Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58551.t1 | XP_003613486.1 | 85.9 | 192 | 27 | 0 | 1 | 192 | 1 | 192 | 1.30E-72 | 282.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58551.t1 | F4I3V6 | 63.3 | 90 | 33 | 0 | 92 | 181 | 97 | 186 | 3.5e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58551.t1 | G7K712 | 85.9 | 192 | 27 | 0 | 1 | 192 | 1 | 192 | 9.0e-73 | 282.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052188 | MS.gene58551 | 0.807804 | 4.23E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene58551 | 0.803992 | 2.68E-49 | -1.69E-46 |
| MS.gene052508 | MS.gene58551 | 0.803729 | 3.03E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene58551 | 0.822924 | 1.83E-53 | -1.69E-46 |
| MS.gene053384 | MS.gene58551 | 0.800406 | 1.46E-48 | -1.69E-46 |
| MS.gene05592 | MS.gene58551 | 0.813172 | 2.93E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene58551 | 0.812956 | 3.27E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene58551 | 0.805507 | 1.29E-49 | -1.69E-46 |
| MS.gene056719 | MS.gene58551 | 0.826722 | 2.32E-54 | -1.69E-46 |
| MS.gene057927 | MS.gene58551 | 0.801939 | 7.10E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene58551 | 0.837928 | 3.89E-57 | -1.69E-46 |
| MS.gene05959 | MS.gene58551 | 0.808026 | 3.79E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene58551 | 0.841253 | 5.32E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene58551 | 0.804109 | 2.53E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene58551 | 0.80001 | 1.76E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58551.t1 | MTR_5g037230 | 96.354 | 192 | 7 | 0 | 1 | 192 | 1 | 192 | 4.46e-136 | 378 |
| MS.gene58551.t1 | MTR_3g040420 | 87.879 | 99 | 12 | 0 | 1 | 99 | 1 | 99 | 3.17e-58 | 178 |
| MS.gene58551.t1 | MTR_0065s0080 | 89.899 | 99 | 10 | 0 | 1 | 99 | 1 | 99 | 1.41e-49 | 156 |
| MS.gene58551.t1 | MTR_1g116050 | 84.694 | 98 | 15 | 0 | 2 | 99 | 3 | 100 | 2.35e-47 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58551.t1 | AT1G69935 | 70.000 | 90 | 27 | 0 | 92 | 181 | 97 | 186 | 2.90e-40 | 135 |
| MS.gene58551.t1 | AT4G33780 | 51.685 | 89 | 43 | 0 | 91 | 179 | 95 | 183 | 1.82e-26 | 100 |
| MS.gene58551.t1 | AT1G69935 | 71.930 | 57 | 16 | 0 | 92 | 148 | 97 | 153 | 1.08e-21 | 87.0 |
Find 33 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTATTTGCTGCAATTT+TGG | 0.129989 | 5.3:+25521592 | MS.gene58551:CDS |
| TGTTTAAGAAAATGTCTAAA+AGG | 0.262129 | 5.3:+25518846 | MS.gene58551:CDS |
| AATGTCTAAAAGGGCTAAAA+AGG | 0.323229 | 5.3:+25518856 | MS.gene58551:CDS |
| GTAGTAGAGTTTGGAAGAAA+AGG | 0.351001 | 5.3:-25518524 | None:intergenic |
| ACGATGGTTGTAGTAGAGTT+TGG | 0.361096 | 5.3:-25518533 | None:intergenic |
| TTGCAGGTCATCTGCAACAT+TGG | 0.387086 | 5.3:+25521566 | MS.gene58551:intron |
| TAGTAGAGTTTGGAAGAAAA+GGG | 0.416897 | 5.3:-25518523 | None:intergenic |
| TTCTGAGAAGTGGTGAAGAT+TGG | 0.421457 | 5.3:-25518473 | None:intergenic |
| AATCAAGGGAACAATTCCTT+TGG | 0.435782 | 5.3:+25521671 | MS.gene58551:CDS |
| ACACCTTCATCAATCTCATA+TGG | 0.466013 | 5.3:-25518734 | None:intergenic |
| TTGATTGAAACTATTCCCAT+TGG | 0.473388 | 5.3:-25521654 | None:intergenic |
| TTTGGCCCTGCGTGTGATAT+GGG | 0.475980 | 5.3:+25521610 | MS.gene58551:CDS |
