Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060135.t1 | PNY04437.1 | 47.1 | 573 | 258 | 10 | 46 | 587 | 23 | 581 | 1.90E-127 | 466.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060135.t1 | Q9C9C0 | 43.1 | 531 | 266 | 8 | 80 | 587 | 90 | 607 | 6.3e-108 | 392.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060135.t1 | A0A2K3NN31 | 47.1 | 573 | 258 | 10 | 46 | 587 | 23 | 581 | 1.4e-127 | 466.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene060135 | 0.818726 | 1.69E-52 | -1.69E-46 |
| MS.gene060134 | MS.gene060135 | 0.979032 | 4.36E-147 | -1.69E-46 |
| MS.gene060135 | MS.gene060332 | 0.893386 | 6.60E-75 | -1.69E-46 |
| MS.gene060135 | MS.gene060334 | 0.804406 | 2.19E-49 | -1.69E-46 |
| MS.gene060135 | MS.gene060373 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene060135 | MS.gene069743 | 0.816053 | 6.74E-52 | -1.69E-46 |
| MS.gene060135 | MS.gene24518 | 0.830798 | 2.40E-55 | -1.69E-46 |
| MS.gene060135 | MS.gene30828 | 0.809618 | 1.73E-50 | -1.69E-46 |
| MS.gene060135 | MS.gene49642 | 0.807987 | 3.86E-50 | -1.69E-46 |
| MS.gene060135 | MS.gene50865 | 0.805055 | 1.61E-49 | -1.69E-46 |
| MS.gene060135 | MS.gene54195 | 0.806563 | 7.74E-50 | -1.69E-46 |
| MS.gene060135 | MS.gene57879 | 0.995759 | 1.39E-219 | -1.69E-46 |
| MS.gene060135 | MS.gene58067 | 0.808425 | 3.12E-50 | -1.69E-46 |
| MS.gene060135 | MS.gene58069 | 0.805658 | 1.20E-49 | -1.69E-46 |
| MS.gene060135 | MS.gene58206 | 0.832796 | 7.70E-56 | -1.69E-46 |
| MS.gene060135 | MS.gene58222 | 0.80067 | 1.29E-48 | -1.69E-46 |
| MS.gene060135 | MS.gene58295 | 0.869917 | 2.16E-66 | -1.69E-46 |
| MS.gene060135 | MS.gene66405 | 0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene060135 | MS.gene66974 | 0.804352 | 2.25E-49 | -1.69E-46 |
| MS.gene060135 | MS.gene73074 | 0.812318 | 4.50E-51 | -1.69E-46 |
| MS.gene060135 | MS.gene75050 | 0.802214 | 6.24E-49 | -1.69E-46 |
| MS.gene060135 | MS.gene79865 | -0.814373 | 1.59E-51 | -1.69E-46 |
| MS.gene060135 | MS.gene83939 | 0.814478 | 1.51E-51 | -1.69E-46 |
| MS.gene060135 | MS.gene84994 | 0.82364 | 1.24E-53 | -1.69E-46 |
| MS.gene060135 | MS.gene89289 | 0.815068 | 1.12E-51 | -1.69E-46 |
| MS.gene060135 | MS.gene91008 | 0.820128 | 8.08E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060135.t1 | MTR_4g112860 | 45.392 | 586 | 271 | 11 | 36 | 587 | 19 | 589 | 1.18e-153 | 456 |
| MS.gene060135.t1 | MTR_2g058970 | 44.444 | 531 | 259 | 7 | 80 | 587 | 84 | 601 | 8.74e-146 | 436 |
| MS.gene060135.t1 | MTR_4g112860 | 42.857 | 532 | 255 | 11 | 36 | 533 | 19 | 535 | 4.22e-123 | 375 |
| MS.gene060135.t1 | MTR_4g112820 | 38.241 | 557 | 231 | 12 | 56 | 586 | 16 | 485 | 5.56e-104 | 323 |
| MS.gene060135.t1 | MTR_4g112860 | 41.365 | 498 | 237 | 12 | 36 | 499 | 19 | 495 | 1.02e-101 | 317 |
| MS.gene060135.t1 | MTR_4g123500 | 41.379 | 464 | 237 | 8 | 131 | 587 | 5 | 440 | 7.49e-98 | 306 |
| MS.gene060135.t1 | MTR_4g112860 | 38.987 | 395 | 192 | 11 | 36 | 396 | 19 | 398 | 3.28e-68 | 226 |
| MS.gene060135.t1 | MTR_5g025810 | 32.781 | 543 | 206 | 15 | 56 | 587 | 11 | 405 | 4.23e-67 | 228 |
| MS.gene060135.t1 | MTR_4g130360 | 35.054 | 465 | 203 | 15 | 4 | 451 | 6 | 388 | 3.39e-65 | 221 |
| MS.gene060135.t1 | MTR_4g130360 | 62.712 | 59 | 20 | 1 | 532 | 588 | 388 | 446 | 5.50e-14 | 75.1 |
| MS.gene060135.t1 | MTR_4g130550 | 63.889 | 180 | 53 | 2 | 381 | 558 | 64 | 233 | 2.95e-61 | 203 |
