Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58555.t1 | XP_003613477.1 | 95.2 | 186 | 9 | 0 | 10 | 195 | 29 | 214 | 7.70E-94 | 353.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58555.t1 | G7K703 | 95.2 | 186 | 9 | 0 | 10 | 195 | 29 | 214 | 5.5e-94 | 353.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050941 | MS.gene58555 | 0.8191 | 1.39E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene58555 | 0.800546 | 1.37E-48 | -1.69E-46 |
| MS.gene06010 | MS.gene58555 | 0.80108 | 1.07E-48 | -1.69E-46 |
| MS.gene060296 | MS.gene58555 | 0.809752 | 1.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58555.t1 | MTR_5g037120 | 95.161 | 186 | 9 | 0 | 10 | 195 | 29 | 214 | 4.22e-131 | 367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58555.t1 | AT1G69980 | 50.000 | 184 | 76 | 3 | 13 | 195 | 37 | 205 | 4.54e-54 | 171 |
Find 32 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATAGATGAACACGTTTA+TGG | 0.204792 | 5.3:+25464347 | MS.gene58555:CDS |
| TTCAGCGAAGATTCTGAAAA+TGG | 0.322039 | 5.3:+25462771 | MS.gene58555:intron |
| TCTGAAAATGGACATGGGTT+TGG | 0.350341 | 5.3:+25462783 | MS.gene58555:CDS |
| CTTCACATTTGAATGGAATT+CGG | 0.363187 | 5.3:-25464235 | None:intergenic |
| TCTACTTTGGAAATTTCTAA+TGG | 0.380217 | 5.3:+25464311 | MS.gene58555:CDS |
| ACAGTCACAGAGAACATTAC+TGG | 0.393318 | 5.3:+25464385 | MS.gene58555:CDS |
| AAGAAGGCGGCTGCCATGTC+TGG | 0.412691 | 5.3:+25465993 | MS.gene58555:CDS |
| TTAATCTCTTCACATTTGAA+TGG | 0.418906 | 5.3:-25464242 | None:intergenic |
| TCAGAAAACTCGGTCTACTT+TGG | 0.434982 | 5.3:+25464298 | MS.gene58555:CDS |
| AAATATCGCTGTAGTGAGAC+AGG | 0.446528 | 5.3:+25464209 | MS.gene58555:CDS |
| TCTCCATACTCAAGATTTGA+GGG | 0.456044 | 5.3:-25461962 | None:intergenic |
| GAAGAGAAGTTGTCAGTGCT+TGG | 0.474771 | 5.3:+25464479 | MS.gene58555:CDS |
| CGCTTCAGATAATAAGTCAC+AGG | 0.478777 | 5.3:+25464418 | MS.gene58555:CDS |
| TTCTCCATACTCAAGATTTG+AGG | 0.479634 | 5.3:-25461963 | None:intergenic |
| TGGTTATGTTGCAGCAGGAA+GGG | 0.479759 | 5.3:+25466013 | MS.gene58555:CDS |
| AAGGAGCACAATCAAAAGTA+AGG | 0.483222 | 5.3:-25462851 | None:intergenic |
| AACTTCTCTTCAGTATCTGC+AGG | 0.509140 | 5.3:-25464467 | None:intergenic |
| CTGGTTATGTTGCAGCAGGA+AGG | 0.526430 | 5.3:+25466012 | MS.gene58555:CDS |
| GGTTATGTTGCAGCAGGAAG+GGG | 0.534822 | 5.3:+25466014 | MS.gene58555:CDS |
| TCCCTGCATCTACTCTGAAA+AGG | 0.539900 | 5.3:+25462887 | MS.gene58555:CDS |
| AAAGTAAGGTTACTTCCTGA+AGG | 0.543660 | 5.3:-25462837 | None:intergenic |
| CTGTGACTTATTATCTGAAG+CGG | 0.556905 | 5.3:-25464417 | None:intergenic |
| ATGTCTGGTTATGTTGCAGC+AGG | 0.568805 | 5.3:+25466008 | MS.gene58555:CDS |
| AAACAAAACCTCAGAAAACT+CGG | 0.582634 | 5.3:+25464288 | MS.gene58555:CDS |
| GAGTAGATGCAGGGAACACA+AGG | 0.584511 | 5.3:-25462879 | None:intergenic |
| CAGGGAACACAAGGACCAGA+AGG | 0.593395 | 5.3:-25462870 | None:intergenic |
| GAAGATTCTGAAAATGGACA+TGG | 0.623119 | 5.3:+25462777 | MS.gene58555:CDS |
| TGCTGCAACATAACCAGACA+TGG | 0.629175 | 5.3:-25466006 | None:intergenic |
| GAAGGGGTCAGACAAACTCT+CGG | 0.652174 | 5.3:+25466030 | MS.gene58555:CDS |
| AAGATTCTGAAAATGGACAT+GGG | 0.662218 | 5.3:+25462778 | MS.gene58555:CDS |
| AGAGATTAAACATTCAACGA+AGG | 0.680316 | 5.3:+25464256 | MS.gene58555:CDS |
| AATATCGCTGTAGTGAGACA+GGG | 0.738319 | 5.3:+25464210 | MS.gene58555:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGTAAAAATAATCATA+AGG | - | chr5.3:25462168-25462187 | None:intergenic | 10.0% |
| !! | TAAAGTAAAAATAATCATAA+GGG | - | chr5.3:25462167-25462186 | None:intergenic | 10.0% |
