Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59216.t1 | XP_003592114.1 | 77.9 | 612 | 117 | 4 | 43 | 650 | 40 | 637 | 1.20E-183 | 653.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59216.t1 | Q39117 | 46.0 | 531 | 212 | 10 | 41 | 560 | 23 | 489 | 6.0e-75 | 283.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59216.t1 | G7ICZ1 | 77.9 | 612 | 117 | 4 | 43 | 650 | 40 | 637 | 8.6e-184 | 653.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59216.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050128 | MS.gene59216 | 0.822617 | 2.15E-53 | -1.69E-46 |
| MS.gene051535 | MS.gene59216 | 0.811984 | 5.33E-51 | -1.69E-46 |
| MS.gene053073 | MS.gene59216 | 0.801329 | 9.48E-49 | -1.69E-46 |
| MS.gene053559 | MS.gene59216 | 0.848356 | 6.46E-60 | -1.69E-46 |
| MS.gene060084 | MS.gene59216 | 0.823025 | 1.73E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene59216 | 0.829315 | 5.51E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59216.t1 | MTR_1g098900 | 89.771 | 655 | 44 | 7 | 1 | 650 | 1 | 637 | 0.0 | 1060 |
| MS.gene59216.t1 | MTR_6g035370 | 53.514 | 626 | 201 | 14 | 1 | 585 | 1 | 577 | 5.37e-163 | 482 |
| MS.gene59216.t1 | MTR_1g098870 | 45.199 | 604 | 221 | 11 | 2 | 599 | 3 | 502 | 5.62e-144 | 431 |
| MS.gene59216.t1 | MTR_2g026725 | 36.170 | 329 | 172 | 6 | 246 | 573 | 76 | 367 | 2.90e-52 | 185 |
| MS.gene59216.t1 | MTR_2g026725 | 43.820 | 89 | 47 | 2 | 59 | 145 | 261 | 348 | 2.08e-16 | 82.0 |
| MS.gene59216.t1 | MTR_1g081180 | 34.769 | 325 | 174 | 8 | 272 | 577 | 224 | 529 | 9.73e-44 | 165 |
| MS.gene59216.t1 | MTR_1g081180 | 41.000 | 100 | 56 | 2 | 49 | 145 | 407 | 506 | 2.00e-16 | 83.2 |
| MS.gene59216.t1 | MTR_1g492790 | 33.654 | 312 | 155 | 10 | 59 | 363 | 113 | 379 | 1.13e-39 | 152 |
| MS.gene59216.t1 | MTR_1g492790 | 40.541 | 111 | 62 | 3 | 450 | 557 | 94 | 203 | 7.38e-19 | 90.5 |
| MS.gene59216.t1 | MTR_1g060990 | 66.667 | 87 | 28 | 1 | 60 | 145 | 131 | 217 | 1.94e-31 | 129 |
| MS.gene59216.t1 | MTR_1g060990 | 40.602 | 133 | 65 | 5 | 460 | 590 | 122 | 242 | 9.74e-20 | 93.6 |
| MS.gene59216.t1 | MTR_1g060990 | 37.607 | 117 | 65 | 2 | 257 | 365 | 254 | 370 | 1.56e-14 | 77.0 |
| MS.gene59216.t1 | MTR_7g114860 | 44.792 | 96 | 43 | 2 | 60 | 145 | 381 | 476 | 3.86e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59216.t1 | AT1G76890 | 44.444 | 567 | 208 | 15 | 57 | 602 | 38 | 518 | 4.00e-140 | 421 |
