AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58395

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58395.t1 MTR_2g078210 94.097 288 11 2 19 300 29 316 0.0 556
MS.gene58395.t1 MTR_2g078210 96.484 256 9 0 45 300 1 256 0.0 516
MS.gene58395.t1 MTR_2g015370 47.500 280 133 6 11 280 7 282 6.45e-77 236
MS.gene58395.t1 MTR_4g050480 43.636 165 93 0 60 224 98 262 5.17e-34 129
MS.gene58395.t1 MTR_4g050480 43.636 165 93 0 60 224 99 263 5.30e-34 129
MS.gene58395.t1 MTR_1g095740 37.427 171 97 4 59 222 142 309 8.58e-30 118
MS.gene58395.t1 MTR_6g033415 36.517 178 102 4 52 222 101 274 5.51e-29 115
MS.gene58395.t1 MTR_1g066800 35.260 173 102 3 51 218 114 281 9.24e-27 109
MS.gene58395.t1 MTR_1g066800 35.260 173 102 3 51 218 109 276 1.07e-26 109
MS.gene58395.t1 MTR_7g100790 35.928 167 106 1 59 224 109 275 3.16e-25 105
MS.gene58395.t1 MTR_3g104570 36.872 179 103 5 60 229 93 270 2.85e-23 99.4
MS.gene58395.t1 MTR_4g087420 31.892 185 106 5 49 218 137 316 3.09e-20 90.9
MS.gene58395.t1 MTR_8g024540 31.183 186 102 8 58 224 127 305 6.02e-16 78.2
MS.gene58395.t1 MTR_8g017570 30.570 193 126 3 60 244 92 284 8.73e-15 74.7
MS.gene58395.t1 MTR_2g099780 32.370 173 107 3 60 222 80 252 4.42e-12 66.6
MS.gene58395.t1 MTR_1g007920 27.692 195 114 5 60 227 99 293 3.80e-11 63.9
MS.gene58395.t1 MTR_1g007920 27.692 195 114 5 60 227 124 318 5.04e-11 63.5
MS.gene58395.t1 MTR_0047s0040 28.994 169 103 4 54 216 97 254 6.62e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58395.t1 AT3G15050 59.184 196 75 2 34 227 27 219 1.49e-80 244
MS.gene58395.t1 AT2G33990 49.500 200 96 3 60 256 49 246 2.10e-64 203
MS.gene58395.t1 AT3G22190 36.000 225 141 2 57 279 87 310 1.48e-32 124
MS.gene58395.t1 AT3G22190 36.000 225 141 2 57 279 87 310 1.48e-32 124
MS.gene58395.t1 AT3G22190 36.000 225 141 2 57 279 87 310 1.48e-32 124
MS.gene58395.t1 AT3G22190 36.000 225 141 2 57 279 87 310 1.48e-32 124
MS.gene58395.t1 AT2G26180 40.805 174 95 3 60 225 86 259 3.61e-31 120
MS.gene58395.t1 AT2G26410 35.882 170 100 4 60 223 150 316 8.68e-28 112
MS.gene58395.t1 AT2G26410 35.882 170 100 4 60 223 150 316 8.68e-28 112
MS.gene58395.t1 AT3G52290 35.057 174 108 3 51 222 101 271 1.65e-27 111
MS.gene58395.t1 AT5G03040 33.010 206 122 5 33 229 89 287 5.12e-26 107
MS.gene58395.t1 AT5G03040 33.010 206 122 5 33 229 89 287 5.12e-26 107
MS.gene58395.t1 AT5G03040 33.010 206 122 5 33 229 89 287 5.12e-26 107
MS.gene58395.t1 AT1G72670 34.884 172 104 3 60 225 95 264 7.39e-26 106
MS.gene58395.t1 AT3G09710 35.119 168 100 2 60 222 110 273 2.31e-25 105
MS.gene58395.t1 AT3G09710 33.516 182 98 4 60 222 110 287 1.43e-24 103
MS.gene58395.t1 AT3G59690 33.140 172 102 7 46 214 157 318 1.10e-23 100
MS.gene58395.t1 AT3G59690 33.140 172 102 7 46 214 157 318 1.10e-23 100
MS.gene58395.t1 AT1G17480 31.429 175 98 4 41 213 85 239 4.55e-22 95.1
MS.gene58395.t1 AT2G43680 30.811 185 88 9 46 214 310 470 8.04e-18 84.0
MS.gene58395.t1 AT2G43680 30.811 185 88 9 46 214 310 470 8.04e-18 84.0
