCAACATCTCTCGGTT+TGG | 0.491111 | 8.4:+4743570 | MS.gene060332:CDS |
| TTCGGGCATCTAATTATATG+TGG | 0.492637 | 8.4:+4743338 | MS.gene060332:CDS |
| TCTGATGTGGCAACAAGTGC+AGG | 0.494828 | 8.4:+4743409 | MS.gene060332:CDS |
| AATCGACTGTTGGAATATCA+AGG | 0.496160 | 8.4:+4743173 | MS.gene060332:CDS |
| TGATATTATCCCCAACTTGA+AGG | 0.496185 | 8.4:+4743090 | MS.gene060332:CDS |
| TGTTACTGCATTATTCGTAA+AGG | 0.500089 | 8.4:+4743782 | MS.gene060332:CDS |
| TATTGCTATAGCAAAATTGA+AGG | 0.500409 | 8.4:+4743621 | MS.gene060332:CDS |
| TACCTCTGAATCGGTGTGTA+GGG | 0.501142 | 8.4:-4742573 | None:intergenic |
| CGCGTTAGTAAATCGACTGT+TGG | 0.501184 | 8.4:+4743163 | MS.gene060332:CDS |
| ATCAATGGAAGAGGTTCCAC+AGG | 0.501640 | 8.4:+4743522 | MS.gene060332:CDS |
| GAAGATTAGGATGCACTAAC+GGG | 0.503183 | 8.4:-4743747 | None:intergenic |
| TAGAGATAATACCTCTGAAT+CGG | 0.505324 | 8.4:-4742582 | None:intergenic |
| CCCAACTTGAAGGAAAGGCT+TGG | 0.506916 | 8.4:+4743100 | MS.gene060332:CDS |
| TTTGATTTCATTCCACACTC+TGG | 0.514952 | 8.4:+4742443 | MS.gene060332:CDS |
| GAAGAGGTTCCACAGGGGAA+GGG | 0.517831 | 8.4:+4743529 | MS.gene060332:CDS |
| TTATCCCCAACTTGAAGGAA+AGG | 0.520815 | 8.4:+4743095 | MS.gene060332:CDS |
| TGGAATGAAATCAAAATCTC+CGG | 0.524479 | 8.4:-4742435 | None:intergenic |
| CAAGCCTTTCCTTCAAGTTG+GGG | 0.529315 | 8.4:-4743099 | None:intergenic |
| AACATCCTTGCCGGAAGAAG+AGG | 0.530642 | 8.4:-4742402 | None:intergenic |
| GGTTCCACAGGGGAAGGGGA+AGG | 0.533194 | 8.4:+4743534 | MS.gene060332:CDS |
| ATCAGATATTGAAGCAATGA+CGG | 0.536024 | 8.4:-4743392 | None:intergenic |
| GGTTTGGTTGATGCTATTGG+TGG | 0.540573 | 8.4:+4743586 | MS.gene060332:CDS |
| TATTCTTTGAAAGAAACAAA+AGG | 0.543012 | 8.4:-4743136 | None:intergenic |
| TGGACTAAAAGAACCAACTA+AGG | 0.544447 | 8.4:-4743479 | None:intergenic |
| AGAAGATTAGGATGCACTAA+CGG | 0.547063 | 8.4:-4743748 | None:intergenic |
| TCAGATATTGAAGCAATGAC+GGG | 0.551209 | 8.4:-4743391 | None:intergenic |
| ATACCTCTGAATCGGTGTGT+AGG | 0.552557 | 8.4:-4742574 | None:intergenic |
| CACCCTGTCCAACTTTACCC+TGG | 0.555639 | 8.4:+4743689 | MS.gene060332:CDS |
| GTTTGGTTGATGCTATTGGT+GGG | 0.556402 | 8.4:+4743587 | MS.gene060332:CDS |
| GGTAAGGACGCAACATCTCT+CGG | 0.557645 | 8.4:+4743565 | MS.gene060332:CDS |
| CACCCTACACACCGATTCAG+AGG | 0.558538 | 8.4:+4742571 | MS.gene060332:CDS |
| TGAATCGGTGTGTAGGGTGT+CGG | 0.562552 | 8.4:-4742567 | None:intergenic |