| MS.gene59216.t1 | AT1G76880 | 53.538 | 325 | 102 | 6 | 50 | 367 | 51 | 333 | 1.30e-89 | 291 |
| MS.gene59216.t1 | AT5G03680 | 30.677 | 502 | 223 | 12 | 60 | 549 | 119 | 507 | 3.98e-57 | 203 |
| MS.gene59216.t1 | AT5G03680 | 44.944 | 89 | 47 | 2 | 468 | 555 | 119 | 206 | 8.26e-18 | 87.8 |
| MS.gene59216.t1 | AT5G28300 | 36.786 | 280 | 141 | 8 | 289 | 555 | 300 | 556 | 1.13e-45 | 172 |
| MS.gene59216.t1 | AT5G28300 | 40.385 | 104 | 51 | 2 | 53 | 145 | 452 | 555 | 6.63e-16 | 82.0 |
| MS.gene59216.t1 | AT3G10000 | 33.815 | 346 | 163 | 9 | 35 | 374 | 59 | 344 | 1.57e-42 | 160 |
| MS.gene59216.t1 | AT3G10000 | 43.434 | 99 | 55 | 1 | 460 | 557 | 80 | 178 | 7.18e-21 | 96.7 |
| MS.gene59216.t1 | AT1G33240 | 66.972 | 109 | 31 | 2 | 59 | 165 | 61 | 166 | 7.50e-40 | 155 |
| MS.gene59216.t1 | AT1G33240 | 66.972 | 109 | 31 | 2 | 59 | 165 | 61 | 166 | 2.03e-39 | 154 |
| MS.gene59216.t1 | AT3G10000 | 32.754 | 345 | 158 | 9 | 35 | 374 | 59 | 334 | 7.48e-39 | 150 |
| MS.gene59216.t1 | AT3G10000 | 40.816 | 98 | 49 | 1 | 460 | 557 | 80 | 168 | 2.90e-18 | 88.6 |
| MS.gene59216.t1 | AT5G47660 | 52.632 | 95 | 43 | 1 | 468 | 562 | 303 | 395 | 3.97e-23 | 102 |
| MS.gene59216.t1 | AT5G47660 | 41.000 | 100 | 53 | 3 | 60 | 158 | 303 | 397 | 3.18e-14 | 75.5 |
| MS.gene59216.t1 | AT1G33240 | 62.162 | 74 | 23 | 2 | 94 | 165 | 57 | 127 | 6.89e-19 | 91.3 |
| MS.gene59216.t1 | AT1G33240 | 42.529 | 87 | 49 | 1 | 60 | 145 | 396 | 482 | 4.90e-17 | 85.5 |
| MS.gene59216.t1 | AT3G25990 | 34.409 | 93 | 60 | 1 | 469 | 560 | 55 | 147 | 1.25e-11 | 67.4 |
Find 174 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGTTGCTTCTGTTAT+TGG | 0.191531 | 1.3:+67970908 | None:intergenic |
| TTTCGAGATGCAAGTGTTAA+AGG | 0.236888 | 1.3:-67972187 | MS.gene59216:CDS |
| GTAGGATTCATATTGATAAT+TGG | 0.247032 | 1.3:+67970800 | None:intergenic |
| TTTAAGCATACGATCGGATA+TGG | 0.256367 | 1.3:-67972218 | MS.gene59216:CDS |
| GGTGCAGCTGCTGCTGCTGC+TGG | 0.268164 | 1.3:+67972379 | None:intergenic |
| ACAACAATTGGTGACGAATA+TGG | 0.270177 | 1.3:-67970138 | MS.gene59216:CDS |
| TTTGGGCCCAACTTGGTTGC+CGG | 0.273463 | 1.3:+67970182 | None:intergenic |
| TCCTCCCATAGAGGACCTTT+TGG | 0.292057 | 1.3:+67969984 | None:intergenic |
| TCAGTTGGATGCTTTGTATA+AGG | 0.314622 | 1.3:-67969814 | MS.gene59216:CDS |
| GGATTTGCAGAGGAGATTCT+TGG | 0.318376 | 1.3:-67970549 | MS.gene59216:CDS |
