Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58222.t1 | XP_003610252.1 | 73.2 | 127 | 8 | 2 | 1 | 105 | 29 | 151 | 3.30E-39 | 171 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58222.t1 | Q6NYP0 | 37.4 | 99 | 37 | 4 | 2 | 78 | 36 | 131 | 1.2e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58222.t1 | G7JED5 | 73.2 | 127 | 8 | 2 | 1 | 105 | 29 | 151 | 2.4e-39 | 171.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060134 | MS.gene58222 | 0.808741 | 2.67E-50 | -1.69E-46 |
| MS.gene060135 | MS.gene58222 | 0.80067 | 1.29E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58222.t1 | MTR_4g130180 | 73.228 | 127 | 8 | 2 | 1 | 105 | 29 | 151 | 1.80e-57 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58222.t1 | AT2G23940 | 57.143 | 133 | 31 | 2 | 1 | 111 | 29 | 157 | 2.29e-46 | 147 |
| MS.gene58222.t1 | AT2G23940 | 57.143 | 133 | 31 | 2 | 1 | 111 | 29 | 157 | 2.29e-46 | 147 |
| MS.gene58222.t1 | AT2G23940 | 57.143 | 133 | 31 | 2 | 1 | 111 | 29 | 157 | 2.29e-46 | 147 |
| MS.gene58222.t1 | AT4G30500 | 54.887 | 133 | 34 | 2 | 1 | 111 | 29 | 157 | 1.26e-43 | 140 |
Find 27 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCCTTTGGCTTGATTAA+AGG | 0.155831 | 8.2:+4824787 | MS.gene58222:CDS |
| AGGTTATTTATGTAGTAATT+AGG | 0.244944 | 8.2:+4822691 | None:intergenic |
| GTCCTTGACAAACTTAGGTT+TGG | 0.351814 | 8.2:-4824979 | None:intergenic |
| ATCTAAAAGTTCACCGTCTT+CGG | 0.382362 | 8.2:-4822830 | None:intergenic |
| CCATCATCTCTGGAAAGTTC+TGG | 0.397340 | 8.2:+4823737 | MS.gene58222:CDS |
| TTTGGAGCATACCAATCCTT+TGG | 0.411793 | 8.2:+4824775 | MS.gene58222:CDS |
| ACATGTCAGATACCAGCATT+TGG | 0.452980 | 8.2:+4824757 | MS.gene58222:intron |
| ATGACCCTGGTGGAGTTTGC+GGG | 0.453163 | 8.2:+4822865 | MS.gene58222:CDS |
| CAAGTCGCTTCCATCATCTC+TGG | 0.460619 | 8.2:+4823727 | MS.gene58222:CDS |
| TCAATGCTTCCAGGTGAAGC+TGG | 0.462797 | 8.2:-4822730 | None:intergenic |
| GAGGGAAAAGATGGAGAAGA+AGG | 0.464994 | 8.2:+4824953 | MS.gene58222:CDS |
| TGAAAAGACCCCGCAAGAAG+AGG | 0.473639 | 8.2:+4824934 | MS.gene58222:CDS |
| CCAGAACTTTCCAGAGATGA+TGG | 0.477172 | 8.2:-4823737 | None:intergenic |
| TATGACCCTGGTGGAGTTTG+CGG | 0.491331 | 8.2:+4822864 | MS.gene58222:CDS |
| GCTTCCAGGTGAAGCTGGAA+TGG | 0.500511 | 8.2:-4822725 | None:intergenic |
| CCGCAAGAAGAGGGAAAAGA+TGG | 0.502355 | 8.2:+4824944 | MS.gene58222:CDS |
| GAAAAGACCCCGCAAGAAGA+GGG | 0.506545 | 8.2:+4824935 | MS.gene58222:CDS |
| GATTGGTATGCTCCAAATGC+TGG | 0.509174 | 8.2:-4824769 | None:intergenic |
