AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056091


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056091.t1 MTR_1g083740 99.057 212 2 0 1 212 1 212 6.72e-158 435
MS.gene056091.t1 MTR_1g083740 97.895 190 4 0 1 190 1 190 6.95e-140 389
MS.gene056091.t1 MTR_4g111750 37.838 111 56 2 70 174 96 199 3.82e-20 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056091.t1 AT4G11060 64.623 212 64 1 1 212 1 201 4.41e-96 278
MS.gene056091.t1 AT3G18580 34.328 134 82 1 81 208 79 212 5.12e-25 97.8

Find 60 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATAATGATAGTATTAA+TGG 0.220262 1.4:-67718382 MS.gene056091:CDS
AAGCATAACACCGCGCTTCT+TGG 0.262538 1.4:+67719937 None:intergenic
CTCCTGTACAGAAGATATTA+AGG 0.303441 1.4:-67718681 MS.gene056091:CDS
CAGCCTTCACGTGATAATAA+TGG 0.318951 1.4:-67719883 MS.gene056091:CDS
CGATGCCACTGAGCAGGTTT+AGG 0.364625 1.4:+67718580 None:intergenic
ACGAAATCCCCAACCTCTAC+TGG 0.367940 1.4:+67719780 None:intergenic
CAGGGAAACTTCGCCTCATC+AGG 0.382684 1.4:-67716873 MS.gene056091:CDS
ACCATCTTTACAGTTGGAAC+GGG 0.406475 1.4:-67718643 MS.gene056091:CDS
GCAATTATTTGTGGTAAAGT+TGG 0.434965 1.4:-67718709 MS.gene056091:CDS
TGTTGATCCCAGTAGAGGTT+GGG 0.439046 1.4:-67719788 MS.gene056091:CDS
TACAGAAGATATTAAGGAAT+GGG 0.441398 1.4:-67718675 MS.gene056091:CDS
AGCCTTCACGTGATAATAAT+GGG 0.443255 1.4:-67719882 MS.gene056091:CDS
TCAAAACAGGCAATTATTTG+TGG 0.443764 1.4:-67718718 MS.gene056091:intron
GAGCGTTGATAAAACTTCCT+TGG 0.447768 1.4:-67716842 MS.gene056091:CDS
ATGTATGACCAGAGAATTGT+AGG 0.461425 1.4:-67718616 MS.gene056091:CDS
CCTTTGATCCTACAATTCTC+TGG 0.461876 1.4:+67718608 None:intergenic
TCACGACGAACGCATATCTC+TGG 0.465546 1.4:+67718343 None:intergenic
TTCCTTAATATCTTCTGTAC+AGG 0.466214 1.4:+67718679 None:intergenic
AAGGCCCGAGTTACAGCTGC+AGG 0.468832 1.4:-67719812 MS.gene056091:CDS
GATGAGTTTGATGATTTCCT+TGG 0.477482 1.4:-67719838 MS.gene056091:CDS
ATATCTTCTGTACAGGAGCT+TGG 0.479615 1.4:+67718686 None:intergenic
AGAAGAGCGTCGAAGATGCT+TGG 0.484612 1.4:+67720179 None:intergenic
GAGATATGCGTTCGTCGTGA+TGG 0.485219 1.4:-67718340 MS.gene056091:intron
GTTGATCCCAGTAGAGGTTG+GGG 0.487051 1.4:-67719787 MS.gene056091:CDS
AACACCCTGCAGCTGTAACT+CGG 0.490793 1.4:+67719807 None:intergenic
CCCCGTTCCAACTGTAAAGA+TGG 0.496834 1.4:+67718642 None:intergenic
TTGATGATTTCCTTGGTGGA+AGG 0.507897 1.4:-67719831 MS.gene056091:CDS
AGTTCTTCAGTGTATGTTGA+GGG 0.511485 1.4:-67718421 MS.gene056091:CDS
AGTAGAGGTTGGGGATTTCG+TGG 0.523166 1.4:-67719778 MS.gene056091:CDS
ACACCCTGCAGCTGTAACTC+GGG 0.523237 1.4:+67719808 None:intergenic
GCGGTGCATAATGAAGTACT+AGG 0.526504 1.4:-67718553 MS.gene056091:CDS
CATCTTCGACGCTCTTCTCA+CGG 0.526813 1.4:-67720174 MS.gene056091:intron
ATCTTTACAGTTGGAACGGG+GGG 0.528265 1.4:-67718640 MS.gene056091:CDS
CGCTCTCTCCACTCCTGATG+AGG 0.530931 1.4:+67716860 None:intergenic
CGAAATCCCCAACCTCTACT+GGG 0.532770 1.4:+67719781 None:intergenic
CCAGAGAATTGTAGGATCAA+AGG 0.533594 1.4:-67718608 MS.gene056091:CDS
GCAATGCGATGCCACTGAGC+AGG 0.538443 1.4:+67718574 None:intergenic
AATGTGACCATCTTTACAGT+TGG 0.540656 1.4:-67718649 MS.gene056091:CDS
GAGTTTGATGATTTCCTTGG+TGG 0.553736 1.4:-67719835 MS.gene056091:CDS
GACCATCTTTACAGTTGGAA+CGG 0.555814 1.4:-67718644 MS.gene056091:CDS