| GTTTCTCACTTCCAGTCCAA+TGG | 0.484407 | 5.3:+25521638 | MS.gene58551:CDS |
| TTTCTCACTTCCAGTCCAAT+GGG | 0.491752 | 5.3:+25521639 | MS.gene58551:CDS |
| AATGGGAATAGTTTCAATCA+AGG | 0.493079 | 5.3:+25521656 | MS.gene58551:CDS |
| GTTTAAGAAAATGTCTAAAA+GGG | 0.503270 | 5.3:+25518847 | MS.gene58551:CDS |
| TGAAACTATTCCCATTGGAC+TGG | 0.507228 | 5.3:-25521649 | None:intergenic |
| AAGGAGAAACTTACGAGTTG+AGG | 0.534806 | 5.3:-25518911 | None:intergenic |
| AGAGTTTGGAAGAAAAGGGT+TGG | 0.542234 | 5.3:-25518519 | None:intergenic |
| AAGTGGTGAAGATTGGAGCA+TGG | 0.552992 | 5.3:-25518466 | None:intergenic |
| CAGGTCATCTGCAACATTGG+AGG | 0.554407 | 5.3:+25521569 | MS.gene58551:intron |
| ATGGGAATAGTTTCAATCAA+GGG | 0.569470 | 5.3:+25521657 | MS.gene58551:CDS |
| AATCATCAATTGCAATAGCA+AGG | 0.575080 | 5.3:+25518567 | MS.gene58551:CDS |
| TGTCTAGGCTATAGCACCAA+AGG | 0.578357 | 5.3:-25521687 | None:intergenic |
| TGTTGTCAAAGCACTTCTTG+AGG | 0.596810 | 5.3:+25520550 | MS.gene58551:CDS |
| AGCTGCCCATATCACACGCA+GGG | 0.602607 | 5.3:-25521615 | None:intergenic |
| GAACCATATGAGATTGATGA+AGG | 0.606231 | 5.3:+25518731 | MS.gene58551:CDS |
| TAGCTGAATAACTCAAGTGG+TGG | 0.614691 | 5.3:+25518707 | MS.gene58551:intron |
| TTGTAGCTGAATAACTCAAG+TGG | 0.616039 | 5.3:+25518704 | MS.gene58551:intron |
| AGTTGAGGAGATATCACTGT+AGG | 0.617126 | 5.3:-25518896 | None:intergenic |
| GTGAAGATTGGAGCATGGAG+AGG | 0.628672 | 5.3:-25518461 | None:intergenic |
| CAGCTGCCCATATCACACGC+AGG | 0.644863 | 5.3:-25521616 | None:intergenic |
| GGGATATGATGGGATTGAAG+AGG | 0.656878 | 5.3:+25518763 | MS.gene58551:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAAAAAAGAAAATAG+CGG | - | chr5.3:25520638-25520657 | None:intergenic | 10.0% |
| !!! | AAAAAATTGTTTTTAGAAAA+TGG | + | chr5.3:25518637-25518656 | MS.gene58551:intron | 10.0% |
| !!! | AAAAATTGTTTTTAGAAAAT+GGG | + | chr5.3:25518638-25518657 | MS.gene58551:intron | 10.0% |
| !!! | TTAGATTATTCTTATATTTT+TGG | + | chr5.3:25521401-25521420 | MS.gene58551:intron | 10.0% |
| !!! | ATGATAGTAATTTAAAATGA+AGG | - | chr5.3:25519833-25519852 | None:intergenic | 15.0% |
| !!! | ATGTTTCAAATTTTAAGATT+GGG | + | chr5.3:25520200-25520219 | MS.gene58551:intron | 15.0% |
| !!! | ATTTTTTATTACAGGTAATA+TGG | - | chr5.3:25519621-25519640 | None:intergenic | 15.0% |
| !!! | TTAAAATTTGAAACATGAAA+AGG | - | chr5.3:25520196-25520215 | None:intergenic | 15.0% |
| !! | AATCTAAACATACATTAACA+TGG | - | chr5.3:25519208-25519227 | None:intergenic | 20.0% |
| !! | GCATTTACTATAGTAAATAT+AGG | + | chr5.3:25519274-25519293 | MS.gene58551:intron | 20.0% |
| !! | GTTTAAGAAAATGTCTAAAA+GGG | + | chr5.3:25518847-25518866 | MS.gene58551:CDS | 20.0% |
| !! | TACTATAGTAAATATAGGTT+AGG | + | chr5.3:25519279-25519298 | MS.gene58551:intron | 20.0% |
| !! | TATTTCATTTAAATGCTCTT+GGG | + | chr5.3:25519559-25519578 | MS.gene58551:intron | 20.0% |
| !! | TGTTTAAGAAAATGTCTAAA+AGG | + | chr5.3:25518846-25518865 | MS.gene58551:CDS | 20.0% |
| !! | TTAATGTATGTTTAGATTTG+TGG | + | chr5.3:25519210-25519229 | MS.gene58551:intron | 20.0% |
| !! | TTAATTCTCTTTCTAGATAA+TGG | + | chr5.3:25521251-25521270 | MS.gene58551:intron | 20.0% |
| !! | TTATTTCATTTAAATGCTCT+TGG | + | chr5.3:25519558-25519577 | MS.gene58551:intron | 20.0% |