MS.gene58395.t1 AT2G43680 30.811 185 88 9 46 214 310 470 8.04e-18 84.0
MS.gene58395.t1 AT2G43680 30.811 185 88 9 46 214 310 470 8.04e-18 84.0
MS.gene58395.t1 AT2G43680 30.811 185 88 9 46 214 311 471 8.50e-18 84.0
MS.gene58395.t1 AT3G49260 25.888 197 120 4 60 236 122 312 4.36e-17 81.6
MS.gene58395.t1 AT3G49260 25.888 197 120 4 60 236 122 312 4.36e-17 81.6
MS.gene58395.t1 AT3G49260 25.888 197 120 4 60 236 122 312 4.36e-17 81.6
MS.gene58395.t1 AT3G49260 26.263 198 119 4 60 236 122 313 5.48e-17 81.3
MS.gene58395.t1 AT4G00820 27.014 211 125 6 33 225 112 311 8.16e-16 78.2
MS.gene58395.t1 AT1G01110 24.775 222 144 7 23 225 86 303 1.68e-12 68.2

Find 75 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGCATTTCGTTCATTTA+TGG 0.156996 2.3:+19581323 MS.gene58395:CDS
GCCGTTGAGTTTCTTTGTTT+TGG 0.177224 2.3:-19583160 None:intergenic
GTGGTTCATCTTATCTAATT+TGG 0.248605 2.3:-19583196 None:intergenic
GAAGAACATTTCAACATCTA+AGG 0.257374 2.3:+19582512 MS.gene58395:CDS
CCAAACTGTAACCAGTATTT+TGG 0.272065 2.3:+19583036 MS.gene58395:CDS
CAGCGCGTCCTTGGGAGGTT+CGG 0.294645 2.3:+19583121 MS.gene58395:CDS
GTTGGGTTGCAGCGCGTCCT+TGG 0.318135 2.3:+19583112 MS.gene58395:CDS
CTCCATCATCAAACCTTCAT+TGG 0.319760 2.3:-19581250 None:intergenic
CTAATTTGGTCTTCTGCTGC+TGG 0.344502 2.3:-19583182 None:intergenic
TGTTGTTCCTGTTTGGTCTC+TGG 0.347194 2.3:-19582575 None:intergenic
TGGAGAGGACAGTTCCTTCC+AGG 0.372133 2.3:+19581268 MS.gene58395:CDS
TTGGAGCTGGATGGAGCGTT+GGG 0.373478 2.3:+19583095 MS.gene58395:CDS
CCAAAATACTGGTTACAGTT+TGG 0.386021 2.3:-19583036 None:intergenic
GTTGGAGCTGGATGGAGCGT+TGG 0.388313 2.3:+19583094 MS.gene58395:CDS
CACTTAACTACATACATTCA+TGG 0.393069 2.3:+19582596 MS.gene58395:CDS
GGCATATGCTTTCTCTCATC+AGG 0.394693 2.3:+19582932 MS.gene58395:CDS
ACTAAAGCTGCCATGTCAAA+TGG 0.395308 2.3:+19583252 MS.gene58395:CDS
TTGGGTTGCAGCGCGTCCTT+GGG 0.397902 2.3:+19583113 MS.gene58395:CDS
GGTCAGGCTTCTTATAGCCT+TGG 0.403857 2.3:+19583057 MS.gene58395:CDS
TCTCATTATGAACCTTGCTT+TGG 0.408069 2.3:+19581122 None:intergenic
AAGAAGCCTGACCAAAATAC+TGG 0.421606 2.3:-19583047 None:intergenic
TCTCTTAGCACTCTTTGAAC+AGG 0.422027 2.3:+19581167 MS.gene58395:CDS
AGTTAAGTGTTGTTCCTGTT+TGG 0.425963 2.3:-19582582 None:intergenic
TTGATTCTTCATGAGGGCTA+TGG 0.431764 2.3:-19581218 None:intergenic
AGCGCGTCCTTGGGAGGTTC+GGG 0.435357 2.3:+19583122 MS.gene58395:CDS
AGGGCTATGGTTCCCATTGG+AGG 0.450209 2.3:-19581205 None:intergenic
TCCATCATCAAACCTTCATT+GGG 0.455643 2.3:-19581249 None:intergenic
GACATGGCAGCTTTAGTCAA+TGG 0.463459 2.3:-19583246 None:intergenic
AAGAAAGCTGGGGTTGGAGC+TGG 0.466713 2.3:+19583082 MS.gene58395:CDS
TTCTTCTCGCTGATGTATCC+TGG 0.469935 2.3:-19582883 None:intergenic
CAGGATTAAGCAAAAGAGAT+TGG 0.472339 2.3:+19582672 MS.gene58395:CDS
CTAAAGCTGCCATGTCAAAT+GGG 0.486923 2.3:+19583253 MS.gene58395:CDS
ATAGCCTTGGTAAAGAAAGC+TGG 0.489924 2.3:+19583070 MS.gene58395:CDS
ATGAGGGCTATGGTTCCCAT+TGG 0.494385 2.3:-19581208 None:intergenic
AAGAACATTTCAACATCTAA+GGG 0.495562 2.3:+19582513 MS.gene58395:CDS
GTGTTACTTGATTCTTCATG+AGG 0.498076 2.3:-19581225 None:intergenic
