Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58725.t1 | XP_013458178.1 | 95.4 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 9.90E-128 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58725.t1 | Q9ZT66 | 39.1 | 225 | 122 | 5 | 4 | 218 | 27 | 246 | 6.5e-35 | 149.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58725.t1 | A0A072UQU5 | 95.4 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 7.1e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66599 | MS.gene58725 | PPI |
| MS.gene58725 | MS.gene070774 | PPI |
| MS.gene58725 | MS.gene61602 | PPI |
| MS.gene061318 | MS.gene58725 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58725.t1 | MTR_4g117380 | 95.378 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 8.08e-160 | 442 |
| MS.gene58725.t1 | MTR_4g117400 | 66.527 | 239 | 79 | 1 | 1 | 238 | 55 | 293 | 7.54e-121 | 345 |
| MS.gene58725.t1 | MTR_4g117450 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 5.55e-117 | 334 |
| MS.gene58725.t1 | MTR_4g117450 | 61.600 | 250 | 84 | 2 | 1 | 238 | 1 | 250 | 9.07e-114 | 326 |
| MS.gene58725.t1 | MTR_4g117390 | 63.598 | 239 | 76 | 2 | 1 | 238 | 1 | 229 | 5.60e-109 | 313 |
| MS.gene58725.t1 | MTR_4g117450 | 67.403 | 181 | 58 | 1 | 59 | 238 | 2 | 182 | 2.58e-90 | 264 |
| MS.gene58725.t1 | MTR_2g021340 | 54.357 | 241 | 107 | 3 | 1 | 238 | 1 | 241 | 4.83e-86 | 255 |
| MS.gene58725.t1 | MTR_2g021340 | 55.157 | 223 | 98 | 2 | 18 | 238 | 22 | 244 | 1.24e-80 | 242 |
| MS.gene58725.t1 | MTR_3g005060 | 27.536 | 207 | 141 | 4 | 37 | 237 | 115 | 318 | 4.12e-15 | 73.6 |
| MS.gene58725.t1 | MTR_3g005060 | 27.536 | 207 | 141 | 4 | 37 | 237 | 129 | 332 | 4.93e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58725.t1 | AT3G23600 | 68.619 | 239 | 74 | 1 | 1 | 238 | 1 | 239 | 1.06e-125 | 356 |
| MS.gene58725.t1 | AT3G23600 | 67.364 | 239 | 74 | 2 | 1 | 238 | 1 | 236 | 1.59e-121 | 345 |
| MS.gene58725.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
| MS.gene58725.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
| MS.gene58725.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
| MS.gene58725.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 70 | 273 | 4.60e-18 | 81.3 |
| MS.gene58725.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 111 | 314 | 5.01e-18 | 81.6 |
| MS.gene58725.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 106 | 309 | 6.48e-18 | 81.3 |
Find 60 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGTCTCTGATGTTTA+TGG | 0.109227 | 8.1:-9902477 | MS.gene58725:intron |
| CTGATAGGCCCTTGCCTATT+TGG | 0.125625 | 8.1:-9900904 | MS.gene58725:CDS |
| AGAACAGCGGATTTGGAATT+AGG | 0.193141 | 8.1:+9902498 | None:intergenic |
| CAAATAGGCAAGGGCCTATC+AGG | 0.225941 | 8.1:+9900905 | None:intergenic |
| GATATGAAGCGCCAAATTTA+AGG | 0.244805 | 8.1:-9901550 | MS.gene58725:intron |
| TTCACAGCTTCTGCATCTTC+CGG | 0.247248 | 8.1:+9898560 | None:intergenic |
| AACTAGCTATACCTTAAATT+TGG | 0.258577 | 8.1:+9901539 | None:intergenic |
| GACAAGAAGAACAGCGGATT+TGG | 0.260945 | 8.1:+9902491 | None:intergenic |
| TGTTTCTGTGGATGACATAA+AGG | 0.300837 | 8.1:-9900208 | MS.gene58725:CDS |
| TCACAGCTTCTGCATCTTCC+GGG | 0.308736 | 8.1:+9898561 | None:intergenic |
| TCAGCTCCAAGTATAGAAAA+TGG | 0.312128 | 8.1:+9898991 | None:intergenic |
| GTTTCATCTGTCGGGGCTGC+TGG | 0.315874 | 8.1:-9900504 | MS.gene58725:CDS |
| TGAGGCACATCAAGACTTAC+TGG | 0.332421 | 8.1:-9898528 | MS.gene58725:CDS |
| GATTGTAGGGTTCACCATTA+AGG | 0.341648 | 8.1:+9900936 | None:intergenic |
| GTTGTTCCCGACTTCCTTAA+TGG | 0.344085 | 8.1:-9900950 | MS.gene58725:CDS |
