Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58231.t1 | XP_003609465.1 | 91.8 | 502 | 16 | 2 | 1 | 478 | 189 | 689 | 5.60E-263 | 916.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58231.t1 | Q944B6 | 71.2 | 451 | 115 | 3 | 1 | 436 | 169 | 619 | 1.2e-184 | 647.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58231.t1 | G7JGK2 | 91.8 | 502 | 16 | 2 | 1 | 478 | 189 | 689 | 4.0e-263 | 916.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene58231 | 0.808461 | 3.06E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene58231 | 0.808419 | 3.13E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene58231 | 0.801233 | 9.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58231.t1 | MTR_4g115980 | 91.833 | 502 | 16 | 2 | 1 | 478 | 189 | 689 | 0.0 | 942 |
| MS.gene58231.t1 | MTR_4g115980 | 65.017 | 303 | 106 | 0 | 155 | 457 | 46 | 348 | 8.07e-142 | 423 |
| MS.gene58231.t1 | MTR_4g115980 | 91.952 | 497 | 20 | 2 | 1 | 478 | 189 | 684 | 0.0 | 938 |
| MS.gene58231.t1 | MTR_4g115980 | 65.017 | 303 | 106 | 0 | 155 | 457 | 46 | 348 | 8.04e-142 | 422 |
| MS.gene58231.t1 | MTR_4g115980 | 92.464 | 491 | 23 | 3 | 1 | 478 | 189 | 678 | 0.0 | 926 |
| MS.gene58231.t1 | MTR_4g115980 | 65.017 | 303 | 106 | 0 | 155 | 457 | 46 | 348 | 4.67e-142 | 423 |
| MS.gene58231.t1 | MTR_3g071980 | 53.846 | 260 | 116 | 2 | 176 | 435 | 2 | 257 | 7.97e-95 | 288 |
| MS.gene58231.t1 | MTR_3g071980 | 48.571 | 140 | 68 | 1 | 1 | 140 | 124 | 259 | 1.66e-41 | 149 |
| MS.gene58231.t1 | MTR_5g083530 | 54.440 | 259 | 113 | 3 | 178 | 435 | 3 | 257 | 3.14e-94 | 286 |
| MS.gene58231.t1 | MTR_5g083530 | 50.000 | 140 | 66 | 1 | 1 | 140 | 124 | 259 | 2.74e-42 | 151 |
| MS.gene58231.t1 | MTR_3g071980 | 55.785 | 242 | 103 | 2 | 176 | 417 | 2 | 239 | 1.13e-91 | 278 |
| MS.gene58231.t1 | MTR_3g071980 | 55.263 | 114 | 47 | 1 | 1 | 114 | 124 | 233 | 7.38e-39 | 141 |
| MS.gene58231.t1 | MTR_3g071980 | 56.621 | 219 | 91 | 2 | 176 | 394 | 2 | 216 | 7.56e-85 | 260 |
| MS.gene58231.t1 | MTR_3g071980 | 55.670 | 97 | 39 | 1 | 1 | 97 | 124 | 216 | 1.28e-32 | 124 |
| MS.gene58231.t1 | MTR_3g071980 | 57.732 | 194 | 78 | 2 | 176 | 369 | 2 | 191 | 3.80e-75 | 235 |
| MS.gene58231.t1 | MTR_3g071980 | 60.563 | 71 | 24 | 1 | 1 | 71 | 124 | 190 | 4.40e-24 | 100 |
| MS.gene58231.t1 | MTR_3g071980 | 54.545 | 165 | 71 | 2 | 176 | 340 | 2 | 162 | 1.11e-56 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58231.t1 | AT5G34930 | 71.397 | 451 | 114 | 3 | 1 | 436 | 191 | 641 | 0.0 | 659 |
| MS.gene58231.t1 | AT5G34930 | 59.236 | 314 | 120 | 3 | 173 | 478 | 66 | 379 | 1.15e-125 | 380 |
| MS.gene58231.t1 | AT5G34930 | 70.306 | 458 | 121 | 3 | 1 | 443 | 149 | 606 | 0.0 | 659 |
| MS.gene58231.t1 | AT5G34930 | 59.236 | 314 | 120 | 3 | 173 | 478 | 24 | 337 | 3.00e-126 | 380 |
| MS.gene58231.t1 | AT5G34930 | 71.397 | 451 | 114 | 3 | 1 | 436 | 169 | 619 | 0.0 | 658 |
| MS.gene58231.t1 | AT5G34930 | 59.236 | 314 | 120 | 3 | 173 | 478 | 44 | 357 | 7.52e-126 | 380 |