| MS.gene060135.t1 | MTR_4g130550 | 82.051 | 39 | 7 | 0 | 245 | 283 | 32 | 70 | 8.24e-15 | 74.7 |
| MS.gene060135.t1 | MTR_4g114810 | 32.544 | 507 | 192 | 14 | 86 | 588 | 55 | 415 | 4.01e-61 | 210 |
| MS.gene060135.t1 | MTR_8g022470 | 38.012 | 342 | 169 | 9 | 253 | 587 | 8 | 313 | 5.83e-54 | 186 |
| MS.gene060135.t1 | MTR_8g022500 | 31.456 | 515 | 197 | 15 | 80 | 587 | 60 | 425 | 2.41e-51 | 184 |
| MS.gene060135.t1 | MTR_4g134260 | 41.935 | 248 | 122 | 3 | 300 | 543 | 125 | 354 | 2.78e-49 | 177 |
| MS.gene060135.t1 | MTR_5g082990 | 31.768 | 362 | 183 | 10 | 204 | 558 | 5 | 309 | 3.25e-41 | 153 |
| MS.gene060135.t1 | MTR_4g133130 | 37.555 | 229 | 90 | 6 | 360 | 587 | 49 | 225 | 2.34e-30 | 125 |
| MS.gene060135.t1 | MTR_5g083090 | 43.220 | 118 | 49 | 5 | 105 | 219 | 4 | 106 | 4.11e-20 | 87.8 |
| MS.gene060135.t1 | MTR_5g083100 | 53.846 | 65 | 27 | 1 | 522 | 583 | 176 | 240 | 5.14e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060135.t1 | AT1G73990 | 43.126 | 531 | 266 | 8 | 80 | 587 | 90 | 607 | 5.92e-133 | 404 |
| MS.gene060135.t1 | AT1G73990 | 40.461 | 477 | 248 | 8 | 80 | 533 | 90 | 553 | 2.30e-105 | 330 |
Find 118 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAATATATGAATATTT+TGG | 0.176804 | 8.4:+4084213 | MS.gene060135:CDS |
| GCTGAGAAACTTACTATTAT+AGG | 0.182398 | 8.4:+4084156 | MS.gene060135:CDS |
| GTTTGTGGAGCCATCGATTA+TGG | 0.236591 | 8.4:+4083901 | MS.gene060135:CDS |
| GGATGGTGACAAGATTATTA+TGG | 0.245096 | 8.4:+4083771 | MS.gene060135:CDS |
| TGGATTAGCTTCAGGGTTAA+TGG | 0.250434 | 8.4:+4083750 | MS.gene060135:CDS |
| AAGATCTAATTGGCTTGATA+TGG | 0.258838 | 8.4:+4083639 | MS.gene060135:CDS |
| TACTAAGAGATCTTTGAAAA+AGG | 0.265162 | 8.4:+4083507 | MS.gene060135:CDS |
| TATTGTTGGCTGATCAATTA+TGG | 0.276033 | 8.4:+4084028 | MS.gene060135:CDS |
| ATTGTTCATTGCTGCCTTAC+CGG | 0.295628 | 8.4:-4084433 | None:intergenic |
| GAGAGTTCAACCAGATTAAT+AGG | 0.301916 | 8.4:-4084534 | None:intergenic |
| TTCGATTTCGTTCCGCTCTC+TGG | 0.315989 | 8.4:+4083052 | MS.gene060135:CDS |
| CTTACTATTATAGGTTCAAT+TGG | 0.329531 | 8.4:+4084165 | MS.gene060135:CDS |
| AGGCTAATATACCTCAAAAT+AGG | 0.333847 | 8.4:+4084511 | MS.gene060135:CDS |
| AGGTATATTAGCCTTCAATT+TGG | 0.345021 | 8.4:-4084502 | None:intergenic |
| ATAGATTGTGGATTAGCTTC+AGG | 0.355026 | 8.4:+4083742 | MS.gene060135:CDS |
| ATCGGTATTATTAGAGTTTG+TGG | 0.362941 | 8.4:+4083886 | MS.gene060135:CDS |
| ATGGGTCTCAGTAAGAGATT+TGG | 0.365012 | 8.4:+4083790 | MS.gene060135:CDS |
| TCAAAATAGGCCTATTAATC+TGG | 0.371007 | 8.4:+4084524 | MS.gene060135:CDS |
| TTCTCATCCTCTTCATCTTA+CGG | 0.376793 | 8.4:+4082868 | MS.gene060135:CDS |
| ATATTCAATTTCAAGAAATC+TGG | 0.381689 | 8.4:+4083328 | MS.gene060135:CDS |
| AGATTGCCCAAGGGCGACTT+TGG | 0.388070 | 8.4:+4084409 | MS.gene060135:CDS |
| AAGAAAGAGGTTCTTTCTAA+AGG | 0.390182 | 8.4:+4084240 | MS.gene060135:CDS |
| TTGATATGGTTTCTTGTTCA+AGG | 0.394731 | 8.4:+4083653 | MS.gene060135:CDS |
| AGGATGATATAAGATCTAAT+TGG | 0.395182 | 8.4:+4083629 | MS.gene060135:CDS |
| CGATTATGGAGGTGATATAA+TGG | 0.397941 | 8.4:+4083915 | MS.gene060135:CDS |
| CTGTTGGTATATCAAATAGT+AGG | 0.400153 | 8.4:+4083857 | MS.gene060135:CDS |
| TACCGGTCCAAAGTCGCCCT+TGG | 0.405887 | 8.4:-4084416 | None:intergenic |
| GTGGGCAAATATAAAATTGC+AGG | 0.407744 | 8.4:+4083565 | MS.gene060135:CDS |
| TTGAGGGGTTTGTGAATTTG+AGG | 0.427452 | 8.4:-4082896 | None:intergenic |
