AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058082


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058082.t1 MTR_5g007210 94.479 163 8 1 1 162 1 163 3.56e-109 308
MS.gene058082.t1 MTR_5g024680 43.564 101 51 3 50 145 51 150 1.27e-17 75.5
MS.gene058082.t1 MTR_3g115930 42.857 98 52 3 61 156 68 163 5.45e-16 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058082.t1 AT5G16660 53.459 159 69 4 6 160 8 165 1.22e-50 160
MS.gene058082.t1 AT5G16660 54.375 160 66 6 6 161 8 164 4.14e-46 148
MS.gene058082.t1 AT3G02900 48.466 163 68 5 6 161 7 160 2.38e-41 136
MS.gene058082.t1 AT3G02900 51.163 129 54 3 40 161 40 166 8.43e-37 125
MS.gene058082.t1 AT1G42960 41.228 114 59 4 49 156 51 162 1.84e-19 80.5

Find 47 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTGCTGGCTTTCTTC+TGG 0.108341 5.1:+1747906 MS.gene058082:CDS
CTGCTAAATGAAGATGAATA+TGG 0.203723 5.1:+1749164 MS.gene058082:CDS
CTTCAAATGCCTTCAAATTC+AGG 0.204641 5.1:-1749552 None:intergenic
AGAGGTGGGGATTTGGTTGC+TGG 0.280443 5.1:+1747895 MS.gene058082:CDS
TTGGTTGCTGGCTTTCTTCT+GGG 0.303767 5.1:+1747907 MS.gene058082:CDS
CTGCACGAACCGGTGAAATA+AGG 0.322738 5.1:-1747005 None:intergenic
TGATAACAGAGGTGGGGATT+TGG 0.357687 5.1:+1747888 MS.gene058082:CDS
AGCCCTTCGTCATAATAATA+AGG 0.364499 5.1:-1749209 None:intergenic
ATTCAGGATCACTTTCTAAA+GGG 0.373701 5.1:-1749536 None:intergenic
GCGCCATTATCGATTTCTTC+AGG 0.380646 5.1:+1746536 MS.gene058082:CDS
TATCAATGGCAGAATTTAGT+TGG 0.383082 5.1:-1749467 None:intergenic
CGGTGAAATAAGGTTCCTTC+TGG 0.390363 5.1:-1746995 None:intergenic
GAAAGTGATCCTGAATTTGA+AGG 0.404369 5.1:+1749543 MS.gene058082:CDS
TTGGCCTATCTTATCATTCA+AGG 0.409252 5.1:-1749448 None:intergenic
AAGCGTAATTCATCTGTGTT+TGG 0.421907 5.1:+1746931 MS.gene058082:CDS
AATTCAGGATCACTTTCTAA+AGG 0.440983 5.1:-1749537 None:intergenic
ATAATAATAAGGTGGTCTTC+TGG 0.441088 5.1:-1749198 None:intergenic
TACCGTTGTTCTGCACGAAC+CGG 0.449371 5.1:-1747015 None:intergenic
CTTTGAACAGCAGCAAGCTT+AGG 0.449964 5.1:-1746955 None:intergenic
GTTTCTGAATGCAGAGGACC+AGG 0.463024 5.1:+1749421 MS.gene058082:intron
TGCTAAATGAAGATGAATAT+GGG 0.463822 5.1:+1749165 MS.gene058082:CDS
TGACCTGAAGAAATCGATAA+TGG 0.468078 5.1:-1746539 None:intergenic
GAGACCTTGAATGATAAGAT+AGG 0.479761 5.1:+1749444 MS.gene058082:CDS
CAGAAGGAACCTTATTTCAC+CGG 0.501192 5.1:+1746996 MS.gene058082:CDS
CTTATCATTCAAGGTCTCCC+TGG 0.516050 5.1:-1749439 None:intergenic
CTAAGCTTGCTGCTGTTCAA+AGG 0.526007 5.1:+1746956 MS.gene058082:CDS
CACCTTATTATTATGACGAA+GGG 0.542517 5.1:+1749207 MS.gene058082:CDS
ACGTACAGATATATTATCAA+TGG 0.553012 5.1:-1749481 None:intergenic
AAGATGAATATGGGTTTCGT+AGG 0.554302 5.1:+1749174 MS.gene058082:CDS
TAAGGTTCCTTCTGGTCACA+AGG 0.558149 5.1:-1746987 None:intergenic