TAGCCTTGGTAAAGAAAGCT+GGG 0.502264 2.3:+19583071 MS.gene58395:CDS
TTCACAATATTGCTGCTACT+CGG 0.514388 2.3:+19581295 MS.gene58395:CDS
TTGGTAAAGAAAGCTGGGGT+TGG 0.518496 2.3:+19583076 MS.gene58395:CDS
GTGCAGCGGCTCTGAAACAA+TGG 0.520220 2.3:+19582848 MS.gene58395:CDS
GGGCTATGGTTCCCATTGGA+GGG 0.533590 2.3:-19581204 None:intergenic
TCAAGTAACACTCCCAATGA+AGG 0.535092 2.3:+19581237 MS.gene58395:CDS
TCCCAATGAAGGTTTGATGA+TGG 0.538229 2.3:+19581248 MS.gene58395:CDS
CAATCTACTGAACCCTCCAA+TGG 0.545908 2.3:+19581192 MS.gene58395:CDS
ATCGCCATTAAAATCACCAT+TGG 0.547703 2.3:+19583293 MS.gene58395:CDS
AATCTACTGAACCCTCCAAT+GGG 0.550183 2.3:+19581193 MS.gene58395:CDS
GACACGGAAGCTTTAGCCAA+TGG 0.552731 2.3:-19583309 None:intergenic
GGTTGCAGCGCGTCCTTGGG+AGG 0.553914 2.3:+19583116 MS.gene58395:CDS
CACATGGCCAGAGACCAAAC+AGG 0.554081 2.3:+19582568 MS.gene58395:CDS
AATGCGAAGGAGACTGAGAA+AGG 0.557321 2.3:+19583333 MS.gene58395:CDS
ACTCTCCTTCCCATTTGACA+TGG 0.564367 2.3:-19583262 None:intergenic
AGCTTCCGTGTCAAATGCGA+AGG 0.566653 2.3:+19583320 MS.gene58395:CDS
CAATGGAAGAGATACTATCC+AGG 0.570614 2.3:+19582865 MS.gene58395:CDS
AGTCTCCTTCGCATTTGACA+CGG 0.580502 2.3:-19583325 None:intergenic
CTGTTTGGTCTCTGGCCATG+TGG 0.581097 2.3:-19582567 None:intergenic
AGCTGCCATGTCAAATGGGA+AGG 0.581376 2.3:+19583257 MS.gene58395:CDS
TGTGTATGATAACAGCAGCC+AGG 0.581859 2.3:+19582653 MS.gene58395:CDS
AACCCCAGCTTTCTTTACCA+AGG 0.586825 2.3:-19583074 None:intergenic
ACTTGAACCCGAACCTCCCA+AGG 0.587510 2.3:-19583129 None:intergenic
AGCAATATTGTGAATCAACC+TGG 0.594625 2.3:-19581286 None:intergenic
TGAATGTATCCCAGGTGGAA+TGG 0.600817 2.3:+19582826 MS.gene58395:intron
ACACTGGATGTGCCAAAGCA+AGG 0.605480 2.3:-19581134 None:intergenic
AGCTTTAATTCAAGACCACA+TGG 0.613946 2.3:+19582552 MS.gene58395:CDS
TCCCAGGTGGAATGGTGCAG+CGG 0.614921 2.3:+19582834 MS.gene58395:intron
TGTTACTTGATTCTTCATGA+GGG 0.616361 2.3:-19581224 None:intergenic
ATGAAGGTTTGATGATGGAG+AGG 0.619518 2.3:+19581253 MS.gene58395:CDS
AAGAGAACAAGAAACAACAC+TGG 0.628724 2.3:-19581150 None:intergenic
AAGCTGGGGTTGGAGCTGGA+TGG 0.631067 2.3:+19583086 MS.gene58395:CDS
CCCAAAACAAAGAAACTCAA+CGG 0.631804 2.3:+19583159 MS.gene58395:CDS
ATGAGAGAAAGCATATGCCA+TGG 0.645984 2.3:-19582928 None:intergenic
GGCTAAGATTAATGAGCTCG+AGG 0.646302 2.3:+19582714 MS.gene58395:CDS
AATCAAACGAGAGCGAGCCA+TGG 0.651456 2.3:+19582911 MS.gene58395:CDS
ATATTGTGAATCAACCTGGA+AGG 0.653405 2.3:-19581282 None:intergenic
AGAACATTTCAACATCTAAG+GGG 0.685065 2.3:+19582514 MS.gene58395:CDS
AGCCTTGGTAAAGAAAGCTG+GGG 0.695007 2.3:+19583072 MS.gene58395:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTAAATCAAATTTAAA+TGG + chr2.3:19582028-19582047 MS.gene58395:intron 10.0%
!! AAAATTATCTGACATATTAT+GGG - chr2.3:19582369-19582388 None:intergenic 15.0%
!! TAAAATTATCTGACATATTA+TGG - chr2.3:19582370-19582389 None:intergenic 15.0%
!! AAAATTCTATTTCCTTTAAG+TGG + chr2.3:19581755-19581774 MS.gene58395:intron 20.0%
!! AATAGAGATAACACTTTAAA+AGG - chr2.3:19582772-19582791 None:intergenic 20.0%