| !! | TCCATTAAAAAATAATTAAA+CGG | + | chr5.3:25462323-25462342 | MS.gene58555:intron | 10.0% |
| !! | AAATCAAACATCTTAAAATT+TGG | + | chr5.3:25465122-25465141 | MS.gene58555:intron | 15.0% |
| !! | AATATATATGCATATATGAA+TGG | - | chr5.3:25464725-25464744 | None:intergenic | 15.0% |
| !! | AATCAAACATCTTAAAATTT+GGG | + | chr5.3:25465123-25465142 | MS.gene58555:intron | 15.0% |
| !! | AATTGAAGTTATTCATAATT+AGG | + | chr5.3:25462952-25462971 | MS.gene58555:intron | 15.0% |
| !! | ATTGAAGTTATTCATAATTA+GGG | + | chr5.3:25462953-25462972 | MS.gene58555:intron | 15.0% |
| !!! | ACCGTTTAATTATTTTTTAA+TGG | - | chr5.3:25462327-25462346 | None:intergenic | 15.0% |
| !!! | TATAATAATAAATCTGAGAT+AGG | - | chr5.3:25464525-25464544 | None:intergenic | 15.0% |
| !!! | TATAATTCTAAAATAACAGA+AGG | - | chr5.3:25462933-25462952 | None:intergenic | 15.0% |
| !!! | TTTTTCTTGTTATTTGAATT+GGG | + | chr5.3:25462748-25462767 | MS.gene58555:intron | 15.0% |
| !!! | TTTTTGATAGAATAAAGTTT+AGG | - | chr5.3:25463346-25463365 | None:intergenic | 15.0% |
| !!! | TTTTTTAATGGATTTTACTA+TGG | - | chr5.3:25462315-25462334 | None:intergenic | 15.0% |
| !! | ATAAAATAAGAAACAGAGAA+TGG | + | chr5.3:25462473-25462492 | MS.gene58555:intron | 20.0% |
| !! | CAAAATCTTAATAGAAACTT+GGG | + | chr5.3:25462201-25462220 | MS.gene58555:intron | 20.0% |
| !! | TAGTTAACAATAAAGTAAAG+AGG | - | chr5.3:25464155-25464174 | None:intergenic | 20.0% |
| !! | TCAAAATCTTAATAGAAACT+TGG | + | chr5.3:25462200-25462219 | MS.gene58555:intron | 20.0% |
| !! | TCTTAAAAGAAAAATGTTGA+GGG | + | chr5.3:25462425-25462444 | MS.gene58555:intron | 20.0% |
| !! | TTCTTAAAAGAAAAATGTTG+AGG | + | chr5.3:25462424-25462443 | MS.gene58555:intron | 20.0% |
| !!! | AAATTATTTTACTATGGTGT+AGG | - | chr5.3:25462361-25462380 | None:intergenic | 20.0% |
| !!! | AAGTTTCTATTAAGATTTTG+AGG | - | chr5.3:25462201-25462220 | None:intergenic | 20.0% |
| !!! | ATGTCATTTTGTCAAATTTA+CGG | + | chr5.3:25463549-25463568 | MS.gene58555:intron | 20.0% |
| !!! | CTTTTTCTTGTTATTTGAAT+TGG | + | chr5.3:25462747-25462766 | MS.gene58555:intron | 20.0% |
| !!! | TAGCTATTTTAACAAGTTTA+AGG | - | chr5.3:25461995-25462014 | None:intergenic | 20.0% |
| ! | AACAGAAATGGAAGAAAAAT+TGG | - | chr5.3:25462573-25462592 | None:intergenic | 25.0% |
| ! | ATATGGTTCATCTATTTAAG+CGG | - | chr5.3:25463965-25463984 | None:intergenic | 25.0% |
| ! | ATCCAATACAAATCCAAATA+TGG | + | chr5.3:25465248-25465267 | MS.gene58555:intron | 25.0% |
| ! | ATCCTATAATATCAACACAA+AGG | - | chr5.3:25465812-25465831 | None:intergenic | 25.0% |
| ! | ATTATACATTGGAATCTCTA+AGG | + | chr5.3:25465272-25465291 | MS.gene58555:intron | 25.0% |
| ! | CATAATTCTCTGTAATATCA+AGG | - | chr5.3:25463173-25463192 | None:intergenic | 25.0% |
| ! | CCAAATATGGTATTATACAT+TGG | + | chr5.3:25465261-25465280 | MS.gene58555:intron | 25.0% |
| ! | CCAATGTATAATACCATATT+TGG | - | chr5.3:25465264-25465283 | None:intergenic | 25.0% |
| ! | CTTGATATTACAGAGAATTA+TGG | + | chr5.3:25463171-25463190 | MS.gene58555:intron | 25.0% |
| ! | GAATAAAGTTTAGGTAAGTT+AGG | - | chr5.3:25463337-25463356 | None:intergenic | 25.0% |
| ! | GATAAATCTTATTCTGTGTT+CGG | + | chr5.3:25465008-25465027 | MS.gene58555:intron | 25.0% |
| ! | GTCAGTTATGTTCATAAATT+AGG | + | chr5.3:25464960-25464979 | MS.gene58555:intron | 25.0% |
| ! | GTTATGTTCATAAATTAGGA+CGG | + | chr5.3:25464964-25464983 | MS.gene58555:intron | 25.0% |
| ! | TACCATATTTGGATTTGTAT+TGG | - | chr5.3:25465253-25465272 | None:intergenic | 25.0% |
| ! | TAGAAAAGAAAAGAGAATCA+TGG | + | chr5.3:25463367-25463386 | MS.gene58555:intron | 25.0% |
| ! | TTAATCTCTTCACATTTGAA+TGG | - | chr5.3:25464245-25464264 | None:intergenic | 25.0% |