| MS.gene58231.t1 | AT1G15710 | 61.967 | 305 | 116 | 0 | 155 | 459 | 32 | 336 | 1.74e-140 | 408 |
| MS.gene58231.t1 | AT1G15710 | 67.347 | 147 | 48 | 0 | 1 | 147 | 175 | 321 | 8.96e-67 | 219 |
Find 91 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATATCCCTTTGTGTCTAT+TGG | 0.228324 | 8.2:-25941243 | None:intergenic |
| CTCTGATGTGGCTCGGGAAT+TGG | 0.233298 | 8.2:+25940753 | MS.gene58231:CDS |
| AACCATTCGGCACCCTTCTT+TGG | 0.240904 | 8.2:-25941121 | None:intergenic |
| GTATGAATCTTTGTTGAATT+TGG | 0.242967 | 8.2:+25939733 | MS.gene58231:CDS |
| CTCTGTACTCACCCTATGTT+TGG | 0.243282 | 8.2:+25940985 | MS.gene58231:CDS |
| ACATACTGTTGGTAGGGTTT+TGG | 0.269241 | 8.2:+25939670 | MS.gene58231:CDS |
| TGTTGAAGAAACAAGTTTCT+AGG | 0.270162 | 8.2:-25940940 | None:intergenic |
| TATGTTTAATAAGAATTCTT+TGG | 0.276415 | 8.2:+25939802 | MS.gene58231:CDS |
| ATATGAAACTTTATTAAGTT+TGG | 0.287803 | 8.2:+25941260 | MS.gene58231:CDS |
| AAAATTGCAATCATTGGTTT+TGG | 0.292029 | 8.2:+25940655 | MS.gene58231:CDS |
| TCATACCCTTTAGTATTAAT+AGG | 0.314028 | 8.2:-25939716 | None:intergenic |
| GTGCAAAGTAAAATCACTTC+TGG | 0.317402 | 8.2:-25940820 | None:intergenic |
| GATAGCTTTGATCTGTACTA+TGG | 0.319128 | 8.2:+25941300 | MS.gene58231:CDS |
| AAGCTCAAAATTGCAATCAT+TGG | 0.331375 | 8.2:+25940649 | MS.gene58231:CDS |
| ATTTGTTCGCATCCTATGTT+TGG | 0.336142 | 8.2:+25939458 | None:intergenic |
| TCTGATGTGGCTCGGGAATT+GGG | 0.343949 | 8.2:+25940754 | MS.gene58231:CDS |
| TAAGAATTCTTTGGAGATGT+TGG | 0.349313 | 8.2:+25939811 | MS.gene58231:CDS |
| TATTACAGATCAAATGGTTC+TGG | 0.351997 | 8.2:+25940607 | MS.gene58231:CDS |
| TTTGGAGATGTTGGAGAGGT+TGG | 0.355291 | 8.2:+25939820 | MS.gene58231:CDS |
| CAGCCATTGCTTCCACTCTC+AGG | 0.359401 | 8.2:-25939482 | None:intergenic |
| TTAAGTTTGGTGGAGAATAC+TGG | 0.361358 | 8.2:+25941273 | MS.gene58231:CDS |
| GATGTTGGAGAGGTTGGATT+TGG | 0.372198 | 8.2:+25939826 | MS.gene58231:CDS |
| CATGGTTATTACAGATCAAA+TGG | 0.428810 | 8.2:+25940601 | MS.gene58231:CDS |
| TCTGTACTCACCCTATGTTT+GGG | 0.429958 | 8.2:+25940986 | MS.gene58231:CDS |
| CTTGATGTGTTTGGAAGAGA+AGG | 0.431338 | 8.2:+25939581 | MS.gene58231:CDS |
| CCACTCTCTGGCCCAAACAT+AGG | 0.433260 | 8.2:-25940997 | None:intergenic |
| TTCGATAGATACCATGTAAA+CGG | 0.435811 | 8.2:-25941407 | None:intergenic |
| GTACAGAGAACATCAAAATA+AGG | 0.438400 | 8.2:-25940970 | None:intergenic |
| GAGAAGTTTCTTGATGTGTT+TGG | 0.438958 | 8.2:+25939572 | MS.gene58231:CDS |
| GCAACTGCAAAGATTTGATC+TGG | 0.440411 | 8.2:+25941353 | MS.gene58231:CDS |
| TGAAACTTTATTAAGTTTGG+TGG | 0.443320 | 8.2:+25941263 | MS.gene58231:CDS |
| CACATGACATTTCAACCATT+CGG | 0.455410 | 8.2:-25941134 | None:intergenic |
| TCATTACACATACTGTTGGT+AGG | 0.455467 | 8.2:+25939663 | MS.gene58231:CDS |
| CTACACCTATTAATACTAAA+GGG | 0.461298 | 8.2:+25939711 | MS.gene58231:CDS |
| AGCGGCATGCCAATCATGTT+CGG | 0.467134 | 8.2:-25941157 | None:intergenic |
| GAATTGGGAACGATGAAACT+AGG | 0.469059 | 8.2:+25939537 | MS.gene58231:CDS |