| AGCAAAACCACCACAAATTT+CGG | 0.324820 | 1.3:-67970975 | MS.gene59216:CDS |
| GCATCCAACTGATGAAAATA+AGG | 0.337506 | 1.3:+67969825 | None:intergenic |
| GAAGTAGGGTTTGTTGTTGA+TGG | 0.341682 | 1.3:+67970746 | None:intergenic |
| AGAAGATGATGAAGAAGATA+TGG | 0.346341 | 1.3:-67969595 | MS.gene59216:CDS |
| ATGGACCAAAAGGTCCTCTA+TGG | 0.346770 | 1.3:-67969989 | MS.gene59216:CDS |
| TTAACTTGTACCACTGATAT+TGG | 0.352534 | 1.3:+67970230 | None:intergenic |
| GCAATGGCGGCCACCTCAGC+AGG | 0.356286 | 1.3:-67969694 | MS.gene59216:CDS |
| GGACATGTCTTTGAATCTTC+GGG | 0.356338 | 1.3:+67969846 | None:intergenic |
| AGGACATGTCTTTGAATCTT+CGG | 0.357417 | 1.3:+67969845 | None:intergenic |
| TCCTTCTTCCGTTGTGTCTT+CGG | 0.361358 | 1.3:+67970643 | None:intergenic |
| GAAGGATTGGATGGGATTGT+AGG | 0.364446 | 1.3:+67970782 | None:intergenic |
| CCACCTTCCGCCGTCATGTT+AGG | 0.366216 | 1.3:+67972355 | None:intergenic |
| TTGGGCCCAACTTGGTTGCC+GGG | 0.367395 | 1.3:+67970183 | None:intergenic |
| CAACGGTGCCGCCATGCTCT+CGG | 0.368345 | 1.3:+67969734 | None:intergenic |
| ATTGTTGTTGCTGGTGTTGC+GGG | 0.369324 | 1.3:+67970153 | None:intergenic |
| ACCGCCAGCACAACCACCCC+CGG | 0.371351 | 1.3:-67970201 | MS.gene59216:CDS |
| CTCGAAAGAGGAAGCGGAAA+TGG | 0.374520 | 1.3:-67970619 | MS.gene59216:CDS |
| GCGGAAGGTGGTGGTGGTGG+TGG | 0.380166 | 1.3:-67972343 | MS.gene59216:CDS |
| TCGTCACCAATTGTTGTTGC+TGG | 0.391070 | 1.3:+67970144 | None:intergenic |
| GAGCATGGCGGCACCGTTGA+TGG | 0.394589 | 1.3:-67969730 | MS.gene59216:CDS |
| AATAGATCTGTAGAAATGTT+AGG | 0.398303 | 1.3:+67970701 | None:intergenic |
| TGCTCTCGGGCTGCACCACC+TGG | 0.410175 | 1.3:+67969748 | None:intergenic |
| ACAGGAAGAAGAAGAAGATA+TGG | 0.424674 | 1.3:-67969643 | MS.gene59216:CDS |
| TGAAGAACCTCGGTTACAAT+AGG | 0.426544 | 1.3:-67969947 | MS.gene59216:CDS |
| GTAGGAGCTAGCCATGGAAT+TGG | 0.427286 | 1.3:+67970676 | None:intergenic |
| AGTGCTTGAACTTCAACTTT+CGG | 0.427969 | 1.3:+67970053 | None:intergenic |
| ACGGCGGAAGGTGGTGGTGG+TGG | 0.432204 | 1.3:-67972346 | MS.gene59216:CDS |
| ATCAGGAAGCTAGCAGAACT+TGG | 0.434480 | 1.3:-67971181 | MS.gene59216:intron |
| GGAAGAGGGTTGGTGGAAGT+AGG | 0.435197 | 1.3:+67970731 | None:intergenic |
| GAAGAGGGTTGGTGGAAGTA+GGG | 0.442303 | 1.3:+67970732 | None:intergenic |
| TAACAATGGTGAGACTTTCA+TGG | 0.445045 | 1.3:-67970099 | MS.gene59216:CDS |