!! ATAAAGTTCTATACTATCAA+AGG + chr2.3:19581893-19581912 MS.gene58395:intron 20.0%
!! TGTGAAAATTGTAGTAAAAA+TGG - chr2.3:19581383-19581402 None:intergenic 20.0%
!!! CACTTTTTTTTTATTACTAC+TGG + chr2.3:19582135-19582154 MS.gene58395:intron 20.0%
!!! TCAAATTTTGTTTTCAAGAA+AGG - chr2.3:19582984-19583003 None:intergenic 20.0%
! AAATGCATTTCGTTCATTTA+TGG + chr2.3:19581323-19581342 MS.gene58395:CDS 25.0%
! AAATTTGACTACTAATGTCA+AGG + chr2.3:19582996-19583015 MS.gene58395:intron 25.0%
! AACTTAAAGCAATTATGTTC+AGG + chr2.3:19582167-19582186 MS.gene58395:intron 25.0%
! AAGAACATTTCAACATCTAA+GGG + chr2.3:19582513-19582532 MS.gene58395:CDS 25.0%
! TTTCCAACAGTTATAAAAGA+GGG - chr2.3:19582264-19582283 None:intergenic 25.0%
!! AAATCGACATTTCTAAAGAT+AGG - chr2.3:19582401-19582420 None:intergenic 25.0%
!! AATCGACATTTCTAAAGATA+GGG - chr2.3:19582400-19582419 None:intergenic 25.0%
!! AGATGAGCTTTTTAATCTTA+CGG - chr2.3:19581514-19581533 None:intergenic 25.0%
!! GAATATTTTGTATTTCCTCA+AGG + chr2.3:19582064-19582083 MS.gene58395:intron 25.0%
!! GCAAACTTAGTATTTTCATA+AGG - chr2.3:19581707-19581726 None:intergenic 25.0%
!! TTAGTCAATGGTGATTTTAA+TGG - chr2.3:19583237-19583256 None:intergenic 25.0%
!! TTTTCATAAGGATTAAGCAT+AGG - chr2.3:19581695-19581714 None:intergenic 25.0%
!!! TTGATAATGACTTTAGAACA+TGG + chr2.3:19582098-19582117 MS.gene58395:intron 25.0%
AAAAAAAGTGAAGACAGTAG+TGG - chr2.3:19582125-19582144 None:intergenic 30.0%
AAAAATCGCGAAATGCATAA+GGG - chr2.3:19581452-19581471 None:intergenic 30.0%
AACTAGACTATCACTAAAGA+AGG - chr2.3:19582012-19582031 None:intergenic 30.0%
ACGTATAGAAAAAACAGATG+AGG - chr2.3:19582298-19582317 None:intergenic 30.0%
AGAACATTTCAACATCTAAG+GGG + chr2.3:19582514-19582533 MS.gene58395:CDS 30.0%
CACTTAACTACATACATTCA+TGG + chr2.3:19582596-19582615 MS.gene58395:CDS 30.0%
CATGATTCCTTAACTTCATA+GGG + chr2.3:19581627-19581646 MS.gene58395:intron 30.0%
CGTATAGAAAAAACAGATGA+GGG - chr2.3:19582297-19582316 None:intergenic 30.0%
CTTTCCAACAGTTATAAAAG+AGG - chr2.3:19582265-19582284 None:intergenic 30.0%
GAAGAACATTTCAACATCTA+AGG + chr2.3:19582512-19582531 MS.gene58395:CDS 30.0%
GGAAAGTCAGTTAAAAATTG+AGG + chr2.3:19582693-19582712 MS.gene58395:CDS 30.0%
GTGGTTCATCTTATCTAATT+TGG - chr2.3:19583199-19583218 None:intergenic 30.0%
TAAAAATCGCGAAATGCATA+AGG - chr2.3:19581453-19581472 None:intergenic 30.0%
TAGTTCAGAAAACCAAAGTT+AGG - chr2.3:19581537-19581556 None:intergenic 30.0%
TCAAAGTAAATGATACCTTG+AGG - chr2.3:19582082-19582101 None:intergenic 30.0%
TCAAGAAAGGATAAATCAAG+TGG - chr2.3:19582971-19582990 None:intergenic 30.0%
TTTGTGTAAACTTGATCCAA+CGG + chr2.3:19581578-19581597 MS.gene58395:intron 30.0%
! ATCGACATTTCTAAAGATAG+GGG - chr2.3:19582399-19582418 None:intergenic 30.0%
! ATTTTTGCTTTAGTAGACGA+AGG - chr2.3:19581740-19581759 None:intergenic 30.0%
! TGTTACTTGATTCTTCATGA+GGG - chr2.3:19581227-19581246 None:intergenic 30.0%
! TTAGCCAATGGTGATTTTAA+TGG - chr2.3:19583300-19583319 None:intergenic 30.0%