| TCATATAGCATCCACGGCAT+TGG | 0.473233 | 8.2:-25941526 | None:intergenic |
| ACATGGTATCTATCGAAAAC+AGG | 0.478214 | 8.2:+25941413 | MS.gene58231:CDS |
| TCTACACCTATTAATACTAA+AGG | 0.484629 | 8.2:+25939710 | MS.gene58231:CDS |
| CTGAGAGTGGAAGCAATGGC+TGG | 0.485617 | 8.2:+25939483 | MS.gene58231:CDS |
| TGTGAGGAAGCAGTTGTTTG+AGG | 0.491108 | 8.2:+25939895 | MS.gene58231:CDS |
| CTACTGTCTTCTGATTTCTC+AGG | 0.493221 | 8.2:-25941486 | None:intergenic |
| CACTCTCTGGCCCAAACATA+GGG | 0.495304 | 8.2:-25940996 | None:intergenic |
| TCAGGCAACATAGATCTCTC+TGG | 0.497335 | 8.2:-25941468 | None:intergenic |
| CATTGCCTATGCAGAGGTTG+AGG | 0.497467 | 8.2:+25940875 | MS.gene58231:CDS |
| CATTACACATACTGTTGGTA+GGG | 0.500312 | 8.2:+25939664 | MS.gene58231:CDS |
| TAGATCTCTCTGGAAAATCA+TGG | 0.506679 | 8.2:-25941458 | None:intergenic |
| TCTGTAATAACCATGTAGTC+TGG | 0.508555 | 8.2:-25940593 | None:intergenic |
| TCTGCTGATGCCAGACTACA+TGG | 0.514877 | 8.2:+25940583 | MS.gene58231:CDS |
| AGACTACTCTGATGTGGCTC+GGG | 0.516024 | 8.2:+25940747 | MS.gene58231:CDS |
| GAACATGATTGGCATGCCGC+TGG | 0.521901 | 8.2:+25941159 | MS.gene58231:CDS |
| AGTGGAAGCAATGGCTGGAA+AGG | 0.522855 | 8.2:+25939488 | MS.gene58231:CDS |
| TGTCATGTGCCGAACATGAT+TGG | 0.533227 | 8.2:+25941148 | MS.gene58231:CDS |
| ACGATGAAACTAGGGTTTCA+AGG | 0.536461 | 8.2:+25939546 | MS.gene58231:CDS |
| TTATTTGATAAAGTCAGAGT+AGG | 0.545161 | 8.2:+25941048 | MS.gene58231:CDS |
| CCTATGTTTGGGCCAGAGAG+TGG | 0.548339 | 8.2:+25940997 | MS.gene58231:CDS |
| CTTGTATAATATAAATGCCA+TGG | 0.549937 | 8.2:+25941329 | MS.gene58231:CDS |
| AATTGGGAACGATGAAACTA+GGG | 0.555673 | 8.2:+25939538 | MS.gene58231:CDS |
| CCACTCTCAGGTCCAAACAT+AGG | 0.557184 | 8.2:-25939470 | None:intergenic |
| AAATCTTTGCAGTTGCTCCA+TGG | 0.565501 | 8.2:-25941346 | None:intergenic |
| CAGACTACTCTGATGTGGCT+CGG | 0.566298 | 8.2:+25940746 | MS.gene58231:CDS |
| TCAATTTCATATAGCATCCA+CGG | 0.574274 | 8.2:-25941532 | None:intergenic |
| GATCATGATAGATATGCAGC+TGG | 0.574527 | 8.2:+25939632 | MS.gene58231:CDS |
| AAGAGAAGGGTGTAGAATGG+TGG | 0.576047 | 8.2:+25939595 | MS.gene58231:CDS |
| CAATTCATTACACATACTGT+TGG | 0.577842 | 8.2:+25939659 | MS.gene58231:CDS |
| GCTTTGTGCTGTCATCCGAC+TGG | 0.586815 | 8.2:-25940630 | None:intergenic |
| ATCAAATGGTTCTGGCCAGT+CGG | 0.589790 | 8.2:+25940615 | MS.gene58231:CDS |
| CCTATGTTTGGACCTGAGAG+TGG | 0.590378 | 8.2:+25939470 | None:intergenic |
| TGGAAGAGAAGGGTGTAGAA+TGG | 0.591930 | 8.2:+25939592 | MS.gene58231:CDS |
| AATTTGGTTGAGAATACTAG+TGG | 0.592301 | 8.2:+25939749 | MS.gene58231:CDS |
| TTAAATCATTGCCTATGCAG+AGG | 0.592977 | 8.2:+25940869 | MS.gene58231:CDS |
| CTTCTCCTCAACCTCTGCAT+AGG | 0.596192 | 8.2:-25940880 | None:intergenic |
| GTTTGGTGGAGAATACTGGT+GGG | 0.596701 | 8.2:+25941277 | MS.gene58231:CDS |
| GCAACACCAATAGACACAAA+GGG | 0.602309 | 8.2:+25941237 | MS.gene58231:CDS |
| ATTTGGTTGAGAATACTAGT+GGG | 0.602707 | 8.2:+25939750 | MS.gene58231:CDS |
| AGTTTGGTGGAGAATACTGG+TGG | 0.605516 | 8.2:+25941276 | MS.gene58231:CDS |