| TCTTCCATTCCAGCTTCACC+TGG | 0.510288 | 8.2:+4822721 | MS.gene58222:CDS |
| TCATACCCGCAAACTCCACC+AGG | 0.518406 | 8.2:-4822870 | None:intergenic |
| TCACCGTCTTCGGTATAGCT+AGG | 0.541241 | 8.2:-4822820 | None:intergenic |
| CTTTAATCAAGCCAAAGGAT+TGG | 0.550609 | 8.2:-4824786 | None:intergenic |
| AAATCCTTTAATCAAGCCAA+AGG | 0.579388 | 8.2:-4824791 | None:intergenic |
| AAGCCTAGCTATACCGAAGA+CGG | 0.617809 | 8.2:+4822817 | MS.gene58222:CDS |
| GTTCTGGTACATATATCTTG+TGG | 0.618251 | 8.2:+4823753 | MS.gene58222:CDS |
| GACCATACCTCTGAACCTTG+TGG | 0.656239 | 8.2:-4824817 | None:intergenic |
| CATACCCGCAAACTCCACCA+GGG | 0.775894 | 8.2:-4822869 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTCTTTTAATTATTAATAAA+GGG | - | chr8.2:4824698-4824717 | None:intergenic | 10.0% |
| !!! | TAAAGTTAAAATTTTATCTT+GGG | + | chr8.2:4822947-4822966 | MS.gene58222:intron | 10.0% |
| !!! | TCTCTTTTAATTATTAATAA+AGG | - | chr8.2:4824699-4824718 | None:intergenic | 10.0% |
| !!! | TTAAAGTTAAAATTTTATCT+TGG | + | chr8.2:4822946-4822965 | MS.gene58222:intron | 10.0% |
| !! | GTTTATTTATGAATTATATC+AGG | + | chr8.2:4824539-4824558 | MS.gene58222:intron | 15.0% |
| !! | TTAAAGTTGTAATCAATATT+GGG | + | chr8.2:4824652-4824671 | MS.gene58222:intron | 15.0% |
| !!! | TCCATAAACTTATTTTAATA+GGG | + | chr8.2:4823151-4823170 | MS.gene58222:intron | 15.0% |
| !! | ATATTGGGACATATATAAAA+TGG | + | chr8.2:4824667-4824686 | MS.gene58222:intron | 20.0% |
| !! | GTTAAAGTTGTAATCAATAT+TGG | + | chr8.2:4824651-4824670 | MS.gene58222:intron | 20.0% |
| !! | TCCCTATTAAAATAAGTTTA+TGG | - | chr8.2:4823155-4823174 | None:intergenic | 20.0% |
| !!! | AACCAGTAAGTATATATTTT+TGG | - | chr8.2:4824628-4824647 | None:intergenic | 20.0% |
| !!! | CTCCATAAACTTATTTTAAT+AGG | + | chr8.2:4823150-4823169 | MS.gene58222:intron | 20.0% |
| ! | ACTAATTATTTGCCATAAAG+AGG | + | chr8.2:4823977-4823996 | MS.gene58222:intron | 25.0% |
| ! | AGGGAAGTAAAAAATTGTAT+TGG | + | chr8.2:4824115-4824134 | MS.gene58222:intron | 25.0% |
| ! | AGTAAATCTAATGAACCTTT+AGG | - | chr8.2:4824355-4824374 | None:intergenic | 25.0% |
| ! | ATAAAGATCTATCATCTACA+AGG | + | chr8.2:4823912-4823931 | MS.gene58222:intron | 25.0% |
| ! | CTCCAAAAATATATACTTAC+TGG | + | chr8.2:4824623-4824642 | MS.gene58222:intron | 25.0% |
| ! | CTTCGATTATCTATATAGTT+TGG | - | chr8.2:4823595-4823614 | None:intergenic | 25.0% |
| !! | AAGTGTTGTGTATATATTGT+AGG | + | chr8.2:4823480-4823499 | MS.gene58222:intron | 25.0% |
| !! | TATTGGAGAATGATTTTTGA+GGG | + | chr8.2:4824132-4824151 | MS.gene58222:intron | 25.0% |