TTCAGGATCACTTTCTAAAG+GGG 0.565814 5.1:-1749535 None:intergenic
CTTTCTAAAGGGGCAGCAGT+AGG 0.569227 5.1:-1749525 None:intergenic
CACCGGTTCGTGCAGAACAA+CGG 0.572053 5.1:+1747013 MS.gene058082:CDS
TGGCGCGAATGAAGTTGCCA+TGG 0.574110 5.1:-1746519 None:intergenic
AATCAAACCTTGTGACCAGA+AGG 0.589168 5.1:+1746980 MS.gene058082:CDS
CCACCTTATTATTATGACGA+AGG 0.599010 5.1:+1749206 MS.gene058082:CDS
GTTGCTGGCTTTCTTCTGGG+TGG 0.601949 5.1:+1747910 MS.gene058082:CDS
TTGTGCAGTGATAACAGAGG+TGG 0.604543 5.1:+1747880 MS.gene058082:intron
TTATTATGACGAAGGGCTAG+AGG 0.609430 5.1:+1749214 MS.gene058082:CDS
TGTGCAGTGATAACAGAGGT+GGG 0.614866 5.1:+1747881 MS.gene058082:intron
AGATGAATATGGGTTTCGTA+GGG 0.632129 5.1:+1749175 MS.gene058082:CDS
GGCGCGAATGAAGTTGCCAT+GGG 0.638975 5.1:-1746518 None:intergenic
AATATATCTGTACGTCTGAG+AGG 0.656883 5.1:+1749489 MS.gene058082:CDS
GTGCAGTGATAACAGAGGTG+GGG 0.664089 5.1:+1747882 MS.gene058082:intron
CCTTCGTCATAATAATAAGG+TGG 0.668403 5.1:-1749206 None:intergenic
TTTCTGAATGCAGAGGACCA+GGG 0.699975 5.1:+1749422 MS.gene058082:intron
CCTTTGTGCAGTGATAACAG+AGG 0.741745 5.1:+1747877 MS.gene058082:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATAAACTTAATTACAA+AGG - chr5.1:1748265-1748284 None:intergenic 15.0%
!! AATCATAATCATAATTGAAA+TGG - chr5.1:1746832-1746851 None:intergenic 15.0%
!!! ACTTCATTGAATTTAATTTT+AGG + chr5.1:1746601-1746620 MS.gene058082:intron 15.0%
!!! ATATGTTTTTTTCAAACAAA+TGG + chr5.1:1747682-1747701 MS.gene058082:intron 15.0%
!!! CATTTTCACTTAAAATTTAA+AGG + chr5.1:1747634-1747653 MS.gene058082:intron 15.0%
!!! CTTCATTGAATTTAATTTTA+GGG + chr5.1:1746602-1746621 MS.gene058082:intron 15.0%
!!! CTTTAAATTTTAAGTGAAAA+TGG - chr5.1:1747636-1747655 None:intergenic 15.0%
!!! TAATAATAGCTTAGATTTTT+CGG + chr5.1:1746730-1746749 MS.gene058082:intron 15.0%
!! AAAAAAAAAAAAGACTCGTA+TGG + chr5.1:1748567-1748586 MS.gene058082:intron 20.0%
!! AAATATTGAATATAAAGCCA+AGG - chr5.1:1749252-1749271 None:intergenic 20.0%
!! AATATTGAATATAAAGCCAA+GGG - chr5.1:1749251-1749270 None:intergenic 20.0%
!! AGAAGATATATTATCATTGA+TGG - chr5.1:1748532-1748551 None:intergenic 20.0%
!! TAGAATAATAAACGAAGAAA+TGG - chr5.1:1746659-1746678 None:intergenic 20.0%
!! TGAATTCGAAAAACAAAAAA+AGG - chr5.1:1746796-1746815 None:intergenic 20.0%
!!! ATTCAATATTTTTGTGTAGT+TGG + chr5.1:1749261-1749280 MS.gene058082:intron 20.0%
! AAAAATATCATGAAAGAGAG+AGG - chr5.1:1747725-1747744 None:intergenic 25.0%
! ACGTACAGATATATTATCAA+TGG - chr5.1:1749484-1749503 None:intergenic 25.0%
! AGATAAGCTAGAACTATATA+AGG - chr5.1:1747421-1747440 None:intergenic 25.0%
! AGATTACAATCAATTTACGT+CGG + chr5.1:1746690-1746709 MS.gene058082:intron 25.0%
! ATTTGCAATAAAACTGAAGT+AGG - chr5.1:1747986-1748005 None:intergenic 25.0%