GTGTTGATCCCAGTAGAGGT+TGG 0.561168 1.4:-67719789 MS.gene056091:CDS
GTACAGAAGATATTAAGGAA+TGG 0.564034 1.4:-67718676 MS.gene056091:CDS
AGCCCATTATTATCACGTGA+AGG 0.565033 1.4:+67719880 None:intergenic
GGGATTTCGTGGTGTGCACA+AGG 0.569770 1.4:-67719767 MS.gene056091:intron
CAGTTCTTCAGTGTATGTTG+AGG 0.570927 1.4:-67718422 MS.gene056091:CDS
CGGTGCATAATGAAGTACTA+GGG 0.571828 1.4:-67718552 MS.gene056091:CDS
CCATCTTTACAGTTGGAACG+GGG 0.580438 1.4:-67718642 MS.gene056091:CDS
TTTACGTCTGAAACTGATGC+TGG 0.584180 1.4:-67719907 MS.gene056091:CDS
CAGGGTGTTGATCCCAGTAG+AGG 0.584299 1.4:-67719793 MS.gene056091:CDS
TGCTCAGTGGCATCGCATTG+CGG 0.585757 1.4:-67718572 MS.gene056091:CDS
GAACTTACTAAATTCATCCA+AGG 0.592834 1.4:+67716825 None:intergenic
TCTTTACAGTTGGAACGGGG+GGG 0.613675 1.4:-67718639 MS.gene056091:CDS
CATCTTTACAGTTGGAACGG+GGG 0.616404 1.4:-67718641 MS.gene056091:CDS
AAACTTCGCCTCATCAGGAG+TGG 0.617457 1.4:-67716868 MS.gene056091:CDS
TGATAATAATGGGCTAAACA+AGG 0.618206 1.4:-67719872 MS.gene056091:CDS
AGGCCCGAGTTACAGCTGCA+GGG 0.654687 1.4:-67719811 MS.gene056091:CDS
AGCTTCTGTTCCAAGAAGCG+CGG 0.656924 1.4:-67719947 MS.gene056091:CDS
GTAACTCGGGCCTTCCACCA+AGG 0.696325 1.4:+67719821 None:intergenic
GGTGCATAATGAAGTACTAG+GGG 0.712926 1.4:-67718551 MS.gene056091:CDS
ATTTGCCTAAACCTGCTCAG+TGG 0.717014 1.4:-67718585 MS.gene056091:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAATAATTTAAAAA+AGG + chr1.4:67719288-67719307 None:intergenic 0.0%
!! ATATATATATATATATAAAA+GGG + chr1.4:67718999-67719018 None:intergenic 0.0%
!! ATATATATATATATATATAA+AGG - chr1.4:67719063-67719082 MS.gene056091:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr1.4:67718785-67718804 MS.gene056091:intron 0.0%
!! TATATATATATATATATAAA+AGG + chr1.4:67719083-67719064 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr1.4:67718786-67718805 MS.gene056091:intron 0.0%
!!! TTATTTTACTCATTTAATTT+GGG - chr1.4:67719651-67719670 MS.gene056091:intron 10.0%
!! ATATATCTCAACATAAAATA+AGG + chr1.4:67717752-67717771 None:intergenic 15.0%
!! ATCAGTTTATCTTATATTTA+TGG - chr1.4:67719857-67719876 MS.gene056091:CDS 15.0%
!! GCATAAAATTCAATAATAAA+AGG + chr1.4:67719393-67719412 None:intergenic 15.0%
!! GTTTATAATGATAGTATTAA+TGG - chr1.4:67718461-67718480 MS.gene056091:intron 15.0%
!! TAAAAATAAAAGCTTATGTT+TGG - chr1.4:67717280-67717299 MS.gene056091:intron 15.0%
!! TAATAGTAAATCAATAATGA+AGG + chr1.4:67719443-67719462 None:intergenic 15.0%
!!! CTTATTTTACTCATTTAATT+TGG - chr1.4:67719650-67719669 MS.gene056091:intron 15.0%
!!! TATTTTACTCATTTAATTTG+GGG - chr1.4:67719652-67719671 MS.gene056091:intron 15.0%
!! AAAAAGTAAGTGTTTATACA+AGG - chr1.4:67718338-67718357 MS.gene056091:intron 20.0%
!! AAAAGTAAGTGTTTATACAA+GGG - chr1.4:67718339-67718358 MS.gene056091:intron 20.0%
!! AATCATATTAACATTGATGA+TGG + chr1.4:67719165-67719184 None:intergenic 20.0%
!! GATATGTTATCTATTTAAGT+GGG + chr1.4:67719840-67719859 None:intergenic 20.0%
!! TATATATATAAAGGAACAGA+CGG - chr1.4:67719072-67719091 MS.gene056091:intron 20.0%
!! TGATATGTTATCTATTTAAG+TGG + chr1.4:67719841-67719860 None:intergenic 20.0%
!!! ATCATATTAACATTGATGAT+GGG + chr1.4:67719164-67719183 None:intergenic 20.0%
!!! ATGAGTATTGGAATTAATTA+AGG - chr1.4:67719806-67719825 MS.gene056091:CDS 20.0%
!!! ATGTTGGTCAAATTATTTTT+CGG + chr1.4:67718096-67718115 None:intergenic 20.0%