| !!! | ACTTTTTCATTAAGCTTACA+GGG | + | chr8.2:4823113-4823132 | MS.gene58222:intron | 25.0% |
| !!! | TCATTTTAGTTTCCGTAAAA+TGG | - | chr8.2:4823377-4823396 | None:intergenic | 25.0% |
| !!! | TCTTGGTAATTTTCACTTTT+AGG | + | chr8.2:4824844-4824863 | MS.gene58222:intron | 25.0% |
| AAAAGTCCTTGTAAGCTTAT+AGG | - | chr8.2:4823099-4823118 | None:intergenic | 30.0% | |
| AAATCCTTTAATCAAGCCAA+AGG | - | chr8.2:4824794-4824813 | None:intergenic | 30.0% | |
| AGACTAAGTCAAAAAACCAT+TGG | - | chr8.2:4823261-4823280 | None:intergenic | 30.0% | |
| TATTACTATGAACCTTTCTG+TGG | - | chr8.2:4824870-4824889 | None:intergenic | 30.0% | |
| TGATACCAAAAGACACAATT+TGG | - | chr8.2:4823202-4823221 | None:intergenic | 30.0% | |
| TGTAAGCTTATAGGTCTAAA+GGG | - | chr8.2:4823090-4823109 | None:intergenic | 30.0% | |
| TTATAGTTTATCTGTGCCAA+TGG | + | chr8.2:4823242-4823261 | MS.gene58222:intron | 30.0% | |
| TTGTAAGCTTATAGGTCTAA+AGG | - | chr8.2:4823091-4823110 | None:intergenic | 30.0% | |
| TTTACTTATTAGTGCATGTC+TGG | + | chr8.2:4824369-4824388 | MS.gene58222:intron | 30.0% | |
| TTTAGACCTATAAGCTTACA+AGG | + | chr8.2:4823090-4823109 | MS.gene58222:intron | 30.0% | |
| TTTGTGAATAACATGGTACT+CGG | + | chr8.2:4823306-4823325 | MS.gene58222:intron | 30.0% | |
| ! | ATTAAAGGATTTTTGCCACA+AGG | + | chr8.2:4824802-4824821 | MS.gene58222:CDS | 30.0% |
| ! | CTAATCCAAATTGTGTCTTT+TGG | + | chr8.2:4823194-4823213 | MS.gene58222:intron | 30.0% |
| ! | GTATTGGAGAATGATTTTTG+AGG | + | chr8.2:4824131-4824150 | MS.gene58222:intron | 30.0% |
| ! | TCTGACTATGAACAAGTTTT+AGG | - | chr8.2:4823538-4823557 | None:intergenic | 30.0% |
| ! | TCTTAGCAAGTTGTTGATAA+GGG | - | chr8.2:4822792-4822811 | None:intergenic | 30.0% |
| ! | TGCATTTTGTGATTAGGAAT+CGG | + | chr8.2:4824904-4824923 | MS.gene58222:intron | 30.0% |
| ! | TGTGTATGCATTTTGTGATT+AGG | + | chr8.2:4824898-4824917 | MS.gene58222:intron | 30.0% |
| !! | AATGATTTTTGAGGGTTTTG+GGG | + | chr8.2:4824140-4824159 | MS.gene58222:intron | 30.0% |
| !! | AGAATGATTTTTGAGGGTTT+TGG | + | chr8.2:4824138-4824157 | MS.gene58222:intron | 30.0% |
| !! | GAATGATTTTTGAGGGTTTT+GGG | + | chr8.2:4824139-4824158 | MS.gene58222:intron | 30.0% |
| !! | GGGTATTTTTGTGAATAACA+TGG | + | chr8.2:4823299-4823318 | MS.gene58222:intron | 30.0% |
| !! | TTATCAACAACTTGCTAAGA+GGG | + | chr8.2:4822792-4822811 | MS.gene58222:intron | 30.0% |
| !!! | GACTTTTTCATTAAGCTTAC+AGG | + | chr8.2:4823112-4823131 | MS.gene58222:intron | 30.0% |
| !!! | GTGGTTTACTTTTAGAATGT+AGG | + | chr8.2:4823822-4823841 | MS.gene58222:intron | 30.0% |