| GATGGTGACAAGATTATTAT+GGG | 0.430367 | 8.4:+4083772 | MS.gene060135:CDS |
| ATGTTCCCATTCGATAAGAT+TGG | 0.439661 | 8.4:-4083536 | None:intergenic |
| ACCTGAGAGTCGGTGCCAAC+TGG | 0.441099 | 8.4:-4083178 | None:intergenic |
| GGTGCATATTTGATTGCAAC+TGG | 0.441687 | 8.4:+4084117 | MS.gene060135:CDS |
| CTCATCTACACTTAATGATC+TGG | 0.441800 | 8.4:-4084379 | None:intergenic |
| TAGATTGTGGATTAGCTTCA+GGG | 0.444789 | 8.4:+4083743 | MS.gene060135:CDS |
| TATTTGATTGCAACTGGAGC+AGG | 0.455192 | 8.4:+4084123 | MS.gene060135:CDS |
| GTAAGGCAGCAATGAACAAT+AGG | 0.470115 | 8.4:+4084436 | MS.gene060135:CDS |
| ACCGGTCCAAAGTCGCCCTT+GGG | 0.473423 | 8.4:-4084415 | None:intergenic |
| ACCAGTTGGCACCGACTCTC+AGG | 0.474513 | 8.4:+4083177 | MS.gene060135:CDS |
| TGAGGGGTTTGTGAATTTGA+GGG | 0.479572 | 8.4:-4082895 | None:intergenic |
| TATCTGTCTTCTAATTTCAT+CGG | 0.482157 | 8.4:-4083308 | None:intergenic |
| AACAGTGTTGATTATTCGAC+CGG | 0.483950 | 8.4:+4083025 | MS.gene060135:CDS |
| GATGAGAAATAAAGTGTGAA+TGG | 0.486767 | 8.4:-4082853 | None:intergenic |
| TCCAGGAGGGAATGTATTGT+TGG | 0.487832 | 8.4:+4084014 | MS.gene060135:CDS |
| GCAGGCTTAAATTCAGATGA+AGG | 0.489639 | 8.4:+4083583 | MS.gene060135:CDS |
| TCAAATAGTAGGGAAAATAT+CGG | 0.490155 | 8.4:+4083868 | MS.gene060135:CDS |
| ATTGAGAATATCCGTAGGGT+TGG | 0.499628 | 8.4:+4083949 | MS.gene060135:CDS |
| ACTGGCTGCCTCATCTGATA+AGG | 0.501161 | 8.4:-4084094 | None:intergenic |
| TTGAGAATATCCGTAGGGTT+GGG | 0.501994 | 8.4:+4083950 | MS.gene060135:CDS |
| GAGGGGTTTGTGAATTTGAG+GGG | 0.502643 | 8.4:-4082894 | None:intergenic |
| GTGTGAATGGTTTGCGATGG+AGG | 0.503001 | 8.4:-4082840 | None:intergenic |
| GCCTCGGAGCGTGTCGAACA+TGG | 0.517250 | 8.4:+4083112 | MS.gene060135:CDS |
| GCCCAAGGGCGACTTTGGAC+CGG | 0.519709 | 8.4:+4084414 | MS.gene060135:CDS |
| GAATGTGAATGGTCTGTGAA+TGG | 0.524062 | 8.4:-4082969 | None:intergenic |
| CTGCACACCATCTTCGATTG+TGG | 0.524754 | 8.4:+4082925 | MS.gene060135:CDS |
| TCAACACTGTTACCTTTACC+TGG | 0.525067 | 8.4:-4083013 | None:intergenic |
| AACCTCTACGATCTCTTCTC+CGG | 0.527699 | 8.4:+4083462 | MS.gene060135:CDS |
| CATTCTTGCATCTAAGATAC+CGG | 0.530035 | 8.4:+4084062 | MS.gene060135:CDS |
| TGCAATCAAATATGCACCAC+TGG | 0.530834 | 8.4:-4084112 | None:intergenic |
| TGTTGCTATAGCCAAATTGA+AGG | 0.532127 | 8.4:+4084491 | MS.gene060135:CDS |
| CTTAAATTCAGATGAAGGAT+GGG | 0.532180 | 8.4:+4083588 | MS.gene060135:CDS |
| ATTACACCAATCTTATCGAA+TGG | 0.535345 | 8.4:+4083530 | MS.gene060135:CDS |
| GGAAATGATGAAGGCAATTG+AGG | 0.537388 | 8.4:+4083609 | MS.gene060135:CDS |
| TGGGTCGAAAAGATTTAAAA+CGG | 0.537784 | 8.4:-4082949 | None:intergenic |
| TTACACCAATCTTATCGAAT+GGG | 0.537864 | 8.4:+4083531 | MS.gene060135:CDS |
| ACCTTTACCTGGAGTAGAAG+TGG | 0.539130 | 8.4:-4083002 | None:intergenic |
| AGGGCGACTTTGGACCGGTA+AGG | 0.542327 | 8.4:+4084419 | MS.gene060135:CDS |
| GCTTAAATTCAGATGAAGGA+TGG | 0.545084 | 8.4:+4083587 | MS.gene060135:CDS |
| ATGGTGTGCAGTGGAATTTG+AGG | 0.545985 | 8.4:-4082913 | None:intergenic |
| TTAGTAAGAGTAGTTGTCTC+CGG | 0.546132 | 8.4:-4083481 | None:intergenic |
| GAAGAGATCGTAGAGGTTGG+AGG | 0.546294 | 8.4:-4083457 | None:intergenic |
| GCCAACAATACATTCCCTCC+TGG | 0.546346 | 8.4:-4084015 | None:intergenic |
| TTGATGCGCTCTTCTTCATG+TGG | 0.546362 | 8.4:-4084306 | None:intergenic |
| TGGTGTGCAGTGGAATTTGA+GGG | 0.550066 | 8.4:-4082912 | None:intergenic |
| GGAGAAGAGATCGTAGAGGT+TGG | 0.556545 | 8.4:-4083460 | None:intergenic |