| TTCCTAAAGTTTCCCATGGC+TGG | 0.359638 | 8.1:-9898598 | MS.gene58725:CDS |
| TCAAACTGTTTCACAAGCTC+TGG | 0.361384 | 8.1:+9898949 | None:intergenic |
| ATCAGGGTTCTCGGGATTGT+AGG | 0.369856 | 8.1:+9900922 | None:intergenic |
| GTCCAGCCATGGGAAACTTT+AGG | 0.383013 | 8.1:+9898596 | None:intergenic |
| GTAAAGGTGTTTCATCTGTC+GGG | 0.417259 | 8.1:-9900512 | MS.gene58725:CDS |
| CAAGGGCCTATCAGGGTTCT+CGG | 0.443980 | 8.1:+9900913 | None:intergenic |
| GCAGACAAAGTTGCAGCTGC+TGG | 0.444923 | 8.1:-9900983 | MS.gene58725:CDS |
| GTTTCTGTGGATGACATAAA+GGG | 0.446675 | 8.1:-9900207 | MS.gene58725:intron |
| CACCGCAGCTTGGATAAGTC+TGG | 0.448910 | 8.1:+9900248 | None:intergenic |
| ACAATCCCGAGAACCCTGAT+AGG | 0.450787 | 8.1:-9900919 | MS.gene58725:CDS |
| CCTATTTGGATAAAAGATCA+TGG | 0.453160 | 8.1:-9900890 | MS.gene58725:CDS |
| CTGAATCCGAATGCAGGATC+TGG | 0.456933 | 8.1:-9902567 | MS.gene58725:CDS |
| CATTCGGATTCAGTGTTGGT+GGG | 0.459033 | 8.1:+9902577 | None:intergenic |
| AGAAAGAAAGAAAGAATGTC+GGG | 0.484277 | 8.1:-9902618 | None:intergenic |
| ACGTGACCAGATCCTGCATT+CGG | 0.496584 | 8.1:+9902561 | None:intergenic |
| TCAGGGTTCTCGGGATTGTA+GGG | 0.497761 | 8.1:+9900923 | None:intergenic |
| GCATCCATCATTTGTTTCTG+TGG | 0.506018 | 8.1:-9900220 | MS.gene58725:CDS |
| AAGGGCCTATCAGGGTTCTC+GGG | 0.511101 | 8.1:+9900914 | None:intergenic |
| GCATTCGGATTCAGTGTTGG+TGG | 0.513869 | 8.1:+9902576 | None:intergenic |
| GGTTCACCATTAAGGAAGTC+GGG | 0.517776 | 8.1:+9900944 | None:intergenic |
| AGTAAAGGTGTTTCATCTGT+CGG | 0.519087 | 8.1:-9900513 | MS.gene58725:CDS |
| AACTGTTTCACAAGCTCTGG+AGG | 0.526203 | 8.1:+9898952 | None:intergenic |
| GATGCAACAGCACCGCAGCT+TGG | 0.538985 | 8.1:+9900238 | None:intergenic |
| TGTATCTCACAGTCCAGCCA+TGG | 0.544793 | 8.1:+9898585 | None:intergenic |
| TCATCCACAGAAACAAATGA+TGG | 0.552834 | 8.1:+9900216 | None:intergenic |
| GCTCTCAATGCCTACATCGT+CGG | 0.557731 | 8.1:-9902525 | MS.gene58725:CDS |
| CTGGACTGTGAGATACAGCC+CGG | 0.557853 | 8.1:-9898579 | MS.gene58725:CDS |
| TCTGGTCACGTTGAAAAGCT+TGG | 0.558124 | 8.1:-9902549 | MS.gene58725:CDS |
| GGGTTCACCATTAAGGAAGT+CGG | 0.562199 | 8.1:+9900943 | None:intergenic |
| AGCTGTGAAAACTGCAGATG+AGG | 0.562425 | 8.1:-9898546 | MS.gene58725:CDS |
| ATTAGGAGAACCGACGATGT+AGG | 0.563292 | 8.1:+9902515 | None:intergenic |
| TGACCGCAGATTTAGCACTA+AGG | 0.564771 | 8.1:+9898920 | None:intergenic |
| TGCAGCTGCTGGTTATTATG+TGG | 0.565842 | 8.1:-9900972 | MS.gene58725:CDS |
| ATATTTCCTAAAGTTTCCCA+TGG | 0.570812 | 8.1:-9898602 | MS.gene58725:CDS |
| CCTGCATTCGGATTCAGTGT+TGG | 0.576766 | 8.1:+9902573 | None:intergenic |
| CCAACACTGAATCCGAATGC+AGG | 0.579836 | 8.1:-9902573 | MS.gene58725:CDS |
| CACATCAAGACTTACTGGAC+TGG | 0.583292 | 8.1:-9898523 | MS.gene58725:CDS |
| GTATCTCACAGTCCAGCCAT+GGG | 0.606707 | 8.1:+9898586 | None:intergenic |
| TTATTATATTAACAGGACAA+AGG | 0.624184 | 8.1:-9900573 | MS.gene58725:intron |
| AAATAGGCAAGGGCCTATCA+GGG | 0.626194 | 8.1:+9900906 | None:intergenic |
| ATCCAGACTTATCCAAGCTG+CGG | 0.640963 | 8.1:-9900250 | MS.gene58725:CDS |
| TAAAGGTGTTTCATCTGTCG+GGG | 0.641381 | 8.1:-9900511 | MS.gene58725:CDS |
| TTGGATAAAAGATCATGGAA+CGG | 0.646563 | 8.1:-9900885 | MS.gene58725:intron |
| AATCCTTAGTGCTAAATCTG+CGG | 0.663773 | 8.1:-9898923 | MS.gene58725:intron |
| ATCAGAGACAAGAAGAACAG+CGG | 0.690019 | 8.1:+9902485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTGTAATTTATAAAGT+CGG | - | chr8.1:9899829-9899848 | MS.gene58725:intron | 10.0% |
| !! | TTAATTAAGCAAAAAAAAAA+AGG | + | chr8.1:9898700-9898719 | None:intergenic | 10.0% |