| TCCAACTTTACCCTGGGAGG+AGG | 0.565785 | 8.4:+4743696 | MS.gene060332:CDS |
| GATGTAGTATCTTCTTCCAC+CGG | 0.568021 | 8.4:+4742959 | MS.gene060332:CDS |
| AGTAGAAGAACTCAAAGAAG+AGG | 0.568425 | 8.4:+4743039 | MS.gene060332:CDS |
| AGACCCTGAGACTCGAATGA+TGG | 0.571972 | 8.4:-4743215 | None:intergenic |
| CTCGTGCGGTAGAATTTGAG+GGG | 0.580670 | 8.4:-4742266 | None:intergenic |
| CTGCTAGCACTCCCCTCAGA+GGG | 0.583729 | 8.4:+4742497 | MS.gene060332:CDS |
| ACCCTGTCCAACTTTACCCT+GGG | 0.586996 | 8.4:+4743690 | MS.gene060332:CDS |
| AGCAGGTGATATACAGCGAT+CGG | 0.592109 | 8.4:-4742231 | None:intergenic |
| GTAGAAGAACTCAAAGAAGA+GGG | 0.593743 | 8.4:+4743040 | MS.gene060332:CDS |
| TAGGGTGTCGGATATTATGC+CGG | 0.594782 | 8.4:-4742555 | None:intergenic |
| ATGAAATCAAAATCTCCGGT+TGG | 0.594805 | 8.4:-4742431 | None:intergenic |
| TACTTCTTCAAGCCAGAGTG+TGG | 0.594882 | 8.4:-4742455 | None:intergenic |
| TTAATGCAGTTGTTGTCTCG+TGG | 0.598388 | 8.4:-4742910 | None:intergenic |
| ATCGACTGTTGGAATATCAA+GGG | 0.598413 | 8.4:+4743174 | MS.gene060332:CDS |
| CATTGCTTCAATATCTGATG+TGG | 0.601190 | 8.4:+4743396 | MS.gene060332:CDS |
| TTAAATTCCTCCTCCTCCCA+GGG | 0.602774 | 8.4:-4743706 | None:intergenic |
| GGGGAAGGTTTGGACTGGTA+AGG | 0.604771 | 8.4:+4743549 | MS.gene060332:CDS |
| TAGCCATCATTCGAGTCTCA+GGG | 0.606571 | 8.4:+4743212 | MS.gene060332:CDS |
| CGATCAATAATAGAAGATGA+TGG | 0.608918 | 8.4:-4742305 | None:intergenic |
| TGCAGGATACTACTTAGCAA+CGG | 0.610387 | 8.4:+4743426 | MS.gene060332:CDS |
| CGGAAGAAGAGGAAAATAAG+TGG | 0.613550 | 8.4:-4742391 | None:intergenic |
| ATAATAGAAGATGATGGTGG+CGG | 0.619265 | 8.4:-4742299 | None:intergenic |
| GTCCGAATTGACAGTTCAGG+AGG | 0.622572 | 8.4:+4743310 | MS.gene060332:CDS |
| AGGGTCTATCAGTAGTGCAA+CGG | 0.633641 | 8.4:+4743231 | MS.gene060332:CDS |
| CAACTTGAAGGAAAGGCTTG+GGG | 0.634279 | 8.4:+4743102 | MS.gene060332:CDS |
| GGGAAGGGGAAGGTTTGGAC+TGG | 0.637451 | 8.4:+4743544 | MS.gene060332:CDS |
| CAAACCTTCCCCTTCCCCTG+TGG | 0.650489 | 8.4:-4743538 | None:intergenic |
| TCCCAGGGTAAAGTTGGACA+GGG | 0.651519 | 8.4:-4743691 | None:intergenic |
| CAATATACCTCAAAATGGTG+AGG | 0.660377 | 8.4:+4743645 | MS.gene060332:CDS |
| TCAATGGAAGAGGTTCCACA+GGG | 0.668896 | 8.4:+4743523 | MS.gene060332:CDS |
| TCTGCTAGCACTCCCCTCAG+AGG | 0.672433 | 8.4:+4742496 | MS.gene060332:CDS |