| TTCCAAAGAAGGGTGCCGAA+TGG | 0.611629 | 8.2:+25941119 | MS.gene58231:CDS |
| GGCAACACCAATAGACACAA+AGG | 0.612817 | 8.2:+25941236 | MS.gene58231:CDS |
| CAGTTTATCACACATACCAC+AGG | 0.621402 | 8.2:+25941186 | MS.gene58231:CDS |
| CTCATTTGCATGATGTTGTG+AGG | 0.622338 | 8.2:+25939879 | MS.gene58231:CDS |
| ATTCTTTGGAGATGTTGGAG+AGG | 0.622927 | 8.2:+25939816 | MS.gene58231:CDS |
| TTGATGTGTTTGGAAGAGAA+GGG | 0.623550 | 8.2:+25939582 | MS.gene58231:CDS |
| TTTGGTTGAGAATACTAGTG+GGG | 0.627485 | 8.2:+25939751 | MS.gene58231:CDS |
| CAGAGAACATCAAAATAAGG+TGG | 0.631350 | 8.2:-25940967 | None:intergenic |
| TAGAACAGACTACTCTGATG+TGG | 0.648768 | 8.2:+25940741 | MS.gene58231:CDS |
| ATCATGATAGATATGCAGCT+GGG | 0.652229 | 8.2:+25939633 | MS.gene58231:CDS |
| TTTGGTGGAGAATACTGGTG+GGG | 0.654521 | 8.2:+25941278 | MS.gene58231:CDS |
| GGACCTGAGAGTGGAAGCAA+TGG | 0.666958 | 8.2:+25939479 | MS.gene58231:CDS |
| GAGATGAATCAAGAATATTG+CGG | 0.703500 | 8.2:+25941073 | MS.gene58231:CDS |
| GAAATCAGAAGACAGTAGTG+TGG | 0.713102 | 8.2:+25941491 | MS.gene58231:CDS |
| TGTGATAAACTGTGATCCAG+CGG | 0.727709 | 8.2:-25941175 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAAACTTTATTAAGTT+TGG | + | chr8.2:25941260-25941279 | MS.gene58231:CDS | 15.0% |
| !! | TATGTTTAATAAGAATTCTT+TGG | + | chr8.2:25939802-25939821 | MS.gene58231:CDS | 15.0% |
| !! | CTGACTTTATCAAATAAAAA+AGG | - | chr8.2:25941045-25941064 | None:intergenic | 20.0% |
| !!! | ATTTTTAGAAAAACTGAAGT+TGG | + | chr8.2:25941212-25941231 | MS.gene58231:CDS | 20.0% |
| !!! | GATAGTTTTGATCTTTATTA+TGG | + | chr8.2:25939773-25939792 | MS.gene58231:CDS | 20.0% |
| ! | AGCTTATTTCATAAATGTCA+GGG | - | chr8.2:25940191-25940210 | None:intergenic | 25.0% |
| ! | ATTCAAAATGAGTAACAAGT+AGG | + | chr8.2:25940441-25940460 | MS.gene58231:intron | 25.0% |
| ! | CTACACCTATTAATACTAAA+GGG | + | chr8.2:25939711-25939730 | MS.gene58231:CDS | 25.0% |
| ! | CTTGTATAATATAAATGCCA+TGG | + | chr8.2:25941329-25941348 | MS.gene58231:CDS | 25.0% |
| ! | GTATGAATCTTTGTTGAATT+TGG | + | chr8.2:25939733-25939752 | MS.gene58231:CDS | 25.0% |
| ! | TAGGTAATAATGACCATTTA+TGG | + | chr8.2:25940460-25940479 | MS.gene58231:intron | 25.0% |
| ! | TCATACCCTTTAGTATTAAT+AGG | - | chr8.2:25939719-25939738 | None:intergenic | 25.0% |
| ! | TCTACACCTATTAATACTAA+AGG | + | chr8.2:25939710-25939729 | MS.gene58231:CDS | 25.0% |
| ! | TGAAACTTTATTAAGTTTGG+TGG | + | chr8.2:25941263-25941282 | MS.gene58231:CDS | 25.0% |
| ! | TGTTGTTCTTTCATATGAAT+TGG | + | chr8.2:25940369-25940388 | MS.gene58231:intron | 25.0% |
| ! | TTATTTGATAAAGTCAGAGT+AGG | + | chr8.2:25941048-25941067 | MS.gene58231:CDS | 25.0% |
| ! | TTTACGAAAAAGTTCGAATT+GGG | + | chr8.2:25939522-25939541 | MS.gene58231:CDS | 25.0% |
| !!! | AAAATTGCAATCATTGGTTT+TGG | + | chr8.2:25940655-25940674 | MS.gene58231:CDS | 25.0% |
| !!! | TTGACATTTTTTCCAAAGAA+GGG | + | chr8.2:25941109-25941128 | MS.gene58231:CDS | 25.0% |
| !!! | TTTTTCTAAAAATCTTCCTG+TGG | - | chr8.2:25941205-25941224 | None:intergenic | 25.0% |