| !! | TTTAAAAGTGATAAGCAATT+GGG | - | chr5.3:25519143-25519162 | None:intergenic | 20.0% |
| !!! | ACTCTTACACTTTTTATTAT+TGG | - | chr5.3:25519978-25519997 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTGTTCAGTACA+AGG | - | chr5.3:25520032-25520051 | None:intergenic | 20.0% |
| !!! | CATGTTTCAAATTTTAAGAT+TGG | + | chr5.3:25520199-25520218 | MS.gene58551:intron | 20.0% |
| !!! | TGTTTCAAATTTTAAGATTG+GGG | + | chr5.3:25520201-25520220 | MS.gene58551:intron | 20.0% |
| !!! | TTTTCATTTTGCTTCTTATT+TGG | + | chr5.3:25520469-25520488 | MS.gene58551:intron | 20.0% |
| ! | ATATAAGCTAACCAAAAGTA+TGG | + | chr5.3:25521439-25521458 | MS.gene58551:intron | 25.0% |
| ! | CTAGTGTTTAGAAATCAAAA+TGG | - | chr5.3:25520363-25520382 | None:intergenic | 25.0% |
| ! | GAAAATGTTGACAAAGTAAA+CGG | - | chr5.3:25520737-25520756 | None:intergenic | 25.0% |
| ! | GAATTTCTTTGCTTTATAAC+TGG | + | chr5.3:25521491-25521510 | MS.gene58551:intron | 25.0% |
| ! | GTTTAAAAGTGATAAGCAAT+TGG | - | chr5.3:25519144-25519163 | None:intergenic | 25.0% |
| ! | TAAGAAGCAAAATGAAAAAG+CGG | - | chr5.3:25520467-25520486 | None:intergenic | 25.0% |
| ! | TCTAGAAAGAGAATTAAGAA+AGG | - | chr5.3:25521248-25521267 | None:intergenic | 25.0% |
| ! | TGATTATTCATGATCACTAA+TGG | - | chr5.3:25519305-25519324 | None:intergenic | 25.0% |
| ! | TTTCCTACTTATTCAACTTA+AGG | + | chr5.3:25519712-25519731 | MS.gene58551:intron | 25.0% |
| !! | ATGACATTTTTGTATAAACC+GGG | + | chr5.3:25519401-25519420 | MS.gene58551:intron | 25.0% |
| !! | CATGACATTTTTGTATAAAC+CGG | + | chr5.3:25519400-25519419 | MS.gene58551:intron | 25.0% |
| !! | CATTTAAATTGACTTCTTAG+AGG | + | chr5.3:25519947-25519966 | MS.gene58551:intron | 25.0% |
| !! | GTTTGATTCTGCTTAATTTT+TGG | - | chr5.3:25520314-25520333 | None:intergenic | 25.0% |
| !!! | AAACACTACACTCTTTTTTT+TGG | - | chr5.3:25519766-25519785 | None:intergenic | 25.0% |
| !!! | AACACTACACTCTTTTTTTT+GGG | - | chr5.3:25519765-25519784 | None:intergenic | 25.0% |
| !!! | AACGCTACATTTTTTATTAC+AGG | - | chr5.3:25519629-25519648 | None:intergenic | 25.0% |
| !!! | AATTATCACATTCTGAAGTT+TGG | + | chr5.3:25519804-25519823 | MS.gene58551:intron | 25.0% |
| !!! | ATTTTGCTTCTTATTTGGAT+CGG | + | chr5.3:25520474-25520493 | MS.gene58551:intron | 25.0% |
| !!! | CATTTTGATTTCTAAACACT+AGG | + | chr5.3:25520361-25520380 | MS.gene58551:intron | 25.0% |
| !!! | GGTGCTTTTTTTAAAAGTTT+AGG | + | chr5.3:25520410-25520429 | MS.gene58551:intron | 25.0% |
| AAACAATTATTGTTCCTTGG+TGG | + | chr5.3:25519098-25519117 | MS.gene58551:intron | 30.0% | |
| AAAGCAAAGAAATTCTGTGA+AGG | - | chr5.3:25521486-25521505 | None:intergenic | 30.0% | |
| AACCATCACAAAATTCACTA+AGG | - | chr5.3:25520144-25520163 | None:intergenic | 30.0% | |
| AAGTAGTAGCTAACAACAAT+CGG | + | chr5.3:25521526-25521545 | MS.gene58551:intron | 30.0% | |
| AATCATCAATTGCAATAGCA+AGG | + | chr5.3:25518567-25518586 | MS.gene58551:CDS | 30.0% | |
| AATGGGAATAGTTTCAATCA+AGG | + | chr5.3:25521656-25521675 | MS.gene58551:CDS | 30.0% | |
| AATGTCTAAAAGGGCTAAAA+AGG | + | chr5.3:25518856-25518875 | MS.gene58551:CDS | 30.0% | |
| AGTGAACTTGAACAGTTATT+GGG | + | chr5.3:25521371-25521390 | MS.gene58551:intron | 30.0% | |