! TTATGCATTTCGCGATTTTT+AGG + chr2.3:19581452-19581471 MS.gene58395:intron 30.0%
!! AACTTAACTTGTTGTCAAGA+AGG - chr2.3:19582322-19582341 None:intergenic 30.0%
!! ATGGAGATTTTGTTTCATTG+TGG - chr2.3:19583218-19583237 None:intergenic 30.0%
AAAAGCTCATCTCCTAACTT+TGG + chr2.3:19581522-19581541 MS.gene58395:intron 35.0%
AAAATCGCGAAATGCATAAG+GGG - chr2.3:19581451-19581470 None:intergenic 35.0%
AAAGGCTAACTATCACAGAT+AGG - chr2.3:19582754-19582773 None:intergenic 35.0%
AAGAGAACAAGAAACAACAC+TGG - chr2.3:19581153-19581172 None:intergenic 35.0%
AGCAATATTGTGAATCAACC+TGG - chr2.3:19581289-19581308 None:intergenic 35.0%
ATATTGTGAATCAACCTGGA+AGG - chr2.3:19581285-19581304 None:intergenic 35.0%
ATCGCCATTAAAATCACCAT+TGG + chr2.3:19583293-19583312 MS.gene58395:CDS 35.0%
ATGTCAAGGTAATATTGCAG+TGG + chr2.3:19583010-19583029 MS.gene58395:intron 35.0%
CAACTTAACAAAGTGACATG+AGG + chr2.3:19581845-19581864 MS.gene58395:intron 35.0%
CAGGATTAAGCAAAAGAGAT+TGG + chr2.3:19582672-19582691 MS.gene58395:CDS 35.0%
CCATGATTCCTTAACTTCAT+AGG + chr2.3:19581626-19581645 MS.gene58395:intron 35.0%
CCCAAAACAAAGAAACTCAA+CGG + chr2.3:19583159-19583178 MS.gene58395:CDS 35.0%
CCTATGAAGTTAAGGAATCA+TGG - chr2.3:19581629-19581648 None:intergenic 35.0%
CTAGATTCCCTATGAAGTTA+AGG - chr2.3:19581637-19581656 None:intergenic 35.0%
CTTAACTTCATAGGGAATCT+AGG + chr2.3:19581635-19581654 MS.gene58395:intron 35.0%
TCCATCATCAAACCTTCATT+GGG - chr2.3:19581252-19581271 None:intergenic 35.0%
TGATTGCAAGGAAAGTTAGA+AGG - chr2.3:19581783-19581802 None:intergenic 35.0%
TTCACAATATTGCTGCTACT+CGG + chr2.3:19581295-19581314 MS.gene58395:CDS 35.0%
TTTCCTTGCAATCATAGACA+TGG + chr2.3:19581789-19581808 MS.gene58395:intron 35.0%
TTTGATGCAATCATACGATC+TGG - chr2.3:19581605-19581624 None:intergenic 35.0%
! AGCTTTAATTCAAGACCACA+TGG + chr2.3:19582552-19582571 MS.gene58395:CDS 35.0%
! AGTTAAGTGTTGTTCCTGTT+TGG - chr2.3:19582585-19582604 None:intergenic 35.0%
! CAATCTCTTTTGCTTAATCC+TGG - chr2.3:19582674-19582693 None:intergenic 35.0%
! CCAAAATACTGGTTACAGTT+TGG - chr2.3:19583039-19583058 None:intergenic 35.0%
! CCAAACTGTAACCAGTATTT+TGG + chr2.3:19583036-19583055 MS.gene58395:CDS 35.0%
! TCACCCTCTTTTATAACTGT+TGG + chr2.3:19582258-19582277 MS.gene58395:intron 35.0%
!! AGTTAGAAGGTACCACTTAA+AGG - chr2.3:19581770-19581789 None:intergenic 35.0%
!! GTGTTACTTGATTCTTCATG+AGG - chr2.3:19581228-19581247 None:intergenic 35.0%
!!! CCGTTGAGTTTCTTTGTTTT+GGG - chr2.3:19583162-19583181 None:intergenic 35.0%
!!! CGTTGAGTTTCTTTGTTTTG+GGG - chr2.3:19583161-19583180 None:intergenic 35.0%
!!! GTTGAGTTTCTTTGTTTTGG+GGG - chr2.3:19583160-19583179 None:intergenic 35.0%
AAGAAGCCTGACCAAAATAC+TGG - chr2.3:19583050-19583069 None:intergenic 40.0%
AATCTACTGAACCCTCCAAT+GGG + chr2.3:19581193-19581212 MS.gene58395:CDS 40.0%
ACTAAAGCTGCCATGTCAAA+TGG + chr2.3:19583252-19583271 MS.gene58395:CDS 40.0%
CAATGGAAGAGATACTATCC+AGG + chr2.3:19582865-19582884 MS.gene58395:CDS 40.0%
CTAAAGCTGCCATGTCAAAT+GGG + chr2.3:19583253-19583272 MS.gene58395:CDS 40.0%