| !!! | TTTTTTACTTCCCTCAAATG+AGG | - | chr8.2:4824109-4824128 | None:intergenic | 30.0% |
| AAACTTGAAGGAAAAGGGAT+TGG | + | chr8.2:4824434-4824453 | MS.gene58222:intron | 35.0% | |
| AACTTCTTACCAAGTGCTTA+CGG | - | chr8.2:4822927-4822946 | None:intergenic | 35.0% | |
| AACTTGAAGGAAAAGGGATT+GGG | + | chr8.2:4824435-4824454 | MS.gene58222:intron | 35.0% | |
| AAGAAATAGAGGACTTTGAG+AGG | + | chr8.2:4824039-4824058 | MS.gene58222:intron | 35.0% | |
| ACAAAATCCTCCTCATTTGA+GGG | + | chr8.2:4824096-4824115 | MS.gene58222:intron | 35.0% | |
| AGAGTAAGTGGAAGAAATAG+AGG | + | chr8.2:4824028-4824047 | MS.gene58222:intron | 35.0% | |
| AGCAACAAACTTGAAGGAAA+AGG | + | chr8.2:4824428-4824447 | MS.gene58222:intron | 35.0% | |
| ATCTAAAAGTTCACCGTCTT+CGG | - | chr8.2:4822833-4822852 | None:intergenic | 35.0% | |
| CCATAAAGAGGAGTTATCTA+GGG | + | chr8.2:4823989-4824008 | MS.gene58222:intron | 35.0% | |
| CTCTTAGCAAGTTGTTGATA+AGG | - | chr8.2:4822793-4822812 | None:intergenic | 35.0% | |
| CTTTAATCAAGCCAAAGGAT+TGG | - | chr8.2:4824789-4824808 | None:intergenic | 35.0% | |
| GATAATTCTTCACTTACTGC+TGG | + | chr8.2:4823654-4823673 | MS.gene58222:intron | 35.0% | |
| GCAACAAACTTGAAGGAAAA+GGG | + | chr8.2:4824429-4824448 | MS.gene58222:intron | 35.0% | |
| GGTAAAAAGGAAAGAGTAAG+TGG | + | chr8.2:4824016-4824035 | MS.gene58222:intron | 35.0% | |
| GTTCTGGTACATATATCTTG+TGG | + | chr8.2:4823753-4823772 | MS.gene58222:CDS | 35.0% | |
| TACAAAATCCTCCTCATTTG+AGG | + | chr8.2:4824095-4824114 | MS.gene58222:intron | 35.0% | |
| TCATAGTCAGATAATCCTGT+AGG | + | chr8.2:4823547-4823566 | MS.gene58222:intron | 35.0% | |
| TCTAAAGGGATGAGTTAAAC+AGG | - | chr8.2:4823076-4823095 | None:intergenic | 35.0% | |
| TTATGCTTGGCACAAAAATG+TGG | + | chr8.2:4823803-4823822 | MS.gene58222:intron | 35.0% | |
| TTTCTGCCATCATGCAAAAA+TGG | + | chr8.2:4823416-4823435 | MS.gene58222:intron | 35.0% | |
| ! | ACATTTTTGTGCCAAGCATA+AGG | - | chr8.2:4823804-4823823 | None:intergenic | 35.0% |
| ! | GAACTGTACTCTCCATTTTA+CGG | + | chr8.2:4823362-4823381 | MS.gene58222:intron | 35.0% |
| ! | GTCTTCTGTAGTTTTTCTGT+CGG | + | chr8.2:4823277-4823296 | MS.gene58222:intron | 35.0% |
| ! | TAAGACTACGTTCTTTGAAG+TGG | - | chr8.2:4823889-4823908 | None:intergenic | 35.0% |
| ! | TATCTAGGGCTTTGGTAAAA+AGG | + | chr8.2:4824003-4824022 | MS.gene58222:intron | 35.0% |
| ! | TCTTCTGTAGTTTTTCTGTC+GGG | + | chr8.2:4823278-4823297 | MS.gene58222:intron | 35.0% |
| !! | ATGAACCTTTAGGCTTTGTT+TGG | - | chr8.2:4824345-4824364 | None:intergenic | 35.0% |