| AGTTGAATAAGTAGGAAATC+CGG | - | chr5.3:25519710-25519729 | None:intergenic | 30.0% | |
| ATGGGAATAGTTTCAATCAA+GGG | + | chr5.3:25521657-25521676 | MS.gene58551:CDS | 30.0% | |
| CAACTAATTTAAACGCTCTT+GGG | + | chr5.3:25519911-25519930 | MS.gene58551:intron | 30.0% | |
| CCAAGGAACAATAATTGTTT+AGG | - | chr5.3:25519098-25519117 | None:intergenic | 30.0% | |
| CCTAAACAATTATTGTTCCT+TGG | + | chr5.3:25519095-25519114 | MS.gene58551:intron | 30.0% | |
| GATAACATTTGTGTAGTTTG+AGG | + | chr5.3:25521314-25521333 | MS.gene58551:intron | 30.0% | |
| GTACATCACTAGTAATTAGT+CGG | + | chr5.3:25520054-25520073 | MS.gene58551:intron | 30.0% | |
| TAGAATATAAATGTGCTGCA+TGG | + | chr5.3:25520389-25520408 | MS.gene58551:intron | 30.0% | |
| TAGTAGAGTTTGGAAGAAAA+GGG | - | chr5.3:25518526-25518545 | None:intergenic | 30.0% | |
| TCAACTAATTTAAACGCTCT+TGG | + | chr5.3:25519910-25519929 | MS.gene58551:intron | 30.0% | |
| TCATTTCCTAAAACTTGTGT+TGG | + | chr5.3:25520762-25520781 | MS.gene58551:intron | 30.0% | |
| TCCTGACCATTAAATCAAAT+CGG | + | chr5.3:25520960-25520979 | MS.gene58551:intron | 30.0% | |
| TTGATTGAAACTATTCCCAT+TGG | - | chr5.3:25521657-25521676 | None:intergenic | 30.0% | |
| ! | AAGAGTCTCTTTTCTCATAT+TGG | + | chr5.3:25521130-25521149 | MS.gene58551:intron | 30.0% |
| ! | ATTTTTGTGTGTTAACCCTT+CGG | + | chr5.3:25518968-25518987 | MS.gene58551:intron | 30.0% |
| ! | CAAACATGCAATTTTTCATG+AGG | + | chr5.3:25520329-25520348 | MS.gene58551:intron | 30.0% |
| ! | CTTTTAAACGAGTTATCCTT+AGG | + | chr5.3:25519155-25519174 | MS.gene58551:intron | 30.0% |
| ! | GTAAAACCAACACAAGTTTT+AGG | - | chr5.3:25520771-25520790 | None:intergenic | 30.0% |
| ! | TTCCTAGGTGAAACAATTTT+TGG | - | chr5.3:25519060-25519079 | None:intergenic | 30.0% |
| !! | TCACCTTAAGTTGAATAAGT+AGG | - | chr5.3:25519718-25519737 | None:intergenic | 30.0% |
| !! | TGTGATAGTTTTACAGAGAA+TGG | - | chr5.3:25519359-25519378 | None:intergenic | 30.0% |
| !! | TTTTGCTTCTTATTTGGATC+GGG | + | chr5.3:25520475-25520494 | MS.gene58551:intron | 30.0% |
| !!! | AGATTGATGAAGGTGTTTTT+GGG | + | chr5.3:25518741-25518760 | MS.gene58551:CDS | 30.0% |
| !!! | GAACTCAGTTTTTTATCCTA+AGG | - | chr5.3:25519174-25519193 | None:intergenic | 30.0% |
| !!! | TGATTTTGAGATTTGAACGA+TGG | - | chr5.3:25518552-25518571 | None:intergenic | 30.0% |
| !!! | TTTAAGATTGGGGTTTTGTT+TGG | + | chr5.3:25520211-25520230 | MS.gene58551:intron | 30.0% |
| AATCAAGGGAACAATTCCTT+TGG | + | chr5.3:25521671-25521690 | MS.gene58551:CDS | 35.0% | |
| AATGCATGTTTGACAGAATC+AGG | - | chr5.3:25519259-25519278 | None:intergenic | 35.0% | |
| AATGTTGACAAAGTAAACGG+AGG | - | chr5.3:25520734-25520753 | None:intergenic | 35.0% | |
| AATTTAAACGCTCTTGGGTT+GGG | + | chr5.3:25519916-25519935 | MS.gene58551:intron | 35.0% | |
| ACACCTTCATCAATCTCATA+TGG | - | chr5.3:25518737-25518756 | None:intergenic | 35.0% | |
| AGTAGTAGCTAACAACAATC+GGG | + | chr5.3:25521527-25521546 | MS.gene58551:intron | 35.0% | |
| CAACAATAAAACTCATGAGC+AGG | - | chr5.3:25519483-25519502 | None:intergenic | 35.0% | |
| CTTAGTGAAGACTGAAGAAA+AGG | - | chr5.3:25518933-25518952 | None:intergenic | 35.0% | |
| GAACCATATGAGATTGATGA+AGG | + | chr5.3:25518731-25518750 | MS.gene58551:CDS | 35.0% | |