!!! ATTTAATCAAAACCCTTTTT+TGG - chr1.4:67719309-67719328 MS.gene056091:intron 20.0%
!!! CTTACTTTTTAAAAAGTTGT+TGG + chr1.4:67718328-67718347 None:intergenic 20.0%
! AAAGTAAGTGTTTATACAAG+GGG - chr1.4:67718340-67718359 MS.gene056091:intron 25.0%
! AAATTATCCTAGAGAGTTTA+TGG - chr1.4:67717431-67717450 MS.gene056091:intron 25.0%
! AACGTTAGAAGTTAAATAAG+AGG + chr1.4:67717616-67717635 None:intergenic 25.0%
! ACAAACTATCTTCTATTCTA+AGG + chr1.4:67718007-67718026 None:intergenic 25.0%
! ACACCTTCATAAAAATTAGT+TGG - chr1.4:67718903-67718922 MS.gene056091:intron 25.0%
! ACGTTAGAAGTTAAATAAGA+GGG + chr1.4:67717615-67717634 None:intergenic 25.0%
! AGAAAGCTTAATAAAGAACA+AGG + chr1.4:67718554-67718573 None:intergenic 25.0%
! CCAATATAACTCCAAAAATA+CGG + chr1.4:67720116-67720135 None:intergenic 25.0%
! CTAACGTTATAAAGACTAAT+AGG - chr1.4:67717628-67717647 MS.gene056091:intron 25.0%
! GAAAAATAATTTGACCAACA+TGG - chr1.4:67718095-67718114 MS.gene056091:intron 25.0%
! GCAAAGTTATAACTAAAAAG+TGG + chr1.4:67718877-67718896 None:intergenic 25.0%
! TACAGAAGATATTAAGGAAT+GGG - chr1.4:67718168-67718187 MS.gene056091:intron 25.0%
! TGAATAAGTAGAATCAATTC+TGG - chr1.4:67717925-67717944 MS.gene056091:intron 25.0%
! TTCAACTATTATTTGAACTG+TGG + chr1.4:67719537-67719556 None:intergenic 25.0%
!! ACACCAACTAATTTTTATGA+AGG + chr1.4:67718909-67718928 None:intergenic 25.0%
!! GTTACAATTTTCATGAGTAT+TGG - chr1.4:67719794-67719813 MS.gene056091:CDS 25.0%
!! TTTATTAAGCTTTCTGAGAA+AGG - chr1.4:67718559-67718578 MS.gene056091:CDS 25.0%
!!! ACATTGCTTATTTTTATCTC+TGG - chr1.4:67719599-67719618 MS.gene056091:intron 25.0%
!!! CATTGCTTATTTTTATCTCT+GGG - chr1.4:67719600-67719619 MS.gene056091:intron 25.0%
!!! CGTATTTTTGGAGTTATATT+GGG - chr1.4:67720114-67720133 MS.gene056091:intron 25.0%
!!! GTTGATTGGTTTTTATTACT+GGG - chr1.4:67717110-67717129 MS.gene056091:intron 25.0%
!!! TAACCTAATAAAAGGCATTA+CGG + chr1.4:67718649-67718668 None:intergenic 25.0%
!!! TGTTGATTGGTTTTTATTAC+TGG - chr1.4:67717109-67717128 MS.gene056091:intron 25.0%
!!! TGTTGGTCAAATTATTTTTC+GGG + chr1.4:67718095-67718114 None:intergenic 25.0%
!!! TTTTTATTACTGGGTTTTGT+TGG - chr1.4:67717119-67717138 MS.gene056091:intron 25.0%
AAAACCCAGACAAAAAAATG+GGG + chr1.4:67718685-67718704 None:intergenic 30.0%
AATAGAAGCTAATTTCAACC+TGG + chr1.4:67717573-67717592 None:intergenic 30.0%
ACATACTAAAGTGACTGAAA+AGG + chr1.4:67720084-67720103 None:intergenic 30.0%
ACTGACTAATAAATTCATGC+TGG - chr1.4:67720184-67720203 MS.gene056091:CDS 30.0%
ATAGAAGCTAATTTCAACCT+GGG + chr1.4:67717572-67717591 None:intergenic 30.0%
CAAAACCCAGACAAAAAAAT+GGG + chr1.4:67718686-67718705 None:intergenic 30.0%
CTAAAAGACACCTTCATAAA+AGG - chr1.4:67718896-67718915 MS.gene056091:intron 30.0%
CTAAGTAAACCATCTATATG+CGG + chr1.4:67719370-67719389 None:intergenic 30.0%
CTTAATTCCATAAACTCTCT+AGG + chr1.4:67717441-67717460 None:intergenic 30.0%
CTTCATATGTCTCCAAAAAA+GGG + chr1.4:67719324-67719343 None:intergenic 30.0%
GAACTTACTAAATTCATCCA+AGG + chr1.4:67720021-67720040 None:intergenic 30.0%
GATGCTTCTAACCTAATAAA+AGG + chr1.4:67718657-67718676 None:intergenic 30.0%
GCAATTATTTGTGGTAAAGT+TGG - chr1.4:67718134-67718153 MS.gene056091:intron 30.0%
GTACAGAAGATATTAAGGAA+TGG - chr1.4:67718167-67718186 MS.gene056091:intron 30.0%
