AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055313


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055313.t1 MTR_3g097570 97.149 456 12 1 1 456 1 455 0.0 915
MS.gene055313.t1 MTR_8g446550 42.654 211 111 2 107 316 321 522 8.17e-45 166
MS.gene055313.t1 MTR_7g105920 46.354 192 95 4 108 292 265 455 2.54e-43 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055313.t1 AT5G23610 37.736 371 199 6 108 452 124 488 3.95e-77 249
MS.gene055313.t1 AT5G23610 37.634 372 199 6 108 452 124 489 5.58e-77 249
MS.gene055313.t1 AT5G51330 43.842 203 97 2 107 292 290 492 4.61e-45 166
MS.gene055313.t1 AT5G51330 43.842 203 97 2 107 292 294 496 5.16e-45 166

Find 132 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGCAGGAGATGTTTA+TGG 0.210272 3.2:+81335897 MS.gene055313:intron
CAACTCGTTGATAATGTTTC+AGG 0.243745 3.2:+81335795 MS.gene055313:CDS
TTACTATCTGGAAAATATAT+TGG 0.261036 3.2:-81334154 None:intergenic
AAGTTCAGTACTTCTTCATT+TGG 0.283704 3.2:-81334839 None:intergenic
CTTAGTACAGGTCGGGTTAT+TGG 0.284312 3.2:-81334531 None:intergenic
CGTAAATACATCGGTGATAC+TGG 0.287030 3.2:+81334564 MS.gene055313:CDS
TCCCTCCAGGTGCCACTTTA+CGG 0.303889 3.2:-81334617 None:intergenic
GTTCAACCCTGACGGAATTA+TGG 0.307173 3.2:+81334659 MS.gene055313:CDS
CAGTATCACCGATGTATTTA+CGG 0.324775 3.2:-81334563 None:intergenic
GATGACGTCCGCGAGGAGGC+TGG 0.343634 3.2:+81334708 MS.gene055313:CDS
CATCGTCAACAGGCATTCAT+TGG 0.346643 3.2:+81334046 MS.gene055313:CDS
TGAAGTGGAGCAACATCTTA+TGG 0.347796 3.2:+81335306 MS.gene055313:CDS
GTATATTAACAGGGCAAGTA+TGG 0.358640 3.2:+81335262 MS.gene055313:intron
GGATACCACCATCCACTGTT+AGG 0.358688 3.2:+81334748 MS.gene055313:CDS
TTAACAGTTGTAGAAGAATC+TGG 0.359007 3.2:-81335754 None:intergenic
TCTTCATTGAGTGGCTGAAT+TGG 0.364573 3.2:-81335529 None:intergenic
CCGTCATCCTGAGTATTGTC+TGG 0.369164 3.2:-81335427 None:intergenic
GGTTGATCCTCTTGCATTGT+GGG 0.373824 3.2:-81335721 None:intergenic
GTGGATGGTGGTATCCAATA+GGG 0.379280 3.2:-81334741 None:intergenic
TTAGTACAGGTCGGGTTATT+GGG 0.379451 3.2:-81334530 None:intergenic
CTGGGGTTGATGACCCCTAT+TGG 0.380387 3.2:+81334727 MS.gene055313:CDS
AGTTCAGTACTTCTTCATTT+GGG 0.387011 3.2:-81334838 None:intergenic
GGCCATCCGTGCCCCTTGTC+AGG 0.402712 3.2:+81334770 MS.gene055313:CDS
GGATTCTTTGAAGAATTTGC+AGG 0.406927 3.2:+81335140 MS.gene055313:CDS
GAAGAATCTGGGGTGACATT+AGG 0.411888 3.2:-81335742 None:intergenic
GATGTATCAAACACTGTATA+TGG 0.414656 3.2:+81335961 MS.gene055313:CDS
ATTCAAATGGAAAGAAAAGA+TGG 0.422345 3.2:+81335924 MS.gene055313:CDS
CGTCAGGGTTGAACCATCTT+CGG 0.426408 3.2:-81334650 None:intergenic
AGTGGATGGTGGTATCCAAT+AGG 0.428009 3.2:-81334742 None:intergenic
AGTATGGTGAGTTCGCGATA+TGG 0.430148 3.2:+81335278 MS.gene055313:CDS
GAGAAAGAAGCATGACAGTA+AGG 0.439317 3.2:+81334324 MS.gene055313:CDS
GAAACTGCTTAAAATAGAAA+TGG 0.441793 3.2:+81334815 MS.gene055313:CDS
AGGATGACGGATTGGCAACT+TGG 0.448641 3.2:+81335440 MS.gene055313:CDS
TGTTTATGGATTTATTCAAA+TGG 0.448971 3.2:+81335911 MS.gene055313:CDS
AGCTGCAGGGATGGATAGGT+GGG 0.450023 3.2:+81334018 None:intergenic
CGGAATTATGGAGTATTGGT+TGG 0.461416 3.2:+81334671 MS.gene055313:CDS
TTTGGATAGCAGAGATATGC+AGG 0.462744 3.2:+81334923 MS.gene055313:intron
CTGACGGAATTATGGAGTAT+TGG 0.463406 3.2:+81334667 MS.gene055313:CDS
GTGGGAGGTGCTGAAGGCAG+AGG 0.464284 3.2:+81334491 MS.gene055313:CDS