CTCCATCATCAAACCTTCAT+TGG - chr2.3:19581253-19581272 None:intergenic 40.0%
TAAGATTAATGAGCTCGAGG+TGG + chr2.3:19582717-19582736 MS.gene58395:intron 40.0%
TCAAGGTAATATTGCAGTGG+AGG + chr2.3:19583013-19583032 MS.gene58395:intron 40.0%
TCAAGTAACACTCCCAATGA+AGG + chr2.3:19581237-19581256 MS.gene58395:CDS 40.0%
TCCCAATGAAGGTTTGATGA+TGG + chr2.3:19581248-19581267 MS.gene58395:CDS 40.0%
TCTCTTAGCACTCTTTGAAC+AGG + chr2.3:19581167-19581186 MS.gene58395:CDS 40.0%
TGGAAGGGGAATTAAGTCTT+GGG + chr2.3:19582206-19582225 MS.gene58395:intron 40.0%
TTCTTCTTGCCTGCATACAT+AGG - chr2.3:19582498-19582517 None:intergenic 40.0%
TTGATTCTTCATGAGGGCTA+TGG - chr2.3:19581221-19581240 None:intergenic 40.0%
TTGCCTGCATACATAGGTAT+GGG - chr2.3:19582492-19582511 None:intergenic 40.0%
TTGGAAGGGGAATTAAGTCT+TGG + chr2.3:19582205-19582224 MS.gene58395:intron 40.0%
! ACGTTTTGTGAATGTATCCC+AGG + chr2.3:19582818-19582837 MS.gene58395:intron 40.0%
! ATAGCCTTGGTAAAGAAAGC+TGG + chr2.3:19583070-19583089 MS.gene58395:CDS 40.0%
! ATGAGAGAAAGCATATGCCA+TGG - chr2.3:19582931-19582950 None:intergenic 40.0%
! TAGCCTTGGTAAAGAAAGCT+GGG + chr2.3:19583071-19583090 MS.gene58395:CDS 40.0%
! TCATTGACTGCATGATTGCA+TGG - chr2.3:19581485-19581504 None:intergenic 40.0%
! TTTTGTGAATGTATCCCAGG+TGG + chr2.3:19582821-19582840 MS.gene58395:intron 40.0%
!! ACAGCTCTCTGATTTTGGAA+GGG + chr2.3:19582191-19582210 MS.gene58395:intron 40.0%
!! ATGAAGGTTTGATGATGGAG+AGG + chr2.3:19581253-19581272 MS.gene58395:CDS 40.0%
!! GCCGTTGAGTTTCTTTGTTT+TGG - chr2.3:19583163-19583182 None:intergenic 40.0%
!!! CTGTAACCAGTATTTTGGTC+AGG + chr2.3:19583041-19583060 MS.gene58395:CDS 40.0%
AACCCCAGCTTTCTTTACCA+AGG - chr2.3:19583077-19583096 None:intergenic 45.0%
AATCATACGATCTGGACCGT+TGG - chr2.3:19581597-19581616 None:intergenic 45.0%
AATGCGAAGGAGACTGAGAA+AGG + chr2.3:19583333-19583352 MS.gene58395:CDS 45.0%
ACTCTCCTTCCCATTTGACA+TGG - chr2.3:19583265-19583284 None:intergenic 45.0%
AGCCTTGGTAAAGAAAGCTG+GGG + chr2.3:19583072-19583091 MS.gene58395:CDS 45.0%
AGTCTCCTTCGCATTTGACA+CGG - chr2.3:19583328-19583347 None:intergenic 45.0%
CAATCTACTGAACCCTCCAA+TGG + chr2.3:19581192-19581211 MS.gene58395:CDS 45.0%
CAGCCATGTCTATGATTGCA+AGG - chr2.3:19581795-19581814 None:intergenic 45.0%
CTTGCCTGCATACATAGGTA+TGG - chr2.3:19582493-19582512 None:intergenic 45.0%
GGCATATGCTTTCTCTCATC+AGG + chr2.3:19582932-19582951 MS.gene58395:CDS 45.0%
GGCTAAGATTAATGAGCTCG+AGG + chr2.3:19582714-19582733 MS.gene58395:CDS 45.0%
TGAATGTATCCCAGGTGGAA+TGG + chr2.3:19582826-19582845 MS.gene58395:intron 45.0%
TGCCTGCATACATAGGTATG+GGG - chr2.3:19582491-19582510 None:intergenic 45.0%
TGTGTATGATAACAGCAGCC+AGG + chr2.3:19582653-19582672 MS.gene58395:CDS 45.0%
TGTTGTTCCTGTTTGGTCTC+TGG - chr2.3:19582578-19582597 None:intergenic 45.0%
TTCTTCTCGCTGATGTATCC+TGG - chr2.3:19582886-19582905 None:intergenic 45.0%
TTGGTAAAGAAAGCTGGGGT+TGG + chr2.3:19583076-19583095 MS.gene58395:CDS 45.0%
! CACAGCTCTCTGATTTTGGA+AGG + chr2.3:19582190-19582209 MS.gene58395:intron 45.0%