| ! | TTATTAGCAATCTGTCAATA+GGG | + | chr5.3:25464793-25464812 | MS.gene58555:intron | 25.0% |
| ! | TTTATTAGCAATCTGTCAAT+AGG | + | chr5.3:25464792-25464811 | MS.gene58555:intron | 25.0% |
| !! | ATCTTTTAAATTGCTCGAAT+TGG | + | chr5.3:25463921-25463940 | MS.gene58555:intron | 25.0% |
| !! | ATGCTTTACAAAACTTCTTT+TGG | - | chr5.3:25463818-25463837 | None:intergenic | 25.0% |
| !! | TCTACTTTGGAAATTTCTAA+TGG | + | chr5.3:25464311-25464330 | MS.gene58555:CDS | 25.0% |
| !! | TCTTTGTTATATGTATGCTT+GGG | + | chr5.3:25464077-25464096 | MS.gene58555:intron | 25.0% |
| !! | TCTTTTAAATTGCTCGAATT+GGG | + | chr5.3:25463922-25463941 | MS.gene58555:intron | 25.0% |
| !! | TGGATTTTACTATGGTTTAA+TGG | - | chr5.3:25462307-25462326 | None:intergenic | 25.0% |
| !!! | ACAATTAAGGTTTTGAATAG+TGG | + | chr5.3:25463109-25463128 | MS.gene58555:intron | 25.0% |
| !!! | AGGTTGATGAAATATAGAAA+TGG | - | chr5.3:25462604-25462623 | None:intergenic | 25.0% |
| !!! | ATTGATTTTATGTCTACGTT+AGG | + | chr5.3:25464039-25464058 | MS.gene58555:intron | 25.0% |
| !!! | CATTGTTTTTCTTAAATTCC+CGG | - | chr5.3:25465488-25465507 | None:intergenic | 25.0% |
| !!! | CCACTTATAAACACTTTTTA+AGG | + | chr5.3:25465197-25465216 | MS.gene58555:intron | 25.0% |
| !!! | CCTTAAAAAGTGTTTATAAG+TGG | - | chr5.3:25465200-25465219 | None:intergenic | 25.0% |
| !!! | GTATTGTTATGTTAGTTTGT+TGG | + | chr5.3:25465423-25465442 | MS.gene58555:intron | 25.0% |
| !!! | TATGTTAGTTTGTTGGAATT+AGG | + | chr5.3:25465430-25465449 | MS.gene58555:intron | 25.0% |
| !!! | TGAATTCATTGCTTTTTCAT+CGG | - | chr5.3:25462541-25462560 | None:intergenic | 25.0% |
| !!! | TGTTAACTACAAGCTTTTTT+GGG | + | chr5.3:25464166-25464185 | MS.gene58555:intron | 25.0% |
| !!! | TTGTTAACTACAAGCTTTTT+TGG | + | chr5.3:25464165-25464184 | MS.gene58555:intron | 25.0% |
| AAAAAGAAGGGGTTTGAATT+TGG | + | chr5.3:25463081-25463100 | MS.gene58555:intron | 30.0% | |
| AAACAAAACCTCAGAAAACT+CGG | + | chr5.3:25464288-25464307 | MS.gene58555:CDS | 30.0% | |
| AAACCTCATTTAACGACAAA+CGG | - | chr5.3:25465881-25465900 | None:intergenic | 30.0% | |
| AAACGGGATGGATATTATTA+AGG | - | chr5.3:25465315-25465334 | None:intergenic | 30.0% | |
| AACCTTAAGGTGAATAAATC+GGG | - | chr5.3:25463029-25463048 | None:intergenic | 30.0% | |
| AAGAACTAACGAGATAAAGA+CGG | - | chr5.3:25465576-25465595 | None:intergenic | 30.0% | |
| AAGCCTTTGATAAGAAATGT+CGG | - | chr5.3:25463467-25463486 | None:intergenic | 30.0% | |
| ACTTGACCAGAAAAAAAGAA+GGG | + | chr5.3:25463069-25463088 | MS.gene58555:intron | 30.0% | |
| AGAGATTAAACATTCAACGA+AGG | + | chr5.3:25464256-25464275 | MS.gene58555:CDS | 30.0% | |
| AGTTTCAAAGAAAAACCTTC+AGG | + | chr5.3:25462822-25462841 | MS.gene58555:CDS | 30.0% | |
| ATAAGAAACAGAGAATGGTT+TGG | + | chr5.3:25462478-25462497 | MS.gene58555:intron | 30.0% | |
| ATGTATAGTACAAAGTGAGA+AGG | - | chr5.3:25464105-25464124 | None:intergenic | 30.0% | |
| CAACCTTAAGGTGAATAAAT+CGG | - | chr5.3:25463030-25463049 | None:intergenic | 30.0% | |
| CATATACCTGAGAAAAAAGA+AGG | + | chr5.3:25465977-25465996 | MS.gene58555:CDS | 30.0% | |
| CATATAGATGAACACGTTTA+TGG | + | chr5.3:25464347-25464366 | MS.gene58555:CDS | 30.0% | |
| CGGGAATTTAAGAAAAACAA+TGG | + | chr5.3:25465486-25465505 | MS.gene58555:intron | 30.0% | |
| CGTATTCCACATAATATACA+CGG | - | chr5.3:25465911-25465930 | None:intergenic | 30.0% | |
| CTTCACATTTGAATGGAATT+CGG | - | chr5.3:25464238-25464257 | None:intergenic | 30.0% | |
| GTAAGACACACAAAAACAAA+GGG | - | chr5.3:25463600-25463619 | None:intergenic | 30.0% | |
| TAAAGCAGAAAGTTAGATCA+TGG | - | chr5.3:25465401-25465420 | None:intergenic | 30.0% | |