ATGACGTCCGCGAGGAGGCT+GGG 0.464713 3.2:+81334709 MS.gene055313:CDS
CAATACTCCATAATTCCGTC+AGG 0.466213 3.2:-81334666 None:intergenic
CTAAAAGTGGTGCACTCTCT+TGG 0.466483 3.2:-81335361 None:intergenic
CAACCGCCTAACTGAAATCA+TGG 0.467995 3.2:+81335119 MS.gene055313:CDS
GTGGGGTGTTCATCGTCAAC+AGG 0.476341 3.2:+81334036 MS.gene055313:CDS
ACCTCAATAAGCTGACCATA+AGG 0.476397 3.2:-81334259 None:intergenic
AGTATCACCGATGTATTTAC+GGG 0.476913 3.2:-81334562 None:intergenic
GAGCTGCAGGGATGGATAGG+TGG 0.485530 3.2:+81334017 None:intergenic
AAGAATCCATGATTTCAGTT+AGG 0.487830 3.2:-81335125 None:intergenic
TGGGAGGTGCTGAAGGCAGA+GGG 0.492323 3.2:+81334492 MS.gene055313:CDS
TAACAGTTGTAGAAGAATCT+GGG 0.496287 3.2:-81335753 None:intergenic
AGCTGATCTTAGTACAGGTC+GGG 0.496477 3.2:-81334538 None:intergenic
AGCATGACAGTAAGGATAGA+TGG 0.497539 3.2:+81334332 MS.gene055313:CDS
GGACTGATCGGTTCCGAAGA+TGG 0.500965 3.2:+81334637 MS.gene055313:CDS
GCCTTATGGTCAGCTTATTG+AGG 0.505640 3.2:+81334258 MS.gene055313:CDS
TGACGTCCGCGAGGAGGCTG+GGG 0.505696 3.2:+81334710 MS.gene055313:CDS
AGGTTGATCCTCTTGCATTG+TGG 0.510835 3.2:-81335722 None:intergenic
TTGGTTGGAGAGGGCTGACT+TGG 0.513352 3.2:+81334686 MS.gene055313:CDS
ATCCTGACAAGGGGCACGGA+TGG 0.514234 3.2:-81334772 None:intergenic
TTAGTCAGTTCTTCATTGAG+TGG 0.514458 3.2:-81335538 None:intergenic
GAGGTGAAAGAGGAGTATGC+TGG 0.516120 3.2:+81334277 MS.gene055313:CDS
GAAGAATCAGCATCCTGACA+AGG 0.520021 3.2:-81334783 None:intergenic
TTAGAGCTGCAGGGATGGAT+AGG 0.521038 3.2:+81334014 None:intergenic
GTCAACAGGCATTCATTGGT+TGG 0.523113 3.2:+81334050 MS.gene055313:CDS
TTCTGTTACTAGGAAGGAAG+AGG 0.524484 3.2:+81334090 MS.gene055313:CDS
GACGGATTGGCAACTTGGAT+AGG 0.527728 3.2:+81335445 MS.gene055313:CDS
CTGAATTGGCATGCCTGAGT+AGG 0.528503 3.2:-81335515 None:intergenic
TTCTACAACTGTTAATTCAA+AGG 0.528922 3.2:+81335762 MS.gene055313:CDS
GGTCAATGTGCTTCAGTAAG+TGG 0.534563 3.2:-81334596 None:intergenic
CGGGCAGCTGATCTTAGTAC+AGG 0.536563 3.2:-81334543 None:intergenic
GAAGCTTAGAGAGGTGAAAG+AGG 0.537563 3.2:+81334234 MS.gene055313:CDS
TTGAAATAATAGTCATGTTG+AGG 0.537928 3.2:+81335690 MS.gene055313:intron
CAGCTGATCTTAGTACAGGT+CGG 0.541011 3.2:-81334539 None:intergenic
ACGGATTGGCAACTTGGATA+GGG 0.541184 3.2:+81335446 MS.gene055313:CDS
AAGCATGTGGGAGGTGCTGA+AGG 0.543073 3.2:+81334485 MS.gene055313:CDS
TTTCTTGAAGATCCCTACTC+AGG 0.547860 3.2:+81335502 MS.gene055313:CDS
TCACCTCTCTAAGCTGACTA+AGG 0.547878 3.2:-81334195 None:intergenic
AAAGATGGAGCAGCAGCTGT+TGG 0.548685 3.2:+81335939 MS.gene055313:CDS
TTCTGAAGGAGGACTAAAAG+TGG 0.548840 3.2:-81335374 None:intergenic
GATACCACCATCCACTGTTA+GGG 0.550025 3.2:+81334749 MS.gene055313:CDS
GAAAACTGAAAGTAACATGA+TGG 0.552332 3.2:+81334968 MS.gene055313:CDS
GGAGGTGCTGAAGGCAGAGG+GGG 0.552568 3.2:+81334494 MS.gene055313:CDS
TATGGAGTATTGGTTGGAGA+GGG 0.553818 3.2:+81334677 MS.gene055313:CDS
AGGTGAAAGAGGAGTATGCT+GGG 0.555325 3.2:+81334278 MS.gene055313:CDS
CGGAACCGATCAGTCCCTCC+AGG 0.556285 3.2:-81334630 None:intergenic
CTCTAAGCTGACTAAGGCTG+AGG 0.562519 3.2:-81334189 None:intergenic
GCAGGAGCTCATTGCCCAGA+AGG 0.562853 3.2:+81334941 MS.gene055313:CDS
AAGAACTGACTAACAAGAAG+AGG 0.565105 3.2:+81335548 MS.gene055313:CDS
GAAGCACATTGACCGTAAAG+TGG 0.570384 3.2:+81334605 MS.gene055313:CDS
TGAATTGGCATGCCTGAGTA+GGG 0.572022 3.2:-81335514 None:intergenic
CGCGATATGGAAAACTGAAG+TGG 0.573314 3.2:+81335291 MS.gene055313:CDS