| CTGTCCAACTTTACCCTGGG+AGG | 0.673818 | 8.4:+4743693 | MS.gene060332:CDS |
| GCGGTGATATTGCGCTCGTG+CGG | 0.694021 | 8.4:-4742280 | None:intergenic |
| TCAATAATAGAAGATGATGG+TGG | 0.696702 | 8.4:-4742302 | None:intergenic |
| CAATGGAAGAGGTTCCACAG+GGG | 0.794420 | 8.4:+4743524 | MS.gene060332:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATTGAGAATATATAT+AGG | + | chr8.4:4743254-4743273 | MS.gene060332:CDS | 15.0% |
| !! | CACAAATTTAGTTATATTAA+GGG | + | chr8.4:4742863-4742882 | MS.gene060332:intron | 15.0% |
| !! | GTTTATTGAGAATATATATA+GGG | + | chr8.4:4743255-4743274 | MS.gene060332:CDS | 15.0% |
| !! | TCACAAATTTAGTTATATTA+AGG | + | chr8.4:4742862-4742881 | MS.gene060332:intron | 15.0% |
| !!! | AAATTGAATTTTTTGTGAAT+CGG | - | chr8.4:4742347-4742366 | None:intergenic | 15.0% |
| !! | ATCTTAAATTTCAGAAAATC+AGG | + | chr8.4:4742722-4742741 | MS.gene060332:intron | 20.0% |
| !! | GATTCACAAAAAATTCAATT+TGG | + | chr8.4:4742346-4742365 | MS.gene060332:CDS | 20.0% |
| !! | TGGATAATATTTACTCAAAT+TGG | + | chr8.4:4742933-4742952 | MS.gene060332:CDS | 20.0% |
| !!! | TATTCTTTGAAAGAAACAAA+AGG | - | chr8.4:4743139-4743158 | None:intergenic | 20.0% |
| ! | AACAAATTATCGCAAATTTG+AGG | - | chr8.4:4742608-4742627 | None:intergenic | 25.0% |
| ! | AATATCCAAAATTTGAACAC+TGG | + | chr8.4:4742668-4742687 | MS.gene060332:intron | 25.0% |
| ! | AGATATACAACATAAATACG+AGG | - | chr8.4:4742647-4742666 | None:intergenic | 25.0% |
| ! | ATAACTAAATTTGTGAACAG+TGG | - | chr8.4:4742858-4742877 | None:intergenic | 25.0% |
| ! | CACAAAAAATTCAATTTGGA+AGG | + | chr8.4:4742350-4742369 | MS.gene060332:CDS | 25.0% |
| ! | TAACTAAATTTGTGAACAGT+GGG | - | chr8.4:4742857-4742876 | None:intergenic | 25.0% |
| ! | TATTGCTATAGCAAAATTGA+AGG | + | chr8.4:4743621-4743640 | MS.gene060332:CDS | 25.0% |
| ! | TTGGAAAAGGATCTATTATT+TGG | - | chr8.4:4743502-4743521 | None:intergenic | 25.0% |
| ! | TTGGTTAACTTTGTAACTAA+AGG | + | chr8.4:4743007-4743026 | MS.gene060332:CDS | 25.0% |
| AAGAGAAAATGTCGAAAACT+TGG | + | chr8.4:4742988-4743007 | MS.gene060332:CDS | 30.0% | |
| AATTTGGAAGGTAAGATTTC+TGG | + | chr8.4:4742362-4742381 | MS.gene060332:CDS | 30.0% | |
| AGGAGGAATTTAATCTTCTT+TGG | + | chr8.4:4743716-4743735 | MS.gene060332:CDS | 30.0% | |
| ATAAATACGAGGATCATACA+TGG | - | chr8.4:4742636-4742655 | None:intergenic | 30.0% | |
| ATCAGATATTGAAGCAATGA+CGG | - | chr8.4:4743395-4743414 | None:intergenic | 30.0% | |