| AAGCTCAAAATTGCAATCAT+TGG | + | chr8.2:25940649-25940668 | MS.gene58231:CDS | 30.0% | |
| AATTTGGTTGAGAATACTAG+TGG | + | chr8.2:25939749-25939768 | MS.gene58231:CDS | 30.0% | |
| ATTTGGTTGAGAATACTAGT+GGG | + | chr8.2:25939750-25939769 | MS.gene58231:CDS | 30.0% | |
| CAAAAACTATTGTACGTCAT+GGG | + | chr8.2:25940698-25940717 | MS.gene58231:CDS | 30.0% | |
| CAATTCATTACACATACTGT+TGG | + | chr8.2:25939659-25939678 | MS.gene58231:CDS | 30.0% | |
| CAGCTTATTTCATAAATGTC+AGG | - | chr8.2:25940192-25940211 | None:intergenic | 30.0% | |
| CATGGTTATTACAGATCAAA+TGG | + | chr8.2:25940601-25940620 | MS.gene58231:CDS | 30.0% | |
| GAGATGAATCAAGAATATTG+CGG | + | chr8.2:25941073-25941092 | MS.gene58231:CDS | 30.0% | |
| GTACAGAGAACATCAAAATA+AGG | - | chr8.2:25940973-25940992 | None:intergenic | 30.0% | |
| GTTTACGAAAAAGTTCGAAT+TGG | + | chr8.2:25939521-25939540 | MS.gene58231:CDS | 30.0% | |
| TATTACAGATCAAATGGTTC+TGG | + | chr8.2:25940607-25940626 | MS.gene58231:CDS | 30.0% | |
| TCATATGAATTGGATATGCT+TGG | + | chr8.2:25940379-25940398 | MS.gene58231:intron | 30.0% | |
| TCTTAAATGCTCTCCATAAA+TGG | - | chr8.2:25940476-25940495 | None:intergenic | 30.0% | |
| TGTTGAAGAAACAAGTTTCT+AGG | - | chr8.2:25940943-25940962 | None:intergenic | 30.0% | |
| TTCGATAGATACCATGTAAA+CGG | - | chr8.2:25941410-25941429 | None:intergenic | 30.0% | |
| TTTAGAAAAACTGAAGTTGG+AGG | + | chr8.2:25941215-25941234 | MS.gene58231:CDS | 30.0% | |
| ! | AAATGAACACCTCTGATTTT+TGG | - | chr8.2:25940008-25940027 | None:intergenic | 30.0% |
| ! | ATTAAGTTGTTCATCCAAAC+AGG | - | chr8.2:25940077-25940096 | None:intergenic | 30.0% |
| ! | TAAGAATTCTTTGGAGATGT+TGG | + | chr8.2:25939811-25939830 | MS.gene58231:CDS | 30.0% |
| ! | TTAAGTTGTTCATCCAAACA+GGG | - | chr8.2:25940076-25940095 | None:intergenic | 30.0% |
| !!! | CGAACTTTTTCGTAAACAAA+AGG | - | chr8.2:25939518-25939537 | None:intergenic | 30.0% |
| !!! | CTTGACATTTTTTCCAAAGA+AGG | + | chr8.2:25941108-25941127 | MS.gene58231:CDS | 30.0% |
| !!! | TCTGTTTTGTTATTCTTGTG+CGG | + | chr8.2:25940280-25940299 | MS.gene58231:intron | 30.0% |
| !!! | TTTTGTTTTTGTTACTTGCG+AGG | + | chr8.2:25940506-25940525 | MS.gene58231:intron | 30.0% |
| AATTGGGAACGATGAAACTA+GGG | + | chr8.2:25939538-25939557 | MS.gene58231:CDS | 35.0% | |
| ACATGGTATCTATCGAAAAC+AGG | + | chr8.2:25941413-25941432 | MS.gene58231:CDS | 35.0% | |
| ATCATGATAGATATGCAGCT+GGG | + | chr8.2:25939633-25939652 | MS.gene58231:CDS | 35.0% | |
| CACATGACATTTCAACCATT+CGG | - | chr8.2:25941137-25941156 | None:intergenic | 35.0% | |
| CAGAGAACATCAAAATAAGG+TGG | - | chr8.2:25940970-25940989 | None:intergenic | 35.0% | |
| CATTACACATACTGTTGGTA+GGG | + | chr8.2:25939664-25939683 | MS.gene58231:CDS | 35.0% | |
| GAGAAGTTTCTTGATGTGTT+TGG | + | chr8.2:25939572-25939591 | MS.gene58231:CDS | 35.0% | |
| GCAAAAACTATTGTACGTCA+TGG | + | chr8.2:25940697-25940716 | MS.gene58231:CDS | 35.0% | |
| GTGCAAAGTAAAATCACTTC+TGG | - | chr8.2:25940823-25940842 | None:intergenic | 35.0% | |