TCAGCTTATTGAGGTGAAAG+AGG 0.574832 3.2:+81334267 MS.gene055313:CDS
AATCCATGATTTCAGTTAGG+CGG 0.575656 3.2:-81335122 None:intergenic
TGGCACCTGGAGGGACTGAT+CGG 0.577271 3.2:+81334625 MS.gene055313:CDS
CGTCATCCTGAGTATTGTCT+GGG 0.578265 3.2:-81335426 None:intergenic
CGAAGATGGTTCAACCCTGA+CGG 0.579824 3.2:+81334651 MS.gene055313:CDS
TACTAGGAAGGAAGAGGACT+CGG 0.580045 3.2:+81334096 MS.gene055313:CDS
CTTGGATGACGTCCGCGAGG+AGG 0.584682 3.2:+81334704 MS.gene055313:CDS
CAGCATCCTGACAAGGGGCA+CGG 0.588448 3.2:-81334776 None:intergenic
CAATACTCAGGATGACGGAT+TGG 0.588917 3.2:+81335432 MS.gene055313:CDS
CGGATGGCCCTAACAGTGGA+TGG 0.589422 3.2:-81334756 None:intergenic
CTTGCAAGGAACTTATGAAG+TGG 0.591648 3.2:+81335082 MS.gene055313:CDS
TCTTCAAGAAAACACTCTTG+TGG 0.592785 3.2:-81335490 None:intergenic
TCTTCCTTCCTAGTAACAGA+AGG 0.594292 3.2:-81334088 None:intergenic
TTATGGAGTATTGGTTGGAG+AGG 0.594798 3.2:+81334676 MS.gene055313:CDS
ACCGTAAAGTGGCACCTGGA+GGG 0.600671 3.2:+81334616 MS.gene055313:CDS
GAGGTGAAAGAGGAGCCTTA+TGG 0.602537 3.2:+81334244 MS.gene055313:CDS
AGGATAGATGGTCAAGCGAG+AGG 0.602598 3.2:+81334344 MS.gene055313:CDS
CAGCCTTAGTCAGCTTAGAG+AGG 0.603304 3.2:+81334192 MS.gene055313:CDS
CACTAACCCAGACAATACTC+AGG 0.613204 3.2:+81335420 MS.gene055313:CDS
AAGAATCAGCATCCTGACAA+GGG 0.613306 3.2:-81334782 None:intergenic
GGCACGGATGGCCCTAACAG+TGG 0.626312 3.2:-81334760 None:intergenic
ATTGACCGTAAAGTGGCACC+TGG 0.626391 3.2:+81334612 MS.gene055313:CDS
GCTGATACCCACAATGCAAG+AGG 0.632260 3.2:+81335714 MS.gene055313:CDS
ACTCTAATGTAGGTACAAGT+CGG 0.634040 3.2:+81334455 MS.gene055313:intron
CCAGACAATACTCAGGATGA+CGG 0.639358 3.2:+81335427 MS.gene055313:CDS
AACAGTTGTAGAAGAATCTG+GGG 0.639407 3.2:-81335752 None:intergenic
TGGATGGTGGTATCCAATAG+GGG 0.643639 3.2:-81334740 None:intergenic
AGTCGGCTGAACAAAGCATG+TGG 0.643899 3.2:+81334472 MS.gene055313:CDS
GTCGGCTGAACAAAGCATGT+GGG 0.649689 3.2:+81334473 MS.gene055313:CDS
GTCTTGTGAGAAGCTTAGAG+AGG 0.651620 3.2:+81334225 MS.gene055313:CDS
GGCTGAACAAAGCATGTGGG+AGG 0.654214 3.2:+81334476 MS.gene055313:CDS
AACTGAAAGTAACATGATGG+AGG 0.656525 3.2:+81334971 MS.gene055313:CDS
TCAGCTGCCCGTAAATACAT+CGG 0.660244 3.2:+81334555 MS.gene055313:CDS
CATCAACCCCAGCCTCCTCG+CGG 0.661718 3.2:-81334716 None:intergenic
AGAATCAGCATCCTGACAAG+GGG 0.662008 3.2:-81334781 None:intergenic
GGGAGGTGCTGAAGGCAGAG+GGG 0.662463 3.2:+81334493 MS.gene055313:CDS
GACCGTAAAGTGGCACCTGG+AGG 0.665408 3.2:+81334615 MS.gene055313:CDS
AATACTCCATAATTCCGTCA+GGG 0.681790 3.2:-81334665 None:intergenic
TCAATGGCAGAAGACTTGCA+AGG 0.688837 3.2:+81335068 MS.gene055313:intron
GCTGCAGGGATGGATAGGTG+GGG 0.693071 3.2:+81334019 None:intergenic
ATGGCCCTAACAGTGGATGG+TGG 0.700088 3.2:-81334753 None:intergenic
TGACTTGGATGACGTCCGCG+AGG 0.712793 3.2:+81334701 MS.gene055313:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCTAATAATTTTATT+TGG + chr3.2:81334905-81334924 MS.gene055313:intron 10.0%
!! ATTAACTCTATATAATTACT+TGG - chr3.2:81334430-81334449 None:intergenic 15.0%
!! GTATATATTCAAGATTTAAT+GGG + chr3.2:81335162-81335181 MS.gene055313:intron 15.0%
!!! TGAATGCTTTAATATTTTAA+TGG + chr3.2:81335001-81335020 MS.gene055313:intron 15.0%
!! AATAGATCATGAATATAAGA+AGG - chr3.2:81335874-81335893 None:intergenic 20.0%
!! GCTATCCAAATAAAATTATT+AGG - chr3.2:81334913-81334932 None:intergenic 20.0%