! GTTATTATGTCTTAAGTACT+CGG + chr5.1:1748935-1748954 MS.gene058082:intron 25.0%
! TAAACTTGTGTCAATTCTTA+TGG + chr5.1:1748334-1748353 MS.gene058082:intron 25.0%
! TAAGACATAATAACAAGAGA+GGG - chr5.1:1748929-1748948 None:intergenic 25.0%
! TGCTAAATGAAGATGAATAT+GGG + chr5.1:1749165-1749184 MS.gene058082:CDS 25.0%
! TTAAGACATAATAACAAGAG+AGG - chr5.1:1748930-1748949 None:intergenic 25.0%
!! ATCTTATAGGTTGCTTATTT+TGG + chr5.1:1747819-1747838 MS.gene058082:intron 25.0%
!! ATGTATAGTTATTGACTGTT+TGG + chr5.1:1747100-1747119 MS.gene058082:intron 25.0%
!! CAAGAATCTCTATTTACTTT+TGG + chr5.1:1747363-1747382 MS.gene058082:intron 25.0%
!! GAATTAACTTTTCAAAGGAT+AGG + chr5.1:1748744-1748763 MS.gene058082:intron 25.0%
!! GAGTATTGCTGTTAATATAA+TGG - chr5.1:1748597-1748616 None:intergenic 25.0%
!!! AATTGATTTGATTTTGCAGT+TGG + chr5.1:1746871-1746890 MS.gene058082:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG - chr5.1:1747232-1747251 None:intergenic 25.0%
!!! TTAAGTTTATAGTTTGCTGA+TGG + chr5.1:1748271-1748290 MS.gene058082:intron 25.0%
!!! TTATTTTAGCAAAACGTTGA+AGG + chr5.1:1748960-1748979 MS.gene058082:intron 25.0%
!!! TTTTTCAAACAAATGGTGAA+TGG + chr5.1:1747689-1747708 MS.gene058082:intron 25.0%
AATGGTACTAAACTCACATA+TGG - chr5.1:1748498-1748517 None:intergenic 30.0%
AATTCAGGATCACTTTCTAA+AGG - chr5.1:1749540-1749559 None:intergenic 30.0%
ACATACTATGAGCTTCTAAA+TGG - chr5.1:1749114-1749133 None:intergenic 30.0%
AGAGAGCTTTCAAAAAAGTT+GGG + chr5.1:1748306-1748325 MS.gene058082:intron 30.0%
ATAATAATAAGGTGGTCTTC+TGG - chr5.1:1749201-1749220 None:intergenic 30.0%
ATGGTACTAAACTCACATAT+GGG - chr5.1:1748497-1748516 None:intergenic 30.0%
ATTCAGGATCACTTTCTAAA+GGG - chr5.1:1749539-1749558 None:intergenic 30.0%
ATTGTATTCTTAGAGAGTAG+TGG + chr5.1:1748400-1748419 MS.gene058082:intron 30.0%
CACCTTATTATTATGACGAA+GGG + chr5.1:1749207-1749226 MS.gene058082:CDS 30.0%
CATTAAACAAATGTTGCACT+AGG - chr5.1:1748713-1748732 None:intergenic 30.0%
CTGCTAAATGAAGATGAATA+TGG + chr5.1:1749164-1749183 MS.gene058082:CDS 30.0%
GAGATGAATAGAAACGAAAA+GGG - chr5.1:1746574-1746593 None:intergenic 30.0%
GGATTTCTAATTATAAGCCA+CGG - chr5.1:1747047-1747066 None:intergenic 30.0%
TAGAAGCTCATAGTATGTTA+TGG + chr5.1:1749116-1749135 MS.gene058082:intron 30.0%
TATCAATGGCAGAATTTAGT+TGG - chr5.1:1749470-1749489 None:intergenic 30.0%
TGAAATCAGAAGATACAAGT+GGG - chr5.1:1747613-1747632 None:intergenic 30.0%
TGAGATGAATAGAAACGAAA+AGG - chr5.1:1746575-1746594 None:intergenic 30.0%
TTGATGGAGATAAGTACAAA+TGG - chr5.1:1748516-1748535 None:intergenic 30.0%
TTGTATATAAATGCCCTGTT+TGG - chr5.1:1747338-1747357 None:intergenic 30.0%
! AAACAGGGCATTTATATACA+AGG + chr5.1:1747337-1747356 MS.gene058082:intron 30.0%