| TCATATCCCTTTGTGTCTAT+TGG | - | chr8.2:25941246-25941265 | None:intergenic | 35.0% | |
| TCATTACACATACTGTTGGT+AGG | + | chr8.2:25939663-25939682 | MS.gene58231:CDS | 35.0% | |
| TCTGTAATAACCATGTAGTC+TGG | - | chr8.2:25940596-25940615 | None:intergenic | 35.0% | |
| TGTTATCCTCCAAAAATCAG+AGG | + | chr8.2:25939996-25940015 | MS.gene58231:intron | 35.0% | |
| TTAAATCATTGCCTATGCAG+AGG | + | chr8.2:25940869-25940888 | MS.gene58231:CDS | 35.0% | |
| TTGATGTGTTTGGAAGAGAA+GGG | + | chr8.2:25939582-25939601 | MS.gene58231:CDS | 35.0% | |
| TTTGGTTGAGAATACTAGTG+GGG | + | chr8.2:25939751-25939770 | MS.gene58231:CDS | 35.0% | |
| ! | GACGTACAATAGTTTTTGCA+AGG | - | chr8.2:25940696-25940715 | None:intergenic | 35.0% |
| ! | TAGATCTCTCTGGAAAATCA+TGG | - | chr8.2:25941461-25941480 | None:intergenic | 35.0% |
| ! | TTAAGTTTGGTGGAGAATAC+TGG | + | chr8.2:25941273-25941292 | MS.gene58231:CDS | 35.0% |
| !! | GATAGCTTTGATCTGTACTA+TGG | + | chr8.2:25941300-25941319 | MS.gene58231:CDS | 35.0% |
| !! | TATGCTTGGTCTTAATGTGA+TGG | + | chr8.2:25940393-25940412 | MS.gene58231:intron | 35.0% |
| !!! | ATCATTGGTTTTGGCAACTT+TGG | + | chr8.2:25940664-25940683 | MS.gene58231:CDS | 35.0% |
| !!! | ATTTGGCTTTTGAGGATTTG+AGG | + | chr8.2:25939843-25939862 | MS.gene58231:CDS | 35.0% |
| !!! | CGAGGTTGTTGTTTTAAATC+TGG | + | chr8.2:25940524-25940543 | MS.gene58231:intron | 35.0% |
| !!! | CTGTTTTGTTATTCTTGTGC+GGG | + | chr8.2:25940281-25940300 | MS.gene58231:intron | 35.0% |
| AAATCTTTGCAGTTGCTCCA+TGG | - | chr8.2:25941349-25941368 | None:intergenic | 40.0% | |
| AACCATGTAGTCAGAAAGCA+TGG | + | chr8.2:25939953-25939972 | MS.gene58231:intron | 40.0% | |
| ACGATGAAACTAGGGTTTCA+AGG | + | chr8.2:25939546-25939565 | MS.gene58231:CDS | 40.0% | |
| AGTGGAAAAAATGGGTGGAA+GGG | + | chr8.2:25941015-25941034 | MS.gene58231:CDS | 40.0% | |
| ATTCTTGTGCGGGTATGATA+GGG | + | chr8.2:25940291-25940310 | MS.gene58231:intron | 40.0% | |
| CAGTTTATCACACATACCAC+AGG | + | chr8.2:25941186-25941205 | MS.gene58231:CDS | 40.0% | |
| CTACTGTCTTCTGATTTCTC+AGG | - | chr8.2:25941489-25941508 | None:intergenic | 40.0% | |
| CTCATTTGCATGATGTTGTG+AGG | + | chr8.2:25939879-25939898 | MS.gene58231:CDS | 40.0% | |
| CTTGATGTGTTTGGAAGAGA+AGG | + | chr8.2:25939581-25939600 | MS.gene58231:CDS | 40.0% | |
| GAAATCAGAAGACAGTAGTG+TGG | + | chr8.2:25941491-25941510 | MS.gene58231:CDS | 40.0% | |
| GAATTGGGAACGATGAAACT+AGG | + | chr8.2:25939537-25939556 | MS.gene58231:CDS | 40.0% | |
| GATCATGATAGATATGCAGC+TGG | + | chr8.2:25939632-25939651 | MS.gene58231:CDS | 40.0% | |
| GCAACACCAATAGACACAAA+GGG | + | chr8.2:25941237-25941256 | MS.gene58231:CDS | 40.0% | |
| GCAACTGCAAAGATTTGATC+TGG | + | chr8.2:25941353-25941372 | MS.gene58231:CDS | 40.0% | |
| GCTGTAAAGGTCCAATCTTT+GGG | + | chr8.2:25939920-25939939 | MS.gene58231:intron | 40.0% | |
| GTTGTTTGAGGATGCTGTAA+AGG | + | chr8.2:25939907-25939926 | MS.gene58231:intron | 40.0% | |