| !! | AAAAAAAAGGTGAATAAAAA+TGG | + | chr8.1:9898687-9898706 | None:intergenic | 15.0% |
| !! | AGTTAATAAAGTAAAATGAA+TGG | + | chr8.1:9898784-9898803 | None:intergenic | 15.0% |
| !! | ATACCTATTATTATATTAAC+AGG | - | chr8.1:9900525-9900544 | MS.gene58725:CDS | 15.0% |
| !! | TAAGAAAAATGTATAAATGA+AGG | + | chr8.1:9901431-9901450 | None:intergenic | 15.0% |
| !! | TCTTAAAGACTTAAAAATTA+TGG | - | chr8.1:9898850-9898869 | MS.gene58725:intron | 15.0% |
| !!! | ATTCTAATCTTATCTTTTTT+TGG | - | chr8.1:9902252-9902271 | MS.gene58725:intron | 15.0% |
| !!! | ATTTTCTTAAAAAAACTAGA+AGG | - | chr8.1:9899801-9899820 | MS.gene58725:intron | 15.0% |
| !!! | TACAATTAAATGCATATTTT+TGG | + | chr8.1:9901615-9901634 | None:intergenic | 15.0% |
| !!! | TGACTAGATTTTTAATTTAT+AGG | - | chr8.1:9899898-9899917 | MS.gene58725:intron | 15.0% |
| !!! | TTTTCTTAAAAAAACTAGAA+GGG | - | chr8.1:9899802-9899821 | MS.gene58725:intron | 15.0% |
| !!! | TTTTTAATTTGTACTTTTTG+TGG | - | chr8.1:9899434-9899453 | MS.gene58725:intron | 15.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | + | chr8.1:9901344-9901363 | None:intergenic | 20.0% |
| !! | AAATTGATTGTAATTACAAC+TGG | + | chr8.1:9901037-9901056 | None:intergenic | 20.0% |
| !! | AAGATTAGAATATCAAAAGA+TGG | + | chr8.1:9902243-9902262 | None:intergenic | 20.0% |
| !! | AATAAATATAACCAATCATG+AGG | + | chr8.1:9901709-9901728 | None:intergenic | 20.0% |
| !! | ATCATTTAGTAATGAGAAAT+TGG | + | chr8.1:9899776-9899795 | None:intergenic | 20.0% |
| !! | CTTAAAAATTATGGTTAACT+AGG | - | chr8.1:9898859-9898878 | MS.gene58725:intron | 20.0% |
| !! | GATAATGATAATATGATACA+GGG | - | chr8.1:9899176-9899195 | MS.gene58725:intron | 20.0% |
| !! | GTTAATTATTGTTCTTATTC+AGG | - | chr8.1:9902081-9902100 | MS.gene58725:intron | 20.0% |
| !! | TATATACTAGTGCAAAAATT+AGG | - | chr8.1:9901756-9901775 | MS.gene58725:intron | 20.0% |
| !! | TGTCCTGTTAATATAATAAT+AGG | + | chr8.1:9900531-9900550 | None:intergenic | 20.0% |
| !! | TTATTATATTAACAGGACAA+AGG | - | chr8.1:9900532-9900551 | MS.gene58725:CDS | 20.0% |
| !!! | ACTTACTGAAACTTTAATTT+TGG | - | chr8.1:9900349-9900368 | MS.gene58725:intron | 20.0% |
| !!! | AGTTCTTATTTAACAATTCT+TGG | - | chr8.1:9900245-9900264 | MS.gene58725:CDS | 20.0% |
| !!! | ATTTTTTGTACAACCAAATT+TGG | + | chr8.1:9899122-9899141 | None:intergenic | 20.0% |
| !!! | GTATCAAATTTAGTCATTTT+TGG | - | chr8.1:9899605-9899624 | MS.gene58725:intron | 20.0% |
| !!! | TGATAATGATAATATGATAC+AGG | - | chr8.1:9899175-9899194 | MS.gene58725:intron | 20.0% |
| !!! | TTTTCTCTTTTACTTATCAA+AGG | + | chr8.1:9900288-9900307 | None:intergenic | 20.0% |
| !!! | TTTTTTTACTTTTTCCTGTT+AGG | - | chr8.1:9899679-9899698 | MS.gene58725:intron | 20.0% |
| ! | AACTAGCTATACCTTAAATT+TGG | + | chr8.1:9899569-9899588 | None:intergenic | 25.0% |
| ! | AAGAATATAAATGCAGTATG+AGG | + | chr8.1:9899405-9899424 | None:intergenic | 25.0% |
| ! | AAGTAACAAAAATCAGCATT+TGG | - | chr8.1:9899480-9899499 | MS.gene58725:intron | 25.0% |
| ! | AATTCATATGTTCTCACTAA+CGG | + | chr8.1:9899313-9899332 | None:intergenic | 25.0% |
| ! | ACAGTTTATCTAACTTATGT+CGG | - | chr8.1:9901921-9901940 | MS.gene58725:intron | 25.0% |
| ! | AGAATATAAATGCAGTATGA+GGG | + | chr8.1:9899404-9899423 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATCAGCATTT+GGG | - | chr8.1:9899481-9899500 | MS.gene58725:intron | 25.0% |
| ! | ATATGTGTGAAATGAGTAAA+TGG | - | chr8.1:9901451-9901470 | MS.gene58725:intron | 25.0% |
| ! | ATGAAACATGTAGATTGTAT+TGG | + | chr8.1:9900014-9900033 | None:intergenic | 25.0% |