! CTAATTTGGTCTTCTGCTGC+TGG - chr2.3:19583185-19583204 None:intergenic 45.0%
! GACATGGCAGCTTTAGTCAA+TGG - chr2.3:19583249-19583268 None:intergenic 45.0%
!! CAGCTCTCTGATTTTGGAAG+GGG + chr2.3:19582192-19582211 MS.gene58395:intron 45.0%
!! TAATATACAAAAATAAAAAA+TGG + chr2.3:19581555-19581574 MS.gene58395:intron 5.0%
AATCAAACGAGAGCGAGCCA+TGG + chr2.3:19582911-19582930 MS.gene58395:CDS 50.0%
ACACTGGATGTGCCAAAGCA+AGG - chr2.3:19581137-19581156 None:intergenic 50.0%
AGCTGCCATGTCAAATGGGA+AGG + chr2.3:19583257-19583276 MS.gene58395:CDS 50.0%
AGCTTCCGTGTCAAATGCGA+AGG + chr2.3:19583320-19583339 MS.gene58395:CDS 50.0%
ATGAGGGCTATGGTTCCCAT+TGG - chr2.3:19581211-19581230 None:intergenic 50.0%
GCCTGCATACATAGGTATGG+GGG - chr2.3:19582490-19582509 None:intergenic 50.0%
GGTCAGGCTTCTTATAGCCT+TGG + chr2.3:19583057-19583076 MS.gene58395:CDS 50.0%
! CAGGCACAGCTCTCTGATTT+TGG + chr2.3:19582186-19582205 MS.gene58395:intron 50.0%
! GACACGGAAGCTTTAGCCAA+TGG - chr2.3:19583312-19583331 None:intergenic 50.0%
AAGAAAGCTGGGGTTGGAGC+TGG + chr2.3:19583082-19583101 MS.gene58395:CDS 55.0%
ACTTGAACCCGAACCTCCCA+AGG - chr2.3:19583132-19583151 None:intergenic 55.0%
AGGGCTATGGTTCCCATTGG+AGG - chr2.3:19581208-19581227 None:intergenic 55.0%
CACATGGCCAGAGACCAAAC+AGG + chr2.3:19582568-19582587 MS.gene58395:CDS 55.0%
CTGTTTGGTCTCTGGCCATG+TGG - chr2.3:19582570-19582589 None:intergenic 55.0%
GCCCCCATACCTATGTATGC+AGG + chr2.3:19582486-19582505 MS.gene58395:intron 55.0%
GGGCTATGGTTCCCATTGGA+GGG - chr2.3:19581207-19581226 None:intergenic 55.0%
TGGAGAGGACAGTTCCTTCC+AGG + chr2.3:19581268-19581287 MS.gene58395:CDS 55.0%
! TTGGAGCTGGATGGAGCGTT+GGG + chr2.3:19583095-19583114 MS.gene58395:CDS 55.0%
!! GTGCAGCGGCTCTGAAACAA+TGG + chr2.3:19582848-19582867 MS.gene58395:CDS 55.0%
AAGCTGGGGTTGGAGCTGGA+TGG + chr2.3:19583086-19583105 MS.gene58395:CDS 60.0%
GTTGGAGCTGGATGGAGCGT+TGG + chr2.3:19583094-19583113 MS.gene58395:CDS 60.0%
TCCCAGGTGGAATGGTGCAG+CGG + chr2.3:19582834-19582853 MS.gene58395:intron 60.0%
! TTGGGTTGCAGCGCGTCCTT+GGG + chr2.3:19583113-19583132 MS.gene58395:CDS 60.0%
AGCCGCTGCACCATTCCACC+TGG - chr2.3:19582839-19582858 None:intergenic 65.0%
AGCGCGTCCTTGGGAGGTTC+GGG + chr2.3:19583122-19583141 MS.gene58395:CDS 65.0%
CAGCGCGTCCTTGGGAGGTT+CGG + chr2.3:19583121-19583140 MS.gene58395:CDS 65.0%
GCCGCTGCACCATTCCACCT+GGG - chr2.3:19582838-19582857 None:intergenic 65.0%
! GTTGGGTTGCAGCGCGTCCT+TGG + chr2.3:19583112-19583131 MS.gene58395:CDS 65.0%
GGTTGCAGCGCGTCCTTGGG+AGG + chr2.3:19583116-19583135 MS.gene58395:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 19581129 19583374 19581129 ID=MS.gene58395
chr2.3 mRNA 19581129 19583374 19581129 ID=MS.gene58395.t1;Parent=MS.gene58395
chr2.3 exon 19581129 19581344 19581129 ID=MS.gene58395.t1.exon1;Parent=MS.gene58395.t1
chr2.3 CDS 19581129 19581344 19581129 ID=cds.MS.gene58395.t1;Parent=MS.gene58395.t1
chr2.3 exon 19582508 19582735 19582508 ID=MS.gene58395.t1.exon2;Parent=MS.gene58395.t1
chr2.3 CDS 19582508 19582735 19582508 ID=cds.MS.gene58395.t1;Parent=MS.gene58395.t1