| !! | ATGATTTTTGAGGGTTTTGG+GGG | + | chr8.2:4824141-4824160 | MS.gene58222:intron | 35.0% |
| !! | CAATCCTTTGGCTTGATTAA+AGG | + | chr8.2:4824787-4824806 | MS.gene58222:CDS | 35.0% |
| !! | CTTATCAACAACTTGCTAAG+AGG | + | chr8.2:4822791-4822810 | MS.gene58222:intron | 35.0% |
| !! | TGAACCTTTAGGCTTTGTTT+GGG | - | chr8.2:4824344-4824363 | None:intergenic | 35.0% |
| !! | TGGATTAGCTTCTAACTTAC+AGG | - | chr8.2:4823182-4823201 | None:intergenic | 35.0% |
| !! | TTCTTTGAAGTGGTACCAAT+TGG | - | chr8.2:4823879-4823898 | None:intergenic | 35.0% |
| AACTCCCAAACAAAGCCTAA+AGG | + | chr8.2:4824337-4824356 | MS.gene58222:intron | 40.0% | |
| AAGGTTACTTAGGAGCAGAA+TGG | - | chr8.2:4823785-4823804 | None:intergenic | 40.0% | |
| ACATGTCAGATACCAGCATT+TGG | + | chr8.2:4824757-4824776 | MS.gene58222:intron | 40.0% | |
| ATATTGTAGGCTGTAGCCTA+TGG | + | chr8.2:4823493-4823512 | MS.gene58222:intron | 40.0% | |
| CAGATAATCCTGTAGGTCTA+GGG | + | chr8.2:4823554-4823573 | MS.gene58222:intron | 40.0% | |
| CCAGAAAGCAACAAACTTGA+AGG | + | chr8.2:4824422-4824441 | MS.gene58222:intron | 40.0% | |
| CCCTAGATAACTCCTCTTTA+TGG | - | chr8.2:4823992-4824011 | None:intergenic | 40.0% | |
| CTCCTAAGTAACCTTATGCT+TGG | + | chr8.2:4823790-4823809 | MS.gene58222:intron | 40.0% | |
| CTGTACAATCAACTGTGGTT+GGG | + | chr8.2:4824566-4824585 | MS.gene58222:intron | 40.0% | |
| GATCTATCATCTACAAGGCT+TGG | + | chr8.2:4823917-4823936 | MS.gene58222:intron | 40.0% | |
| GCCATAAAGAGGAGTTATCT+AGG | + | chr8.2:4823988-4824007 | MS.gene58222:intron | 40.0% | |
| GGTATCTGACATGTCATGAA+GGG | - | chr8.2:4824751-4824770 | None:intergenic | 40.0% | |
| GTGTTCTGTACAATCAACTG+TGG | + | chr8.2:4824561-4824580 | MS.gene58222:intron | 40.0% | |
| TAAAGATCTCCGTAAGCACT+TGG | + | chr8.2:4822915-4822934 | MS.gene58222:intron | 40.0% | |
| TAGCCTATGGAATTTGGTCT+CGG | + | chr8.2:4823506-4823525 | MS.gene58222:intron | 40.0% | |
| TCAGATAATCCTGTAGGTCT+AGG | + | chr8.2:4823553-4823572 | MS.gene58222:intron | 40.0% | |
| TCTGTACAATCAACTGTGGT+TGG | + | chr8.2:4824565-4824584 | MS.gene58222:intron | 40.0% | |
| TGCCAAGCATAAGGTTACTT+AGG | - | chr8.2:4823795-4823814 | None:intergenic | 40.0% | |
| TGGTATCTGACATGTCATGA+AGG | - | chr8.2:4824752-4824771 | None:intergenic | 40.0% | |
| TTGTAGTCACACACTCCAAT+TGG | + | chr8.2:4823861-4823880 | MS.gene58222:intron | 40.0% | |
| TTTACTTCCCTCAAATGAGG+AGG | - | chr8.2:4824106-4824125 | None:intergenic | 40.0% | |
| TTTGGGGGTGGAAAATATAG+GGG | - | chr8.2:4824299-4824318 | None:intergenic | 40.0% | |