| GATTCATATTGATAATTGGT+TGG | 0.446345 | 1.3:+67970804 | None:intergenic |
| AACGTAGCTTCGGTGGTAAC+CGG | 0.450832 | 1.3:-67972267 | MS.gene59216:CDS |
| TAGGGTTTGTTGTTGATGGT+TGG | 0.451052 | 1.3:+67970750 | None:intergenic |
| GTTACAATAGGAATGCAAAA+AGG | 0.452050 | 1.3:-67969935 | MS.gene59216:CDS |
| GATGCTTTGTATAAGGAGAA+AGG | 0.452352 | 1.3:-67969807 | MS.gene59216:CDS |
| ATTCATATTGATAATTGGTT+GGG | 0.453777 | 1.3:+67970805 | None:intergenic |
| TCAGAGAGTGATGTTGAAAG+AGG | 0.453881 | 1.3:-67972307 | MS.gene59216:CDS |
| AACGGTGCCGCCATGCTCTC+GGG | 0.453957 | 1.3:+67969735 | None:intergenic |
| GCAACACCAGCAACAACAAT+TGG | 0.455453 | 1.3:-67970150 | MS.gene59216:CDS |
| ATTGCGGAACAACAAAATCT+AGG | 0.456470 | 1.3:-67970371 | MS.gene59216:CDS |
| AAGTTTCTTGTCGCGGCCAC+CGG | 0.458447 | 1.3:+67972248 | None:intergenic |
| AAAAGATGGAAGAGGGTTGG+TGG | 0.469141 | 1.3:+67970724 | None:intergenic |
| GTAGAAATGTTAGGAAAAGA+TGG | 0.472744 | 1.3:+67970710 | None:intergenic |
| GTTGGTGCTACACTTCTTTG+TGG | 0.473011 | 1.3:+67970272 | None:intergenic |
| GGTGGCCGCCATTGCTGCTC+CGG | 0.473929 | 1.3:+67969702 | None:intergenic |
| CTTCTTCTTCTTCCTGTCCA+CGG | 0.478198 | 1.3:+67969649 | None:intergenic |
| AAAATAGTTGAAGGATTGGA+TGG | 0.481737 | 1.3:+67970773 | None:intergenic |
| CTTTGTGGGATGAAGTTTCA+AGG | 0.482165 | 1.3:-67972162 | MS.gene59216:intron |
| ATGACGGCGGAAGGTGGTGG+TGG | 0.488218 | 1.3:-67972349 | MS.gene59216:CDS |
| TGCATTTCTTTGAACTTCTG+TGG | 0.490979 | 1.3:+67971155 | None:intergenic |
| TTGGAAAATAGTTGAAGGAT+TGG | 0.493708 | 1.3:+67970769 | None:intergenic |
| GGTGGTGCAGCCCGAGAGCA+TGG | 0.499156 | 1.3:-67969745 | MS.gene59216:CDS |
| TGCAAAGAATCAATAGAGAG+AGG | 0.504131 | 1.3:-67970463 | MS.gene59216:CDS |
| TGGGCCCAACTTGGTTGCCG+GGG | 0.504649 | 1.3:+67970184 | None:intergenic |
| GGTTGATGTTGATGAGTTGA+AGG | 0.511906 | 1.3:+67971007 | None:intergenic |
| CAAGCTGATGCACCCACTGC+AGG | 0.513358 | 1.3:+67969531 | None:intergenic |
| TACCAAGAGAATGGACCAAA+AGG | 0.516965 | 1.3:-67969999 | MS.gene59216:CDS |
| GGGCCCAACTTGGTTGCCGG+GGG | 0.517193 | 1.3:+67970185 | None:intergenic |
| GACAACAAGTACCAAGAGAA+TGG | 0.517884 | 1.3:-67970008 | MS.gene59216:CDS |
| TGTGTTTGTTGTGGTGGCGG+TGG | 0.518161 | 1.3:+67970317 | None:intergenic |
| AATTGTTGTTGCTGGTGTTG+CGG | 0.524953 | 1.3:+67970152 | None:intergenic |
| TTGTATAAGGAGAAAGGAAA+GGG | 0.527542 | 1.3:-67969801 | MS.gene59216:CDS |