! AAGTATTTTCACACTAGATG+GGG + chr5.1:1747460-1747479 MS.gene058082:intron 30.0%
! ACAAGTATTTTCACACTAGA+TGG + chr5.1:1747458-1747477 MS.gene058082:intron 30.0%
! ACTACTAACTTTTCCATCTT+TGG + chr5.1:1748902-1748921 MS.gene058082:intron 30.0%
! AGGCTCTCTTTTTATAAGTT+AGG - chr5.1:1748245-1748264 None:intergenic 30.0%
! CAAGTATTTTCACACTAGAT+GGG + chr5.1:1747459-1747478 MS.gene058082:intron 30.0%
! CACAAAATGAATTTGAAGTC+GGG + chr5.1:1747066-1747085 MS.gene058082:intron 30.0%
! CCACAAAATGAATTTGAAGT+CGG + chr5.1:1747065-1747084 MS.gene058082:intron 30.0%
! CTATCCAAAAAGTATGAGAA+AGG + chr5.1:1748044-1748063 MS.gene058082:intron 30.0%
! CTCTAAGAATACAATCCAAT+GGG - chr5.1:1748395-1748414 None:intergenic 30.0%
! GAGCTGAATTAACTTTTCAA+AGG + chr5.1:1748739-1748758 MS.gene058082:intron 30.0%
! GGTTTTTGATAGAACACTAT+GGG + chr5.1:1749292-1749311 MS.gene058082:intron 30.0%
! GTTGTTGTTGTTGTTGTAAT+TGG + chr5.1:1749364-1749383 MS.gene058082:intron 30.0%
! GTTTTTGATAGAACACTATG+GGG + chr5.1:1749293-1749312 MS.gene058082:intron 30.0%
! TCTCTAAGAATACAATCCAA+TGG - chr5.1:1748396-1748415 None:intergenic 30.0%
! TCTTCCTTTCTCATACTTTT+TGG - chr5.1:1748051-1748070 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr5.1:1749291-1749310 MS.gene058082:intron 30.0%
! TTTGTGTAGTTGGTATATAC+TGG + chr5.1:1749271-1749290 MS.gene058082:intron 30.0%
AAACAGTCACACAAAACCTA+TGG - chr5.1:1747152-1747171 None:intergenic 35.0%
AAGATGAATATGGGTTTCGT+AGG + chr5.1:1749174-1749193 MS.gene058082:CDS 35.0%
AAGCGTAATTCATCTGTGTT+TGG + chr5.1:1746931-1746950 MS.gene058082:CDS 35.0%
AATATATCTGTACGTCTGAG+AGG + chr5.1:1749489-1749508 MS.gene058082:CDS 35.0%
ACCTAGAAACTAGTCCAAAT+TGG - chr5.1:1748187-1748206 None:intergenic 35.0%
AGAAACGAAAAGGGAAAAAG+AGG - chr5.1:1746565-1746584 None:intergenic 35.0%
AGATGAATATGGGTTTCGTA+GGG + chr5.1:1749175-1749194 MS.gene058082:CDS 35.0%
AGCCCTTCGTCATAATAATA+AGG - chr5.1:1749212-1749231 None:intergenic 35.0%
CAATATGCTGCATTGCAAAT+GGG + chr5.1:1748823-1748842 MS.gene058082:intron 35.0%
CCACCTTATTATTATGACGA+AGG + chr5.1:1749206-1749225 MS.gene058082:CDS 35.0%
CCATGTGATAAATGACTACT+CGG + chr5.1:1748079-1748098 MS.gene058082:intron 35.0%
CCTAGAAACTAGTCCAAATT+GGG - chr5.1:1748186-1748205 None:intergenic 35.0%
CCTTCGTCATAATAATAAGG+TGG - chr5.1:1749209-1749228 None:intergenic 35.0%
GAAAGTGATCCTGAATTTGA+AGG + chr5.1:1749543-1749562 MS.gene058082:CDS 35.0%
GACCAGATGTGAAGAAATAA+TGG + chr5.1:1747557-1747576 MS.gene058082:intron 35.0%
GAGACCTTGAATGATAAGAT+AGG + chr5.1:1749444-1749463 MS.gene058082:CDS 35.0%
GAGAGAGCTTTCAAAAAAGT+TGG + chr5.1:1748305-1748324 MS.gene058082:intron 35.0%
GCAACCTATAAGATCAAGAA+AGG - chr5.1:1747813-1747832 None:intergenic 35.0%
GTGAAATCAGAAGATACAAG+TGG - chr5.1:1747614-1747633 None:intergenic 35.0%