TAACATGTCATTAGAAGCAA+AGG + chr1.4:67718057-67718076 None:intergenic 30.0%
TCAAAACAGGCAATTATTTG+TGG - chr1.4:67718125-67718144 MS.gene056091:intron 30.0%
TGTGCAAAGAATACATGTTT+GGG + chr1.4:67719727-67719746 None:intergenic 30.0%
TTAACTTCTAGTCTATGGAA+TGG + chr1.4:67717711-67717730 None:intergenic 30.0%
TTCCTTAATATCTTCTGTAC+AGG + chr1.4:67718167-67718186 None:intergenic 30.0%
TTCGATTAACTTCTAGTCTA+TGG + chr1.4:67717716-67717735 None:intergenic 30.0%
! ATTCAAACTCGTAAAAGTAC+TGG + chr1.4:67717910-67717929 None:intergenic 30.0%
! CATATGAAGGTATGCATTTA+AGG - chr1.4:67719335-67719354 MS.gene056091:intron 30.0%
! CATTTTGTCAAACACTTGTT+AGG - chr1.4:67716779-67716798 MS.gene056091:intron 30.0%
! TATAAAAGGGTTTTGCTAGA+AGG + chr1.4:67718986-67719005 None:intergenic 30.0%
! TATCCGTAATGCCTTTTATT+AGG - chr1.4:67718643-67718662 MS.gene056091:CDS 30.0%
! TGATTTTATCTTGGTGAAGA+GGG - chr1.4:67719754-67719773 MS.gene056091:intron 30.0%
!! TGATAATAATGGGCTAAACA+AGG - chr1.4:67716971-67716990 MS.gene056091:intron 30.0%
!!! CATTTTTTTGTCTGGGTTTT+GGG - chr1.4:67718685-67718704 MS.gene056091:CDS 30.0%
!!! CCGTATTTTTGGAGTTATAT+TGG - chr1.4:67720113-67720132 MS.gene056091:intron 30.0%
!!! CTTTTCATTTCTAGTTTCAC+TGG - chr1.4:67716754-67716773 MS.gene056091:intron 30.0%
AAAGTGGAAATCACACCTTA+AGG + chr1.4:67718861-67718880 None:intergenic 35.0%
AATGTGACCATCTTTACAGT+TGG - chr1.4:67718194-67718213 MS.gene056091:intron 35.0%
ACATAAAATAAGGTCCAGTC+TGG + chr1.4:67717742-67717761 None:intergenic 35.0%
ACTAATAAATTCATGCTGGC+AGG - chr1.4:67720188-67720207 MS.gene056091:CDS 35.0%
AGATTGTTTGAGAGAGCTTA+TGG + chr1.4:67717499-67717518 None:intergenic 35.0%
AGCCTTCACGTGATAATAAT+GGG - chr1.4:67716961-67716980 MS.gene056091:intron 35.0%
AGTTAATCGAAATTCCAGAC+TGG - chr1.4:67717725-67717744 MS.gene056091:intron 35.0%
AGTTCTTCAGTGTATGTTGA+GGG - chr1.4:67718422-67718441 MS.gene056091:CDS 35.0%
ATGTATGACCAGAGAATTGT+AGG - chr1.4:67718227-67718246 MS.gene056091:intron 35.0%
CATGTATTCTTTGCACAGAA+AGG - chr1.4:67719730-67719749 MS.gene056091:intron 35.0%
CCAAAACCCAGACAAAAAAA+TGG + chr1.4:67718687-67718706 None:intergenic 35.0%
CCTTCATATGTCTCCAAAAA+AGG + chr1.4:67719325-67719344 None:intergenic 35.0%
CTCCTGTACAGAAGATATTA+AGG - chr1.4:67718162-67718181 MS.gene056091:intron 35.0%
CTGTGCAAAGAATACATGTT+TGG + chr1.4:67719728-67719747 None:intergenic 35.0%
GATCATAATTTATGTCCTGC+AGG + chr1.4:67719421-67719440 None:intergenic 35.0%
GATTGGGAAACTTATCAAAC+TGG - chr1.4:67719242-67719261 MS.gene056091:intron 35.0%
GTAGAATCAATTCTGGACTA+TGG - chr1.4:67717932-67717951 MS.gene056091:intron 35.0%
TGTCTGCTATGATTGTATAG+TGG - chr1.4:67717808-67717827 MS.gene056091:intron 35.0%
TTCTCCATGTTATCTCTTCA+GGG - chr1.4:67719952-67719971 MS.gene056091:intron 35.0%
TTGCTAAAAGACACCTTCAT+GGG + chr1.4:67718912-67718893 None:intergenic 35.0%
! ACATGGTAGTGATTCAAAAC+AGG - chr1.4:67718112-67718131 MS.gene056091:intron 35.0%
! ACATTGTAGTGGAGAAACAT+AGG - chr1.4:67718717-67718736 MS.gene056091:intron 35.0%
! ATTAAAAGTGTGAACCGAAC+TGG - chr1.4:67719190-67719209 MS.gene056091:intron 35.0%
! CATTGTAGTGGAGAAACATA+GGG - chr1.4:67718718-67718737 MS.gene056091:intron 35.0%
! CTGATTTTATCTTGGTGAAG+AGG - chr1.4:67719753-67719772 MS.gene056091:intron 35.0%