| TAATATCAACACAAAGGTCA+AGG | - | chr5.3:25465806-25465825 | None:intergenic | 30.0% | |
| TATCAAAAACCGTTATGTTG+TGG | + | chr5.3:25463430-25463449 | MS.gene58555:intron | 30.0% | |
| TATTAGCAATCTGTCAATAG+GGG | + | chr5.3:25464794-25464813 | MS.gene58555:intron | 30.0% | |
| TGATCTAACTTTCTGCTTTA+TGG | + | chr5.3:25465401-25465420 | MS.gene58555:intron | 30.0% | |
| TGTAAGACACACAAAAACAA+AGG | - | chr5.3:25463601-25463620 | None:intergenic | 30.0% | |
| TGTTAACCGTGTATATTATG+TGG | + | chr5.3:25465902-25465921 | MS.gene58555:intron | 30.0% | |
| TTCGGAAAATTGAAGAAGTA+TGG | + | chr5.3:25465026-25465045 | MS.gene58555:intron | 30.0% | |
| TTGATTGAGAATAAGACTCA+TGG | - | chr5.3:25462143-25462162 | None:intergenic | 30.0% | |
| TTTGTTCATAGCTTTCTGTT+TGG | + | chr5.3:25465641-25465660 | MS.gene58555:intron | 30.0% | |
| ! | AAGATTCTGAAAATGGACAT+GGG | + | chr5.3:25462778-25462797 | MS.gene58555:CDS | 30.0% |
| ! | ACAAAACTTCTTTTGGATGA+GGG | - | chr5.3:25463811-25463830 | None:intergenic | 30.0% |
| ! | CTCTTTGTTATATGTATGCT+TGG | + | chr5.3:25464076-25464095 | MS.gene58555:intron | 30.0% |
| ! | GACCTTTGTGTTGATATTAT+AGG | + | chr5.3:25465807-25465826 | MS.gene58555:intron | 30.0% |
| ! | TACAAAACTTCTTTTGGATG+AGG | - | chr5.3:25463812-25463831 | None:intergenic | 30.0% |
| ! | TTTCTTATCAAAGGCTTGTT+TGG | + | chr5.3:25463470-25463489 | MS.gene58555:intron | 30.0% |
| !! | GTTTGGTTCTTTAAATCTCA+AGG | + | chr5.3:25464678-25464697 | MS.gene58555:intron | 30.0% |
| !!! | TCTTTTGCCTTGTTATTCAT+AGG | + | chr5.3:25464129-25464148 | MS.gene58555:intron | 30.0% |
| AAAGACTGAAACGCTTACAA+AGG | - | chr5.3:25463293-25463312 | None:intergenic | 35.0% | |
| AAAGAGGCCTATGAATAACA+AGG | - | chr5.3:25464139-25464158 | None:intergenic | 35.0% | |
| AAAGTAAGGTTACTTCCTGA+AGG | - | chr5.3:25462840-25462859 | None:intergenic | 35.0% | |
| AACCTCATTTAACGACAAAC+GGG | - | chr5.3:25465880-25465899 | None:intergenic | 35.0% | |
| AACTAATGTGTCCAACTTAG+AGG | + | chr5.3:25464625-25464644 | MS.gene58555:intron | 35.0% | |
| AAGTGTTTATAAGTGGTGTG+CGG | - | chr5.3:25465193-25465212 | None:intergenic | 35.0% | |
| AGCTTCTGAACTTGGTTTAA+TGG | + | chr5.3:25464555-25464574 | MS.gene58555:intron | 35.0% | |
| AGGCCATATATCATCCAATA+CGG | + | chr5.3:25465217-25465236 | MS.gene58555:intron | 35.0% | |
| ATAAATCGGGAAATTCAACC+TGG | - | chr5.3:25463016-25463035 | None:intergenic | 35.0% | |
| ATAAGAGTTCGTACACCATA+TGG | - | chr5.3:25465057-25465076 | None:intergenic | 35.0% | |
| ATACCTGAGAAAAAAGAAGG+CGG | + | chr5.3:25465980-25465999 | MS.gene58555:CDS | 35.0% | |
| ATCCCGTATTGGATGATATA+TGG | - | chr5.3:25465223-25465242 | None:intergenic | 35.0% | |
| ATGCAGATAAATGCAGCTTA+TGG | - | chr5.3:25464871-25464890 | None:intergenic | 35.0% | |
| ATGGCGAAGAATAACAGAAA+TGG | - | chr5.3:25462585-25462604 | None:intergenic | 35.0% | |
| ATTAGCAATCTGTCAATAGG+GGG | + | chr5.3:25464795-25464814 | MS.gene58555:intron | 35.0% | |
| ATTGAGAATAAGACTCATGG+AGG | - | chr5.3:25462140-25462159 | None:intergenic | 35.0% | |
| CAGAGAATTATGGCCAATAA+AGG | + | chr5.3:25463181-25463200 | MS.gene58555:intron | 35.0% | |
| CTACAAAGACCACAACATAA+CGG | - | chr5.3:25463442-25463461 | None:intergenic | 35.0% | |
| CTATTTAAGCGGTTTGATTG+TGG | - | chr5.3:25463954-25463973 | None:intergenic | 35.0% | |
| CTCAAGGAAGAATGTGTAAT+TGG | + | chr5.3:25464694-25464713 | MS.gene58555:intron | 35.0% | |
| CTGTGACTTATTATCTGAAG+CGG | - | chr5.3:25464420-25464439 | None:intergenic | 35.0% | |
| CTTGACCAGAAAAAAAGAAG+GGG | + | chr5.3:25463070-25463089 | MS.gene58555:intron | 35.0% | |