| GACCATTAAATCAAATCGGA+CGG | + | chr5.3:25520964-25520983 | MS.gene58551:intron | 35.0% | |
| GAGTGAACTTGAACAGTTAT+TGG | + | chr5.3:25521370-25521389 | MS.gene58551:intron | 35.0% | |
| GTAGTAGAGTTTGGAAGAAA+AGG | - | chr5.3:25518527-25518546 | None:intergenic | 35.0% | |
| GTCGCTTCTAACTTAATCAA+AGG | - | chr5.3:25519533-25519552 | None:intergenic | 35.0% | |
| GTTGAATAAGTAGGAAATCC+GGG | - | chr5.3:25519709-25519728 | None:intergenic | 35.0% | |
| TAATTTAAACGCTCTTGGGT+TGG | + | chr5.3:25519915-25519934 | MS.gene58551:intron | 35.0% | |
| TGAGTTCGAACTCTCAAAAA+TGG | - | chr5.3:25519859-25519878 | None:intergenic | 35.0% | |
| TTATTTGGATCGGGAAATTC+AGG | + | chr5.3:25520484-25520503 | MS.gene58551:intron | 35.0% | |
| TTCACTAAGGAGTTACAAAG+AGG | - | chr5.3:25520131-25520150 | None:intergenic | 35.0% | |
| TTCTTCAGTCTTCACTAAGT+TGG | + | chr5.3:25518934-25518953 | MS.gene58551:intron | 35.0% | |
| TTGAATAAGTAGGAAATCCG+GGG | - | chr5.3:25519708-25519727 | None:intergenic | 35.0% | |
| TTGTAGCTGAATAACTCAAG+TGG | + | chr5.3:25518704-25518723 | MS.gene58551:intron | 35.0% | |
| ! | AAAGAAGATAAAGTGCTAGC+TGG | + | chr5.3:25520835-25520854 | MS.gene58551:intron | 35.0% |
| ! | ATGCAATTTTTCATGAGGCA+TGG | + | chr5.3:25520334-25520353 | MS.gene58551:intron | 35.0% |
| ! | ATTGTTTCTTCACTACTGTG+TGG | + | chr5.3:25520574-25520593 | MS.gene58551:intron | 35.0% |
| ! | CAATTCCAGAACCATACTTT+TGG | - | chr5.3:25521453-25521472 | None:intergenic | 35.0% |
| ! | CTCCTTAGTGAATTTTGTGA+TGG | + | chr5.3:25520139-25520158 | MS.gene58551:intron | 35.0% |
| ! | GAATATTGACTGTGAATTGC+AGG | + | chr5.3:25521550-25521569 | MS.gene58551:intron | 35.0% |
| ! | TCCGATTTGATTTAATGGTC+AGG | - | chr5.3:25520964-25520983 | None:intergenic | 35.0% |
| ! | TTTTTGTATAAACCGGGCTT+CGG | + | chr5.3:25519407-25519426 | MS.gene58551:intron | 35.0% |
| !! | CACTGTATTTGCTGCAATTT+TGG | + | chr5.3:25521592-25521611 | MS.gene58551:CDS | 35.0% |
| !! | GAACATTGTTTTCTGAGAAG+TGG | - | chr5.3:25518486-25518505 | None:intergenic | 35.0% |
| !! | GTTTGGATTAGCTAATCTTG+TGG | + | chr5.3:25520228-25520247 | MS.gene58551:intron | 35.0% |
| !! | TTTTGGGTCAATTAGCATAG+TGG | - | chr5.3:25519749-25519768 | None:intergenic | 35.0% |
| !! | TTTTTGAGAGTTCGAACTCA+AGG | + | chr5.3:25519859-25519878 | MS.gene58551:intron | 35.0% |
| !!! | AGGTTTCTTTTGCTGTTGAT+GGG | + | chr5.3:25520504-25520523 | MS.gene58551:intron | 35.0% |
| !!! | ATTGATGAAGGTGTTTTTGG+GGG | + | chr5.3:25518743-25518762 | MS.gene58551:CDS | 35.0% |
| !!! | GAGATTGATGAAGGTGTTTT+TGG | + | chr5.3:25518740-25518759 | MS.gene58551:CDS | 35.0% |
| !!! | GATTGATGAAGGTGTTTTTG+GGG | + | chr5.3:25518742-25518761 | MS.gene58551:CDS | 35.0% |
| !!! | TAGGTGAAACAATTTTTGGC+CGG | - | chr5.3:25519056-25519075 | None:intergenic | 35.0% |
| AAGAGGAGAAGGAAACTTGA+AGG | - | chr5.3:25520114-25520133 | None:intergenic | 40.0% | |
| AAGGAGAAACTTACGAGTTG+AGG | - | chr5.3:25518914-25518933 | None:intergenic | 40.0% | |
| AAGGAGTTACAAAGAGGAGA+AGG | - | chr5.3:25520125-25520144 | None:intergenic | 40.0% | |
| ACCGTTCGATGTGATATCAA+TGG | - | chr5.3:25520916-25520935 | None:intergenic | 40.0% | |
| ACGATGGTTGTAGTAGAGTT+TGG | - | chr5.3:25518536-25518555 | None:intergenic | 40.0% | |
| ACTTGAACAGTTATTGGGAC+TGG | + | chr5.3:25521376-25521395 | MS.gene58551:intron | 40.0% | |