| ! | AGCTTACAGGGAGTTTTTCA+TGG | + | chr8.2:4823125-4823144 | MS.gene58222:intron | 40.0% |
| ! | ATTTTTGCCACAAGGTTCAG+AGG | + | chr8.2:4824810-4824829 | MS.gene58222:CDS | 40.0% |
| ! | CTTCTGTAGTTTTTCTGTCG+GGG | + | chr8.2:4823279-4823298 | MS.gene58222:intron | 40.0% |
| ! | CTTTGGGGGTGGAAAATATA+GGG | - | chr8.2:4824300-4824319 | None:intergenic | 40.0% |
| ! | GAAGACGGTGAACTTTTAGA+TGG | + | chr8.2:4822832-4822851 | MS.gene58222:CDS | 40.0% |
| ! | GCTTACAGGGAGTTTTTCAT+GGG | + | chr8.2:4823126-4823145 | MS.gene58222:intron | 40.0% |
| ! | TTTGGAGCATACCAATCCTT+TGG | + | chr8.2:4824775-4824794 | MS.gene58222:CDS | 40.0% |
| !! | CCTTCAAGTTTGTTGCTTTC+TGG | - | chr8.2:4824425-4824444 | None:intergenic | 40.0% |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | - | chr8.2:4824337-4824356 | None:intergenic | 40.0% |
| !! | TTCACCTGGAAGCATTGAAT+TGG | + | chr8.2:4822735-4822754 | MS.gene58222:intron | 40.0% |
| !! | TTCACTTTTAGGCCACAGAA+AGG | + | chr8.2:4824855-4824874 | MS.gene58222:intron | 40.0% |
| !!! | TGATTTTTGAGGGTTTTGGG+GGG | + | chr8.2:4824142-4824161 | MS.gene58222:intron | 40.0% |
| !!! | TGTCAGCCATTTTTGCATGA+TGG | - | chr8.2:4823425-4823444 | None:intergenic | 40.0% |
| AAGCCTAGCTATACCGAAGA+CGG | + | chr8.2:4822817-4822836 | MS.gene58222:CDS | 45.0% | |
| AGCCTATGGAATTTGGTCTC+GGG | + | chr8.2:4823507-4823526 | MS.gene58222:intron | 45.0% | |
| AGGCTGTAGCCTATGGAATT+TGG | + | chr8.2:4823500-4823519 | MS.gene58222:intron | 45.0% | |
| ATCCCGAGACCAAATTCCAT+AGG | - | chr8.2:4823512-4823531 | None:intergenic | 45.0% | |
| CAAGCCAATTCAATGCTTCC+AGG | - | chr8.2:4822742-4822761 | None:intergenic | 45.0% | |
| CCAGAACTTTCCAGAGATGA+TGG | - | chr8.2:4823740-4823759 | None:intergenic | 45.0% | |
| CCATTGTGAGAGAAGTCACT+AGG | - | chr8.2:4824512-4824531 | None:intergenic | 45.0% | |
| CCTAGTGACTTCTCTCACAA+TGG | + | chr8.2:4824509-4824528 | MS.gene58222:intron | 45.0% | |
| GAGGGAAAAGATGGAGAAGA+AGG | + | chr8.2:4824953-4824972 | MS.gene58222:CDS | 45.0% | |
| GATTGGTATGCTCCAAATGC+TGG | - | chr8.2:4824772-4824791 | None:intergenic | 45.0% | |
| GGTATGACTGTCTTGTCTTG+TGG | + | chr8.2:4822886-4822905 | MS.gene58222:intron | 45.0% | |
| TAAGAGTTCCCTAGACCTAC+AGG | - | chr8.2:4823565-4823584 | None:intergenic | 45.0% | |
| TGCAACAACCTTCACTGACA+CGG | + | chr8.2:4824720-4824739 | MS.gene58222:intron | 45.0% | |
| TTTGAGAGGAGAGAGCTTTG+GGG | + | chr8.2:4824053-4824072 | MS.gene58222:intron | 45.0% | |