| ! | ATGAGAAATTATAAGCGAAA+AGG | + | chr8.1:9899968-9899987 | None:intergenic | 25.0% |
| ! | ATTATCATTATCAACTCTAG+TGG | + | chr8.1:9899168-9899187 | None:intergenic | 25.0% |
| ! | ATTGAAGCCATAAAAAGTAA+AGG | - | chr8.1:9900577-9900596 | MS.gene58725:intron | 25.0% |
| ! | ATTTGAACACGTTAAAATTG+TGG | + | chr8.1:9898827-9898846 | None:intergenic | 25.0% |
| ! | CAAAGTGGAATATATTGAAT+TGG | + | chr8.1:9901345-9901364 | None:intergenic | 25.0% |
| ! | CTTATAATTTCTCATGTTGT+TGG | - | chr8.1:9899973-9899992 | MS.gene58725:intron | 25.0% |
| ! | GTTGTATTGAAAAGTGAAAT+GGG | + | chr8.1:9901296-9901315 | None:intergenic | 25.0% |
| ! | TAATGCCAATAGAATATGTA+AGG | + | chr8.1:9901209-9901228 | None:intergenic | 25.0% |
| ! | TAGTACCTTACATATTCTAT+TGG | - | chr8.1:9901201-9901220 | MS.gene58725:intron | 25.0% |
| ! | TAGTGTTTAAAAAGGTGAAA+AGG | + | chr8.1:9902438-9902457 | None:intergenic | 25.0% |
| ! | TGAGTTACTAGTGTTTAAAA+AGG | + | chr8.1:9902446-9902465 | None:intergenic | 25.0% |
| ! | TGTTGTATTGAAAAGTGAAA+TGG | + | chr8.1:9901297-9901316 | None:intergenic | 25.0% |
| ! | TTCAGTAAGTATACAAAAAC+TGG | + | chr8.1:9900339-9900358 | None:intergenic | 25.0% |
| ! | TTGTATAAGATGCAGTTTAA+TGG | - | chr8.1:9901796-9901815 | MS.gene58725:intron | 25.0% |
| !! | ACTTTTTATGGCTTCAATTA+TGG | + | chr8.1:9900575-9900594 | None:intergenic | 25.0% |
| !! | ATGAGAAAATATGATCGTTT+TGG | + | chr8.1:9901146-9901165 | None:intergenic | 25.0% |
| !! | CAAATATTTTCGTACAGAAA+AGG | + | chr8.1:9900709-9900728 | None:intergenic | 25.0% |
| !! | CGTAGAATTATTTGGTTTAT+TGG | - | chr8.1:9899933-9899952 | MS.gene58725:intron | 25.0% |
| !! | CTTTTTATGGCTTCAATTAT+GGG | + | chr8.1:9900574-9900593 | None:intergenic | 25.0% |
| !! | TAATTTGCGTATTGTTTGTA+TGG | - | chr8.1:9900938-9900957 | MS.gene58725:CDS | 25.0% |
| !! | TTAATGTTTGAAATGCAACT+AGG | - | chr8.1:9900760-9900779 | MS.gene58725:intron | 25.0% |
| !! | TTAATTTTCTCTTTCGTTTG+TGG | - | chr8.1:9902210-9902229 | MS.gene58725:intron | 25.0% |
| !!! | CTTGTATGTTTTCAAGTAAT+AGG | - | chr8.1:9901071-9901090 | MS.gene58725:intron | 25.0% |
| !!! | GGACAATATTTTTTTGCAAA+TGG | + | chr8.1:9901261-9901280 | None:intergenic | 25.0% |
| !!! | TGAAACACCTTTACTTTTTA+TGG | + | chr8.1:9900587-9900606 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTGTATCAGCTA+AGG | - | chr8.1:9900813-9900832 | MS.gene58725:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+AGG | - | chr8.1:9899378-9899397 | MS.gene58725:intron | 30.0% | |
| AAAATATTTGAGCTCGTCAT+AGG | - | chr8.1:9900719-9900738 | MS.gene58725:intron | 30.0% | |
| AGGTACTAGTACCAAATAAT+AGG | + | chr8.1:9901189-9901208 | None:intergenic | 30.0% | |
| ATAAGAAATAAGTAGAGGTG+TGG | + | chr8.1:9900676-9900695 | None:intergenic | 30.0% | |
| ATATTTCCTAAAGTTTCCCA+TGG | - | chr8.1:9902503-9902522 | MS.gene58725:CDS | 30.0% | |
| ATCATGTGAACACATTACAA+TGG | + | chr8.1:9900065-9900084 | None:intergenic | 30.0% | |
| ATTTATCCCTTGCAATAACA+AGG | + | chr8.1:9899647-9899666 | None:intergenic | 30.0% | |
| CCTATTTGGATAAAAGATCA+TGG | - | chr8.1:9900215-9900234 | MS.gene58725:CDS | 30.0% | |
| CTACTATAATAAGTGCAAAG+TGG | + | chr8.1:9901360-9901379 | None:intergenic | 30.0% | |
| CTCGGTATTAATTGATTACT+TGG | - | chr8.1:9901947-9901966 | MS.gene58725:intron | 30.0% | |
| CTGTTAGAATATGAACATCT+CGG | + | chr8.1:9902062-9902081 | None:intergenic | 30.0% | |
| GACGATAAATATGGTCATTA+AGG | + | chr8.1:9901110-9901129 | None:intergenic | 30.0% | |
| GATGCATAAGAAATAAGTAG+AGG | + | chr8.1:9900653-9900672 | None:intergenic | 30.0% | |