TAGGAAAACAGCTTATGACA+TGG + chr5.1:1747181-1747200 MS.gene058082:intron 35.0%
TATGGGGATGAATGAAGTAT+AGG - chr5.1:1748480-1748499 None:intergenic 35.0%
TCAAACAAATGGTGAATGGT+CGG + chr5.1:1747693-1747712 MS.gene058082:intron 35.0%
TCATTAACTACAGCCCAATT+TGG + chr5.1:1748170-1748189 MS.gene058082:intron 35.0%
TGAAGTGATGAAGAGTTAGT+AGG - chr5.1:1748681-1748700 None:intergenic 35.0%
TGACCTGAAGAAATCGATAA+TGG - chr5.1:1746542-1746561 None:intergenic 35.0%
TGCACCTTTCTTGATCTTAT+AGG + chr5.1:1747806-1747825 MS.gene058082:intron 35.0%
TGCCATTCATAAAACAGACA+TGG - chr5.1:1748366-1748385 None:intergenic 35.0%
TGCGAATCTAAGCAATTCAT+GGG - chr5.1:1746761-1746780 None:intergenic 35.0%
TGGTACTAAACTCACATATG+GGG - chr5.1:1748496-1748515 None:intergenic 35.0%
TTCAAACATAGCAACTAGCA+TGG - chr5.1:1747523-1747542 None:intergenic 35.0%
TTGAGCTTATCTATTGCCAT+AGG + chr5.1:1747133-1747152 MS.gene058082:intron 35.0%
TTGCGAATCTAAGCAATTCA+TGG - chr5.1:1746762-1746781 None:intergenic 35.0%
TTGGCCTATCTTATCATTCA+AGG - chr5.1:1749451-1749470 None:intergenic 35.0%
! CACCATTATTTCTTCACATC+TGG - chr5.1:1747562-1747581 None:intergenic 35.0%
! CCGACTTCAAATTCATTTTG+TGG - chr5.1:1747068-1747087 None:intergenic 35.0%
! CTCCATGTCTGTTTTATGAA+TGG + chr5.1:1748361-1748380 MS.gene058082:intron 35.0%
! TTCAGGATCACTTTCTAAAG+GGG - chr5.1:1749538-1749557 None:intergenic 35.0%
!! TGATTTGATTTTGCAGTTGG+TGG + chr5.1:1746874-1746893 MS.gene058082:intron 35.0%
AAGTAGGAAGAAATCACCTG+AGG - chr5.1:1747970-1747989 None:intergenic 40.0%
AATCAAACCTTGTGACCAGA+AGG + chr5.1:1746980-1746999 MS.gene058082:CDS 40.0%
ACTCTTTGCTGAGACAAACT+AGG - chr5.1:1749014-1749033 None:intergenic 40.0%
CCGAGTAGTCATTTATCACA+TGG - chr5.1:1748082-1748101 None:intergenic 40.0%
GAAGTATAGGCGGTAATAAC+AGG - chr5.1:1748467-1748486 None:intergenic 40.0%
GCAATATGCTGCATTGCAAA+TGG + chr5.1:1748822-1748841 MS.gene058082:intron 40.0%
GTGACTGTTTGAGAGAACTT+AGG + chr5.1:1747162-1747181 MS.gene058082:intron 40.0%
TGAATGGCATGTAAACCCAT+TGG + chr5.1:1748377-1748396 MS.gene058082:intron 40.0%
TGCACAAAGGAGACAGTTAA+TGG - chr5.1:1747867-1747886 None:intergenic 40.0%
TTATTATGACGAAGGGCTAG+AGG + chr5.1:1749214-1749233 MS.gene058082:CDS 40.0%
! CAGAAGGAACCTTATTTCAC+CGG + chr5.1:1746996-1747015 MS.gene058082:CDS 40.0%
! CGCTTTGTTGAAAAAAGCTC+AGG - chr5.1:1746916-1746935 None:intergenic 40.0%
! CTTTTGAATGCTTCGAGCAT+TGG + chr5.1:1747768-1747787 MS.gene058082:intron 40.0%
!! AGTTTGCTGATGGAAGAGTT+AGG + chr5.1:1748281-1748300 MS.gene058082:intron 40.0%
!! CCCAATTTGGACTAGTTTCT+AGG + chr5.1:1748183-1748202 MS.gene058082:intron 40.0%
!! TATGCTGTTTCTGAATGCAG+AGG + chr5.1:1749415-1749434 MS.gene058082:intron 40.0%
AACAAGAGAGGGTCCAAAGA+TGG - chr5.1:1748918-1748937 None:intergenic 45.0%