| AGAGTTTGGAAGAAAAGGGT+TGG | - | chr5.3:25518522-25518541 | None:intergenic | 40.0% | |
| AGCTAGGGATGTTGTATTTC+AGG | + | chr5.3:25521041-25521060 | MS.gene58551:intron | 40.0% | |
| AGTTGAGGAGATATCACTGT+AGG | - | chr5.3:25518899-25518918 | None:intergenic | 40.0% | |
| GCAAAATGAAAAAGCGGTCA+AGG | - | chr5.3:25520461-25520480 | None:intergenic | 40.0% | |
| GCCATTGATATCACATCGAA+CGG | + | chr5.3:25520912-25520931 | MS.gene58551:intron | 40.0% | |
| GGCCAAAAATTGTTTCACCT+AGG | + | chr5.3:25519055-25519074 | MS.gene58551:intron | 40.0% | |
| GGGTTAACACACAAAAATGC+CGG | - | chr5.3:25518966-25518985 | None:intergenic | 40.0% | |
| GTAGTAGCTAACAACAATCG+GGG | + | chr5.3:25521528-25521547 | MS.gene58551:intron | 40.0% | |
| TAGCTGAATAACTCAAGTGG+TGG | + | chr5.3:25518707-25518726 | MS.gene58551:intron | 40.0% | |
| TGAAACTATTCCCATTGGAC+TGG | - | chr5.3:25521652-25521671 | None:intergenic | 40.0% | |
| TTTATTACAGCAGGGAATCC+TGG | - | chr5.3:25520862-25520881 | None:intergenic | 40.0% | |
| TTTCACCTAGGAATCGAACT+CGG | + | chr5.3:25519067-25519086 | MS.gene58551:intron | 40.0% | |
| TTTCTCACTTCCAGTCCAAT+GGG | + | chr5.3:25521639-25521658 | MS.gene58551:CDS | 40.0% | |
| ! | AGGACGAGTCATTGTGATTT+TGG | - | chr5.3:25519239-25519258 | None:intergenic | 40.0% |
| ! | GACCCTTGTAATCTAGAGTT+CGG | + | chr5.3:25519012-25519031 | MS.gene58551:intron | 40.0% |
| ! | GCTAACCAAAAGTATGGTTC+TGG | + | chr5.3:25521445-25521464 | MS.gene58551:intron | 40.0% |
| ! | TGTTAACCCTTCGGTTTTCA+GGG | + | chr5.3:25518977-25518996 | MS.gene58551:intron | 40.0% |
| ! | TGTTGTCAAAGCACTTCTTG+AGG | + | chr5.3:25520550-25520569 | MS.gene58551:CDS | 40.0% |
| ! | TTAAATGCTCTTGGGTTGCA+TGG | + | chr5.3:25519567-25519586 | MS.gene58551:intron | 40.0% |
| ! | TTCACTAAGTTGGCGAAATC+CGG | + | chr5.3:25518944-25518963 | MS.gene58551:intron | 40.0% |
| ! | TTCTGAGAAGTGGTGAAGAT+TGG | - | chr5.3:25518476-25518495 | None:intergenic | 40.0% |
| ! | TTTTGTATAAACCGGGCTTC+GGG | + | chr5.3:25519408-25519427 | MS.gene58551:intron | 40.0% |
| !!! | CAGGTTTCTTTTGCTGTTGA+TGG | + | chr5.3:25520503-25520522 | MS.gene58551:intron | 40.0% |
| !!! | CTCAAGGTTTTTAGTCGAAC+TGG | + | chr5.3:25519875-25519894 | MS.gene58551:intron | 40.0% |
| !!! | GTGTTTTTGGGGGATATGAT+GGG | + | chr5.3:25518753-25518772 | MS.gene58551:CDS | 40.0% |
| AAAGGGCTAAAAAGGCTTCG+AGG | + | chr5.3:25518864-25518883 | MS.gene58551:CDS | 45.0% | |
| AAGTGGTGAAGATTGGAGCA+TGG | - | chr5.3:25518469-25518488 | None:intergenic | 45.0% | |
| ATATCCCTACCAACTGCTCA+CGG | - | chr5.3:25519658-25519677 | None:intergenic | 45.0% | |
| GATAAGCAATTGGGCTCAAG+TGG | - | chr5.3:25519134-25519153 | None:intergenic | 45.0% | |
| GGCCGAACTCTAGATTACAA+GGG | - | chr5.3:25519017-25519036 | None:intergenic | 45.0% | |
| GTTTCTCACTTCCAGTCCAA+TGG | + | chr5.3:25521638-25521657 | MS.gene58551:CDS | 45.0% | |
| TAACAGCAGGAAATCCAGTC+CGG | + | chr5.3:25521013-25521032 | MS.gene58551:intron | 45.0% | |
| TGGCCGAACTCTAGATTACA+AGG | - | chr5.3:25519018-25519037 | None:intergenic | 45.0% | |
| TTCACCTAGGAATCGAACTC+GGG | + | chr5.3:25519068-25519087 | MS.gene58551:intron | 45.0% | |
| TTGCAGGTCATCTGCAACAT+TGG | + | chr5.3:25521566-25521585 | MS.gene58551:intron | 45.0% | |