| GCATTTGTCGTAGAATTATT+TGG | - | chr8.1:9899925-9899944 | MS.gene58725:intron | 30.0% | |
| GTGGTTAACAAGATTCAAAT+AGG | + | chr8.1:9899075-9899094 | None:intergenic | 30.0% | |
| TAAGTGCTCTTGTTAAGTAT+TGG | + | chr8.1:9901391-9901410 | None:intergenic | 30.0% | |
| TAATGACCATATTTATCGTC+AGG | - | chr8.1:9901110-9901129 | MS.gene58725:intron | 30.0% | |
| TAATTAATCACCTTAATCCG+AGG | - | chr8.1:9899010-9899029 | MS.gene58725:intron | 30.0% | |
| TACCAAATAATAGGCAACTA+TGG | + | chr8.1:9901180-9901199 | None:intergenic | 30.0% | |
| TACTATTCATAAGCTTGTCA+AGG | - | chr8.1:9899251-9899270 | MS.gene58725:intron | 30.0% | |
| TAGAATTCAAGAAACCTAAC+AGG | + | chr8.1:9899696-9899715 | None:intergenic | 30.0% | |
| TTAATTGTAACATACAGCAG+AGG | - | chr8.1:9901626-9901645 | MS.gene58725:intron | 30.0% | |
| TTGGATAAAAGATCATGGAA+CGG | - | chr8.1:9900220-9900239 | MS.gene58725:CDS | 30.0% | |
| TTGTTTGTTTACTGCTTTGA+AGG | - | chr8.1:9900093-9900112 | MS.gene58725:intron | 30.0% | |
| ! | AAATTGGATTAGAGAGAACA+TGG | + | chr8.1:9899760-9899779 | None:intergenic | 30.0% |
| ! | ATCTTTTATCCAAATAGGCA+AGG | + | chr8.1:9900213-9900232 | None:intergenic | 30.0% |
| ! | ATTTAAGGTATAGCTAGTTC+TGG | - | chr8.1:9899570-9899589 | MS.gene58725:intron | 30.0% |
| ! | CATTTAACTTATGCTTCTAG+AGG | - | chr8.1:9901825-9901844 | MS.gene58725:intron | 30.0% |
| ! | CCATGATCTTTTATCCAAAT+AGG | + | chr8.1:9900218-9900237 | None:intergenic | 30.0% |
| ! | GACATTCCATTTTCTATACT+TGG | - | chr8.1:9902108-9902127 | MS.gene58725:intron | 30.0% |
| ! | TAAGAAATAAGTAGAGGTGT+GGG | + | chr8.1:9900675-9900694 | None:intergenic | 30.0% |
| ! | TCTTTTATCCAAATAGGCAA+GGG | + | chr8.1:9900212-9900231 | None:intergenic | 30.0% |
| ! | TTGTTATTGCAAGGGATAAA+TGG | - | chr8.1:9899646-9899665 | MS.gene58725:intron | 30.0% |
| !! | ATATGCTTAATTTGTCTTGC+AGG | - | chr8.1:9899533-9899552 | MS.gene58725:intron | 30.0% |
| !! | TTTGGCAACAACTTTTTAAG+TGG | + | chr8.1:9899094-9899113 | None:intergenic | 30.0% |
| !!! | TGAAATGGGTCAACTTTTTT+GGG | + | chr8.1:9901282-9901301 | None:intergenic | 30.0% |
| AACAAAAGACGCAAAGACAA+TGG | + | chr8.1:9901901-9901920 | None:intergenic | 35.0% | |
| AAGCATATGCAGTTAGTAGA+AGG | + | chr8.1:9899521-9899540 | None:intergenic | 35.0% | |
| AATAGGTATGCATCAGAGAA+TGG | + | chr8.1:9900514-9900533 | None:intergenic | 35.0% | |
| AATATGATACAGGGTCTCTT+TGG | - | chr8.1:9899185-9899204 | MS.gene58725:intron | 35.0% | |
| AATCCTTAGTGCTAAATCTG+CGG | - | chr8.1:9902182-9902201 | MS.gene58725:intron | 35.0% | |
| ACAAAAGACGCAAAGACAAT+GGG | + | chr8.1:9901900-9901919 | None:intergenic | 35.0% | |
| AGGCTAATTACATGCTACAT+AGG | - | chr8.1:9901845-9901864 | MS.gene58725:intron | 35.0% | |
| ATCAAAACCACCAATAAAGG+TGG | + | chr8.1:9900442-9900461 | None:intergenic | 35.0% | |
| ATCATTATCAACTCTAGTGG+TGG | + | chr8.1:9899165-9899184 | None:intergenic | 35.0% | |
| ATGGCTCAGTTAATCTAGAA+CGG | - | chr8.1:9901470-9901489 | MS.gene58725:intron | 35.0% | |
| CAACCAAATTTGGAGAACTT+TGG | + | chr8.1:9899112-9899131 | None:intergenic | 35.0% | |
| CACCATAGTTGCCTATTATT+TGG | - | chr8.1:9901175-9901194 | MS.gene58725:intron | 35.0% | |
| CACGTTAAAATTGTGGTTGA+TGG | + | chr8.1:9898820-9898839 | None:intergenic | 35.0% | |
| CTTCTTGTCTCTGATGTTTA+TGG | - | chr8.1:9898628-9898647 | MS.gene58725:intron | 35.0% | |
| GCAAATGGCTCAGTTATTAT+GGG | + | chr8.1:9901246-9901265 | None:intergenic | 35.0% | |
| GTTTCTGTGGATGACATAAA+GGG | - | chr8.1:9900898-9900917 | MS.gene58725:CDS | 35.0% | |
| TATGAAAAACATGCACTCCT+CGG | + | chr8.1:9898978-9898997 | None:intergenic | 35.0% | |