!! GGTATATATTCAAGATTTAA+TGG + chr3.2:81335161-81335180 MS.gene055313:intron 20.0%
!! TGTTTATGGATTTATTCAAA+TGG + chr3.2:81335911-81335930 MS.gene055313:CDS 20.0%
!! TTACTATCTGGAAAATATAT+TGG - chr3.2:81334157-81334176 None:intergenic 20.0%
!!! AAATTAACTTTTTTCCTTCT+TGG - chr3.2:81335646-81335665 None:intergenic 20.0%
! AACTCTATATAATTACTTGG+TGG - chr3.2:81334427-81334446 None:intergenic 25.0%
! ATTCAAATGGAAAGAAAAGA+TGG + chr3.2:81335924-81335943 MS.gene055313:CDS 25.0%
! CAACATGACTATTATTTCAA+AGG - chr3.2:81335690-81335709 None:intergenic 25.0%
! GAAACTGCTTAAAATAGAAA+TGG + chr3.2:81334815-81334834 MS.gene055313:CDS 25.0%
! TGCTTTATGTTGAATTTCAA+TGG + chr3.2:81335052-81335071 MS.gene055313:intron 25.0%
! TTCTACAACTGTTAATTCAA+AGG + chr3.2:81335762-81335781 MS.gene055313:CDS 25.0%
! TTGAAATAATAGTCATGTTG+AGG + chr3.2:81335690-81335709 MS.gene055313:intron 25.0%
!! ATTTTCCAGATAGTAAGAAA+AGG + chr3.2:81334161-81334180 MS.gene055313:CDS 25.0%
!!! TGATCTATTATTTTTCTTGC+AGG + chr3.2:81335885-81335904 MS.gene055313:intron 25.0%
AAGAATCCATGATTTCAGTT+AGG - chr3.2:81335128-81335147 None:intergenic 30.0%
AAGGAAAAAATGGGAATAAG+TGG - chr3.2:81335845-81335864 None:intergenic 30.0%
AAGTTCAGTACTTCTTCATT+TGG - chr3.2:81334842-81334861 None:intergenic 30.0%
AGATCATGAATATAAGAAGG+TGG - chr3.2:81335871-81335890 None:intergenic 30.0%
AGTTCAGTACTTCTTCATTT+GGG - chr3.2:81334841-81334860 None:intergenic 30.0%
CCTGTTAATATACAGAACTA+CGG - chr3.2:81335255-81335274 None:intergenic 30.0%
CTTCAGAAAAATGGAAAGAT+TGG + chr3.2:81335389-81335408 MS.gene055313:CDS 30.0%
GAAAACTGAAAGTAACATGA+TGG + chr3.2:81334968-81334987 MS.gene055313:CDS 30.0%
GATGTATCAAACACTGTATA+TGG + chr3.2:81335961-81335980 MS.gene055313:CDS 30.0%
GGAGAAATCAAACAAACAAA+AGG - chr3.2:81335211-81335230 None:intergenic 30.0%
TAACAGTTGTAGAAGAATCT+GGG - chr3.2:81335756-81335775 None:intergenic 30.0%
TAAGTCAGATATCACATAAG+TGG - chr3.2:81335232-81335251 None:intergenic 30.0%
TTAACAGTTGTAGAAGAATC+TGG - chr3.2:81335757-81335776 None:intergenic 30.0%
TTAATCATGCACTCTAATGT+AGG + chr3.2:81334445-81334464 MS.gene055313:intron 30.0%
! CGTAGTTCTGTATATTAACA+GGG + chr3.2:81335253-81335272 MS.gene055313:intron 30.0%
! TTCAGTTTTCTTTTCCTTCT+GGG - chr3.2:81334958-81334977 None:intergenic 30.0%
! TTTCAGTTTTCTTTTCCTTC+TGG - chr3.2:81334959-81334978 None:intergenic 30.0%
!! CAATCTTTCCATTTTTCTGA+AGG - chr3.2:81335391-81335410 None:intergenic 30.0%
AACAGTTGTAGAAGAATCTG+GGG - chr3.2:81335755-81335774 None:intergenic 35.0%
AACTGAAAGTAACATGATGG+AGG + chr3.2:81334971-81334990 MS.gene055313:CDS 35.0%
AAGAACTGACTAACAAGAAG+AGG + chr3.2:81335548-81335567 MS.gene055313:CDS 35.0%
AAGGTGGTAGAAGGAAAAAA+TGG - chr3.2:81335855-81335874 None:intergenic 35.0%
AATACTCCATAATTCCGTCA+GGG - chr3.2:81334668-81334687 None:intergenic 35.0%
AATCCATGATTTCAGTTAGG+CGG - chr3.2:81335125-81335144 None:intergenic 35.0%
ACTCTAATGTAGGTACAAGT+CGG + chr3.2:81334455-81334474 MS.gene055313:intron 35.0%
AGGTGGTAGAAGGAAAAAAT+GGG - chr3.2:81335854-81335873 None:intergenic 35.0%
AGTATCACCGATGTATTTAC+GGG - chr3.2:81334565-81334584 None:intergenic 35.0%
CAGTATCACCGATGTATTTA+CGG - chr3.2:81334566-81334585 None:intergenic 35.0%
GAATATAAGAAGGTGGTAGA+AGG - chr3.2:81335864-81335883 None:intergenic 35.0%
GTATATTAACAGGGCAAGTA+TGG + chr3.2:81335262-81335281 MS.gene055313:intron 35.0%