| TCCACTTCTACTCCAGGTAA+AGG | 0.557566 | 8.4:+4083001 | MS.gene060135:CDS |
| AAACGGTCCACAATCGAAGA+TGG | 0.562971 | 8.4:-4082932 | None:intergenic |
| GATGAAAAGTAGAATGTGAA+TGG | 0.566518 | 8.4:-4082980 | None:intergenic |
| GTTTGAAGGCTATAATCCTA+CGG | 0.566827 | 8.4:+4083983 | MS.gene060135:CDS |
| TGTTGGTATATCAAATAGTA+GGG | 0.568964 | 8.4:+4083858 | MS.gene060135:CDS |
| TGAAGGATGGGAAATGATGA+AGG | 0.569473 | 8.4:+4083600 | MS.gene060135:CDS |
| GGCAGCAATGAACAATAGGT+TGG | 0.572321 | 8.4:+4084440 | MS.gene060135:CDS |
| CTCTCAAAACCCCAAAATGT+AGG | 0.578078 | 8.4:-4083373 | None:intergenic |
| AATGTGAATGGTCTGTGAAT+GGG | 0.582701 | 8.4:-4082968 | None:intergenic |
| CGGAACGAAATCGAAATCTC+CGG | 0.584439 | 8.4:-4083044 | None:intergenic |
| AATAGGTTGGTTGATGCGCT+AGG | 0.587278 | 8.4:+4084453 | MS.gene060135:CDS |
| TCTGATAAGGAAGAAATGAC+CGG | 0.587654 | 8.4:-4084081 | None:intergenic |
| CAGATCATTAAGTGTAGATG+AGG | 0.588798 | 8.4:+4084380 | MS.gene060135:CDS |
| GGGGTTTCCGTAAGATGAAG+AGG | 0.593634 | 8.4:-4082875 | None:intergenic |
| CATTTCTTCCTTATCAGATG+AGG | 0.593943 | 8.4:+4084086 | MS.gene060135:CDS |
| GATCAAGACTCTGTTAGCCT+CGG | 0.596334 | 8.4:+4083096 | MS.gene060135:CDS |
| CAATCGAAGATGGTGTGCAG+TGG | 0.598273 | 8.4:-4082922 | None:intergenic |
| TTAGCTTCAGGGTTAATGGA+TGG | 0.600853 | 8.4:+4083754 | MS.gene060135:CDS |
| ATCCTACGGATTGACAGTCC+AGG | 0.601328 | 8.4:+4083997 | MS.gene060135:CDS |
| TTTGATTGAGAATATCCGTA+GGG | 0.609950 | 8.4:+4083945 | MS.gene060135:CDS |
| TATATCACCTCCATAATCGA+TGG | 0.612527 | 8.4:-4083911 | None:intergenic |
| GAGGTTGAAGAGATTGCCCA+AGG | 0.622061 | 8.4:+4084399 | MS.gene060135:CDS |
| CTCCTGGACTGTCAATCCGT+AGG | 0.622715 | 8.4:-4083999 | None:intergenic |
| CTTTGTAGACAAGGTAGCGA+TGG | 0.623654 | 8.4:+4084356 | MS.gene060135:CDS |
| AACTATTTGAGAATGATCAT+CGG | 0.625097 | 8.4:+4084274 | MS.gene060135:CDS |
| GAATGGGAACATAAGACAGT+GGG | 0.628199 | 8.4:+4083547 | MS.gene060135:CDS |
| ATTTGATTGAGAATATCCGT+AGG | 0.630652 | 8.4:+4083944 | MS.gene060135:CDS |
| TTACAAACACTTTGTAGACA+AGG | 0.630675 | 8.4:+4084347 | MS.gene060135:CDS |
| AAAGTGTGAATGGTTTGCGA+TGG | 0.637871 | 8.4:-4082843 | None:intergenic |
| GGTGTGCAGTGGAATTTGAG+GGG | 0.647885 | 8.4:-4082911 | None:intergenic |
| AGGTTGGTTGATGCGCTAGG+TGG | 0.658606 | 8.4:+4084456 | MS.gene060135:CDS |
| TGTGGAGCCATCGATTATGG+AGG | 0.660667 | 8.4:+4083904 | MS.gene060135:CDS |
| TACGGATTGACAGTCCAGGA+GGG | 0.661634 | 8.4:+4084001 | MS.gene060135:CDS |
| TTATCAGATGAGGCAGCCAG+TGG | 0.663360 | 8.4:+4084096 | MS.gene060135:CDS |
| TAAAGACAATACCTGAGAGT+CGG | 0.663419 | 8.4:-4083188 | None:intergenic |
| CTACGGATTGACAGTCCAGG+AGG | 0.672726 | 8.4:+4084000 | MS.gene060135:CDS |
| AGGTTGAAGAGATTGCCCAA+GGG | 0.677412 | 8.4:+4084400 | MS.gene060135:CDS |
| CGAATGGGAACATAAGACAG+TGG | 0.682407 | 8.4:+4083546 | MS.gene060135:CDS |
| ACCATGTTCGACACGCTCCG+AGG | 0.691925 | 8.4:-4083113 | None:intergenic |
| ACAAATAGAGCAGACACGCG+AGG | 0.694628 | 8.4:-4083250 | None:intergenic |
| TATTTCTTAAAACCAGAGAG+CGG | 0.701941 | 8.4:-4083064 | None:intergenic |
| CTCCGGAGAAGAGATCGTAG+AGG | 0.751065 | 8.4:-4083464 | None:intergenic |
| AGACACGCGAGGATCATATG+CGG | 0.776119 | 8.4:-4083239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAATATATGAATATTT+TGG | + | chr8.4:4084213-4084232 | MS.gene060135:CDS | 10.0% |