| GACTTGACCAGAAAAAAAGA+AGG | + | chr5.3:25463068-25463087 | MS.gene58555:intron | 35.0% | |
| GGTAAAGTTAGAAGAAGCAA+AGG | + | chr5.3:25464827-25464846 | MS.gene58555:intron | 35.0% | |
| TACATTGATATGAGTACGTG+CGG | - | chr5.3:25465529-25465548 | None:intergenic | 35.0% | |
| TATGTGGAATACGTTGTACA+GGG | + | chr5.3:25465918-25465937 | MS.gene58555:intron | 35.0% | |
| TCACACGCTTTCAAATTTCA+AGG | - | chr5.3:25465764-25465783 | None:intergenic | 35.0% | |
| TCTCCATACTCAAGATTTGA+GGG | - | chr5.3:25461965-25461984 | None:intergenic | 35.0% | |
| TGGCTAGAAATTCAACCTTA+AGG | - | chr5.3:25463042-25463061 | None:intergenic | 35.0% | |
| TTATGTGGAATACGTTGTAC+AGG | + | chr5.3:25465917-25465936 | MS.gene58555:intron | 35.0% | |
| TTCCCGATTTATTCACCTTA+AGG | + | chr5.3:25463024-25463043 | MS.gene58555:intron | 35.0% | |
| TTCTCCATACTCAAGATTTG+AGG | - | chr5.3:25461966-25461985 | None:intergenic | 35.0% | |
| ! | AAGGAGCACAATCAAAAGTA+AGG | - | chr5.3:25462854-25462873 | None:intergenic | 35.0% |
| ! | ATTTGAAGTGAACATCGAAC+TGG | + | chr5.3:25463875-25463894 | MS.gene58555:intron | 35.0% |
| ! | CTAACTCAACTTTTCGAAAC+CGG | + | chr5.3:25465152-25465171 | MS.gene58555:intron | 35.0% |
| ! | GAAGATTCTGAAAATGGACA+TGG | + | chr5.3:25462777-25462796 | MS.gene58555:CDS | 35.0% |
| ! | TAATATCCATCCCGTTTTAG+TGG | + | chr5.3:25465318-25465337 | MS.gene58555:intron | 35.0% |
| ! | TGTTTTTCTTAAATTCCCGG+TGG | - | chr5.3:25465485-25465504 | None:intergenic | 35.0% |
| ! | TTCAGCGAAGATTCTGAAAA+TGG | + | chr5.3:25462771-25462790 | MS.gene58555:intron | 35.0% |
| ! | TTTTGTGTGTCTTACACAAG+CGG | + | chr5.3:25463605-25463624 | MS.gene58555:intron | 35.0% |
| !! | AAGAATTACCTTGGTGCTTA+AGG | - | chr5.3:25464922-25464941 | None:intergenic | 35.0% |
| !! | CATTGATTAGCTTCTGAACT+TGG | + | chr5.3:25464547-25464566 | MS.gene58555:intron | 35.0% |
| !! | GAATTTGGCACTGACAATTA+AGG | + | chr5.3:25463096-25463115 | MS.gene58555:intron | 35.0% |
| !! | GAGAATGGTTTGGAGTATTT+TGG | + | chr5.3:25462488-25462507 | MS.gene58555:intron | 35.0% |
| !! | GTGATGTCAAAGTGTTGAAT+GGG | + | chr5.3:25463738-25463757 | MS.gene58555:intron | 35.0% |
| !! | TGATGTCAAAGTGTTGAATG+GGG | + | chr5.3:25463739-25463758 | MS.gene58555:intron | 35.0% |
| !! | TGTGATGTCAAAGTGTTGAA+TGG | + | chr5.3:25463737-25463756 | MS.gene58555:intron | 35.0% |
| !!! | CTTTTTTGGGTGGAGTTATA+GGG | + | chr5.3:25464179-25464198 | MS.gene58555:intron | 35.0% |
| !!! | TAACTACAAGCTTTTTTGGG+TGG | + | chr5.3:25464169-25464188 | MS.gene58555:intron | 35.0% |
| !!! | TCAAACCCCTTCTTTTTTTC+TGG | - | chr5.3:25463078-25463097 | None:intergenic | 35.0% |
| AAATATCGCTGTAGTGAGAC+AGG | + | chr5.3:25464209-25464228 | MS.gene58555:CDS | 40.0% | |
| AACCACAACAAGACTACGAT+CGG | - | chr5.3:25463403-25463422 | None:intergenic | 40.0% | |
| AACTTCTCTTCAGTATCTGC+AGG | - | chr5.3:25464470-25464489 | None:intergenic | 40.0% | |
| AATATCGCTGTAGTGAGACA+GGG | + | chr5.3:25464210-25464229 | MS.gene58555:CDS | 40.0% | |
| AATGTACCTGTAGTGCTTGA+GGG | + | chr5.3:25465543-25465562 | MS.gene58555:intron | 40.0% | |
| AATGTGAGGACTTCTTTGGT+GGG | + | chr5.3:25463254-25463273 | MS.gene58555:intron | 40.0% | |
| ACAAAAACAAAGGGCCAAAG+AGG | - | chr5.3:25463591-25463610 | None:intergenic | 40.0% | |
| ACAGTCACAGAGAACATTAC+TGG | + | chr5.3:25464385-25464404 | MS.gene58555:CDS | 40.0% | |
| ACATCGAACTGGTGAAATCT+TGG | + | chr5.3:25463886-25463905 | MS.gene58555:intron | 40.0% | |
| AGAGAGAGAAAGAGAGAGAT+TGG | - | chr5.3:25462660-25462679 | None:intergenic | 40.0% | |
| CAACCCTCAAATCTTGAGTA+TGG | + | chr5.3:25461959-25461978 | MS.gene58555:intron | 40.0% | |