TCTTCAAGAAAACACTCTTG+TGG - chr3.2:81335493-81335512 None:intergenic 35.0%
TTAGTCAGTTCTTCATTGAG+TGG - chr3.2:81335541-81335560 None:intergenic 35.0%
TTAGTCCTCCTTCAGAAAAA+TGG + chr3.2:81335380-81335399 MS.gene055313:CDS 35.0%
TTTCTTGCAGGAGATGTTTA+TGG + chr3.2:81335897-81335916 MS.gene055313:intron 35.0%
! CCGTAGTTCTGTATATTAAC+AGG + chr3.2:81335252-81335271 MS.gene055313:intron 35.0%
! GGATTCTTTGAAGAATTTGC+AGG + chr3.2:81335140-81335159 MS.gene055313:CDS 35.0%
! GTTCTTTTCCTTCTGTTACT+AGG + chr3.2:81334080-81334099 MS.gene055313:CDS 35.0%
! TTTTCCTTCTGTTACTAGGA+AGG + chr3.2:81334084-81334103 MS.gene055313:CDS 35.0%
!! CAACTCGTTGATAATGTTTC+AGG + chr3.2:81335795-81335814 MS.gene055313:CDS 35.0%
!! TCTTTCCATTTTTCTGAAGG+AGG - chr3.2:81335388-81335407 None:intergenic 35.0%
AAGAATCAGCATCCTGACAA+GGG - chr3.2:81334785-81334804 None:intergenic 40.0%
ACCTCAATAAGCTGACCATA+AGG - chr3.2:81334262-81334281 None:intergenic 40.0%
AGCATGACAGTAAGGATAGA+TGG + chr3.2:81334332-81334351 MS.gene055313:CDS 40.0%
CAATACTCCATAATTCCGTC+AGG - chr3.2:81334669-81334688 None:intergenic 40.0%
CGTAAATACATCGGTGATAC+TGG + chr3.2:81334564-81334583 MS.gene055313:CDS 40.0%
CTGACGGAATTATGGAGTAT+TGG + chr3.2:81334667-81334686 MS.gene055313:CDS 40.0%
CTTGCAAGGAACTTATGAAG+TGG + chr3.2:81335082-81335101 MS.gene055313:CDS 40.0%
TCAGCTTATTGAGGTGAAAG+AGG + chr3.2:81334267-81334286 MS.gene055313:CDS 40.0%
TCTTCATTGAGTGGCTGAAT+TGG - chr3.2:81335532-81335551 None:intergenic 40.0%
TCTTCCTTCCTAGTAACAGA+AGG - chr3.2:81334091-81334110 None:intergenic 40.0%
TGAAGTGGAGCAACATCTTA+TGG + chr3.2:81335306-81335325 MS.gene055313:CDS 40.0%
TTAGTACAGGTCGGGTTATT+GGG - chr3.2:81334533-81334552 None:intergenic 40.0%
TTCTGTTACTAGGAAGGAAG+AGG + chr3.2:81334090-81334109 MS.gene055313:CDS 40.0%
TTTCTTGAAGATCCCTACTC+AGG + chr3.2:81335502-81335521 MS.gene055313:CDS 40.0%
TTTGGATAGCAGAGATATGC+AGG + chr3.2:81334923-81334942 MS.gene055313:intron 40.0%
! CGCTTCCTTTTCTTACTATC+TGG - chr3.2:81334169-81334188 None:intergenic 40.0%
! GAGAAAGAAGCATGACAGTA+AGG + chr3.2:81334324-81334343 MS.gene055313:CDS 40.0%
! TTCTGAAGGAGGACTAAAAG+TGG - chr3.2:81335377-81335396 None:intergenic 40.0%
!! CGGAATTATGGAGTATTGGT+TGG + chr3.2:81334671-81334690 MS.gene055313:CDS 40.0%
!! TATGGAGTATTGGTTGGAGA+GGG + chr3.2:81334677-81334696 MS.gene055313:CDS 40.0%
!! TTATGGAGTATTGGTTGGAG+AGG + chr3.2:81334676-81334695 MS.gene055313:CDS 40.0%
AGAATCAGCATCCTGACAAG+GGG - chr3.2:81334784-81334803 None:intergenic 45.0%
AGATGTGCGTGCATGTTTGA+GGG - chr3.2:81335606-81335625 None:intergenic 45.0%
AGCTGATCTTAGTACAGGTC+GGG - chr3.2:81334541-81334560 None:intergenic 45.0%
AGTATGGTGAGTTCGCGATA+TGG + chr3.2:81335278-81335297 MS.gene055313:CDS 45.0%
CAACCGCCTAACTGAAATCA+TGG + chr3.2:81335119-81335138 MS.gene055313:CDS 45.0%
CACTAACCCAGACAATACTC+AGG + chr3.2:81335420-81335439 MS.gene055313:CDS 45.0%
CAGCTGATCTTAGTACAGGT+CGG - chr3.2:81334542-81334561 None:intergenic 45.0%
CATCGTCAACAGGCATTCAT+TGG + chr3.2:81334046-81334065 MS.gene055313:CDS 45.0%
CCAGACAATACTCAGGATGA+CGG + chr3.2:81335427-81335446 MS.gene055313:CDS 45.0%
CGCGATATGGAAAACTGAAG+TGG + chr3.2:81335291-81335310 MS.gene055313:CDS 45.0%
CTAAAAGTGGTGCACTCTCT+TGG - chr3.2:81335364-81335383 None:intergenic 45.0%
CTTAGTACAGGTCGGGTTAT+TGG - chr3.2:81334534-81334553 None:intergenic 45.0%