chr2.3 exon 19582840 19582953 19582840 ID=MS.gene58395.t1.exon3;Parent=MS.gene58395.t1
chr2.3 CDS 19582840 19582953 19582840 ID=cds.MS.gene58395.t1;Parent=MS.gene58395.t1
chr2.3 exon 19583030 19583374 19583030 ID=MS.gene58395.t1.exon4;Parent=MS.gene58395.t1
chr2.3 CDS 19583030 19583374 19583030 ID=cds.MS.gene58395.t1;Parent=MS.gene58395.t1
Gene Sequence

>MS.gene58395

ATGAACCTTGCTTTGGCACATCCAGTGTTGTTTCTTGTTCTCTTAGCACTCTTTGAACAGGTGCAATCTACTGAACCCTCCAATGGGAACCATAGCCCTCATGAAGAATCAAGTAACACTCCCAATGAAGGTTTGATGATGGAGAGGACAGTTCCTTCCAGGTTGATTCACAATATTGCTGCTACTCGGATTCAAAATGCATTTCGTTCATTTATGGTACAATATCTTTGTGATGCTAGACTCTTTTTATTCCATTTTTACTACAATTTTCACAGTATTTGTGCTTGTAGCTTAGAACAAAATGTCAAAATTCATTATGCCCCTTATGCATTTCGCGATTTTTAGGTTTTTAACCATGCAATCATGCAGTCAATGATCTGAACCGTAAGATTAAAAAGCTCATCTCCTAACTTTGGTTTTCTGAACTAATATACAAAAATAAAAAATGGTTTGTGTAAACTTGATCCAACGGTCCAGATCGTATGATTGCATCAAATCCATGATTCCTTAACTTCATAGGGAATCTAGGTCATGCACTTAGACTTTTGATTCTTATAATCAAACCTATGCTTAATCCTTATGAAAATACTAAGTTTGCTTTACACTCACCTTCGTCTACTAAAGCAAAAATTCTATTTCCTTTAAGTGGTACCTTCTAACTTTCCTTGCAATCATAGACATGGCTGCAACTGTCAACAATTCATTATTCTTTTTGTCAACTTAACAAAGTGACATGAGGTTATATTTTGATTCGTTAAAAGAAAATAAAGTTCTATACTATCAAAGGAAACATTATATTTTTATTTTTTTTACAATGAATGAAATACTTTGATATGATGTCTTTATTTGCAAAATCTAAAAATATAATGACTATCGACATCCTTCTTTAGTGATAGTCTAGTTTTAAATCAAATTTAAATGGAATAAATGACACTGAATATTTTGTATTTCCTCAAGGTATCATTTACTTTGATAATGACTTTAGAACATGGACCACTACTGTCTTCACTTTTTTTTTATTACTACTGGAAAGAATTAAACTTAAAGCAATTATGTTCAGGCACAGCTCTCTGATTTTGGAAGGGGAATTAAGTCTTGGGTTATGATGATATTCTCTGTTATGCAGTTATCACCCTCTTTTATAACTGTTGGAAAGCAATTATTTCCCTCATCTGTTTTTTCTATACGTACCTTCTTGACAACAAGTTAAGTTAATTAATTTTTTAGTTTTAAATATCCCATAATATGTCAGATAATTTTATACATGCCCCTATCTTTAGAAATGTCGATTTGAAGCTTTTCTACAAAATTTAGCAATTTTCACATAAGCTTAATGACATGATGAAACTTACTACTAGCCCCCATACCTATGTATGCAGGCAAGAAGAACATTTCAACATCTAAGGGGAGCAGAGAACTTTGAAGCTTTAATTCAAGACCACATGGCCAGAGACCAAACAGGAACAACACTTAACTACATACATTCATGGAGCAGAATACAAGATCAAATTAGAGCTCGTAGAATGTGTATGATAACAGCAGCCAGGATTAAGCAAAAGAGATTGGAAAGTCAGTTAAAAATTGAGGCTAAGATTAATGAGCTCGAGGTGGTGTTAACATAACCTATCTGTGATAGTTAGCCTTTTAAAGTGTTATCTCTATTATATTTGTCGCTTTCAATAAAGCATGACGTTTTGTGAATGTATCCCAGGTGGAATGGTGCAGCGGCTCTGAAACAATGGAAGAGATACTATCCAGGATACATCAGCGAGAAGAAGCAGCAATCAAACGAGAGCGAGCCATGGCATATGCTTTCTCTCATCAGGTGCATAACTTGTTCCACTTGATTTATCCTTTCTTGAAAACAAAATTTGACTACTAATGTCAAGGTAATATTGCAGTGGAGGCCAAACTGTAACCAGTATTTTGGTCAGGCTTCTTATAGCCTTGGTAAAGAAAGCTGGGGTTGGAGCTGGATGGAGCGTTGGGTTGCAGCGCGTCCTTGGGAGGTTCGGGTTCAAGTTCAGTCCCCCAAAACAAAGAAACTCAACGGCCAGCAGCAGAAGACCAAATTAGATAAGATGAACCACAATGAAACAAAATCTCCATTAAAATCACCATTGACTAAAGCTGCCATGTCAAATGGGAAGGAGAGTGAAACAAAATCGCCATTAAAATCACCATTGGCTAAAGCTTCCGTGTCAAATGCGAAGGAGACTGAGAAAGGAAAGAAAAACAAAACATGA
Protein sequence

>MS.gene58395.t1

MNLALAHPVLFLVLLALFEQVQSTEPSNGNHSPHEESSNTPNEGLMMERTVPSRLIHNIAATRIQNAFRSFMARRTFQHLRGAENFEALIQDHMARDQTGTTLNYIHSWSRIQDQIRARRMCMITAARIKQKRLESQLKIEAKINELEVEWCSGSETMEEILSRIHQREEAAIKRERAMAYAFSHQWRPNCNQYFGQASYSLGKESWGWSWMERWVAARPWEVRVQVQSPKTKKLNGQQQKTKLDKMNHNETKSPLKSPLTKAAMSNGKESETKSPLKSPLAKASVSNAKETEKGKKNKT