| CAACCTTCAATACTCGCTTT+AGG | + | chr5.3:25462618-25462637 | MS.gene58555:intron | 40.0% | |
| CACAGCTTAATCCTCTAAGT+TGG | - | chr5.3:25464639-25464658 | None:intergenic | 40.0% | |
| CATCGAACTGGTGAAATCTT+GGG | + | chr5.3:25463887-25463906 | MS.gene58555:intron | 40.0% | |
| CCAAAGAGGATAGGTTACAA+AGG | - | chr5.3:25463577-25463596 | None:intergenic | 40.0% | |
| CCTTTGTAACCTATCCTCTT+TGG | + | chr5.3:25463574-25463593 | MS.gene58555:intron | 40.0% | |
| CGCTTCAGATAATAAGTCAC+AGG | + | chr5.3:25464418-25464437 | MS.gene58555:CDS | 40.0% | |
| GAAAGTTAGATCATGGAACC+AGG | - | chr5.3:25465394-25465413 | None:intergenic | 40.0% | |
| GAATTATGGCCAATAAAGGC+TGG | + | chr5.3:25463185-25463204 | MS.gene58555:intron | 40.0% | |
| GGCCATATATCATCCAATAC+GGG | + | chr5.3:25465218-25465237 | MS.gene58555:intron | 40.0% | |
| GGGTGCAATATTTATTGTCC+TGG | + | chr5.3:25465373-25465392 | MS.gene58555:intron | 40.0% | |
| TACCCGTTTGTCGTTAAATG+AGG | + | chr5.3:25465875-25465894 | MS.gene58555:intron | 40.0% | |
| TCAGAAAACTCGGTCTACTT+TGG | + | chr5.3:25464298-25464317 | MS.gene58555:CDS | 40.0% | |
| TCTGAAAATGGACATGGGTT+TGG | + | chr5.3:25462783-25462802 | MS.gene58555:CDS | 40.0% | |
| TTCTATAAGCTCGACTACTG+TGG | - | chr5.3:25464763-25464782 | None:intergenic | 40.0% | |
| TTGGATGAGAAATCCCGTAT+TGG | - | chr5.3:25465234-25465253 | None:intergenic | 40.0% | |
| TTTGTGTGTCTTACACAAGC+GGG | + | chr5.3:25463606-25463625 | MS.gene58555:intron | 40.0% | |
| ! | AAAGTAGACCGAGTTTTCTG+AGG | - | chr5.3:25464299-25464318 | None:intergenic | 40.0% |
| ! | AACCTTTTCAGAGTAGATGC+AGG | - | chr5.3:25462892-25462911 | None:intergenic | 40.0% |
| ! | ACCTTTTCAGAGTAGATGCA+GGG | - | chr5.3:25462891-25462910 | None:intergenic | 40.0% |
| ! | GCACCGACATTTCTTATCAA+AGG | + | chr5.3:25463461-25463480 | MS.gene58555:intron | 40.0% |
| ! | GCTTTTCGCAAGAATTACCT+TGG | - | chr5.3:25464931-25464950 | None:intergenic | 40.0% |
| ! | GTCTGCTGCTATTTAGTGTT+TGG | + | chr5.3:25464661-25464680 | MS.gene58555:intron | 40.0% |
| ! | TAGGACTACTAGTTCTCACA+GGG | + | chr5.3:25465449-25465468 | MS.gene58555:intron | 40.0% |
| ! | TTAGGACTACTAGTTCTCAC+AGG | + | chr5.3:25465448-25465467 | MS.gene58555:intron | 40.0% |
| ! | TTCTTTGGTGGGTGATTTGT+AGG | + | chr5.3:25463265-25463284 | MS.gene58555:intron | 40.0% |
| !! | AAAGTGTTGAATGGGGAATG+GGG | + | chr5.3:25463746-25463765 | MS.gene58555:intron | 40.0% |
| !! | ACTTTTGATTGTGCTCCTTC+TGG | + | chr5.3:25462855-25462874 | MS.gene58555:CDS | 40.0% |
| !! | AGGTTGAATTTCTAGCCACT+AGG | + | chr5.3:25463044-25463063 | MS.gene58555:intron | 40.0% |
| !! | CAAAGTGTTGAATGGGGAAT+GGG | + | chr5.3:25463745-25463764 | MS.gene58555:intron | 40.0% |
| !! | CTCTGTCAACTTGTTACAAG+AGG | + | chr5.3:25465680-25465699 | MS.gene58555:intron | 40.0% |
| !! | GGTTTGGAGTATTTTGGAGA+AGG | + | chr5.3:25462494-25462513 | MS.gene58555:intron | 40.0% |
| !! | TCAAAGTGTTGAATGGGGAA+TGG | + | chr5.3:25463744-25463763 | MS.gene58555:intron | 40.0% |
| !! | TGACCTAAAGCGAGTATTGA+AGG | - | chr5.3:25462624-25462643 | None:intergenic | 40.0% |
| !!! | AAGGTTTTGAATAGTGGTCG+CGG | + | chr5.3:25463115-25463134 | MS.gene58555:intron | 40.0% |
| !!! | GCTTTTTTGGGTGGAGTTAT+AGG | + | chr5.3:25464178-25464197 | MS.gene58555:intron | 40.0% |
| AACAAAGGGCCAAAGAGGAT+AGG | - | chr5.3:25463586-25463605 | None:intergenic | 45.0% | |
| AGAGTTCGTACACCATATGG+TGG | - | chr5.3:25465054-25465073 | None:intergenic | 45.0% | |
| AGGAAGGGTAGCCACTAAAA+CGG | - | chr5.3:25465332-25465351 | None:intergenic | 45.0% | |
| ATGTCTGGTTATGTTGCAGC+AGG | + | chr5.3:25466008-25466027 | MS.gene58555:CDS | 45.0% | |