! GATGAGTTTGATGATTTCCT+TGG - chr1.4:67717005-67717024 MS.gene056091:intron 35.0%
!! CAGAAAGGCTGATTTTATCT+TGG - chr1.4:67719745-67719764 MS.gene056091:intron 35.0%
!! GTTTTGAATCACTACCATGT+TGG + chr1.4:67718112-67718131 None:intergenic 35.0%
!!! CCATTTTTTTGTCTGGGTTT+TGG - chr1.4:67718684-67718703 MS.gene056091:CDS 35.0%
!!! CCTTTTTTGGAGACATATGA+AGG - chr1.4:67719322-67719341 MS.gene056091:intron 35.0%
AACTCAGTATGATCCCAACA+TGG + chr1.4:67719928-67719947 None:intergenic 40.0%
AATTTCAACCTGGGTCTGTT+TGG + chr1.4:67717563-67717582 None:intergenic 40.0%
ACCATCTTTACAGTTGGAAC+GGG - chr1.4:67718200-67718219 MS.gene056091:intron 40.0%
ACTCAGTATGATCCCAACAT+GGG + chr1.4:67719927-67719946 None:intergenic 40.0%
AGCCCATTATTATCACGTGA+AGG + chr1.4:67716966-67716985 None:intergenic 40.0%
AGTAGAAATCAGCAACGATG+GGG - chr1.4:67719220-67719239 MS.gene056091:intron 40.0%
AGTTGATCCAAATCATGGTC+AGG + chr1.4:67719139-67719158 None:intergenic 40.0%
ATAAGTGCTCATCATGTACG+TGG - chr1.4:67717331-67717350 MS.gene056091:intron 40.0%
ATATCTTCTGTACAGGAGCT+TGG + chr1.4:67718160-67718179 None:intergenic 40.0%
CAACAGAGCCTAATGTTTGT+TGG + chr1.4:67718585-67718604 None:intergenic 40.0%
CACTTAACCTGACCATGATT+TGG - chr1.4:67719129-67719148 MS.gene056091:intron 40.0%
CAGCCTTCACGTGATAATAA+TGG - chr1.4:67716960-67716979 MS.gene056091:intron 40.0%
CAGTTCTTCAGTGTATGTTG+AGG - chr1.4:67718421-67718440 MS.gene056091:CDS 40.0%
CCAGAGAATTGTAGGATCAA+AGG - chr1.4:67718235-67718254 MS.gene056091:intron 40.0%
CCTTTGATCCTACAATTCTC+TGG + chr1.4:67718238-67718257 None:intergenic 40.0%
CTGTGGCATTTGTATTGCAA+TGG - chr1.4:67719684-67719703 MS.gene056091:intron 40.0%
GAAATCACACCTTAAGGTGT+GGG + chr1.4:67718855-67718874 None:intergenic 40.0%
GACCATCTTTACAGTTGGAA+CGG - chr1.4:67718199-67718218 MS.gene056091:intron 40.0%
GAGAAAGGCCAACAAACATT+AGG - chr1.4:67718574-67718593 MS.gene056091:CDS 40.0%
GAGTAGAAATCAGCAACGAT+GGG - chr1.4:67719219-67719238 MS.gene056091:intron 40.0%
GTTCTCCATGTTATCTCTTC+AGG - chr1.4:67719951-67719970 MS.gene056091:intron 40.0%
GTTGCTAAAAGACACCTTCA+TGG + chr1.4:67718833-67718852 None:intergenic 40.0%
GTTTCCCTGAAGAGATAACA+TGG + chr1.4:67719959-67719978 None:intergenic 40.0%
TAAACCATCTATATGCGGAC+AGG + chr1.4:67719365-67719384 None:intergenic 40.0%
TGAGTAGAAATCAGCAACGA+TGG - chr1.4:67719218-67719237 MS.gene056091:intron 40.0%
TTCTACTCAAACTGCCAGTT+CGG + chr1.4:67719207-67719226 None:intergenic 40.0%
! AATTTTATGCTGTAGCCTGC+AGG - chr1.4:67719403-67719422 MS.gene056091:intron 40.0%
! AGGTACTGTGTGTTGTTGAT+TGG - chr1.4:67717096-67717115 MS.gene056091:intron 40.0%
! CGGTGCATAATGAAGTACTA+GGG - chr1.4:67718291-67718310 MS.gene056091:intron 40.0%
! GAGTTTGATGATTTCCTTGG+TGG - chr1.4:67717008-67717027 MS.gene056091:intron 40.0%
! GGGAAAGTTGATCCAAATCA+TGG + chr1.4:67719144-67719163 None:intergenic 40.0%
! GGTGCATAATGAAGTACTAG+GGG - chr1.4:67718292-67718311 MS.gene056091:intron 40.0%
! GTGAGTTGTGACCGTATTTT+TGG - chr1.4:67720102-67720121 MS.gene056091:intron 40.0%
! TTGATGATTTCCTTGGTGGA+AGG - chr1.4:67717012-67717031 MS.gene056091:intron 40.0%
! TTTACGTCTGAAACTGATGC+TGG - chr1.4:67716936-67716955 MS.gene056091:intron 40.0%
! TTTTAGCAACCCACACCTTA+AGG - chr1.4:67718843-67718862 MS.gene056091:intron 40.0%