GAAGAATCAGCATCCTGACA+AGG - chr3.2:81334786-81334805 None:intergenic 45.0%
GAAGCACATTGACCGTAAAG+TGG + chr3.2:81334605-81334624 MS.gene055313:CDS 45.0%
GAAGCTTAGAGAGGTGAAAG+AGG + chr3.2:81334234-81334253 MS.gene055313:CDS 45.0%
GATACCACCATCCACTGTTA+GGG + chr3.2:81334749-81334768 MS.gene055313:CDS 45.0%
GCCTTATGGTCAGCTTATTG+AGG + chr3.2:81334258-81334277 MS.gene055313:CDS 45.0%
GGTCAATGTGCTTCAGTAAG+TGG - chr3.2:81334599-81334618 None:intergenic 45.0%
GGTTGATCCTCTTGCATTGT+GGG - chr3.2:81335724-81335743 None:intergenic 45.0%
GTCAACAGGCATTCATTGGT+TGG + chr3.2:81334050-81334069 MS.gene055313:CDS 45.0%
GTCTTGTGAGAAGCTTAGAG+AGG + chr3.2:81334225-81334244 MS.gene055313:CDS 45.0%
GTTCAACCCTGACGGAATTA+TGG + chr3.2:81334659-81334678 MS.gene055313:CDS 45.0%
TACTAGGAAGGAAGAGGACT+CGG + chr3.2:81334096-81334115 MS.gene055313:CDS 45.0%
TCAATGGCAGAAGACTTGCA+AGG + chr3.2:81335068-81335087 MS.gene055313:intron 45.0%
TCACCTCTCTAAGCTGACTA+AGG - chr3.2:81334198-81334217 None:intergenic 45.0%
TCAGCTGCCCGTAAATACAT+CGG + chr3.2:81334555-81334574 MS.gene055313:CDS 45.0%
TGAATTGGCATGCCTGAGTA+GGG - chr3.2:81335517-81335536 None:intergenic 45.0%
TGGAGGTGGAAAAACCAAGA+AGG + chr3.2:81335629-81335648 MS.gene055313:intron 45.0%
! AGGTGAAAGAGGAGTATGCT+GGG + chr3.2:81334278-81334297 MS.gene055313:CDS 45.0%
! AGGTTGATCCTCTTGCATTG+TGG - chr3.2:81335725-81335744 None:intergenic 45.0%
! AGTGGATGGTGGTATCCAAT+AGG - chr3.2:81334745-81334764 None:intergenic 45.0%
! CGTCATCCTGAGTATTGTCT+GGG - chr3.2:81335429-81335448 None:intergenic 45.0%
! GAAGAATCTGGGGTGACATT+AGG - chr3.2:81335745-81335764 None:intergenic 45.0%
! GTGGATGGTGGTATCCAATA+GGG - chr3.2:81334744-81334763 None:intergenic 45.0%
! TGGATGGTGGTATCCAATAG+GGG - chr3.2:81334743-81334762 None:intergenic 45.0%
!! ACGGATTGGCAACTTGGATA+GGG + chr3.2:81335446-81335465 MS.gene055313:CDS 45.0%
!! CAATACTCAGGATGACGGAT+TGG + chr3.2:81335432-81335451 MS.gene055313:CDS 45.0%
!! TCTTGGTTTTTCCACCTCCA+AGG - chr3.2:81335629-81335648 None:intergenic 45.0%
!!! AATATCAAAATAATATTTTA+TGG + chr3.2:81334870-81334889 MS.gene055313:intron 5.0%
AAAGATGGAGCAGCAGCTGT+TGG + chr3.2:81335939-81335958 MS.gene055313:CDS 50.0%
AACATGCACGCACATCTCCT+TGG + chr3.2:81335609-81335628 MS.gene055313:intron 50.0%
AGGATAGATGGTCAAGCGAG+AGG + chr3.2:81334344-81334363 MS.gene055313:CDS 50.0%
AGTCGGCTGAACAAAGCATG+TGG + chr3.2:81334472-81334491 MS.gene055313:CDS 50.0%
ATTGACCGTAAAGTGGCACC+TGG + chr3.2:81334612-81334631 MS.gene055313:CDS 50.0%
CAGCCTTAGTCAGCTTAGAG+AGG + chr3.2:81334192-81334211 MS.gene055313:CDS 50.0%
CGAAGATGGTTCAACCCTGA+CGG + chr3.2:81334651-81334670 MS.gene055313:CDS 50.0%
CGTCAGGGTTGAACCATCTT+CGG - chr3.2:81334653-81334672 None:intergenic 50.0%
CTCTAAGCTGACTAAGGCTG+AGG - chr3.2:81334192-81334211 None:intergenic 50.0%
CTGAATTGGCATGCCTGAGT+AGG - chr3.2:81335518-81335537 None:intergenic 50.0%
GAGATGTGCGTGCATGTTTG+AGG - chr3.2:81335607-81335626 None:intergenic 50.0%
GAGGTGAAAGAGGAGCCTTA+TGG + chr3.2:81334244-81334263 MS.gene055313:CDS 50.0%
GCTGATACCCACAATGCAAG+AGG + chr3.2:81335714-81335733 MS.gene055313:CDS 50.0%
GGATACCACCATCCACTGTT+AGG + chr3.2:81334748-81334767 MS.gene055313:CDS 50.0%
GTCGGCTGAACAAAGCATGT+GGG + chr3.2:81334473-81334492 MS.gene055313:CDS 50.0%
TGCGTGCATGTTTGAGGGTT+TGG - chr3.2:81335601-81335620 None:intergenic 50.0%