| TCAAAACCACCAATAAAGGT+GGG | + | chr8.1:9900441-9900460 | None:intergenic | 35.0% | |
| TCAGCTCCAAGTATAGAAAA+TGG | + | chr8.1:9902117-9902136 | None:intergenic | 35.0% | |
| TCATCCACAGAAACAAATGA+TGG | + | chr8.1:9900892-9900911 | None:intergenic | 35.0% | |
| TCTAACTTATGTCGGTAACT+CGG | - | chr8.1:9901929-9901948 | MS.gene58725:intron | 35.0% | |
| TGCAAATGGCTCAGTTATTA+TGG | + | chr8.1:9901247-9901266 | None:intergenic | 35.0% | |
| TTGCCAAAGTTCTCCAAATT+TGG | - | chr8.1:9899106-9899125 | MS.gene58725:intron | 35.0% | |
| ! | ATGCAGTTAGTAGAAGGTTT+TGG | + | chr8.1:9899515-9899534 | None:intergenic | 35.0% |
| ! | ATTTTCGTACAGAAAAGGTG+TGG | + | chr8.1:9900704-9900723 | None:intergenic | 35.0% |
| ! | CATTAGCCTGACGATAAATA+TGG | + | chr8.1:9901119-9901138 | None:intergenic | 35.0% |
| ! | GATATGAAGCGCCAAATTTA+AGG | - | chr8.1:9899555-9899574 | MS.gene58725:intron | 35.0% |
| ! | TAAGATGCAGTTTAATGGAC+TGG | - | chr8.1:9901801-9901820 | MS.gene58725:intron | 35.0% |
| ! | TCCTAGTGTTTTACATGCAT+CGG | + | chr8.1:9898945-9898964 | None:intergenic | 35.0% |
| ! | TGTTTCTGTGGATGACATAA+AGG | - | chr8.1:9900897-9900916 | MS.gene58725:CDS | 35.0% |
| !! | AAGATGCAGTTTAATGGACT+GGG | - | chr8.1:9901802-9901821 | MS.gene58725:intron | 35.0% |
| !! | AGTAAAGGTGTTTCATCTGT+CGG | - | chr8.1:9900592-9900611 | MS.gene58725:intron | 35.0% |
| !! | CAGAGGTATTTCAAACACAA+TGG | - | chr8.1:9901643-9901662 | MS.gene58725:intron | 35.0% |
| !! | CATGTACCTTGTTATTGCAA+GGG | - | chr8.1:9899638-9899657 | MS.gene58725:intron | 35.0% |
| !! | TTTTCGTACAGAAAAGGTGT+GGG | + | chr8.1:9900703-9900722 | None:intergenic | 35.0% |
| !!! | CCTTTATTGGTGGTTTTGAT+CGG | - | chr8.1:9900442-9900461 | MS.gene58725:intron | 35.0% |
| !!! | GTGAAATGGGTCAACTTTTT+TGG | + | chr8.1:9901283-9901302 | None:intergenic | 35.0% |
| AAGCTAAACACACGCATTGT+TGG | - | chr8.1:9902374-9902393 | MS.gene58725:intron | 40.0% | |
| AGAGAAGAGAAGAGAAGAGA+AGG | + | chr8.1:9898656-9898675 | None:intergenic | 40.0% | |
| ATCAGAGACAAGAAGAACAG+CGG | + | chr8.1:9898623-9898642 | None:intergenic | 40.0% | |
| ATGGCTCAGTTATTATGGGA+CGG | + | chr8.1:9901242-9901261 | None:intergenic | 40.0% | |
| CCGATCAAAACCACCAATAA+AGG | + | chr8.1:9900445-9900464 | None:intergenic | 40.0% | |
| GATTGTAGGGTTCACCATTA+AGG | + | chr8.1:9900172-9900191 | None:intergenic | 40.0% | |
| TCAAACTGTTTCACAAGCTC+TGG | + | chr8.1:9902159-9902178 | None:intergenic | 40.0% | |
| ! | AGAACAGCGGATTTGGAATT+AGG | + | chr8.1:9898610-9898629 | None:intergenic | 40.0% |
| ! | CTCAGTTAATCTAGAACGGA+GGG | - | chr8.1:9901474-9901493 | MS.gene58725:intron | 40.0% |
| !! | GCATCCATCATTTGTTTCTG+TGG | - | chr8.1:9900885-9900904 | MS.gene58725:intron | 40.0% |
| !! | GCATGTACCTTGTTATTGCA+AGG | - | chr8.1:9899637-9899656 | MS.gene58725:intron | 40.0% |
| !! | GTAAAGGTGTTTCATCTGTC+GGG | - | chr8.1:9900593-9900612 | MS.gene58725:intron | 40.0% |
| !! | TAAAGGTGTTTCATCTGTCG+GGG | - | chr8.1:9900594-9900613 | MS.gene58725:intron | 40.0% |
| AAACCACCAATAAAGGTGGG+AGG | + | chr8.1:9900438-9900457 | None:intergenic | 45.0% | |
| AAAGCAGTGCTCACATAAGC+AGG | + | chr8.1:9899722-9899741 | None:intergenic | 45.0% | |
| AAATAGGCAAGGGCCTATCA+GGG | + | chr8.1:9900202-9900221 | None:intergenic | 45.0% | |
| AACATGCACTCCTCGGATTA+AGG | + | chr8.1:9898971-9898990 | None:intergenic | 45.0% | |
| ACTAGGACACAGTTAATCCG+AGG | - | chr8.1:9898958-9898977 | MS.gene58725:CDS | 45.0% | |
| AGCTGTGAAAACTGCAGATG+AGG | - | chr8.1:9902559-9902578 | MS.gene58725:CDS | 45.0% | |
| AGTTCGTGGTCTATGAAGCA+CGG | - | chr8.1:9898886-9898905 | MS.gene58725:intron | 45.0% | |