| TAGAACAGACTACTCTGATG+TGG | + | chr8.2:25940741-25940760 | MS.gene58231:CDS | 40.0% | |
| TAGTGCATTATTGCCCTGTT+TGG | + | chr8.2:25940060-25940079 | MS.gene58231:intron | 40.0% | |
| TATTCTTGTGCGGGTATGAT+AGG | + | chr8.2:25940290-25940309 | MS.gene58231:intron | 40.0% | |
| TCTGTACTCACCCTATGTTT+GGG | + | chr8.2:25940986-25941005 | MS.gene58231:CDS | 40.0% | |
| TGCTGTAAAGGTCCAATCTT+TGG | + | chr8.2:25939919-25939938 | MS.gene58231:intron | 40.0% | |
| TGTGATAAACTGTGATCCAG+CGG | - | chr8.2:25941178-25941197 | None:intergenic | 40.0% | |
| TGTTATCAGCACCCAAAGAT+TGG | - | chr8.2:25939934-25939953 | None:intergenic | 40.0% | |
| ! | ATCTTCTTTTTCCAATGCCG+TGG | + | chr8.2:25941515-25941534 | MS.gene58231:CDS | 40.0% |
| ! | ATTCTTTGGAGATGTTGGAG+AGG | + | chr8.2:25939816-25939835 | MS.gene58231:CDS | 40.0% |
| ! | CAGCTTTTTGACCGTTTACA+TGG | + | chr8.2:25941396-25941415 | MS.gene58231:CDS | 40.0% |
| ! | GGTCTTAATGTGATGGAACA+AGG | + | chr8.2:25940400-25940419 | MS.gene58231:intron | 40.0% |
| ! | GTCAGAAAGCATGGTCAAAA+TGG | + | chr8.2:25939962-25939981 | MS.gene58231:intron | 40.0% |
| !! | ACATACTGTTGGTAGGGTTT+TGG | + | chr8.2:25939670-25939689 | MS.gene58231:CDS | 40.0% |
| !! | CATACTGTTGGTAGGGTTTT+GGG | + | chr8.2:25939671-25939690 | MS.gene58231:CDS | 40.0% |
| !! | TGAACACCTCTGATTTTTGG+AGG | - | chr8.2:25940005-25940024 | None:intergenic | 40.0% |
| !!! | GGTTTTGGGTATGTTGATGT+TGG | + | chr8.2:25939685-25939704 | MS.gene58231:CDS | 40.0% |
| CAGAGAGTGGAAAAAATGGG+TGG | + | chr8.2:25941010-25941029 | MS.gene58231:CDS | 45.0% | |
| CTCTGTACTCACCCTATGTT+TGG | + | chr8.2:25940985-25941004 | MS.gene58231:CDS | 45.0% | |
| GACCATGCTTTCTGACTACA+TGG | - | chr8.2:25939958-25939977 | None:intergenic | 45.0% | |
| GAGTGGAAAAAATGGGTGGA+AGG | + | chr8.2:25941014-25941033 | MS.gene58231:CDS | 45.0% | |
| GATGTTGGAGAGGTTGGATT+TGG | + | chr8.2:25939826-25939845 | MS.gene58231:CDS | 45.0% | |
| GGCAACACCAATAGACACAA+AGG | + | chr8.2:25941236-25941255 | MS.gene58231:CDS | 45.0% | |
| GGCCAGAGAGTGGAAAAAAT+GGG | + | chr8.2:25941007-25941026 | MS.gene58231:CDS | 45.0% | |
| TCAGGCAACATAGATCTCTC+TGG | - | chr8.2:25941471-25941490 | None:intergenic | 45.0% | |
| TCATATAGCATCCACGGCAT+TGG | - | chr8.2:25941529-25941548 | None:intergenic | 45.0% | |
| TGTCATGTGCCGAACATGAT+TGG | + | chr8.2:25941148-25941167 | MS.gene58231:CDS | 45.0% | |
| TGTGAGGAAGCAGTTGTTTG+AGG | + | chr8.2:25939895-25939914 | MS.gene58231:CDS | 45.0% | |
| TTCTTGTGCGGGTATGATAG+GGG | + | chr8.2:25940292-25940311 | MS.gene58231:intron | 45.0% | |
| TTTGGAGATGTTGGAGAGGT+TGG | + | chr8.2:25939820-25939839 | MS.gene58231:CDS | 45.0% | |
| TTTGGTGGAGAATACTGGTG+GGG | + | chr8.2:25941278-25941297 | MS.gene58231:CDS | 45.0% | |
| ! | AAGAGAAGGGTGTAGAATGG+TGG | + | chr8.2:25939595-25939614 | MS.gene58231:CDS | 45.0% |
| ! | AGTTTGGTGGAGAATACTGG+TGG | + | chr8.2:25941276-25941295 | MS.gene58231:CDS | 45.0% |
| ! | GTTTGGTGGAGAATACTGGT+GGG | + | chr8.2:25941277-25941296 | MS.gene58231:CDS | 45.0% |