| CGATCAATAATAGAAGATGA+TGG | - | chr8.4:4742308-4742327 | None:intergenic | 30.0% | |
| GTAAACTAGATGAAATTCGA+AGG | + | chr8.4:4742696-4742715 | MS.gene060332:intron | 30.0% | |
| GTTCTTCAAATCAATTTGTC+CGG | + | chr8.4:4742536-4742555 | MS.gene060332:CDS | 30.0% | |
| TACAAATGAACCTCAACAAA+AGG | - | chr8.4:4742830-4742849 | None:intergenic | 30.0% | |
| TAGAGATAATACCTCTGAAT+CGG | - | chr8.4:4742585-4742604 | None:intergenic | 30.0% | |
| TGGAATGAAATCAAAATCTC+CGG | - | chr8.4:4742438-4742457 | None:intergenic | 30.0% | |
| TTTGTTGAGGTTCATTTGTA+TGG | + | chr8.4:4742830-4742849 | MS.gene060332:intron | 30.0% | |
| ! | ACTCTTTTACTCCAATTTCA+GGG | - | chr8.4:4742769-4742788 | None:intergenic | 30.0% |
| ! | GACATTTTCTCTTTTCTTTC+CGG | - | chr8.4:4742981-4743000 | None:intergenic | 30.0% |
| ! | TACTCTTTTACTCCAATTTC+AGG | - | chr8.4:4742770-4742789 | None:intergenic | 30.0% |
| ! | TAGATCCTTTTCCAAATCAA+TGG | + | chr8.4:4743507-4743526 | MS.gene060332:CDS | 30.0% |
| ! | TCAATAATAGAAGATGATGG+TGG | - | chr8.4:4742305-4742324 | None:intergenic | 30.0% |
| !! | CATAACGGATTTGCTATATA+GGG | + | chr8.4:4743066-4743085 | MS.gene060332:CDS | 30.0% |
| !! | TCATAACGGATTTGCTATAT+AGG | + | chr8.4:4743065-4743084 | MS.gene060332:CDS | 30.0% |
| AAGGCCAATATACCTCAAAA+TGG | + | chr8.4:4743640-4743659 | MS.gene060332:CDS | 35.0% | |
| AAGTTGTGACCAAGAAGATT+AGG | - | chr8.4:4743763-4743782 | None:intergenic | 35.0% | |
| AATCGACTGTTGGAATATCA+AGG | + | chr8.4:4743173-4743192 | MS.gene060332:CDS | 35.0% | |
| AATGAACCTCAACAAAAGGA+TGG | - | chr8.4:4742826-4742845 | None:intergenic | 35.0% | |
| ACAGTTCAGGAGGTAAATTT+CGG | + | chr8.4:4743320-4743339 | MS.gene060332:CDS | 35.0% | |
| AGAAGATTAGGATGCACTAA+CGG | - | chr8.4:4743751-4743770 | None:intergenic | 35.0% | |
| AGTAGAAGAACTCAAAGAAG+AGG | + | chr8.4:4743039-4743058 | MS.gene060332:CDS | 35.0% | |
| ATCGACTGTTGGAATATCAA+GGG | + | chr8.4:4743174-4743193 | MS.gene060332:CDS | 35.0% | |
| ATGAAATCAAAATCTCCGGT+TGG | - | chr8.4:4742434-4742453 | None:intergenic | 35.0% | |
| ATGAACCTCAACAAAAGGAT+GGG | - | chr8.4:4742825-4742844 | None:intergenic | 35.0% | |
| CAAAGAAGAGGGTTTCATAA+CGG | + | chr8.4:4743051-4743070 | MS.gene060332:CDS | 35.0% | |
| CAATATACCTCAAAATGGTG+AGG | + | chr8.4:4743645-4743664 | MS.gene060332:CDS | 35.0% | |