| ATCCAGACTTATCCAAGCTG+CGG | - | chr8.1:9900855-9900874 | MS.gene58725:intron | 45.0% | |
| ATTAGGAGAACCGACGATGT+AGG | + | chr8.1:9898593-9898612 | None:intergenic | 45.0% | |
| CAATAAAGGTGGGAGGACAA+TGG | + | chr8.1:9900431-9900450 | None:intergenic | 45.0% | |
| CACATCAAGACTTACTGGAC+TGG | - | chr8.1:9902582-9902601 | MS.gene58725:CDS | 45.0% | |
| CATTGTCCTCCCACCTTTAT+TGG | - | chr8.1:9900429-9900448 | MS.gene58725:intron | 45.0% | |
| CTCAGTTATTATGGGACGGA+GGG | + | chr8.1:9901238-9901257 | None:intergenic | 45.0% | |
| CTTGGCTGCACGACAAAAAT+AGG | + | chr8.1:9902473-9902492 | None:intergenic | 45.0% | |
| GACGCAAAGACAATGGGAAA+AGG | + | chr8.1:9901894-9901913 | None:intergenic | 45.0% | |
| GCCGATGCATGTAAAACACT+AGG | - | chr8.1:9898941-9898960 | MS.gene58725:CDS | 45.0% | |
| GGGTTCACCATTAAGGAAGT+CGG | + | chr8.1:9900165-9900184 | None:intergenic | 45.0% | |
| GGTTCACCATTAAGGAAGTC+GGG | + | chr8.1:9900164-9900183 | None:intergenic | 45.0% | |
| GTACTTAGCTGCCTCATGAT+TGG | - | chr8.1:9901695-9901714 | MS.gene58725:intron | 45.0% | |
| GTTAACTAGGTCCAAGTTCG+TGG | - | chr8.1:9898872-9898891 | MS.gene58725:intron | 45.0% | |
| GTTGTTCCCGACTTCCTTAA+TGG | - | chr8.1:9900155-9900174 | MS.gene58725:intron | 45.0% | |
| TCTGGTCACGTTGAAAAGCT+TGG | - | chr8.1:9898556-9898575 | MS.gene58725:CDS | 45.0% | |
| TGACCGCAGATTTAGCACTA+AGG | + | chr8.1:9902188-9902207 | None:intergenic | 45.0% | |
| TGAGGCACATCAAGACTTAC+TGG | - | chr8.1:9902577-9902596 | MS.gene58725:CDS | 45.0% | |
| TGCTTCATAGACCACGAACT+TGG | + | chr8.1:9898886-9898905 | None:intergenic | 45.0% | |
| TTCACAGCTTCTGCATCTTC+CGG | + | chr8.1:9902548-9902567 | None:intergenic | 45.0% | |
| TTCCTAAAGTTTCCCATGGC+TGG | - | chr8.1:9902507-9902526 | MS.gene58725:CDS | 45.0% | |
| ! | AACTGTTTCACAAGCTCTGG+AGG | + | chr8.1:9902156-9902175 | None:intergenic | 45.0% |
| ! | GACAAGAAGAACAGCGGATT+TGG | + | chr8.1:9898617-9898636 | None:intergenic | 45.0% |
| ! | GCTCAGTTAATCTAGAACGG+AGG | - | chr8.1:9901473-9901492 | MS.gene58725:intron | 45.0% |
| ! | TGCAGCTGCTGGTTATTATG+TGG | - | chr8.1:9900133-9900152 | MS.gene58725:intron | 45.0% |
| !! | CATTCGGATTCAGTGTTGGT+GGG | + | chr8.1:9898531-9898550 | None:intergenic | 45.0% |
| !!! | CATATTTTTTATTTTTTTTT+TGG | - | chr8.1:9902348-9902367 | MS.gene58725:intron | 5.0% |
| ACAATCCCGAGAACCCTGAT+AGG | - | chr8.1:9900186-9900205 | MS.gene58725:intron | 50.0% | |
| ACGTGACCAGATCCTGCATT+CGG | + | chr8.1:9898547-9898566 | None:intergenic | 50.0% | |
| ATCAGGGTTCTCGGGATTGT+AGG | + | chr8.1:9900186-9900205 | None:intergenic | 50.0% | |
| ATGCAGTATGAGGGCCTGTT+TGG | + | chr8.1:9899395-9899414 | None:intergenic | 50.0% | |
| CAAATAGGCAAGGGCCTATC+AGG | + | chr8.1:9900203-9900222 | None:intergenic | 50.0% | |
| CCAACACTGAATCCGAATGC+AGG | - | chr8.1:9898532-9898551 | MS.gene58725:CDS | 50.0% | |
| CCTGCATTCGGATTCAGTGT+TGG | + | chr8.1:9898535-9898554 | None:intergenic | 50.0% | |
| CTGAATCCGAATGCAGGATC+TGG | - | chr8.1:9898538-9898557 | MS.gene58725:CDS | 50.0% | |
| CTGATAGGCCCTTGCCTATT+TGG | - | chr8.1:9900201-9900220 | MS.gene58725:intron | 50.0% | |
| GCTCAGTTATTATGGGACGG+AGG | + | chr8.1:9901239-9901258 | None:intergenic | 50.0% | |
| GCTCTCAATGCCTACATCGT+CGG | - | chr8.1:9898580-9898599 | MS.gene58725:CDS | 50.0% | |
| GTATCTCACAGTCCAGCCAT+GGG | + | chr8.1:9902522-9902541 | None:intergenic | 50.0% | |
| GTATGAGGGCCTGTTTGGAT+TGG | + | chr8.1:9899390-9899409 | None:intergenic | 50.0% | |
| GTCCAGCCATGGGAAACTTT+AGG | + | chr8.1:9902512-9902531 | None:intergenic | 50.0% | |