| !!! | ATTTTCATGAAACAAAAAAT+TGG | + | chr8.4:4083719-4083738 | MS.gene060135:CDS | 15.0% |
| !! | ATATTCAATTTCAAGAAATC+TGG | + | chr8.4:4083328-4083347 | MS.gene060135:CDS | 20.0% |
| !! | TTCAAGGAAAATATCAAAAA+AGG | + | chr8.4:4083669-4083688 | MS.gene060135:CDS | 20.0% |
| !!! | ATATTTTGGTTTTAAGAAAG+AGG | + | chr8.4:4084227-4084246 | MS.gene060135:CDS | 20.0% |
| !!! | ATATTTTTCTGTACATGTTA+CGG | - | chr8.4:4082811-4082830 | None:intergenic | 20.0% |
| ! | AACTATTTGAGAATGATCAT+CGG | + | chr8.4:4084274-4084293 | MS.gene060135:CDS | 25.0% |
| ! | ACAAAAAATTGGATAGATTG+TGG | + | chr8.4:4083730-4083749 | MS.gene060135:CDS | 25.0% |
| ! | AGGATGATATAAGATCTAAT+TGG | + | chr8.4:4083629-4083648 | MS.gene060135:CDS | 25.0% |
| ! | CTTACTATTATAGGTTCAAT+TGG | + | chr8.4:4084165-4084184 | MS.gene060135:CDS | 25.0% |
| ! | TATCTGTCTTCTAATTTCAT+CGG | - | chr8.4:4083311-4083330 | None:intergenic | 25.0% |
| ! | TCAAATAGTAGGGAAAATAT+CGG | + | chr8.4:4083868-4083887 | MS.gene060135:CDS | 25.0% |
| ! | TGTTGGTATATCAAATAGTA+GGG | + | chr8.4:4083858-4083877 | MS.gene060135:CDS | 25.0% |
| !! | TACTAAGAGATCTTTGAAAA+AGG | + | chr8.4:4083507-4083526 | MS.gene060135:CDS | 25.0% |
| !!! | CTCTGGTTTTAAGAAATATA+TGG | + | chr8.4:4083069-4083088 | MS.gene060135:CDS | 25.0% |
| !!! | TAGTGTTTTGAGAATCAATT+TGG | + | chr8.4:4083135-4083154 | MS.gene060135:CDS | 25.0% |
| !!! | TATATAGATGCTTTTGATTG+TGG | + | chr8.4:4083274-4083293 | MS.gene060135:CDS | 25.0% |
| AAGAAAGAGGTTCTTTCTAA+AGG | + | chr8.4:4084240-4084259 | MS.gene060135:CDS | 30.0% | |
| AGGCTAATATACCTCAAAAT+AGG | + | chr8.4:4084511-4084530 | MS.gene060135:CDS | 30.0% | |
| ATCGGTATTATTAGAGTTTG+TGG | + | chr8.4:4083886-4083905 | MS.gene060135:CDS | 30.0% | |
| ATTACACCAATCTTATCGAA+TGG | + | chr8.4:4083530-4083549 | MS.gene060135:CDS | 30.0% | |
| ATTTGATTGAGAATATCCGT+AGG | + | chr8.4:4083944-4083963 | MS.gene060135:CDS | 30.0% | |
| CTGTTGGTATATCAAATAGT+AGG | + | chr8.4:4083857-4083876 | MS.gene060135:CDS | 30.0% | |
| CTTAAATTCAGATGAAGGAT+GGG | + | chr8.4:4083588-4083607 | MS.gene060135:CDS | 30.0% | |
| GATGAAAAGTAGAATGTGAA+TGG | - | chr8.4:4082983-4083002 | None:intergenic | 30.0% | |
| GATGAGAAATAAAGTGTGAA+TGG | - | chr8.4:4082856-4082875 | None:intergenic | 30.0% | |
| GATGGTGACAAGATTATTAT+GGG | + | chr8.4:4083772-4083791 | MS.gene060135:CDS | 30.0% | |
| GCTGAGAAACTTACTATTAT+AGG | + | chr8.4:4084156-4084175 | MS.gene060135:CDS | 30.0% | |
| TATTTCTTAAAACCAGAGAG+CGG | - | chr8.4:4083067-4083086 | None:intergenic | 30.0% | |
| TCAAAATAGGCCTATTAATC+TGG | + | chr8.4:4084524-4084543 | MS.gene060135:CDS | 30.0% | |
| TGGGTCGAAAAGATTTAAAA+CGG | - | chr8.4:4082952-4082971 | None:intergenic | 30.0% | |
| TTACAAACACTTTGTAGACA+AGG | + | chr8.4:4084347-4084366 | MS.gene060135:CDS | 30.0% | |
| TTACACCAATCTTATCGAAT+GGG | + | chr8.4:4083531-4083550 | MS.gene060135:CDS | 30.0% | |
| TTGATATGGTTTCTTGTTCA+AGG | + | chr8.4:4083653-4083672 | MS.gene060135:CDS | 30.0% | |
| TTTGATTGAGAATATCCGTA+GGG | + | chr8.4:4083945-4083964 | MS.gene060135:CDS | 30.0% | |
| ! | AGATTAATAGGCCTATTTTG+AGG | - | chr8.4:4084525-4084544 | None:intergenic | 30.0% |
| ! | ATAAGATTTTCGCTTAGTTG+AGG | - | chr8.4:4083214-4083233 | None:intergenic | 30.0% |
| ! | TATTGTTGGCTGATCAATTA+TGG | + | chr8.4:4084028-4084047 | MS.gene060135:CDS | 30.0% |
| ! | TGCTTTTATGCCTACATTTT+GGG | + | chr8.4:4083363-4083382 | MS.gene060135:CDS | 30.0% |