| CAGATCATCAACAGAATTCA+AGG | + | chr8.4:4743279-4743298 | MS.gene060332:CDS | 35.0% | |
| CATTGCTTCAATATCTGATG+TGG | + | chr8.4:4743396-4743415 | MS.gene060332:CDS | 35.0% | |
| GAATTTGAGGGGTTTATGAA+TGG | - | chr8.4:4742258-4742277 | None:intergenic | 35.0% | |
| GCAGAAAATCTTACCTTAGT+TGG | + | chr8.4:4743466-4743485 | MS.gene060332:CDS | 35.0% | |
| GTAGAAGAACTCAAAGAAGA+GGG | + | chr8.4:4743040-4743059 | MS.gene060332:CDS | 35.0% | |
| TCAGATATTGAAGCAATGAC+GGG | - | chr8.4:4743394-4743413 | None:intergenic | 35.0% | |
| TCCAAAATTTGAACACTGGT+TGG | + | chr8.4:4742672-4742691 | MS.gene060332:intron | 35.0% | |
| TGATATTATCCCCAACTTGA+AGG | + | chr8.4:4743090-4743109 | MS.gene060332:CDS | 35.0% | |
| TGGACTAAAAGAACCAACTA+AGG | - | chr8.4:4743482-4743501 | None:intergenic | 35.0% | |
| TTAGTGCATCCTAATCTTCT+TGG | + | chr8.4:4743751-4743770 | MS.gene060332:CDS | 35.0% | |
| TTCGGGCATCTAATTATATG+TGG | + | chr8.4:4743338-4743357 | MS.gene060332:CDS | 35.0% | |
| TTTGCTTATGTCCCTGAAAT+TGG | + | chr8.4:4742755-4742774 | MS.gene060332:intron | 35.0% | |
| ! | AAGGATGTTGATTATCCAAC+CGG | + | chr8.4:4742416-4742435 | MS.gene060332:CDS | 35.0% |
| ! | ATTTTCTCTTTTCTTTCCGG+TGG | - | chr8.4:4742978-4742997 | None:intergenic | 35.0% |
| ! | CAAAATTTGAACACTGGTTG+GGG | + | chr8.4:4742674-4742693 | MS.gene060332:intron | 35.0% |
| ! | CCAAAATTTGAACACTGGTT+GGG | + | chr8.4:4742673-4742692 | MS.gene060332:intron | 35.0% |
| ! | CTTTTCCAAATCAATGGAAG+AGG | + | chr8.4:4743513-4743532 | MS.gene060332:CDS | 35.0% |
| ! | TTTGATTTCATTCCACACTC+TGG | + | chr8.4:4742443-4742462 | MS.gene060332:CDS | 35.0% |
| !! | ATAATAGAAGATGATGGTGG+CGG | - | chr8.4:4742302-4742321 | None:intergenic | 35.0% |
| !! | CACTTATTTTCCTCTTCTTC+CGG | + | chr8.4:4742392-4742411 | MS.gene060332:CDS | 35.0% |
| !! | CTCTTCCATTGATTTGGAAA+AGG | - | chr8.4:4743515-4743534 | None:intergenic | 35.0% |
| !!! | CTCACCATTTTGAGGTATAT+TGG | - | chr8.4:4743647-4743666 | None:intergenic | 35.0% |
| ATTGTCCGAATTGACAGTTC+AGG | + | chr8.4:4743307-4743326 | MS.gene060332:CDS | 40.0% | |
| CAGTTCAGGAGGTAAATTTC+GGG | + | chr8.4:4743321-4743340 | MS.gene060332:CDS | 40.0% | |
| CGAGACAACAACTGCATTAA+TGG | + | chr8.4:4742913-4742932 | MS.gene060332:CDS | 40.0% | |
| CGGAAGAAGAGGAAAATAAG+TGG | - | chr8.4:4742394-4742413 | None:intergenic | 40.0% | |
| GAAGATTAGGATGCACTAAC+GGG | - | chr8.4:4743750-4743769 | None:intergenic | 40.0% | |