| ! | ACTGCGTGCTTTATTACAGC+AGG | - | chr5.3:25520871-25520890 | None:intergenic | 45.0% |
| ! | CTGCGTGCTTTATTACAGCA+GGG | - | chr5.3:25520870-25520889 | None:intergenic | 45.0% |
| ! | GGCCGTCCGATTTGATTTAA+TGG | - | chr5.3:25520969-25520988 | None:intergenic | 45.0% |
| ! | GGGATATGATGGGATTGAAG+AGG | + | chr5.3:25518763-25518782 | MS.gene58551:CDS | 45.0% |
| ! | GTGTTAACCCTTCGGTTTTC+AGG | + | chr5.3:25518976-25518995 | MS.gene58551:intron | 45.0% |
| ! | GTTAACCCTTCGGTTTTCAG+GGG | + | chr5.3:25518978-25518997 | MS.gene58551:intron | 45.0% |
| !! | AGCAGTTGGTAGGGATATTG+CGG | + | chr5.3:25519660-25519679 | MS.gene58551:intron | 45.0% |
| !!! | GGTGTTTTTGGGGGATATGA+TGG | + | chr5.3:25518752-25518771 | MS.gene58551:CDS | 45.0% |
| AGAACCCGAGTTCGATTCCT+AGG | - | chr5.3:25519075-25519094 | None:intergenic | 50.0% | |
| AGCGGTCAAGGACACATTGA+AGG | - | chr5.3:25520449-25520468 | None:intergenic | 50.0% | |
| ATATTGCGGTATGCAGGAGC+TGG | + | chr5.3:25519674-25519693 | MS.gene58551:intron | 50.0% | |
| ATCGGAATGCAACCCTGAGT+CGG | + | chr5.3:25519432-25519451 | MS.gene58551:intron | 50.0% | |
| CAACATCCCTAGCTAAGCAC+CGG | - | chr5.3:25521035-25521054 | None:intergenic | 50.0% | |
| CACCGTAGGCTGAGTTATGT+GGG | + | chr5.3:25521286-25521305 | MS.gene58551:intron | 50.0% | |
| CAGGACGCTGTAACAGATCA+GGG | - | chr5.3:25520990-25521009 | None:intergenic | 50.0% | |
| CAGGTCATCTGCAACATTGG+AGG | + | chr5.3:25521569-25521588 | MS.gene58551:intron | 50.0% | |
| CCTATCCCCTGAAAACCGAA+GGG | - | chr5.3:25518986-25519005 | None:intergenic | 50.0% | |
| CTCCCACATAACTCAGCCTA+CGG | - | chr5.3:25521291-25521310 | None:intergenic | 50.0% | |
| GGATTTCCTGCTGTTACAGC+AGG | - | chr5.3:25521009-25521028 | None:intergenic | 50.0% | |
| GTAGGCTGAGTTATGTGGGA+GGG | + | chr5.3:25521290-25521309 | MS.gene58551:intron | 50.0% | |
| GTAGGGATATTGCGGTATGC+AGG | + | chr5.3:25519668-25519687 | MS.gene58551:intron | 50.0% | |
| GTGAAGATTGGAGCATGGAG+AGG | - | chr5.3:25518464-25518483 | None:intergenic | 50.0% | |
| GTGGTTAATGAGCTCCACCA+AGG | - | chr5.3:25519115-25519134 | None:intergenic | 50.0% | |
| TATCCCTACCAACTGCTCAC+GGG | - | chr5.3:25519657-25519676 | None:intergenic | 50.0% | |
| TATTGCGGTATGCAGGAGCT+GGG | + | chr5.3:25519675-25519694 | MS.gene58551:intron | 50.0% | |
| TTTGGCCCTGCGTGTGATAT+GGG | + | chr5.3:25521610-25521629 | MS.gene58551:CDS | 50.0% | |
| ! | CAGGAGTTTTGCCACTCATG+TGG | - | chr5.3:25519464-25519483 | None:intergenic | 50.0% |
| ! | GATAAAGTGCTAGCTGGACC+AGG | + | chr5.3:25520841-25520860 | MS.gene58551:intron | 50.0% |
| ! | TTTTGGCCCTGCGTGTGATA+TGG | + | chr5.3:25521609-25521628 | MS.gene58551:CDS | 50.0% |
| !! | CCTTCGGTTTTCAGGGGATA+GGG | + | chr5.3:25518984-25519003 | MS.gene58551:intron | 50.0% |
| AATGCAACCCTGAGTCGGGT+GGG | + | chr5.3:25519437-25519456 | MS.gene58551:intron | 55.0% | |
| AGCTGCCCATATCACACGCA+GGG | - | chr5.3:25521618-25521637 | None:intergenic | 55.0% | |
| ATAAACCGGGCTTCGGGCAT+CGG | + | chr5.3:25519414-25519433 | MS.gene58551:intron | 55.0% | |
| ATCCAGTCCGGTGCTTAGCT+AGG | + | chr5.3:25521025-25521044 | MS.gene58551:intron | 55.0% | |
| ATCCCTACCAACTGCTCACG+GGG | - | chr5.3:25519656-25519675 | None:intergenic | 55.0% | |