| !! | AAGATCTAATTGGCTTGATA+TGG | + | chr8.4:4083639-4083658 | MS.gene060135:CDS | 30.0% |
| !! | AGGTATATTAGCCTTCAATT+TGG | - | chr8.4:4084505-4084524 | None:intergenic | 30.0% |
| !! | TTGCTTTTATGCCTACATTT+TGG | + | chr8.4:4083362-4083381 | MS.gene060135:CDS | 30.0% |
| !!! | AAGGACCTTCTAACTTTTTT+CGG | + | chr8.4:4083688-4083707 | MS.gene060135:CDS | 30.0% |
| !!! | GAATATATTTTGAAGTCGAG+CGG | - | chr8.4:4083820-4083839 | None:intergenic | 30.0% |
| !!! | GTTTTGAGAATCAATTTGGA+AGG | + | chr8.4:4083139-4083158 | MS.gene060135:CDS | 30.0% |
| AATGTGAATGGTCTGTGAAT+GGG | - | chr8.4:4082971-4082990 | None:intergenic | 35.0% | |
| ATGTTCCCATTCGATAAGAT+TGG | - | chr8.4:4083539-4083558 | None:intergenic | 35.0% | |
| CACTACCGAAAAAAGTTAGA+AGG | - | chr8.4:4083696-4083715 | None:intergenic | 35.0% | |
| CAGATCATTAAGTGTAGATG+AGG | + | chr8.4:4084380-4084399 | MS.gene060135:CDS | 35.0% | |
| CATTTCTTCCTTATCAGATG+AGG | + | chr8.4:4084086-4084105 | MS.gene060135:CDS | 35.0% | |
| CGATTATGGAGGTGATATAA+TGG | + | chr8.4:4083915-4083934 | MS.gene060135:CDS | 35.0% | |
| CTCATCTACACTTAATGATC+TGG | - | chr8.4:4084382-4084401 | None:intergenic | 35.0% | |
| GAGAGTTCAACCAGATTAAT+AGG | - | chr8.4:4084537-4084556 | None:intergenic | 35.0% | |
| GCTTAAATTCAGATGAAGGA+TGG | + | chr8.4:4083587-4083606 | MS.gene060135:CDS | 35.0% | |
| GGATGGTGACAAGATTATTA+TGG | + | chr8.4:4083771-4083790 | MS.gene060135:CDS | 35.0% | |
| GTGGGCAAATATAAAATTGC+AGG | + | chr8.4:4083565-4083584 | MS.gene060135:CDS | 35.0% | |
| GTTTGAAGGCTATAATCCTA+CGG | + | chr8.4:4083983-4084002 | MS.gene060135:CDS | 35.0% | |
| TAAAGACAATACCTGAGAGT+CGG | - | chr8.4:4083191-4083210 | None:intergenic | 35.0% | |
| TATATCACCTCCATAATCGA+TGG | - | chr8.4:4083914-4083933 | None:intergenic | 35.0% | |
| TCTGATAAGGAAGAAATGAC+CGG | - | chr8.4:4084084-4084103 | None:intergenic | 35.0% | |
| TGGGTCATCAAAAAGTTTGA+AGG | + | chr8.4:4083969-4083988 | MS.gene060135:CDS | 35.0% | |
| TGTTGCTATAGCCAAATTGA+AGG | + | chr8.4:4084491-4084510 | MS.gene060135:CDS | 35.0% | |
| TTAGTAAGAGTAGTTGTCTC+CGG | - | chr8.4:4083484-4083503 | None:intergenic | 35.0% | |
| TTCTCATCCTCTTCATCTTA+CGG | + | chr8.4:4082868-4082887 | MS.gene060135:CDS | 35.0% | |
| ! | CAAGTTAAAAAGTGCACTGT+TGG | + | chr8.4:4083841-4083860 | MS.gene060135:CDS | 35.0% |
| ! | CATTCTTGCATCTAAGATAC+CGG | + | chr8.4:4084062-4084081 | MS.gene060135:CDS | 35.0% |
| ! | GCTTTTATGCCTACATTTTG+GGG | + | chr8.4:4083364-4083383 | MS.gene060135:CDS | 35.0% |
| ! | TTGGAAGGAAAGTTTTCAGA+TGG | + | chr8.4:4083154-4083173 | MS.gene060135:CDS | 35.0% |
| ! | TTTTTCTGTACATGTTACGG+AGG | - | chr8.4:4082808-4082827 | None:intergenic | 35.0% |
| !! | AACAGTGTTGATTATTCGAC+CGG | + | chr8.4:4083025-4083044 | MS.gene060135:CDS | 35.0% |
| !! | AGATGCTTTTGATTGTGGTT+GGG | + | chr8.4:4083279-4083298 | MS.gene060135:CDS | 35.0% |
| !! | ATAGATTGTGGATTAGCTTC+AGG | + | chr8.4:4083742-4083761 | MS.gene060135:CDS | 35.0% |
| !! | TAGATGCTTTTGATTGTGGT+TGG | + | chr8.4:4083278-4083297 | MS.gene060135:CDS | 35.0% |
| !! | TAGATTGTGGATTAGCTTCA+GGG | + | chr8.4:4083743-4083762 | MS.gene060135:CDS | 35.0% |
| !!! | TCTAACTTTTTTCGGTAGTG+AGG | + | chr8.4:4083696-4083715 | MS.gene060135:CDS | 35.0% |
| ATGGGTCTCAGTAAGAGATT+TGG | + | chr8.4:4083790-4083809 | MS.gene060135:CDS | 40.0% | |
| ATTGAGAATATCCGTAGGGT+TGG | + | chr8.4:4083949-4083968 | MS.gene060135:CDS | 40.0% | |