ACGAAGGGCTAGAGGTAATT+TGG + chr5.1:1749222-1749241 MS.gene058082:intron 45.0%
AGTGAGTTGTCTGTCCAAAC+AGG + chr5.1:1747321-1747340 MS.gene058082:intron 45.0%
CCTCTGTTATCACTGCACAA+AGG - chr5.1:1747880-1747899 None:intergenic 45.0%
CCTTTGTGCAGTGATAACAG+AGG + chr5.1:1747877-1747896 MS.gene058082:intron 45.0%
CGGTGAAATAAGGTTCCTTC+TGG - chr5.1:1746998-1747017 None:intergenic 45.0%
CTTATCATTCAAGGTCTCCC+TGG - chr5.1:1749442-1749461 None:intergenic 45.0%
CTTTGAACAGCAGCAAGCTT+AGG - chr5.1:1746958-1746977 None:intergenic 45.0%
GATACAAGTGGGACATACAG+AGG - chr5.1:1747602-1747621 None:intergenic 45.0%
GGGGATGAATGAAGTATAGG+CGG - chr5.1:1748477-1748496 None:intergenic 45.0%
GTGAGTTGTCTGTCCAAACA+GGG + chr5.1:1747322-1747341 MS.gene058082:intron 45.0%
TAAGGTTCCTTCTGGTCACA+AGG - chr5.1:1746990-1747009 None:intergenic 45.0%
TGATAACAGAGGTGGGGATT+TGG + chr5.1:1747888-1747907 MS.gene058082:CDS 45.0%
TGTGCAGTGATAACAGAGGT+GGG + chr5.1:1747881-1747900 MS.gene058082:intron 45.0%
TTGTGCAGTGATAACAGAGG+TGG + chr5.1:1747880-1747899 MS.gene058082:intron 45.0%
TTTCTGAATGCAGAGGACCA+GGG + chr5.1:1749422-1749441 MS.gene058082:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5.1:1749340-1749359 None:intergenic 45.0%
! AGAGGTAATTTGGCTTCCCT+TGG + chr5.1:1749232-1749251 MS.gene058082:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5.1:1749341-1749360 None:intergenic 45.0%
!! CTAAGCTTGCTGCTGTTCAA+AGG + chr5.1:1746956-1746975 MS.gene058082:CDS 45.0%
!! GCGCCATTATCGATTTCTTC+AGG + chr5.1:1746536-1746555 MS.gene058082:CDS 45.0%
!! GGCTTATGTTTTTGCTCCTC+AGG + chr5.1:1747951-1747970 MS.gene058082:CDS 45.0%
!! TTGGTTGCTGGCTTTCTTCT+GGG + chr5.1:1747907-1747926 MS.gene058082:CDS 45.0%
!! TTTGGTTGCTGGCTTTCTTC+TGG + chr5.1:1747906-1747925 MS.gene058082:CDS 45.0%
!!! CTTCTGGGTGGTGCTATTTT+CGG + chr5.1:1747922-1747941 MS.gene058082:CDS 45.0%
!!! GCTGGTTGGGTGCATTTTTT+GGG + chr5.1:1748437-1748456 MS.gene058082:intron 45.0%
!!! TGCTGGTTGGGTGCATTTTT+TGG + chr5.1:1748436-1748455 MS.gene058082:intron 45.0%
!!! TGGTGCTATTTTCGGAACTC+TGG + chr5.1:1747930-1747949 MS.gene058082:CDS 45.0%
CCACTTAGTGGGATAAGGCT+TGG + chr5.1:1749339-1749358 MS.gene058082:intron 50.0%
CTGCACGAACCGGTGAAATA+AGG - chr5.1:1747008-1747027 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr5.1:1749336-1749355 None:intergenic 50.0%
GAACAACGGTATGTCATCCG+TGG + chr5.1:1747027-1747046 MS.gene058082:intron 50.0%
GTGCAGTGATAACAGAGGTG+GGG + chr5.1:1747882-1747901 MS.gene058082:intron 50.0%
GTTTCTGAATGCAGAGGACC+AGG + chr5.1:1749421-1749440 MS.gene058082:intron 50.0%
TACCGTTGTTCTGCACGAAC+CGG - chr5.1:1747018-1747037 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr5.1:1749342-1749361 None:intergenic 50.0%