| ATTGCGGTATGCAGGAGCTG+GGG | + | chr5.3:25519676-25519695 | MS.gene58551:intron | 55.0% | |
| CCCTATCCCCTGAAAACCGA+AGG | - | chr5.3:25518987-25519006 | None:intergenic | 55.0% | |
| CGTAGGCTGAGTTATGTGGG+AGG | + | chr5.3:25521289-25521308 | MS.gene58551:intron | 55.0% | |
| GCACCGTAGGCTGAGTTATG+TGG | + | chr5.3:25521285-25521304 | MS.gene58551:intron | 55.0% | |
| GCAGGACGCTGTAACAGATC+AGG | - | chr5.3:25520991-25521010 | None:intergenic | 55.0% | |
| GCCACGAGCTAAGTTAGGTC+CGG | + | chr5.3:25519034-25519053 | MS.gene58551:intron | 55.0% | |
| GTTCGGCCACGAGCTAAGTT+AGG | + | chr5.3:25519029-25519048 | MS.gene58551:intron | 55.0% | |
| GTTTAGTCCCCGTGAGCAGT+TGG | + | chr5.3:25519646-25519665 | MS.gene58551:intron | 55.0% | |
| TCCAGTCCGGTGCTTAGCTA+GGG | + | chr5.3:25521026-25521045 | MS.gene58551:intron | 55.0% | |
| TCGGAATGCAACCCTGAGTC+GGG | + | chr5.3:25519433-25519452 | MS.gene58551:intron | 55.0% | |
| !! | CCCTTCGGTTTTCAGGGGAT+AGG | + | chr5.3:25518983-25519002 | MS.gene58551:intron | 55.0% |
| AGTCCCCGTGAGCAGTTGGT+AGG | + | chr5.3:25519650-25519669 | MS.gene58551:intron | 60.0% | |
| ATGTGGTCCCACCCGACTCA+GGG | - | chr5.3:25519447-25519466 | None:intergenic | 60.0% | |
| CAGCGTCCTGCTGTAACAGC+AGG | + | chr5.3:25521000-25521019 | MS.gene58551:intron | 60.0% | |
| CAGCTGCCCATATCACACGC+AGG | - | chr5.3:25521619-25521638 | None:intergenic | 60.0% | |
| GAATGCAACCCTGAGTCGGG+TGG | + | chr5.3:25519436-25519455 | MS.gene58551:intron | 60.0% | |
| GCCGGACCTAACTTAGCTCG+TGG | - | chr5.3:25519038-25519057 | None:intergenic | 60.0% | |
| GGACTTGCGTGATGCACCGT+AGG | + | chr5.3:25521272-25521291 | MS.gene58551:intron | 60.0% | |
| ! | GTCCCCGTGAGCAGTTGGTA+GGG | + | chr5.3:25519651-25519670 | MS.gene58551:intron | 60.0% |
| !! | TCCCTAGCTAAGCACCGGAC+TGG | - | chr5.3:25521030-25521049 | None:intergenic | 60.0% |
| AGGAGCTGGGGTTCGAACCC+CGG | + | chr5.3:25519688-25519707 | MS.gene58551:intron | 65.0% | |
| CATGTGGTCCCACCCGACTC+AGG | - | chr5.3:25519448-25519467 | None:intergenic | 65.0% | |
| GCATTCCGATGCCCGAAGCC+CGG | - | chr5.3:25519422-25519441 | None:intergenic | 65.0% | |
| GTCGGGTGGGACCACATGAG+TGG | + | chr5.3:25519450-25519469 | MS.gene58551:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 25518421 | 25521706 | 25518421 | ID=MS.gene58551 |
| chr5.3 | mRNA | 25518421 | 25521706 | 25518421 | ID=MS.gene58551.t1;Parent=MS.gene58551 |
| chr5.3 | exon | 25518421 | 25518588 | 25518421 | ID=MS.gene58551.t1.exon1;Parent=MS.gene58551.t1 |
| chr5.3 | CDS | 25518421 | 25518588 | 25518421 | ID=cds.MS.gene58551.t1;Parent=MS.gene58551.t1 |
| chr5.3 | exon | 25518710 | 25518919 | 25518710 | ID=MS.gene58551.t1.exon2;Parent=MS.gene58551.t1 |
| chr5.3 | CDS | 25518710 | 25518919 | 25518710 | ID=cds.MS.gene58551.t1;Parent=MS.gene58551.t1 |
| chr5.3 | exon | 25520506 | 25520571 | 25520506 | ID=MS.gene58551.t1.exon3;Parent=MS.gene58551.t1 |
| chr5.3 | CDS | 25520506 | 25520571 | 25520506 | ID=cds.MS.gene58551.t1;Parent=MS.gene58551.t1 |
| chr5.3 | exon | 25521572 | 25521706 | 25521572 | ID=MS.gene58551.t1.exon4;Parent=MS.gene58551.t1 |
| chr5.3 | CDS | 25521572 | 25521706 | 25521572 | ID=cds.MS.gene58551.t1;Parent=MS.gene58551.t1 |
| Gene Sequence |
| Protein sequence |