| ! | TGGAAGAGAAGGGTGTAGAA+TGG | + | chr8.2:25939592-25939611 | MS.gene58231:CDS | 45.0% |
| !! | ATCAAATGGTTCTGGCCAGT+CGG | + | chr8.2:25940615-25940634 | MS.gene58231:CDS | 45.0% |
| !!! | CACCCATTTTTTCCACTCTC+TGG | - | chr8.2:25941012-25941031 | None:intergenic | 45.0% |
| !!! | GAGGTTGGATTTGGCTTTTG+AGG | + | chr8.2:25939835-25939854 | MS.gene58231:CDS | 45.0% |
| AACCATTCGGCACCCTTCTT+TGG | - | chr8.2:25941124-25941143 | None:intergenic | 50.0% | |
| AGACTACTCTGATGTGGCTC+GGG | + | chr8.2:25940747-25940766 | MS.gene58231:CDS | 50.0% | |
| AGCGGCATGCCAATCATGTT+CGG | - | chr8.2:25941160-25941179 | None:intergenic | 50.0% | |
| AGTGGAAGCAATGGCTGGAA+AGG | + | chr8.2:25939488-25939507 | MS.gene58231:CDS | 50.0% | |
| CACTCTCTGGCCCAAACATA+GGG | - | chr8.2:25940999-25941018 | None:intergenic | 50.0% | |
| CAGACTACTCTGATGTGGCT+CGG | + | chr8.2:25940746-25940765 | MS.gene58231:CDS | 50.0% | |
| CATTGCCTATGCAGAGGTTG+AGG | + | chr8.2:25940875-25940894 | MS.gene58231:CDS | 50.0% | |
| CTTCTCCTCAACCTCTGCAT+AGG | - | chr8.2:25940883-25940902 | None:intergenic | 50.0% | |
| GGGCCAGAGAGTGGAAAAAA+TGG | + | chr8.2:25941006-25941025 | MS.gene58231:CDS | 50.0% | |
| TCTGCTGATGCCAGACTACA+TGG | + | chr8.2:25940583-25940602 | MS.gene58231:CDS | 50.0% | |
| TCTTGTGCGGGTATGATAGG+GGG | + | chr8.2:25940293-25940312 | MS.gene58231:intron | 50.0% | |
| ! | TCTGATGTGGCTCGGGAATT+GGG | + | chr8.2:25940754-25940773 | MS.gene58231:CDS | 50.0% |
| !! | TTCCAAAGAAGGGTGCCGAA+TGG | + | chr8.2:25941119-25941138 | MS.gene58231:CDS | 50.0% |
| CAGCCATTGCTTCCACTCTC+AGG | - | chr8.2:25939485-25939504 | None:intergenic | 55.0% | |
| CCACTCTCTGGCCCAAACAT+AGG | - | chr8.2:25941000-25941019 | None:intergenic | 55.0% | |
| CCTATGTTTGGGCCAGAGAG+TGG | + | chr8.2:25940997-25941016 | MS.gene58231:CDS | 55.0% | |
| CTGAGAGTGGAAGCAATGGC+TGG | + | chr8.2:25939483-25939502 | MS.gene58231:CDS | 55.0% | |
| GAACATGATTGGCATGCCGC+TGG | + | chr8.2:25941159-25941178 | MS.gene58231:CDS | 55.0% | |
| GCTTTGTGCTGTCATCCGAC+TGG | - | chr8.2:25940633-25940652 | None:intergenic | 55.0% | |
| GGACCTGAGAGTGGAAGCAA+TGG | + | chr8.2:25939479-25939498 | MS.gene58231:CDS | 55.0% | |
| ! | CTCTGATGTGGCTCGGGAAT+TGG | + | chr8.2:25940753-25940772 | MS.gene58231:CDS | 55.0% |
| TGCGGGTATGATAGGGGGAG+TGG | + | chr8.2:25940298-25940317 | MS.gene58231:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 25939473 | 25941548 | 25939473 | ID=MS.gene58231 |
| chr8.2 | mRNA | 25939473 | 25941548 | 25939473 | ID=MS.gene58231.t1;Parent=MS.gene58231 |
| chr8.2 | exon | 25939473 | 25939922 | 25939473 | ID=MS.gene58231.t1.exon1;Parent=MS.gene58231.t1 |
| chr8.2 | CDS | 25939473 | 25939922 | 25939473 | ID=cds.MS.gene58231.t1;Parent=MS.gene58231.t1 |
| chr8.2 | exon | 25940559 | 25941548 | 25940559 | ID=MS.gene58231.t1.exon2;Parent=MS.gene58231.t1 |
| chr8.2 | CDS | 25940559 | 25941548 | 25940559 | ID=cds.MS.gene58231.t1;Parent=MS.gene58231.t1 |
| Gene Sequence |
| Protein sequence |