! CCGTCATCCTGAGTATTGTC+TGG - chr3.2:81335430-81335449 None:intergenic 50.0%
! GAGGTGAAAGAGGAGTATGC+TGG + chr3.2:81334277-81334296 MS.gene055313:CDS 50.0%
!! AGGATGACGGATTGGCAACT+TGG + chr3.2:81335440-81335459 MS.gene055313:CDS 50.0%
!! GACGGATTGGCAACTTGGAT+AGG + chr3.2:81335445-81335464 MS.gene055313:CDS 50.0%
ACCGTAAAGTGGCACCTGGA+GGG + chr3.2:81334616-81334635 MS.gene055313:CDS 55.0%
ATGCACGCACATCTCCTTGG+AGG + chr3.2:81335612-81335631 MS.gene055313:intron 55.0%
ATGGCCCTAACAGTGGATGG+TGG - chr3.2:81334756-81334775 None:intergenic 55.0%
CGGGCAGCTGATCTTAGTAC+AGG - chr3.2:81334546-81334565 None:intergenic 55.0%
GGCTGAACAAAGCATGTGGG+AGG + chr3.2:81334476-81334495 MS.gene055313:CDS 55.0%
TTGGTTGGAGAGGGCTGACT+TGG + chr3.2:81334686-81334705 MS.gene055313:CDS 55.0%
! GGACTGATCGGTTCCGAAGA+TGG + chr3.2:81334637-81334656 MS.gene055313:CDS 55.0%
! GTGGGGTGTTCATCGTCAAC+AGG + chr3.2:81334036-81334055 MS.gene055313:CDS 55.0%
!! AAGCATGTGGGAGGTGCTGA+AGG + chr3.2:81334485-81334504 MS.gene055313:CDS 55.0%
!! CTGGGGTTGATGACCCCTAT+TGG + chr3.2:81334727-81334746 MS.gene055313:CDS 55.0%
!! TCCCTCCAGGTGCCACTTTA+CGG - chr3.2:81334620-81334639 None:intergenic 55.0%
CACGCACATCTCCTTGGAGG+TGG + chr3.2:81335615-81335634 MS.gene055313:intron 60.0%
CAGCATCCTGACAAGGGGCA+CGG - chr3.2:81334779-81334798 None:intergenic 60.0%
CGGATGGCCCTAACAGTGGA+TGG - chr3.2:81334759-81334778 None:intergenic 60.0%
GACCGTAAAGTGGCACCTGG+AGG + chr3.2:81334615-81334634 MS.gene055313:CDS 60.0%
GCAGGAGCTCATTGCCCAGA+AGG + chr3.2:81334941-81334960 MS.gene055313:CDS 60.0%
TGGCACCTGGAGGGACTGAT+CGG + chr3.2:81334625-81334644 MS.gene055313:CDS 60.0%
! ATCCTGACAAGGGGCACGGA+TGG - chr3.2:81334775-81334794 None:intergenic 60.0%
! TGACTTGGATGACGTCCGCG+AGG + chr3.2:81334701-81334720 MS.gene055313:CDS 60.0%
!! TGGGAGGTGCTGAAGGCAGA+GGG + chr3.2:81334492-81334511 MS.gene055313:CDS 60.0%
ATGACGTCCGCGAGGAGGCT+GGG + chr3.2:81334709-81334728 MS.gene055313:CDS 65.0%
CATCAACCCCAGCCTCCTCG+CGG - chr3.2:81334719-81334738 None:intergenic 65.0%
CGGAACCGATCAGTCCCTCC+AGG - chr3.2:81334633-81334652 None:intergenic 65.0%
CTTGGATGACGTCCGCGAGG+AGG + chr3.2:81334704-81334723 MS.gene055313:CDS 65.0%
GGCACGGATGGCCCTAACAG+TGG - chr3.2:81334763-81334782 None:intergenic 65.0%
!! GGAGGTGCTGAAGGCAGAGG+GGG + chr3.2:81334494-81334513 MS.gene055313:CDS 65.0%
!! GGGAGGTGCTGAAGGCAGAG+GGG + chr3.2:81334493-81334512 MS.gene055313:CDS 65.0%
!! GTGGGAGGTGCTGAAGGCAG+AGG + chr3.2:81334491-81334510 MS.gene055313:CDS 65.0%
GATGACGTCCGCGAGGAGGC+TGG + chr3.2:81334708-81334727 MS.gene055313:CDS 70.0%
GGCCATCCGTGCCCCTTGTC+AGG + chr3.2:81334770-81334789 MS.gene055313:CDS 70.0%
TGACGTCCGCGAGGAGGCTG+GGG + chr3.2:81334710-81334729 MS.gene055313:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 81334028 81336002 81334028 ID=MS.gene055313
chr3.2 mRNA 81334028 81336002 81334028 ID=MS.gene055313.t1;Parent=MS.gene055313
chr3.2 exon 81334028 81334365 81334028 ID=MS.gene055313.t1.exon1;Parent=MS.gene055313.t1
chr3.2 CDS 81334028 81334365 81334028 ID=cds.MS.gene055313.t1;Parent=MS.gene055313.t1
chr3.2 exon 81334467 81334850 81334467 ID=MS.gene055313.t1.exon2;Parent=MS.gene055313.t1
chr3.2 CDS 81334467 81334850 81334467 ID=cds.MS.gene055313.t1;Parent=MS.gene055313.t1
chr3.2 exon 81334935 81334992 81334935 ID=MS.gene055313.t1.exon3;Parent=MS.gene055313.t1