| GATGTAGTATCTTCTTCCAC+CGG | + | chr8.4:4742959-4742978 | MS.gene060332:CDS | 40.0% | |
| TACCTCCTGAACTGTCAATT+CGG | - | chr8.4:4743315-4743334 | None:intergenic | 40.0% | |
| TGCAGGATACTACTTAGCAA+CGG | + | chr8.4:4743426-4743445 | MS.gene060332:CDS | 40.0% | |
| TGGATAATCAACATCCTTGC+CGG | - | chr8.4:4742414-4742433 | None:intergenic | 40.0% | |
| TTAATGCAGTTGTTGTCTCG+TGG | - | chr8.4:4742913-4742932 | None:intergenic | 40.0% | |
| TTATCCCCAACTTGAAGGAA+AGG | + | chr8.4:4743095-4743114 | MS.gene060332:CDS | 40.0% | |
| ! | AGAGTAACCTCACCATTTTG+AGG | - | chr8.4:4743655-4743674 | None:intergenic | 40.0% |
| ! | ATATGCCCATCCTTTTGTTG+AGG | + | chr8.4:4742817-4742836 | MS.gene060332:intron | 40.0% |
| ! | CCCAACCAGTGTTCAAATTT+TGG | - | chr8.4:4742676-4742695 | None:intergenic | 40.0% |
| ! | GTTTGGTTGATGCTATTGGT+GGG | + | chr8.4:4743587-4743606 | MS.gene060332:CDS | 40.0% |
| ! | TGGAACCTCTTCCATTGATT+TGG | - | chr8.4:4743521-4743540 | None:intergenic | 40.0% |
| !!! | TGAAGCAATGACGGGTTTTT+CGG | - | chr8.4:4743386-4743405 | None:intergenic | 40.0% |
| AGCAGGTGATATACAGCGAT+CGG | - | chr8.4:4742234-4742253 | None:intergenic | 45.0% | |
| AGGGGTTTATGAATGGTAGC+AGG | - | chr8.4:4742251-4742270 | None:intergenic | 45.0% | |
| AGGGTCTATCAGTAGTGCAA+CGG | + | chr8.4:4743231-4743250 | MS.gene060332:CDS | 45.0% | |
| ATACCTCTGAATCGGTGTGT+AGG | - | chr8.4:4742577-4742596 | None:intergenic | 45.0% | |
| ATAGCCATCATTCGAGTCTC+AGG | + | chr8.4:4743211-4743230 | MS.gene060332:CDS | 45.0% | |
| ATCAATGGAAGAGGTTCCAC+AGG | + | chr8.4:4743522-4743541 | MS.gene060332:CDS | 45.0% | |
| ATTAAATTCCTCCTCCTCCC+AGG | - | chr8.4:4743710-4743729 | None:intergenic | 45.0% | |
| CAACTTGAAGGAAAGGCTTG+GGG | + | chr8.4:4743102-4743121 | MS.gene060332:CDS | 45.0% | |
| CCAACTTGAAGGAAAGGCTT+GGG | + | chr8.4:4743101-4743120 | MS.gene060332:CDS | 45.0% | |
| CGCGTTAGTAAATCGACTGT+TGG | + | chr8.4:4743163-4743182 | MS.gene060332:CDS | 45.0% | |
| GCAGGATACTACTTAGCAAC+GGG | + | chr8.4:4743427-4743446 | MS.gene060332:CDS | 45.0% | |
| TACCTCTGAATCGGTGTGTA+GGG | - | chr8.4:4742576-4742595 | None:intergenic | 45.0% | |
| TACTTCTTCAAGCCAGAGTG+TGG | - | chr8.4:4742458-4742477 | None:intergenic | 45.0% | |
| TAGCCATCATTCGAGTCTCA+GGG | + | chr8.4:4743212-4743231 | MS.gene060332:CDS | 45.0% | |
| TCAATGGAAGAGGTTCCACA+GGG | + | chr8.4:4743523-4743542 | MS.gene060332:CDS | 45.0% | |