! TTTTGTTGGCATCTCTAGCA+TGG - chr1.4:67717133-67717152 MS.gene056091:intron 40.0%
!! ACTCGTAAAAGTACTGGTTC+TGG + chr1.4:67717904-67717923 None:intergenic 40.0%
!! AGCTTGTTTCTGCATTCAGA+GGG - chr1.4:67718747-67718766 MS.gene056091:intron 40.0%
!! AGTTTGTTGTTGCCCATGTT+GGG - chr1.4:67719912-67719931 MS.gene056091:CDS 40.0%
!! GAGCGTTGATAAAACTTCCT+TGG - chr1.4:67720001-67720020 MS.gene056091:intron 40.0%
!! TAGCTTGTTTCTGCATTCAG+AGG - chr1.4:67718746-67718765 MS.gene056091:intron 40.0%
!! TAGTTTGTTGTTGCCCATGT+TGG - chr1.4:67719911-67719930 MS.gene056091:CDS 40.0%
!!! AAGCTCCCCATTTTTTTGTC+TGG - chr1.4:67718677-67718696 MS.gene056091:CDS 40.0%
!!! AGCTCCCCATTTTTTTGTCT+GGG - chr1.4:67718678-67718697 MS.gene056091:CDS 40.0%
!!! CTAGAAGGCACCTTTTATGA+AGG + chr1.4:67718971-67718990 None:intergenic 40.0%
AAATCAGCAACGATGGGGAT+TGG - chr1.4:67719225-67719244 MS.gene056091:intron 45.0%
AAATTCATGCTGGCAGGAGA+GGG - chr1.4:67720194-67720213 MS.gene056091:CDS 45.0%
AATCAGCAACGATGGGGATT+GGG - chr1.4:67719226-67719245 MS.gene056091:intron 45.0%
ATCTTTACAGTTGGAACGGG+GGG - chr1.4:67718203-67718222 MS.gene056091:intron 45.0%
ATTTGCCTAAACCTGCTCAG+TGG - chr1.4:67718258-67718277 MS.gene056091:intron 45.0%
CATCTTTACAGTTGGAACGG+GGG - chr1.4:67718202-67718221 MS.gene056091:intron 45.0%
CCATCTTTACAGTTGGAACG+GGG - chr1.4:67718201-67718220 MS.gene056091:intron 45.0%
CTAAAAGACACCTTCATGGG+TGG + chr1.4:67718829-67718848 None:intergenic 45.0%
GGAAATCACACCTTAAGGTG+TGG + chr1.4:67718856-67718875 None:intergenic 45.0%
GGAGAGTAGGAACATTGTAG+TGG - chr1.4:67718706-67718725 MS.gene056091:CDS 45.0%
TAAATTCATGCTGGCAGGAG+AGG - chr1.4:67720193-67720212 MS.gene056091:CDS 45.0%
TGTTGATCCCAGTAGAGGTT+GGG - chr1.4:67717055-67717074 MS.gene056091:intron 45.0%
TTCACCTGTCCGCATATAGA+TGG - chr1.4:67719358-67719377 MS.gene056091:intron 45.0%
TTGGCATCTCTAGCATGGAA+TGG - chr1.4:67717138-67717157 MS.gene056091:intron 45.0%
! AAGTTGATCCAAACAGACCC+AGG - chr1.4:67717552-67717571 MS.gene056091:intron 45.0%
! ACAGACGGTGTGCTTTTACA+CGG - chr1.4:67719087-67719106 MS.gene056091:intron 45.0%
! GCGGTGCATAATGAAGTACT+AGG - chr1.4:67718290-67718309 MS.gene056091:intron 45.0%
!! TGGGTTTGTTGTGCTGTATG+AGG - chr1.4:67719619-67719638 MS.gene056091:intron 45.0%
AAACTTCGCCTCATCAGGAG+TGG - chr1.4:67719975-67719994 MS.gene056091:intron 50.0%
AACACCCTGCAGCTGTAACT+CGG + chr1.4:67717039-67717058 None:intergenic 50.0%
AAGCATAACACCGCGCTTCT+TGG + chr1.4:67716909-67716928 None:intergenic 50.0%
ACGAAATCCCCAACCTCTAC+TGG + chr1.4:67717066-67717085 None:intergenic 50.0%
AGCTTCTGTTCCAAGAAGCG+CGG - chr1.4:67716896-67716915 MS.gene056091:intron 50.0%
AGTAGAGGTTGGGGATTTCG+TGG - chr1.4:67717065-67717084 MS.gene056091:intron 50.0%
ATGCGTTCGTCGTGATGGTA+CGG - chr1.4:67718508-67718527 MS.gene056091:intron 50.0%
ATTTGGGGACAAATGCGCTG+TGG - chr1.4:67719667-67719686 MS.gene056091:intron 50.0%
CATCTTCGACGCTCTTCTCA+CGG - chr1.4:67716669-67716688 MS.gene056091:intron 50.0%
CCCCGTTCCAACTGTAAAGA+TGG + chr1.4:67718204-67718223 None:intergenic 50.0%
CGAAATCCCCAACCTCTACT+GGG + chr1.4:67717065-67717084 None:intergenic 50.0%
GAGATATGCGTTCGTCGTGA+TGG - chr1.4:67718503-67718522 MS.gene056091:intron 50.0%
GTTGATCCCAGTAGAGGTTG+GGG - chr1.4:67717056-67717075 MS.gene056091:intron 50.0%