chr3.2 CDS 81334935 81334992 81334935 ID=cds.MS.gene055313.t1;Parent=MS.gene055313.t1
chr3.2 exon 81335078 81335161 81335078 ID=MS.gene055313.t1.exon4;Parent=MS.gene055313.t1
chr3.2 CDS 81335078 81335161 81335078 ID=cds.MS.gene055313.t1;Parent=MS.gene055313.t1
chr3.2 exon 81335274 81335569 81335274 ID=MS.gene055313.t1.exon5;Parent=MS.gene055313.t1
chr3.2 CDS 81335274 81335569 81335274 ID=cds.MS.gene055313.t1;Parent=MS.gene055313.t1
chr3.2 exon 81335702 81335816 81335702 ID=MS.gene055313.t1.exon6;Parent=MS.gene055313.t1
chr3.2 CDS 81335702 81335816 81335702 ID=cds.MS.gene055313.t1;Parent=MS.gene055313.t1
chr3.2 exon 81335907 81336002 81335907 ID=MS.gene055313.t1.exon7;Parent=MS.gene055313.t1
chr3.2 CDS 81335907 81336002 81335907 ID=cds.MS.gene055313.t1;Parent=MS.gene055313.t1
Gene Sequence

>MS.gene055313

ATGGATAGGTGGGGTGTTCATCGTCAACAGGCATTCATTGGTTGGCGTGCAAGTTCTTTTCCTTCTGTTACTAGGAAGGAAGAGGACTCGGACAACGACAGAGAAGAAGTAAATGTTAAGAATGAACCAATATATTTTCCAGATAGTAAGAAAAGGAAGCGCCTCAGCCTTAGTCAGCTTAGAGAGGTGAAAGTAGAGTCTTGTGAGAAGCTTAGAGAGGTGAAAGAGGAGCCTTATGGTCAGCTTATTGAGGTGAAAGAGGAGTATGCTGGGAATCAAAGCAGTAGCAAGAATAAGAGAAAGAAGCATGACAGTAAGGATAGATGGTCAAGCGAGAGGTGAAGAAAATATATAATTTTTTTTTTTTTTACTGTTTTCGTGTTTATATCTACGATTCCACCAAGTAATTATATAGAGTTAATCATGCACTCTAATGTAGGTACAAGTCGGCTGAACAAAGCATGTGGGAGGTGCTGAAGGCAGAGGGGGCGACTTTTGAACACCCAATAACCCGACCTGTACTAAGATCAGCTGCCCGTAAATACATCGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTGACCGTAAAGTGGCACCTGGAGGGACTGATCGGTTCCGAAGATGGTTCAACCCTGACGGAATTATGGAGTATTGGTTGGAGAGGGCTGACTTGGATGACGTCCGCGAGGAGGCTGGGGTTGATGACCCCTATTGGATACCACCATCCACTGTTAGGGCCATCCGTGCCCCTTGTCAGGATGCTGATTCTTCTGCTGAATTGAAACTGCTTAAAATAGAAATGGCCCAAATGAAGAAGTACTGAACTTGAAAACAGAATATCAAAATAATATTTTATGGTTGCAATTTTATTTTTTCCTAATAATTTTATTTGGATAGCAGAGATATGCAGGAGCTCATTGCCCAGAAGGAAAAGAAAACTGAAAGTAACATGATGGAGGTGAATGTTGAATGCTTTAATATTTTAATGGTTTTGCTGTCTCTTAAAACACTTTATAATGCTTTATGTTGAATTTCAATGGCAGAAGACTTGCAAGGAACTTATGAAGTGGAAAGCTAAAACTGACAACCGCCTAACTGAAATCATGGATTCTTTGAAGAATTTGCAGGTATATATTCAAGATTTAATGGGATTTATATAATGTTGAATGCTCTCCTTTTGTTTGTTTGATTTCTCCACTTATGTGATATCTGACTTACCGTAGTTCTGTATATTAACAGGGCAAGTATGGTGAGTTCGCGATATGGAAAACTGAAGTGGAGCAACATCTTATGGATATAACAAATAAATTGAATGCTCTTCAAGCACCAAGAGAGTGCACCACTTTTAGTCCTCCTTCAGAAAAATGGAAAGATTGGTTAGAAAACACTAACCCAGACAATACTCAGGATGACGGATTGGCAACTTGGATAGGGAGTTCAGAACTATTTAATGTTCCACAAGAGTGTTTTCTTGAAGATCCCTACTCAGGCATGCCAATTCAGCCACTCAATGAAGAACTGACTAACAAGAAGAGGTAATATCTGTTTATTCAAATTCTTTAGCCAAACCCTCAAACATGCACGCACATCTCCTTGGAGGTGGAAAAACCAAGAAGGAAAAAAGTTAATTTTGTTTGTGTTATTTTGTTTTTCCTTTGAAATAATAGTCATGTTGAGGAGCTGATACCCACAATGCAAGAGGATCAACCTAATGTCACCCCAGATTCTTCTACAACTGTTAATTCAAAGGCAGACGTTGACAACTCGTTGATAATGTTTCAGGTGATGCTGATAGTGTGTATACATGCCACTTATTCCCATTTTTTCCTTCTACCACCTTCTTATATTCATGATCTATTATTTTTCTTGCAGGAGATGTTTATGGATTTATTCAAATGGAAAGAAAAGATGGAGCAGCAGCTGTTGGATGTATCAAACACTGTATATGGCATGCTAGCAATGAAGTAG

Protein sequence

>MS.gene055313.t1

MDRWGVHRQQAFIGWRASSFPSVTRKEEDSDNDREEVNVKNEPIYFPDSKKRKRLSLSQLREVKVESCEKLREVKEEPYGQLIEVKEEYAGNQSSSKNKRKKHDSKDRWSSERYKSAEQSMWEVLKAEGATFEHPITRPVLRSAARKYIGDTGLLDHLLKHIDRKVAPGGTDRFRRWFNPDGIMEYWLERADLDDVREEAGVDDPYWIPPSTVRAIRAPCQDADSSAELKLLKIEMAQMKKDMQELIAQKEKKTESNMMEKTCKELMKWKAKTDNRLTEIMDSLKNLQGKYGEFAIWKTEVEQHLMDITNKLNALQAPRECTTFSPPSEKWKDWLENTNPDNTQDDGLATWIGSSELFNVPQECFLEDPYSGMPIQPLNEELTNKKSHVEELIPTMQEDQPNVTPDSSTTVNSKADVDNSLIMFQEMFMDLFKWKEKMEQQLLDVSNTVYGMLAMK