| TGGTGGTAACTTTGAGGTAG+TGG | 0.527717 | 1.3:-67969562 | MS.gene59216:CDS |
| TCCGAAGACACAACGGAAGA+AGG | 0.527908 | 1.3:-67970644 | MS.gene59216:CDS |
| TGGTTCAGCCGGAGCAGCAA+TGG | 0.533323 | 1.3:-67969710 | MS.gene59216:CDS |
| GAAAATTCTAGTGGTGGAGC+TGG | 0.535467 | 1.3:-67969777 | MS.gene59216:CDS |
| ATTGGTGCTACCGCCGGTGT+TGG | 0.539807 | 1.3:+67970248 | None:intergenic |
| TGCTCCGGCTGAACCATCAA+CGG | 0.540154 | 1.3:+67969717 | None:intergenic |
| TGTTGTGTTTGTTGTGGTGG+CGG | 0.542486 | 1.3:+67970314 | None:intergenic |
| AAGTGGTGGTGGTAACTTTG+AGG | 0.543259 | 1.3:-67969568 | MS.gene59216:CDS |
| GAAGATGGTGAACGTAGCTT+CGG | 0.543473 | 1.3:-67972277 | MS.gene59216:CDS |
| GGTTGGTATGAAAATGATCA+AGG | 0.547374 | 1.3:+67971029 | None:intergenic |
| ATGTTAGGAAAAGATGGAAG+AGG | 0.551505 | 1.3:+67970716 | None:intergenic |
| GCTACCGCCGGTGTTGGTGT+TGG | 0.551728 | 1.3:+67970254 | None:intergenic |
| GTGGCCGCGACAAGAAACTT+TGG | 0.552103 | 1.3:-67972245 | MS.gene59216:CDS |
| AAGGATCTCGAAAGAGGAAG+CGG | 0.554153 | 1.3:-67970625 | MS.gene59216:CDS |
| TGGTGGAGCTGGTTCGAACC+AGG | 0.556702 | 1.3:-67969766 | MS.gene59216:CDS |
| TGTTGTTGTGTTTGTTGTGG+TGG | 0.557187 | 1.3:+67970311 | None:intergenic |
| AGGAAAAGATGGAAGAGGGT+TGG | 0.558092 | 1.3:+67970721 | None:intergenic |
| TGTTGTTGTTGTGTTTGTTG+TGG | 0.560673 | 1.3:+67970308 | None:intergenic |
| CAAGTGTTAAAGGTCCTTTG+TGG | 0.560707 | 1.3:-67972177 | MS.gene59216:CDS |
| GGCACCGTTGATGGTTCAGC+CGG | 0.560808 | 1.3:-67969721 | MS.gene59216:CDS |
| CCACCTAACATGACGGCGGA+AGG | 0.561648 | 1.3:-67972358 | MS.gene59216:CDS |
| TTCAGCCGGAGCAGCAATGG+CGG | 0.565524 | 1.3:-67969707 | MS.gene59216:CDS |
| CGGAAGAAGGATCTCGAAAG+AGG | 0.566261 | 1.3:-67970631 | MS.gene59216:CDS |
| TTTGTATAAGGAGAAAGGAA+AGG | 0.568622 | 1.3:-67969802 | MS.gene59216:CDS |
| GATGGTTGGAAAATAGTTGA+AGG | 0.571791 | 1.3:+67970764 | None:intergenic |
| GGTGCTACACTTCTTTGTGG+TGG | 0.573648 | 1.3:+67970275 | None:intergenic |
| GATGGTGAACGTAGCTTCGG+TGG | 0.573832 | 1.3:-67972274 | MS.gene59216:CDS |
| GAAAGTGACAGAGAAGCAAG+AGG | 0.574790 | 1.3:-67970570 | MS.gene59216:CDS |
| CATGGAGCAGAACCGTGGAC+AGG | 0.575210 | 1.3:-67969661 | MS.gene59216:CDS |
| AAAGATATCTCCTCCCATAG+AGG | 0.576930 | 1.3:+67969975 | None:intergenic |
| TTTGCAGAGGAGATTCTTGG+AGG | 0.578270 | 1.3:-67970546 | MS.gene59216:CDS |