TCACGACGAACGCATATCTC+TGG + chr1.4:67718503-67718522 None:intergenic 50.0%
TCTTTACAGTTGGAACGGGG+GGG - chr1.4:67718204-67718223 MS.gene056091:intron 50.0%
TTGCTAGAAGCCACCCATGA+AGG - chr1.4:67718816-67718835 MS.gene056091:intron 50.0%
! GTGTTGATCCCAGTAGAGGT+TGG - chr1.4:67717054-67717073 MS.gene056091:intron 50.0%
!! AGAAGAGCGTCGAAGATGCT+TGG + chr1.4:67716667-67716686 None:intergenic 50.0%
!!! TGTCTGGGTTTTGGGAGAGT+AGG - chr1.4:67718693-67718712 MS.gene056091:CDS 50.0%
ACACCCTGCAGCTGTAACTC+GGG + chr1.4:67717038-67717057 None:intergenic 55.0%
CAGGGAAACTTCGCCTCATC+AGG - chr1.4:67719970-67719989 MS.gene056091:intron 55.0%
CGATGCCACTGAGCAGGTTT+AGG + chr1.4:67718266-67718285 None:intergenic 55.0%
GGGATTTCGTGGTGTGCACA+AGG - chr1.4:67717076-67717095 MS.gene056091:intron 55.0%
TGCTCAGTGGCATCGCATTG+CGG - chr1.4:67718271-67718290 MS.gene056091:intron 55.0%
!! CAGGGTGTTGATCCCAGTAG+AGG - chr1.4:67717050-67717069 MS.gene056091:intron 55.0%
AAGGCCCGAGTTACAGCTGC+AGG - chr1.4:67717031-67717050 MS.gene056091:intron 60.0%
AGGCCCGAGTTACAGCTGCA+GGG - chr1.4:67717032-67717051 MS.gene056091:intron 60.0%
CGCTCTCTCCACTCCTGATG+AGG + chr1.4:67719986-67720005 None:intergenic 60.0%
CGTTCGTCGTGATGGTACGG+TGG - chr1.4:67718511-67718530 MS.gene056091:intron 60.0%
GCAATGCGATGCCACTGAGC+AGG + chr1.4:67718272-67718291 None:intergenic 60.0%
GTAACTCGGGCCTTCCACCA+AGG + chr1.4:67717025-67717044 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 67716639 67720226 67716639 ID=MS.gene056091
chr1.4 mRNA 67716639 67720226 67716639 ID=MS.gene056091.t1;Parent=MS.gene056091
chr1.4 exon 67720175 67720226 67720175 ID=MS.gene056091.t1.exon1;Parent=MS.gene056091.t1
chr1.4 CDS 67720175 67720226 67720175 ID=cds.MS.gene056091.t1;Parent=MS.gene056091.t1
chr1.4 exon 67719768 67719967 67719768 ID=MS.gene056091.t1.exon2;Parent=MS.gene056091.t1
chr1.4 CDS 67719768 67719967 67719768 ID=cds.MS.gene056091.t1;Parent=MS.gene056091.t1
chr1.4 exon 67718523 67718731 67718523 ID=MS.gene056091.t1.exon3;Parent=MS.gene056091.t1
chr1.4 CDS 67718523 67718731 67718523 ID=cds.MS.gene056091.t1;Parent=MS.gene056091.t1
chr1.4 exon 67718341 67718441 67718341 ID=MS.gene056091.t1.exon4;Parent=MS.gene056091.t1
chr1.4 CDS 67718341 67718441 67718341 ID=cds.MS.gene056091.t1;Parent=MS.gene056091.t1
chr1.4 exon 67716833 67716892 67716833 ID=MS.gene056091.t1.exon5;Parent=MS.gene056091.t1
chr1.4 CDS 67716833 67716892 67716833 ID=cds.MS.gene056091.t1;Parent=MS.gene056091.t1
chr1.4 exon 67716639 67716655 67716639 ID=MS.gene056091.t1.exon6;Parent=MS.gene056091.t1
chr1.4 CDS 67716639 67716655 67716639 ID=cds.MS.gene056091.t1;Parent=MS.gene056091.t1
Gene Sequence

>MS.gene056091

ATGAATTCTGTTGCGCTAAGACTTTCCAAGCATCTTCGACGCTCTTCTCACGGTCTCTTTCTTACTCTGTTTTCTATTTCTGCATAAACTATATAATAACTTAAATACGTTACATCTTTTCATTTCTAGTTTCACTGGTGCATTTTGTCAAACACTTGTTAGGCATTATTATATTTTACTTTCGTTCATATGTGTAACGAGAAAATGTTTGCTACTCGAGTTAATTTTTGAAGTTTGTGTTTGTTTCTGAATTCATCAGCTTCTGTTCCAAGAAGCGCGGTGTTATGCTTCTCGACATTTACGTCTGAAACTGATGCTGGTCAGCCTTCACGTGATAATAATGGGCTAAACAAGGAAGAATTAGATGATGAGTTTGATGATTTCCTTGGTGGAAGGCCCGAGTTACAGCTGCAGGGTGTTGATCCCAGTAGAGGTTGGGGATTTCGTGGTGTGCACAAGGTACTGTGTGTTGTTGATTGGTTTTTATTACTGGGTTTTGTTGGCATCTCTAGCATGGAATGGAATTTTGATTTTGTAGTTGCTGAAAGAAAACTTAATTCTATAAATTTCGAATCGCTTTAGATTAACTTCTCAATAAGCACAATAAAAATATTAAATAAAAACTTGTAATAGTTGAGTTTTAAAAATAAAAGCTTATGTTTGGATAATCAGCATAATTAAGCACTTATATCATAAGTGCTCATCATGTACGTGGTTATGTGTAAGTTATTTCTATCTCAAAAGATAAAATAAAGTCAATATGTTTTCATATAAGCTATAAACTGTTTTCATAAATTATCCTAGAGAGTTTATGGAATTAAGCTGAAAACAGCTTATGAACATGTCATCAGTTGTTTCCATAAGCTCTCTCAAACAATCTCACAAGTGCTTAAGTCAGTAGATAAGCGCAAAAAAGTTGATCCAAACAGACCCAGGTTGAAATTAGCTTCTATTTCTTAGATTTTTGAAGAAACCCTCTTATTTAACTTCTAACGTTATAAAGACTAATAGGTTTATAACAACATTTTTGTAAGTGCATAACTATATACTTATTTATGTTGAAGAGCTTCCATTCCATAGACTAGAAGTTAATCGAAATTCCAGACTGGACCTTATTTTATGTTGAGATATATTGTATTTTGACGTGCTTGATTCATTGTATCATGTTTTGTCTGCTATGATTGTATAGTGGTTTTTTTCAGTGCAAGATTTTAATAGAGTTGAATCAATTCTCGTAAAAGTACTCAGTTGATGTTATATTACCAGAACCAGTACTTTTACGAGTTTGAATAAGTAGAATCAATTCTGGACTATGGTCGTGTTAAAGCTAATAAAAAAGACATTCTCACTAAATAGAGATTGAAACCTTAGAATAGAAGATAGTTTGTTGAACAATTTTGTATGTCTTCTGTTCTCCTTTGCTTCTAATGACATGTTATATTTGCTTTTTGCACCCGAAAAATAATTTGACCAACATGGTAGTGATTCAAAACAGGCAATTATTTGTGGTAAAGTTGGCCAAGCTCCTGTACAGAAGATATTAAGGAATGGGAAGAATGTGACCATCTTTACAGTTGGAACGGGGGGGATGTATGACCAGAGAATTGTAGGATCAAAGGATTTGCCTAAACCTGCTCAGTGGCATCGCATTGCGGTGCATAATGAAGTACTAGGGGCTTATGCAGTCCAACAACTTTTTAAAAAGTAAGTGTTTATACAAGGGGATATTTGACTTTGTTGTGAATAAAAAATTATTCAAGACTGACGCTTGAAACTTTAACGCAGTTCTTCAGTGTATGTTGAGGGTGAAATTGAGACTAGAGTTTATAATGATAGTATTAATGGTGAAGTCAAAAGCATTCCAGAGATATGCGTTCGTCGTGATGGTACGGTGGTTTATATGTTTATGTTTCCTTGTTCTTTATTAAGCTTTCTGAGAAAGGCCAACAAACATTAGGCTCTGTTGTGTGTATATTGAACATTTGAGAGTAGTTGTTTCATTCGTATCCGTAATGCCTTTTATTAGGTTAGAAGCATCAAGCTCCCCATTTTTTTGTCTGGGTTTTGGGAGAGTAGGAACATTGTAGTGGAGAAACATAGGGTGTAGTAGCTTGTTTCTGCATTCAGAGGGTATAAAATATGTTTAATATATATATATATATATATATATATGGGTTTTGCTAGAAGCCACCCATGAAGGTGTCTTTTAGCAACCCACACCTTAAGGTGTGATTTCCACTTTTTAGTTATAACTTTGCTAAAAGACACCTTCATAAAAATTAGTTGGTGTCTTTTAACAAATGCTCATAGAATAACTTGCTAAAAGACACCTTCATAAAAGGTGCCTTCTAGCAAAACCCTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAGGAACAGACGGTGTGCTTTTACACGGAAAAAGTGATACTACTCAACACTTAACCTGACCATGATTTGGATCAACTTTCCCATCATCAATGTTAATATGATTATCATATTAAAAGTGTGAACCGAACTGGCAGTTTGAGTAGAAATCAGCAACGATGGGGATTGGGAAACTTATCAAACTGGTACTAAAAATCTGATTTGAGCCTTTTTTAAATTATTTATTTTTTATTTAATCAAAACCCTTTTTTGGAGACATATGAAGGTATGCATTTAAGGTTCACCTGTCCGCATATAGATGGTTTACTTAGCCTTTTATTATTGAATTTTATGCTGTAGCCTGCAGGACATAAATTATGATCCTTCATTATTGATTTACTATTATTTTGTTAGATTATTATTTCATTTAGTATAATATTTATTTAATCATTATATTTTAATTATTATTTGTTTGACCACAGTTCAAATAATAGTTGAAAAATTGAATTATGAAAAGTTGAAAAATTGTTAATTATTATATACATTGCTTATTTTTATCTCTGGGTTTGTTGTGCTGTATGAGGCATCTGAGCTTATTTTACTCATTTAATTTGGGGACAAATGCGCTGTGGCATTTGTATTGCAATGGAGTTTCAGTTTTGAGAGCCCAAACATGTATTCTTTGCACAGAAAGGCTGATTTTATCTTGGTGAAGAGGGAACTGACTTAAGACGACGTTACAATTTTCATGAGTATTGGAATTAATTAAGGACTCTGAACCCACTTAAATAGATAACATATCAGTTTATCTTATATTTATGGTTTTTGTTTCTCTCGACTCATTACAAACTGATAGTTTGTTGTTGCCCATGTTGGGATCATACTGAGTTATTGTTCTCCATGTTATCTCTTCAGGGAAACTTCGCCTCATCAGGAGTGGAGAGAGCGTTGATAAAACTTCCTTGGATGAATTTAGTAAGTTCTTTTTAACTGTTGTTGCAAATAGTAACACGTTTTAGTAGTCCTTTTCAGTCACTTTAGTATGTGAGTTGTGACCGTATTTTTGGAGTTATATTGGGCACATTGTTACTATTAACATCGATGTCTGTTATTAACTAGAATTTCGACTGACTAATAAATTCATGCTGGCAGGAGAGGGTTTGTTTTAG

Protein sequence

>MS.gene056091.t1

MNSVALRLSKHLRRSSHASVPRSAVLCFSTFTSETDAGQPSRDNNGLNKEELDDEFDDFLGGRPELQLQGVDPSRGWGFRGVHKAIICGKVGQAPVQKILRNGKNVTIFTVGTGGMYDQRIVGSKDLPKPAQWHRIAVHNEVLGAYAVQQLFKNSSVYVEGEIETRVYNDSINGEVKSIPEICVRRDGKLRLIRSGESVDKTSLDEFREGLF