| TTAAATTCCTCCTCCTCCCA+GGG | - | chr8.4:4743709-4743728 | None:intergenic | 45.0% | |
| ! | ATTTTCCTCTTCTTCCGGCA+AGG | + | chr8.4:4742397-4742416 | MS.gene060332:CDS | 45.0% |
| ! | CCAAGCCTTTCCTTCAAGTT+GGG | - | chr8.4:4743103-4743122 | None:intergenic | 45.0% |
| ! | CGTTTTTAACACCCTCTGAG+GGG | - | chr8.4:4742511-4742530 | None:intergenic | 45.0% |
| ! | GGTTTGGTTGATGCTATTGG+TGG | + | chr8.4:4743586-4743605 | MS.gene060332:CDS | 45.0% |
| !! | CAAGCCTTTCCTTCAAGTTG+GGG | - | chr8.4:4743102-4743121 | None:intergenic | 45.0% |
| !! | CCCTCAGAGGGTGTTAAAAA+CGG | + | chr8.4:4742509-4742528 | MS.gene060332:CDS | 45.0% |
| !! | CCGTTTTTAACACCCTCTGA+GGG | - | chr8.4:4742512-4742531 | None:intergenic | 45.0% |
| !! | CTCGGTTTGGTTGATGCTAT+TGG | + | chr8.4:4743583-4743602 | MS.gene060332:CDS | 45.0% |
| !! | CTCTGGCTTGAAGAAGTATC+TGG | + | chr8.4:4742460-4742479 | MS.gene060332:CDS | 45.0% |
| !! | TAGGGTGTCGGATATTATGC+CGG | - | chr8.4:4742558-4742577 | None:intergenic | 45.0% |
| AACATCCTTGCCGGAAGAAG+AGG | - | chr8.4:4742405-4742424 | None:intergenic | 50.0% | |
| ACCCTGTCCAACTTTACCCT+GGG | + | chr8.4:4743690-4743709 | MS.gene060332:CDS | 50.0% | |
| AGACCCTGAGACTCGAATGA+TGG | - | chr8.4:4743218-4743237 | None:intergenic | 50.0% | |
| CAATGGAAGAGGTTCCACAG+GGG | + | chr8.4:4743524-4743543 | MS.gene060332:CDS | 50.0% | |
| CCCAACTTGAAGGAAAGGCT+TGG | + | chr8.4:4743100-4743119 | MS.gene060332:CDS | 50.0% | |
| CCCAAGCCTTTCCTTCAAGT+TGG | - | chr8.4:4743104-4743123 | None:intergenic | 50.0% | |
| CTCGTGCGGTAGAATTTGAG+GGG | - | chr8.4:4742269-4742288 | None:intergenic | 50.0% | |
| GCTCGTGCGGTAGAATTTGA+GGG | - | chr8.4:4742270-4742289 | None:intergenic | 50.0% | |
| GGTAAGGACGCAACATCTCT+CGG | + | chr8.4:4743565-4743584 | MS.gene060332:CDS | 50.0% | |
| GTCCGAATTGACAGTTCAGG+AGG | + | chr8.4:4743310-4743329 | MS.gene060332:CDS | 50.0% | |
| TACTACTTAGCAACGGGAGC+AGG | + | chr8.4:4743433-4743452 | MS.gene060332:CDS | 50.0% | |
| TCCCAGGGTAAAGTTGGACA+GGG | - | chr8.4:4743694-4743713 | None:intergenic | 50.0% | |
| TCTGATGTGGCAACAAGTGC+AGG | + | chr8.4:4743409-4743428 | MS.gene060332:CDS | 50.0% | |
| TGAATCGGTGTGTAGGGTGT+CGG | - | chr8.4:4742570-4742589 | None:intergenic | 50.0% | |
| !!! | GCCGTTTTTAACACCCTCTG+AGG | - | chr8.4:4742513-4742532 | None:intergenic | 50.0% |