| ! | ACTTTGAGAGGAGAGAGCTT+TGG | + | chr8.2:4824051-4824070 | MS.gene58222:intron | 45.0% |
| ! | AGAGGAGTTATCTAGGGCTT+TGG | + | chr8.2:4823995-4824014 | MS.gene58222:intron | 45.0% |
| ! | ATCTTTTCCCTCTTCTTGCG+GGG | - | chr8.2:4824945-4824964 | None:intergenic | 45.0% |
| ! | CATCTTTTCCCTCTTCTTGC+GGG | - | chr8.2:4824946-4824965 | None:intergenic | 45.0% |
| ! | CCATCATCTCTGGAAAGTTC+TGG | + | chr8.2:4823737-4823756 | MS.gene58222:CDS | 45.0% |
| ! | CCATCTTTTCCCTCTTCTTG+CGG | - | chr8.2:4824947-4824966 | None:intergenic | 45.0% |
| ! | CTTTGAGAGGAGAGAGCTTT+GGG | + | chr8.2:4824052-4824071 | MS.gene58222:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr8.2:4824332-4824351 | None:intergenic | 45.0% |
| ! | GACGGTGAACTTTTAGATGG+TGG | + | chr8.2:4822835-4822854 | MS.gene58222:CDS | 45.0% |
| !! | CTGGAAGCATTGAATTGGCT+TGG | + | chr8.2:4822740-4822759 | MS.gene58222:intron | 45.0% |
| !! | GCTTTGGGGGTGGAAAATAT+AGG | - | chr8.2:4824301-4824320 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr8.2:4824333-4824352 | None:intergenic | 45.0% |
| !!! | TGGTGGTTTTGATATGACCC+TGG | + | chr8.2:4822852-4822871 | MS.gene58222:CDS | 45.0% |
| !!! | TGGTTTTGATATGACCCTGG+TGG | + | chr8.2:4822855-4822874 | MS.gene58222:CDS | 45.0% |
| AAGGGATTGGGTCGCTAAAC+AGG | + | chr8.2:4824447-4824466 | MS.gene58222:intron | 50.0% | |
| CAAGTCGCTTCCATCATCTC+TGG | + | chr8.2:4823727-4823746 | MS.gene58222:CDS | 50.0% | |
| CCGCAAGAAGAGGGAAAAGA+TGG | + | chr8.2:4824944-4824963 | MS.gene58222:CDS | 50.0% | |
| GAAAAGACCCCGCAAGAAGA+GGG | + | chr8.2:4824935-4824954 | MS.gene58222:CDS | 50.0% | |
| GACCATACCTCTGAACCTTG+TGG | - | chr8.2:4824820-4824839 | None:intergenic | 50.0% | |
| TATGACCCTGGTGGAGTTTG+CGG | + | chr8.2:4822864-4822883 | MS.gene58222:CDS | 50.0% | |
| TCAATGCTTCCAGGTGAAGC+TGG | - | chr8.2:4822733-4822752 | None:intergenic | 50.0% | |
| TCACCGTCTTCGGTATAGCT+AGG | - | chr8.2:4822823-4822842 | None:intergenic | 50.0% | |
| TCTTCCATTCCAGCTTCACC+TGG | + | chr8.2:4822721-4822740 | MS.gene58222:CDS | 50.0% | |
| TGAAAAGACCCCGCAAGAAG+AGG | + | chr8.2:4824934-4824953 | MS.gene58222:CDS | 50.0% | |
| TGCCACAAGGTTCAGAGGTA+TGG | + | chr8.2:4824815-4824834 | MS.gene58222:intron | 50.0% | |
| ! | CAGAGGTATGGTCAACGTCT+TGG | + | chr8.2:4824827-4824846 | MS.gene58222:intron | 50.0% |
| ! | TTGAGAGGAGAGAGCTTTGG+GGG | + | chr8.2:4824054-4824073 | MS.gene58222:intron | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr8.2:4824334-4824353 | None:intergenic | 50.0% |
| ATGACCCTGGTGGAGTTTGC+GGG | + | chr8.2:4822865-4822884 | MS.gene58222:CDS | 55.0% | |