| CAATGTACCTGTAGTGCTTG+AGG | + | chr5.3:25465542-25465561 | MS.gene58555:intron | 45.0% | |
| CAATGTGAGGACTTCTTTGG+TGG | + | chr5.3:25463253-25463272 | MS.gene58555:intron | 45.0% | |
| CACCAAAGAAGTCCTCACAT+TGG | - | chr5.3:25463255-25463274 | None:intergenic | 45.0% | |
| CCAACTAAGCCAGCCTTTAT+TGG | - | chr5.3:25463197-25463216 | None:intergenic | 45.0% | |
| CCATATTCAGTTCCGTTCCA+TGG | + | chr5.3:25463979-25463998 | MS.gene58555:intron | 45.0% | |
| CCATGGAACGGAACTGAATA+TGG | - | chr5.3:25463982-25464001 | None:intergenic | 45.0% | |
| CTGGTGAAATCTTGGGATCA+TGG | + | chr5.3:25463894-25463913 | MS.gene58555:intron | 45.0% | |
| GAAGAGAAGTTGTCAGTGCT+TGG | + | chr5.3:25464479-25464498 | MS.gene58555:CDS | 45.0% | |
| TGAATAGTGGTCGCGGTTTA+AGG | + | chr5.3:25463122-25463141 | MS.gene58555:intron | 45.0% | |
| TGCCAATGTGAGGACTTCTT+TGG | + | chr5.3:25463250-25463269 | MS.gene58555:intron | 45.0% | |
| TGCTGCAACATAACCAGACA+TGG | - | chr5.3:25466009-25466028 | None:intergenic | 45.0% | |
| TGGTTATGTTGCAGCAGGAA+GGG | + | chr5.3:25466013-25466032 | MS.gene58555:CDS | 45.0% | |
| TTAGGTAAGTTAGGCTCCGA+GGG | - | chr5.3:25463328-25463347 | None:intergenic | 45.0% | |
| TTGTGTGTCTTACACAAGCG+GGG | + | chr5.3:25463607-25463626 | MS.gene58555:intron | 45.0% | |
| TTTAGGTAAGTTAGGCTCCG+AGG | - | chr5.3:25463329-25463348 | None:intergenic | 45.0% | |
| ! | AGACCACGTCTTGAGAGTAT+AGG | + | chr5.3:25465090-25465109 | MS.gene58555:intron | 45.0% |
| ! | AGGACTACTAGTTCTCACAG+GGG | + | chr5.3:25465450-25465469 | MS.gene58555:intron | 45.0% |
| ! | GACCACGTCTTGAGAGTATA+GGG | + | chr5.3:25465091-25465110 | MS.gene58555:intron | 45.0% |
| ! | TCCCTGCATCTACTCTGAAA+AGG | + | chr5.3:25462887-25462906 | MS.gene58555:CDS | 45.0% |
| !! | AGAAGTATGGTGCCACCATA+TGG | + | chr5.3:25465039-25465058 | MS.gene58555:intron | 45.0% |
| !! | CCAATAAAGGCTGGCTTAGT+TGG | + | chr5.3:25463194-25463213 | MS.gene58555:intron | 45.0% |
| !! | CTTTTCGAAACCGGCTTAGA+AGG | + | chr5.3:25465161-25465180 | MS.gene58555:intron | 45.0% |
| !!! | GTTGTCAGTGCTTGGTTTTG+AGG | + | chr5.3:25464487-25464506 | MS.gene58555:CDS | 45.0% |
| !!! | AAAAAAAAATTATTGATTTT+AGG | + | chr5.3:25463653-25463672 | MS.gene58555:intron | 5.0% |
| !!! | AAAAAAAAATTATTTTACTA+TGG | - | chr5.3:25462367-25462386 | None:intergenic | 5.0% |
| AGAAGTCCTCACATTGGCAG+CGG | - | chr5.3:25463249-25463268 | None:intergenic | 50.0% | |
| CAACCTGTCGAACCATGGAA+CGG | - | chr5.3:25463994-25464013 | None:intergenic | 50.0% | |
| CAGTTCAACCTGTCGAACCA+TGG | - | chr5.3:25463999-25464018 | None:intergenic | 50.0% | |
| CCTTCAGGGTCGTAAAGACA+CGG | + | chr5.3:25465352-25465371 | MS.gene58555:intron | 50.0% | |
| CTGGTTATGTTGCAGCAGGA+AGG | + | chr5.3:25466012-25466031 | MS.gene58555:CDS | 50.0% | |
| CTTCAGGGTCGTAAAGACAC+GGG | + | chr5.3:25465353-25465372 | MS.gene58555:intron | 50.0% | |
| GAAGGGGTCAGACAAACTCT+CGG | + | chr5.3:25466030-25466049 | MS.gene58555:CDS | 50.0% | |
| GAGTAGATGCAGGGAACACA+AGG | - | chr5.3:25462882-25462901 | None:intergenic | 50.0% | |
| GGAAGGGTAGCCACTAAAAC+GGG | - | chr5.3:25465331-25465350 | None:intergenic | 50.0% | |
| GGAGTTGACACACCCACAAT+CGG | + | chr5.3:25463215-25463234 | MS.gene58555:intron | 50.0% | |
| GGTTATGTTGCAGCAGGAAG+GGG | + | chr5.3:25466014-25466033 | MS.gene58555:CDS | 50.0% | |
| GTCAATAGGGGGATGTCTGT+TGG | + | chr5.3:25464806-25464825 | MS.gene58555:intron | 50.0% | |
| GTCATGAGCCTTAAGCACCA+AGG | + | chr5.3:25464911-25464930 | MS.gene58555:intron | 50.0% | |
| GTCCCTATACTCTCAAGACG+TGG | - | chr5.3:25465096-25465115 | None:intergenic | 50.0% | |