| AAAATAAGAGAAACTATGCT+AGG | 0.578777 | 1.3:-67972439 | None:intergenic |
| TTGCATTCCTATTGTAACCG+AGG | 0.579636 | 1.3:+67969940 | None:intergenic |
| GAAAGAGGAAGAGTTGAAGA+TGG | 0.580801 | 1.3:-67972292 | MS.gene59216:CDS |
| AGCGCCAAAGTTTCTTGTCG+CGG | 0.581032 | 1.3:+67972241 | None:intergenic |
| ATGTTGATGAGTTGAAGGGT+TGG | 0.585562 | 1.3:+67971012 | None:intergenic |
| AACAATGGTGAGACTTTCAT+GGG | 0.588661 | 1.3:-67970098 | MS.gene59216:CDS |
| GGTCATTGAGAAACGCGAGC+AGG | 0.589179 | 1.3:-67970525 | MS.gene59216:CDS |
| AAAGAGGAAGCGGAAATGGA+AGG | 0.590185 | 1.3:-67970615 | MS.gene59216:CDS |
| AGATCTATTATCCAATTCCA+TGG | 0.590202 | 1.3:-67970687 | MS.gene59216:CDS |
| GAAGAAGATATGGATGAAAG+TGG | 0.590417 | 1.3:-67969585 | MS.gene59216:CDS |
| AAGTGTTAAAGGTCCTTTGT+GGG | 0.591969 | 1.3:-67972176 | MS.gene59216:CDS |
| ACTGATATTGGTGCTACCGC+CGG | 0.592470 | 1.3:+67970242 | None:intergenic |
| TATCACAAGAGAACCAAAGA+TGG | 0.592914 | 1.3:-67971106 | MS.gene59216:CDS |
| AAATAGTTGAAGGATTGGAT+GGG | 0.593793 | 1.3:+67970774 | None:intergenic |
| TGGACCAAAAGGTCCTCTAT+GGG | 0.594236 | 1.3:-67969988 | MS.gene59216:CDS |
| GCAAAGAATCAATAGAGAGA+GGG | 0.595028 | 1.3:-67970462 | MS.gene59216:CDS |
| TGTTAGGAAAAGATGGAAGA+GGG | 0.595844 | 1.3:+67970717 | None:intergenic |
| ATGTTATCTTCTCCCTGCTG+AGG | 0.596975 | 1.3:+67969681 | None:intergenic |
| ATGGTGAGACTTTCATGGGA+GGG | 0.597885 | 1.3:-67970094 | MS.gene59216:CDS |
| CCTTCCGCCGTCATGTTAGG+TGG | 0.598899 | 1.3:+67972358 | None:intergenic |
| GGTGTTGGTGCCGAAATTTG+TGG | 0.601888 | 1.3:+67970965 | None:intergenic |
| TGTAGCACCAACACCAACAC+CGG | 0.603439 | 1.3:-67970261 | MS.gene59216:CDS |
| AGAAGCAACAATGTCACAAG+TGG | 0.606912 | 1.3:-67970900 | MS.gene59216:CDS |
| GATATGGATGAAAGTGGTGG+TGG | 0.607189 | 1.3:-67969579 | MS.gene59216:CDS |
| GGCCGAGGTGGAAAATCAGA+TGG | 0.609437 | 1.3:-67971085 | MS.gene59216:CDS |
| AGTGGCAAACAAACCTGCAG+TGG | 0.609531 | 1.3:-67969544 | MS.gene59216:CDS |
| AGAACCAAAGATGGCCGAGG+TGG | 0.611661 | 1.3:-67971097 | MS.gene59216:CDS |
| AACATGACGGCGGAAGGTGG+TGG | 0.613643 | 1.3:-67972352 | MS.gene59216:CDS |
| ATGGATGAAGATGATAAAGA+TGG | 0.614880 | 1.3:-67969624 | MS.gene59216:CDS |
| AAGAGAACCAAAGATGGCCG+AGG | 0.615515 | 1.3:-67971100 | MS.gene59216:CDS |
| AGCTGCACCACCTAACATGA+CGG | 0.617434 | 1.3:-67972365 | MS.gene59216:CDS |
| GATCAATCTGAGGACGAGCA+TGG | 0.620236 | 1.3:-67970030 | MS.gene59216:CDS |