| TCACAGCTTCTGCATCTTCC+GGG | + | chr8.1:9902547-9902566 | None:intergenic | 50.0% | |
| TCAGGGTTCTCGGGATTGTA+GGG | + | chr8.1:9900185-9900204 | None:intergenic | 50.0% | |
| TGTATCTCACAGTCCAGCCA+TGG | + | chr8.1:9902523-9902542 | None:intergenic | 50.0% | |
| TGTCCTCCCACCTTTATTGG+TGG | - | chr8.1:9900432-9900451 | MS.gene58725:intron | 50.0% | |
| ! | GCATTCGGATTCAGTGTTGG+TGG | + | chr8.1:9898532-9898551 | None:intergenic | 50.0% |
| !! | GTTTTACATGCATCGGCGTC+CGG | + | chr8.1:9898938-9898957 | None:intergenic | 50.0% |
| AAGGGCCTATCAGGGTTCTC+GGG | + | chr8.1:9900194-9900213 | None:intergenic | 55.0% | |
| CAAGGGCCTATCAGGGTTCT+CGG | + | chr8.1:9900195-9900214 | None:intergenic | 55.0% | |
| CACCGCAGCTTGGATAAGTC+TGG | + | chr8.1:9900860-9900879 | None:intergenic | 55.0% | |
| CTGGACTGTGAGATACAGCC+CGG | - | chr8.1:9902526-9902545 | MS.gene58725:CDS | 55.0% | |
| GCAGACAAAGTTGCAGCTGC+TGG | - | chr8.1:9900122-9900141 | MS.gene58725:intron | 55.0% | |
| GGTCTATGAAGCACGGACAC+CGG | - | chr8.1:9898893-9898912 | MS.gene58725:intron | 55.0% | |
| ! | CGGGGCTGCTGGATTTTGTT+GGG | - | chr8.1:9900612-9900631 | MS.gene58725:intron | 55.0% |
| ! | GCTGCTGGATTTTGTTGGGG+TGG | - | chr8.1:9900616-9900635 | MS.gene58725:intron | 55.0% |
| ! | GGGGCTGCTGGATTTTGTTG+GGG | - | chr8.1:9900613-9900632 | MS.gene58725:intron | 55.0% |
| ! | TCGGGGCTGCTGGATTTTGT+TGG | - | chr8.1:9900611-9900630 | MS.gene58725:intron | 55.0% |
| ACACCACACACCGACGACAC+CGG | - | chr8.1:9898916-9898935 | MS.gene58725:intron | 60.0% | |
| GATGCAACAGCACCGCAGCT+TGG | + | chr8.1:9900870-9900889 | None:intergenic | 60.0% | |
| GTTTCATCTGTCGGGGCTGC+TGG | - | chr8.1:9900601-9900620 | MS.gene58725:intron | 60.0% | |
| TGTCGTCGGTGTGTGGTGTC+CGG | + | chr8.1:9898915-9898934 | None:intergenic | 60.0% | |
| !! | CGTCCGGTGTCGTCGGTGTG+TGG | + | chr8.1:9898922-9898941 | None:intergenic | 70.0% |
| !! | GCATCGGCGTCCGGTGTCGT+CGG | + | chr8.1:9898929-9898948 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 9898502 | 9902625 | 9898502 | ID=MS.gene58725 |
| chr8.1 | mRNA | 9898502 | 9902625 | 9898502 | ID=MS.gene58725.t1;Parent=MS.gene58725 |
| chr8.1 | exon | 9902478 | 9902625 | 9902478 | ID=MS.gene58725.t1.exon1;Parent=MS.gene58725.t1 |
| chr8.1 | CDS | 9902478 | 9902625 | 9902478 | ID=cds.MS.gene58725.t1;Parent=MS.gene58725.t1 |
| chr8.1 | exon | 9901551 | 9901572 | 9901551 | ID=MS.gene58725.t1.exon2;Parent=MS.gene58725.t1 |
| chr8.1 | CDS | 9901551 | 9901572 | 9901551 | ID=cds.MS.gene58725.t1;Parent=MS.gene58725.t1 |
| chr8.1 | exon | 9900886 | 9901012 | 9900886 | ID=MS.gene58725.t1.exon3;Parent=MS.gene58725.t1 |
| chr8.1 | CDS | 9900886 | 9901012 | 9900886 | ID=cds.MS.gene58725.t1;Parent=MS.gene58725.t1 |
| chr8.1 | exon | 9900490 | 9900580 | 9900490 | ID=MS.gene58725.t1.exon4;Parent=MS.gene58725.t1 |
| chr8.1 | CDS | 9900490 | 9900580 | 9900490 | ID=cds.MS.gene58725.t1;Parent=MS.gene58725.t1 |
| chr8.1 | exon | 9900208 | 9900297 | 9900208 | ID=MS.gene58725.t1.exon5;Parent=MS.gene58725.t1 |
| chr8.1 | CDS | 9900208 | 9900297 | 9900208 | ID=cds.MS.gene58725.t1;Parent=MS.gene58725.t1 |
| chr8.1 | exon | 9898924 | 9899024 | 9898924 | ID=MS.gene58725.t1.exon6;Parent=MS.gene58725.t1 |
| chr8.1 | CDS | 9898924 | 9899024 | 9898924 | ID=cds.MS.gene58725.t1;Parent=MS.gene58725.t1 |
| chr8.1 | exon | 9898502 | 9898639 | 9898502 | ID=MS.gene58725.t1.exon7;Parent=MS.gene58725.t1 |
| chr8.1 | CDS | 9898502 | 9898639 | 9898502 | ID=cds.MS.gene58725.t1;Parent=MS.gene58725.t1 |
| Gene Sequence |
| Protein sequence |