| AACTTTACCCTGGGAGGAGG+AGG | + | chr8.4:4743699-4743718 | MS.gene060332:CDS | 55.0% | |
| AAGAGGTTCCACAGGGGAAG+GGG | + | chr8.4:4743530-4743549 | MS.gene060332:CDS | 55.0% | |
| CACCCTGTCCAACTTTACCC+TGG | + | chr8.4:4743689-4743708 | MS.gene060332:CDS | 55.0% | |
| CGCTCGTGCGGTAGAATTTG+AGG | - | chr8.4:4742271-4742290 | None:intergenic | 55.0% | |
| CTCCCAGGGTAAAGTTGGAC+AGG | - | chr8.4:4743695-4743714 | None:intergenic | 55.0% | |
| CTGTCCAACTTTACCCTGGG+AGG | + | chr8.4:4743693-4743712 | MS.gene060332:CDS | 55.0% | |
| GAAGAGGTTCCACAGGGGAA+GGG | + | chr8.4:4743529-4743548 | MS.gene060332:CDS | 55.0% | |
| GGACGCAACATCTCTCGGTT+TGG | + | chr8.4:4743570-4743589 | MS.gene060332:CDS | 55.0% | |
| TCCAACTTTACCCTGGGAGG+AGG | + | chr8.4:4743696-4743715 | MS.gene060332:CDS | 55.0% | |
| TCCTCCTCCCAGGGTAAAGT+TGG | - | chr8.4:4743700-4743719 | None:intergenic | 55.0% | |
| !! | CACCCTACACACCGATTCAG+AGG | + | chr8.4:4742571-4742590 | MS.gene060332:CDS | 55.0% |
| !! | GGGGAAGGTTTGGACTGGTA+AGG | + | chr8.4:4743549-4743568 | MS.gene060332:CDS | 55.0% |
| CAAACCTTCCCCTTCCCCTG+TGG | - | chr8.4:4743541-4743560 | None:intergenic | 60.0% | |
| CACAGGGGAAGGGGAAGGTT+TGG | + | chr8.4:4743539-4743558 | MS.gene060332:CDS | 60.0% | |
| CTGCTAGCACTCCCCTCAGA+GGG | + | chr8.4:4742497-4742516 | MS.gene060332:CDS | 60.0% | |
| GCGGTGATATTGCGCTCGTG+CGG | - | chr8.4:4742283-4742302 | None:intergenic | 60.0% | |
| GGAAGAGGTTCCACAGGGGA+AGG | + | chr8.4:4743528-4743547 | MS.gene060332:CDS | 60.0% | |
| GGGAAGGGGAAGGTTTGGAC+TGG | + | chr8.4:4743544-4743563 | MS.gene060332:CDS | 60.0% | |
| TCTGCTAGCACTCCCCTCAG+AGG | + | chr8.4:4742496-4742515 | MS.gene060332:CDS | 60.0% | |
| GGTTCCACAGGGGAAGGGGA+AGG | + | chr8.4:4743534-4743553 | MS.gene060332:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 4742227 | 4743801 | 4742227 | ID=MS.gene060332 |
| chr8.4 | mRNA | 4742227 | 4743801 | 4742227 | ID=MS.gene060332.t1;Parent=MS.gene060332 |
| chr8.4 | exon | 4742227 | 4742592 | 4742227 | ID=MS.gene060332.t1.exon1;Parent=MS.gene060332.t1 |
| chr8.4 | CDS | 4742227 | 4742592 | 4742227 | ID=cds.MS.gene060332.t1;Parent=MS.gene060332.t1 |
| chr8.4 | exon | 4742884 | 4743801 | 4742884 | ID=MS.gene060332.t1.exon2;Parent=MS.gene060332.t1 |
| chr8.4 | CDS | 4742884 | 4743801 | 4742884 | ID=cds.MS.gene060332.t1;Parent=MS.gene060332.t1 |
| Gene Sequence |
| Protein sequence |