| TCCTGTGAGCATAGCACAGT+TGG | + | chr5.3:25462984-25463003 | MS.gene58555:intron | 50.0% | |
| TGTCTTTACGACCCTGAAGG+AGG | - | chr5.3:25465352-25465371 | None:intergenic | 50.0% | |
| TTACGACCCTGAAGGAGGAA+GGG | - | chr5.3:25465347-25465366 | None:intergenic | 50.0% | |
| TTTACGACCCTGAAGGAGGA+AGG | - | chr5.3:25465348-25465367 | None:intergenic | 50.0% | |
| ! | ACAGGGGCTTTAATCTCCAC+CGG | + | chr5.3:25465466-25465485 | MS.gene58555:intron | 50.0% |
| ! | GTTCGACAGGTTGAACTGTC+TGG | + | chr5.3:25464001-25464020 | MS.gene58555:intron | 50.0% |
| ! | TTTCTGGTCAAGTCGCCTAG+TGG | - | chr5.3:25463062-25463081 | None:intergenic | 50.0% |
| !! | AGCCGATCGTAGTCTTGTTG+TGG | + | chr5.3:25463398-25463417 | MS.gene58555:intron | 50.0% |
| !!! | CAGCCGCCTTCTTTTTTCTC+AGG | - | chr5.3:25465986-25466005 | None:intergenic | 50.0% |
| AGCGAACCCTCAAGCACTAC+AGG | - | chr5.3:25465552-25465571 | None:intergenic | 55.0% | |
| AGCGGGAGTTAGACCGATTG+TGG | - | chr5.3:25463231-25463250 | None:intergenic | 55.0% | |
| CAGGGAACACAAGGACCAGA+AGG | - | chr5.3:25462873-25462892 | None:intergenic | 55.0% | |
| CCGTGTCTTTACGACCCTGA+AGG | - | chr5.3:25465355-25465374 | None:intergenic | 55.0% | |
| CTTTGAGCCCAGTGAACCCT+CGG | + | chr5.3:25463309-25463328 | MS.gene58555:intron | 55.0% | |
| GAAGTCCTCACATTGGCAGC+GGG | - | chr5.3:25463248-25463267 | None:intergenic | 55.0% | |
| GCCAACTGTGCTATGCTCAC+AGG | - | chr5.3:25462988-25463007 | None:intergenic | 55.0% | |
| GCGGGAGTTAGACCGATTGT+GGG | - | chr5.3:25463230-25463249 | None:intergenic | 55.0% | |
| GGGTAGCCACTAAAACGGGA+TGG | - | chr5.3:25465327-25465346 | None:intergenic | 55.0% | |
| GTTCCGTTCCATGGTTCGAC+AGG | + | chr5.3:25463988-25464007 | MS.gene58555:intron | 55.0% | |
| TAACTCCCGCTGCCAATGTG+AGG | + | chr5.3:25463240-25463259 | MS.gene58555:intron | 55.0% | |
| TAGCACAGTTGGCAACGACC+AGG | + | chr5.3:25462995-25463014 | MS.gene58555:intron | 55.0% | |
| TGGCTACCCTTCCTCCTTCA+GGG | + | chr5.3:25465338-25465357 | MS.gene58555:intron | 55.0% | |
| TTAGGCTCCGAGGGTTCACT+GGG | - | chr5.3:25463319-25463338 | None:intergenic | 55.0% | |
| ! | CAGGGGCTTTAATCTCCACC+GGG | + | chr5.3:25465467-25465486 | MS.gene58555:intron | 55.0% |
| AAGAAGGCGGCTGCCATGTC+TGG | + | chr5.3:25465993-25466012 | MS.gene58555:CDS | 60.0% | |
| GCGGTCGTCACCTTCTAAGC+CGG | - | chr5.3:25465174-25465193 | None:intergenic | 60.0% | |
| GTGGCTACCCTTCCTCCTTC+AGG | + | chr5.3:25465337-25465356 | MS.gene58555:intron | 60.0% | |
| GTTAGGCTCCGAGGGTTCAC+TGG | - | chr5.3:25463320-25463339 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 25461950 | 25466058 | 25461950 | ID=MS.gene58555 |
| chr5.3 | mRNA | 25461950 | 25466058 | 25461950 | ID=MS.gene58555.t1;Parent=MS.gene58555 |
| chr5.3 | exon | 25461950 | 25461975 | 25461950 | ID=MS.gene58555.t1.exon1;Parent=MS.gene58555.t1 |
| chr5.3 | CDS | 25461950 | 25461975 | 25461950 | ID=cds.MS.gene58555.t1;Parent=MS.gene58555.t1 |
| chr5.3 | exon | 25462776 | 25462908 | 25462776 | ID=MS.gene58555.t1.exon2;Parent=MS.gene58555.t1 |
| chr5.3 | CDS | 25462776 | 25462908 | 25462776 | ID=cds.MS.gene58555.t1;Parent=MS.gene58555.t1 |
| chr5.3 | exon | 25464200 | 25464508 | 25464200 | ID=MS.gene58555.t1.exon3;Parent=MS.gene58555.t1 |
| chr5.3 | CDS | 25464200 | 25464508 | 25464200 | ID=cds.MS.gene58555.t1;Parent=MS.gene58555.t1 |
| chr5.3 | exon | 25465939 | 25466058 | 25465939 | ID=MS.gene58555.t1.exon4;Parent=MS.gene58555.t1 |
| chr5.3 | CDS | 25465939 | 25466058 | 25465939 | ID=cds.MS.gene58555.t1;Parent=MS.gene58555.t1 |
| Gene Sequence |
| Protein sequence |