| ATTGTTCATTGCTGCCTTAC+CGG | - | chr8.4:4084436-4084455 | None:intergenic | 40.0% | |
| CTCTCAAAACCCCAAAATGT+AGG | - | chr8.4:4083376-4083395 | None:intergenic | 40.0% | |
| GAATGGGAACATAAGACAGT+GGG | + | chr8.4:4083547-4083566 | MS.gene060135:CDS | 40.0% | |
| GAATGTGAATGGTCTGTGAA+TGG | - | chr8.4:4082972-4082991 | None:intergenic | 40.0% | |
| GCAGGCTTAAATTCAGATGA+AGG | + | chr8.4:4083583-4083602 | MS.gene060135:CDS | 40.0% | |
| GGAAATGATGAAGGCAATTG+AGG | + | chr8.4:4083609-4083628 | MS.gene060135:CDS | 40.0% | |
| GGTGCATATTTGATTGCAAC+TGG | + | chr8.4:4084117-4084136 | MS.gene060135:CDS | 40.0% | |
| GTAAGGCAGCAATGAACAAT+AGG | + | chr8.4:4084436-4084455 | MS.gene060135:CDS | 40.0% | |
| TATTTGATTGCAACTGGAGC+AGG | + | chr8.4:4084123-4084142 | MS.gene060135:CDS | 40.0% | |
| TCAACACTGTTACCTTTACC+TGG | - | chr8.4:4083016-4083035 | None:intergenic | 40.0% | |
| TGAAGGATGGGAAATGATGA+AGG | + | chr8.4:4083600-4083619 | MS.gene060135:CDS | 40.0% | |
| TGAGGGGTTTGTGAATTTGA+GGG | - | chr8.4:4082898-4082917 | None:intergenic | 40.0% | |
| TGCAATCAAATATGCACCAC+TGG | - | chr8.4:4084115-4084134 | None:intergenic | 40.0% | |
| TTAGCTTCAGGGTTAATGGA+TGG | + | chr8.4:4083754-4083773 | MS.gene060135:CDS | 40.0% | |
| TTGAGAATATCCGTAGGGTT+GGG | + | chr8.4:4083950-4083969 | MS.gene060135:CDS | 40.0% | |
| TTGAGGGGTTTGTGAATTTG+AGG | - | chr8.4:4082899-4082918 | None:intergenic | 40.0% | |
| ! | AAAGTGTGAATGGTTTGCGA+TGG | - | chr8.4:4082846-4082865 | None:intergenic | 40.0% |
| ! | AAGTTTTCAGATGGACCAGT+TGG | + | chr8.4:4083163-4083182 | MS.gene060135:CDS | 40.0% |
| ! | TTTTCATCCACTTCTACTCC+AGG | + | chr8.4:4082995-4083014 | MS.gene060135:CDS | 40.0% |
| !! | GATGCTTTTGATTGTGGTTG+GGG | + | chr8.4:4083280-4083299 | MS.gene060135:CDS | 40.0% |
| !! | TGGATTAGCTTCAGGGTTAA+TGG | + | chr8.4:4083750-4083769 | MS.gene060135:CDS | 40.0% |
| !! | TTTTTGATGACCCAACCCTA+CGG | - | chr8.4:4083963-4083982 | None:intergenic | 40.0% |
| !!! | ACATTTTGGGGTTTTGAGAG+TGG | + | chr8.4:4083376-4083395 | MS.gene060135:CDS | 40.0% |
| !!! | TATATTTTGAAGTCGAGCGG+TGG | - | chr8.4:4083817-4083836 | None:intergenic | 40.0% |
| AAACGGTCCACAATCGAAGA+TGG | - | chr8.4:4082935-4082954 | None:intergenic | 45.0% | |
| AACCTCTACGATCTCTTCTC+CGG | + | chr8.4:4083462-4083481 | MS.gene060135:CDS | 45.0% | |
| ACCTTTACCTGGAGTAGAAG+TGG | - | chr8.4:4083005-4083024 | None:intergenic | 45.0% | |
| AGGTTGAAGAGATTGCCCAA+GGG | + | chr8.4:4084400-4084419 | MS.gene060135:CDS | 45.0% | |
| ATGGTGTGCAGTGGAATTTG+AGG | - | chr8.4:4082916-4082935 | None:intergenic | 45.0% | |
| CGAATGGGAACATAAGACAG+TGG | + | chr8.4:4083546-4083565 | MS.gene060135:CDS | 45.0% | |
| CGGAACGAAATCGAAATCTC+CGG | - | chr8.4:4083047-4083066 | None:intergenic | 45.0% | |
| CTTTGTAGACAAGGTAGCGA+TGG | + | chr8.4:4084356-4084375 | MS.gene060135:CDS | 45.0% | |
| GAGGGGTTTGTGAATTTGAG+GGG | - | chr8.4:4082897-4082916 | None:intergenic | 45.0% | |
| GGCAGCAATGAACAATAGGT+TGG | + | chr8.4:4084440-4084459 | MS.gene060135:CDS | 45.0% | |
| TCCACTTCTACTCCAGGTAA+AGG | + | chr8.4:4083001-4083020 | MS.gene060135:CDS | 45.0% | |
| TCCAGGAGGGAATGTATTGT+TGG | + | chr8.4:4084014-4084033 | MS.gene060135:CDS | 45.0% | |
| TGGTGTGCAGTGGAATTTGA+GGG | - | chr8.4:4082915-4082934 | None:intergenic | 45.0% | |
| TTGATGCGCTCTTCTTCATG+TGG | - | chr8.4:4084309-4084328 | None:intergenic | 45.0% | |