| CATACCCGCAAACTCCACCA+GGG | - | chr8.2:4822872-4822891 | None:intergenic | 55.0% | |
| GCTTCCAGGTGAAGCTGGAA+TGG | - | chr8.2:4822728-4822747 | None:intergenic | 55.0% | |
| GGATTGGGTCGCTAAACAGG+AGG | + | chr8.2:4824450-4824469 | MS.gene58222:intron | 55.0% | |
| TCATACCCGCAAACTCCACC+AGG | - | chr8.2:4822873-4822892 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | - | chr8.2:4824329-4824348 | None:intergenic | 55.0% | |
| TTGGGTCGCTAAACAGGAGG+AGG | + | chr8.2:4824453-4824472 | MS.gene58222:intron | 55.0% | |
| !! | TGAGAGGAGAGAGCTTTGGG+GGG | + | chr8.2:4824055-4824074 | MS.gene58222:intron | 55.0% |
| GGAGTTTGGAGGGGAGGAGA+GGG | - | chr8.2:4824323-4824342 | None:intergenic | 60.0% | |
| GGGAGCAACCGTGTCAGTGA+AGG | - | chr8.2:4824731-4824750 | None:intergenic | 60.0% | |
| GAGGGGAGGAGAGGGCTTTG+GGG | - | chr8.2:4824315-4824334 | None:intergenic | 65.0% | |
| GGAGGGGAGGAGAGGGCTTT+GGG | - | chr8.2:4824316-4824335 | None:intergenic | 65.0% | |
| GGGAGTTTGGAGGGGAGGAG+AGG | - | chr8.2:4824324-4824343 | None:intergenic | 65.0% | |
| TGGAGGGGAGGAGAGGGCTT+TGG | - | chr8.2:4824317-4824336 | None:intergenic | 65.0% | |
| ! | AGGGGAGGAGAGGGCTTTGG+GGG | - | chr8.2:4824314-4824333 | None:intergenic | 65.0% |
| !! | GGAGGAGAGGGCTTTGGGGG+TGG | - | chr8.2:4824311-4824330 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 4822693 | 4824988 | 4822693 | ID=MS.gene58222 |
| chr8.2 | mRNA | 4822693 | 4824988 | 4822693 | ID=MS.gene58222.t1;Parent=MS.gene58222 |
| chr8.2 | exon | 4822693 | 4822745 | 4822693 | ID=MS.gene58222.t1.exon1;Parent=MS.gene58222.t1 |
| chr8.2 | CDS | 4822693 | 4822745 | 4822693 | ID=cds.MS.gene58222.t1;Parent=MS.gene58222.t1 |
| chr8.2 | exon | 4822813 | 4822899 | 4822813 | ID=MS.gene58222.t1.exon2;Parent=MS.gene58222.t1 |
| chr8.2 | CDS | 4822813 | 4822899 | 4822813 | ID=cds.MS.gene58222.t1;Parent=MS.gene58222.t1 |
| chr8.2 | exon | 4823690 | 4823774 | 4823690 | ID=MS.gene58222.t1.exon3;Parent=MS.gene58222.t1 |
| chr8.2 | CDS | 4823690 | 4823774 | 4823690 | ID=cds.MS.gene58222.t1;Parent=MS.gene58222.t1 |
| chr8.2 | exon | 4824766 | 4824831 | 4824766 | ID=MS.gene58222.t1.exon4;Parent=MS.gene58222.t1 |
| chr8.2 | CDS | 4824766 | 4824831 | 4824766 | ID=cds.MS.gene58222.t1;Parent=MS.gene58222.t1 |
| chr8.2 | exon | 4824920 | 4824988 | 4824920 | ID=MS.gene58222.t1.exon5;Parent=MS.gene58222.t1 |
| chr8.2 | CDS | 4824920 | 4824988 | 4824920 | ID=cds.MS.gene58222.t1;Parent=MS.gene58222.t1 |
| Gene Sequence |
| Protein sequence |