! CTTTCTAAAGGGGCAGCAGT+AGG - chr5.1:1749528-1749547 None:intergenic 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr5.1:1749328-1749347 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr5.1:1749327-1749346 MS.gene058082:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr5.1:1749334-1749353 MS.gene058082:intron 55.0%
TAGAGAGTAGTGGCGCCTCT+GGG + chr5.1:1748410-1748429 MS.gene058082:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr5.1:1749328-1749347 MS.gene058082:intron 55.0%
TTAGAGAGTAGTGGCGCCTC+TGG + chr5.1:1748409-1748428 MS.gene058082:intron 55.0%
! AGAGGTGGGGATTTGGTTGC+TGG + chr5.1:1747895-1747914 MS.gene058082:CDS 55.0%
!! CACCGGTTCGTGCAGAACAA+CGG + chr5.1:1747013-1747032 MS.gene058082:CDS 55.0%
!! GTTGCTGGCTTTCTTCTGGG+TGG + chr5.1:1747910-1747929 MS.gene058082:CDS 55.0%
ACCCAACCAGCACAGCCCAG+AGG - chr5.1:1748428-1748447 None:intergenic 65.0%
!! GCCTCTGGGCTGTGCTGGTT+GGG + chr5.1:1748424-1748443 MS.gene058082:intron 65.0%
! CGCCTCTGGGCTGTGCTGGT+TGG + chr5.1:1748423-1748442 MS.gene058082:intron 70.0%
GTGGCGCCTCTGGGCTGTGC+TGG + chr5.1:1748419-1748438 MS.gene058082:intron 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 1746521 1749572 1746521 ID=MS.gene058082
chr5.1 mRNA 1746521 1749572 1746521 ID=MS.gene058082.t1;Parent=MS.gene058082
chr5.1 exon 1746521 1746557 1746521 ID=MS.gene058082.t1.exon1;Parent=MS.gene058082.t1
chr5.1 CDS 1746521 1746557 1746521 ID=cds.MS.gene058082.t1;Parent=MS.gene058082.t1
chr5.1 exon 1746890 1747034 1746890 ID=MS.gene058082.t1.exon2;Parent=MS.gene058082.t1
chr5.1 CDS 1746890 1747034 1746890 ID=cds.MS.gene058082.t1;Parent=MS.gene058082.t1
chr5.1 exon 1747888 1747972 1747888 ID=MS.gene058082.t1.exon3;Parent=MS.gene058082.t1
chr5.1 CDS 1747888 1747972 1747888 ID=cds.MS.gene058082.t1;Parent=MS.gene058082.t1
chr5.1 exon 1749152 1749235 1749152 ID=MS.gene058082.t1.exon4;Parent=MS.gene058082.t1
chr5.1 CDS 1749152 1749235 1749152 ID=cds.MS.gene058082.t1;Parent=MS.gene058082.t1
chr5.1 exon 1749435 1749572 1749435 ID=MS.gene058082.t1.exon5;Parent=MS.gene058082.t1
chr5.1 CDS 1749435 1749572 1749435 ID=cds.MS.gene058082.t1;Parent=MS.gene058082.t1
Gene Sequence

>MS.gene058082

ATGGCAACTTCATTCGCGCCATTATCGATTTCTTCAGGTCACCTCTTTTTCCCTTTTCGTTTCTATTCATCTCACTCGTTACTTCATTGAATTTAATTTTAGGGTTTATGTTAATTCTTATGCTTTTCTTTATTTCCATTTCTTCGTTTATTATTCTACTTATATAGATAGATTACAATCAATTTACGTCGGAAAAAAAATGTAGATTATAATAATAGCTTAGATTTTTCGGAACATCCCATGAATTGCTTAGATTCGCAAATCTTTATTTTCCTTTTTTTGTTTTTCGAATTCAGTGTTTCGATTAACCATTTCAATTATGATTATGATTATTATTAGTACGAGATTTGAATTGATTTGATTTTGCAGTTGGTGGATCTCATGTGAAGTCACCTGAGCTTTTTTCAACAAAGCGTAATTCATCTGTGTTTGGACCTAAGCTTGCTGCTGTTCAAAGGAAATCAAACCTTGTGACCAGAAGGAACCTTATTTCACCGGTTCGTGCAGAACAACGGTATGTCATCCGTGGCTTATAATTAGAAATCCACAAAATGAATTTGAAGTCGGGCATATTTATTTATGTATAGTTATTGACTGTTTGGATTGACTTAGTTGAGCTTATCTATTGCCATAGGTTTTGTGTGACTGTTTGAGAGAACTTAGGAAAACAGCTTATGACATGGTTCATAAGCTATTTTTGTAGATTCTCCAAAATAGCTTATGAAAACAACTTACAGATTATACGAAAACAATTTAACTTTGCTTTATTATTATTTATTTATAAAAATATCTTATTTCTAAGTGAGTTGTCTGTCCAAACAGGGCATTTATATACAAGGTTTCAAGAATCTCTATTTACTTTTGGTGTCTGCACAAGTCATTCAGTAGTTATTTTAACCTTATATAGTTCTAGCTTATCTTTGATGTTAAAAACAATACAAGTATTTTCACACTAGATGGGGTTTCTTTGATGCTAAAACAAATCATAGAATAATCTTTCCATGCTAGTTGCTATGTTTGAATTTGTCAATCAAAAGACCAGATGTGAAGAAATAATGGTGATGTTCAATGTTTCTTTCCTCTGTATGTCCCACTTGTATCTTCTGATTTCACCATTTTCACTTAAAATTTAAAGGTCGACTTTCTCTCAGTGTATGCTTAATATGTTTTTTTCAAACAAATGGTGAATGGTCGGTTGAAACCTCTCTCTTTCATGATATTTTTTGAAATAGTTTTGTTCTAATTGTCTTTTGAATGCTTCGAGCATTGGTTGAAACATCAAATTTGCACCTTTCTTGATCTTATAGGTTGCTTATTTTGGAAGTTTATGTTAGTTGTTCTTTCCATTAACTGTCTCCTTTGTGCAGTGATAACAGAGGTGGGGATTTGGTTGCTGGCTTTCTTCTGGGTGGTGCTATTTTCGGAACTCTGGCTTATGTTTTTGCTCCTCAGGTGATTTCTTCCTACTTCAGTTTTATTGCAAATTTAACTGAAAACTATTTATGATAAATAAGCTTGATTTACTATCCAAAAAGTATGAGAAAGGAAGACAGAGTGACCATGTGATAAATGACTACTCGGTTTGTGTTAAAATATTAATGAGAAGACGCATTTGCTACAAGACTGAGTCAACAACAGCTTCTTAGTTATCATTAACTACAGCCCAATTTGGACTAGTTTCTAGGTGATAAAAACTTGTTAATTTAAATAATTATTTCATTCCTAACTTATAAAAAGAGAGCCTTTGTAATTAAGTTTATAGTTTGCTGATGGAAGAGTTAGGTGAGAGAGCTTTCAAAAAAGTTGGGATGCATAAACTTGTGTCAATTCTTATGGAAAGCTCCATGTCTGTTTTATGAATGGCATGTAAACCCATTGGATTGTATTCTTAGAGAGTAGTGGCGCCTCTGGGCTGTGCTGGTTGGGTGCATTTTTTGGGTGTACCTGTTATTACCGCCTATACTTCATTCATCCCCATATGTGAGTTTAGTACCATTTGTACTTATCTCCATCAATGATAATATATCTTCTTTGCTGTTTAAAAAAAAAAAAAAAAAAGACTCGTATGGAAAGCCATTATATTAACAGCAATACTCAATATTGTAAGATTATAATTATTTGAACTTTTTTTTATTGTTGTTTGTTGAAAAGTTTATGCCTACTAACTCTTCATCACTTCAGTTTTATTACCTAGTGCAACATTTGTTTAATGCTTCGAGAGCTGAATTAACTTTTCAAAGGATAGGAAAAGAATCGAAGAACTTTCTCTTTCATTTGCATTATCATTAATAATAGCAAATAGCAATATGCTGCATTGCAAATGGGTCATAGTGACGACTATTAGTTTTTATCGACAAAGTGAATGATGTCTGTTAAAGTATACTACTAACTTTTCCATCTTTGGACCCTCTCTTGTTATTATGTCTTAAGTACTCGGTGTTATTTTAGCAAAACGTTGAAGGACTAAAAATTTTAGTCATATTATTATAGCCTAGTTTGTCTCAGCAAAGAGTGATCTTTGCATTATCTATCTGATTGTCGTATTGCTTTTAGTTCTTTGACTTTTTACTCGCAAGAGATATCATTGTTTCCATTTAGAAGCTCATAGTATGTTATGGTGTTGACATGCAGATCAGAAAATCTCTGCTAAATGAAGATGAATATGGGTTTCGTAGGGCCAGAAGACCACCTTATTATTATGACGAAGGGCTAGAGGTAATTTGGCTTCCCTTGGCTTTATATTCAATATTTTTGTGTAGTTGGTATATACTGGTTTTTGATAGAACACTATGGGGTCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTGTTGTTGTAATTGGTATATGCTGAGTTTGTTTTTGATTATGTTATGCTGTTTCTGAATGCAGAGGACCAGGGAGACCTTGAATGATAAGATAGGCCAACTAAATTCTGCCATTGATAATATATCTGTACGTCTGAGAGGTAACAAGAAAGTGCCTACTGCTGCCCCTTTAGAAAGTGATCCTGAATTTGAAGGCATTTGA

Protein sequence

>MS.gene058082.t1

MATSFAPLSISSVGGSHVKSPELFSTKRNSSVFGPKLAAVQRKSNLVTRRNLISPVRAEQRDNRGGDLVAGFLLGGAIFGTLAYVFAPQIRKSLLNEDEYGFRRARRPPYYYDEGLERTRETLNDKIGQLNSAIDNISVRLRGNKKVPTAAPLESDPEFEGI