| ! | GATCAAGACTCTGTTAGCCT+CGG | + | chr8.4:4083096-4083115 | MS.gene060135:CDS | 45.0% |
| ! | GTTTGTGGAGCCATCGATTA+TGG | + | chr8.4:4083901-4083920 | MS.gene060135:CDS | 45.0% |
| !! | AATAGGTTGGTTGATGCGCT+AGG | + | chr8.4:4084453-4084472 | MS.gene060135:CDS | 45.0% |
| ACAAATAGAGCAGACACGCG+AGG | - | chr8.4:4083253-4083272 | None:intergenic | 50.0% | |
| ACTGGCTGCCTCATCTGATA+AGG | - | chr8.4:4084097-4084116 | None:intergenic | 50.0% | |
| AGACACGCGAGGATCATATG+CGG | - | chr8.4:4083242-4083261 | None:intergenic | 50.0% | |
| CAATCGAAGATGGTGTGCAG+TGG | - | chr8.4:4082925-4082944 | None:intergenic | 50.0% | |
| CTGCACACCATCTTCGATTG+TGG | + | chr8.4:4082925-4082944 | MS.gene060135:CDS | 50.0% | |
| GAAGAGATCGTAGAGGTTGG+AGG | - | chr8.4:4083460-4083479 | None:intergenic | 50.0% | |
| GAGGTTGAAGAGATTGCCCA+AGG | + | chr8.4:4084399-4084418 | MS.gene060135:CDS | 50.0% | |
| GCCAACAATACATTCCCTCC+TGG | - | chr8.4:4084018-4084037 | None:intergenic | 50.0% | |
| GGAGAAGAGATCGTAGAGGT+TGG | - | chr8.4:4083463-4083482 | None:intergenic | 50.0% | |
| GGGGTTTCCGTAAGATGAAG+AGG | - | chr8.4:4082878-4082897 | None:intergenic | 50.0% | |
| GGTGTGCAGTGGAATTTGAG+GGG | - | chr8.4:4082914-4082933 | None:intergenic | 50.0% | |
| TTATCAGATGAGGCAGCCAG+TGG | + | chr8.4:4084096-4084115 | MS.gene060135:CDS | 50.0% | |
| TTCGATTTCGTTCCGCTCTC+TGG | + | chr8.4:4083052-4083071 | MS.gene060135:CDS | 50.0% | |
| ! | ATCCTACGGATTGACAGTCC+AGG | + | chr8.4:4083997-4084016 | MS.gene060135:CDS | 50.0% |
| ! | GTGTGAATGGTTTGCGATGG+AGG | - | chr8.4:4082843-4082862 | None:intergenic | 50.0% |
| ! | TACGGATTGACAGTCCAGGA+GGG | + | chr8.4:4084001-4084020 | MS.gene060135:CDS | 50.0% |
| ! | TGTGGAGCCATCGATTATGG+AGG | + | chr8.4:4083904-4083923 | MS.gene060135:CDS | 50.0% |
| !!! | GGGGTTTTGAGAGTGGAGTT+TGG | + | chr8.4:4083383-4083402 | MS.gene060135:CDS | 50.0% |
| AGATTGCCCAAGGGCGACTT+TGG | + | chr8.4:4084409-4084428 | MS.gene060135:CDS | 55.0% | |
| CTCCGGAGAAGAGATCGTAG+AGG | - | chr8.4:4083467-4083486 | None:intergenic | 55.0% | |
| CTCCTGGACTGTCAATCCGT+AGG | - | chr8.4:4084002-4084021 | None:intergenic | 55.0% | |
| ! | AGGTTGGTTGATGCGCTAGG+TGG | + | chr8.4:4084456-4084475 | MS.gene060135:CDS | 55.0% |
| ! | CTACGGATTGACAGTCCAGG+AGG | + | chr8.4:4084000-4084019 | MS.gene060135:CDS | 55.0% |
| ACCATGTTCGACACGCTCCG+AGG | - | chr8.4:4083116-4083135 | None:intergenic | 60.0% | |
| ACCGGTCCAAAGTCGCCCTT+GGG | - | chr8.4:4084418-4084437 | None:intergenic | 60.0% | |
| AGGGCGACTTTGGACCGGTA+AGG | + | chr8.4:4084419-4084438 | MS.gene060135:CDS | 60.0% | |
| TACCGGTCCAAAGTCGCCCT+TGG | - | chr8.4:4084419-4084438 | None:intergenic | 60.0% | |
| !! | ACCAGTTGGCACCGACTCTC+AGG | + | chr8.4:4083177-4083196 | MS.gene060135:CDS | 60.0% |
| !! | ACCTGAGAGTCGGTGCCAAC+TGG | - | chr8.4:4083181-4083200 | None:intergenic | 60.0% |
| GCCCAAGGGCGACTTTGGAC+CGG | + | chr8.4:4084414-4084433 | MS.gene060135:CDS | 65.0% | |
| GCCTCGGAGCGTGTCGAACA+TGG | + | chr8.4:4083112-4083131 | MS.gene060135:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 4082797 | 4084563 | 4082797 | ID=MS.gene060135 |
| chr8.4 | mRNA | 4082797 | 4084563 | 4082797 | ID=MS.gene060135.t1;Parent=MS.gene060135 |
| chr8.4 | exon | 4082797 | 4084563 | 4082797 | ID=MS.gene060135.t1.exon1;Parent=MS.gene060135.t1 |
| chr8.4 | CDS | 4082797 | 4084563 | 4082797 | ID=cds.MS.gene060135.t1;Parent=MS.gene060135.t1 |
| Gene Sequence |
| Protein sequence |