| CCTAACATGACGGCGGAAGG+TGG | 0.623080 | 1.3:-67972355 | MS.gene59216:CDS |
| TCAGGAAGCTAGCAGAACTT+GGG | 0.624015 | 1.3:-67971180 | MS.gene59216:intron |
| CAATGGCGGCCACCTCAGCA+GGG | 0.624870 | 1.3:-67969693 | MS.gene59216:CDS |
| GTTGATGTTGATGAGTTGAA+GGG | 0.625077 | 1.3:+67971008 | None:intergenic |
| GTTGGTATGAAAATGATCAA+GGG | 0.626104 | 1.3:+67971030 | None:intergenic |
| TTATCTTCTCCCTGCTGAGG+TGG | 0.627005 | 1.3:+67969684 | None:intergenic |
| AAGGGAGAAAATTCTAGTGG+TGG | 0.630570 | 1.3:-67969783 | MS.gene59216:CDS |
| GTCTTCGGAAGACGTCGAGT+AGG | 0.632078 | 1.3:+67970658 | None:intergenic |
| TCTTTAGCAATGAAGAACCT+CGG | 0.632836 | 1.3:-67969957 | MS.gene59216:CDS |
| AGAAGCAAGAGGATTTGCAG+AGG | 0.635450 | 1.3:-67970559 | MS.gene59216:CDS |
| GTAGCTTCGGTGGTAACCGG+TGG | 0.643526 | 1.3:-67972264 | MS.gene59216:CDS |
| GACGTCTTCCGAAGACACAA+CGG | 0.647187 | 1.3:-67970651 | MS.gene59216:CDS |
| TGAAGATGATAAAGATGGTG+AGG | 0.649200 | 1.3:-67969619 | MS.gene59216:CDS |
| GTAACAACTTGTGACGGTGT+TGG | 0.650468 | 1.3:+67970950 | None:intergenic |
| GTTGGTGCCGAAATTTGTGG+TGG | 0.654114 | 1.3:+67970968 | None:intergenic |
| TTCAAGCACTGATCAATCTG+AGG | 0.656376 | 1.3:-67970040 | MS.gene59216:CDS |
| TGCATGAGGGATACTTAGAG+TGG | 0.657060 | 1.3:+67970871 | None:intergenic |
| GGAAAGGGAGAAAATTCTAG+TGG | 0.661145 | 1.3:-67969786 | MS.gene59216:CDS |
| GTGGCAAACAAACCTGCAGT+GGG | 0.663059 | 1.3:-67969543 | MS.gene59216:CDS |
| CGTCGAGTAGGAGCTAGCCA+TGG | 0.663851 | 1.3:+67970670 | None:intergenic |
| ACCAAAAGGTCCTCTATGGG+AGG | 0.664112 | 1.3:-67969985 | MS.gene59216:CDS |
| TCAGCAGGGAGAAGATAACA+TGG | 0.666074 | 1.3:-67969679 | MS.gene59216:CDS |
| TTGATGGAACAGTTGCATGA+GGG | 0.669086 | 1.3:+67970858 | None:intergenic |
| GAGTTGTTAGAGAAGAAGCG+TGG | 0.669199 | 1.3:-67970499 | MS.gene59216:CDS |
| TGGGAGGGATGAGTTCGTCA+AGG | 0.669391 | 1.3:-67970079 | MS.gene59216:CDS |
| ATTGATGGAACAGTTGCATG+AGG | 0.676758 | 1.3:+67970857 | None:intergenic |
| GCAGTTGTAACAACTTGTGA+CGG | 0.679663 | 1.3:+67970944 | None:intergenic |
| GATAACATGGAGCAGAACCG+TGG | 0.681082 | 1.3:-67969666 | MS.gene59216:CDS |
| ATTGTGAAAGTTGATAACAA+TGG | 0.690514 | 1.3:-67970113 | MS.gene59216:CDS |
| AATGGTGAGACTTTCATGGG+AGG | 0.694246 | 1.3:-67970095 | MS.gene59216:CDS |
| CTTGAAACTTCATCCCACAA+AGG | 0.698850 | 1.3:+67972163 | None:intergenic |
| GGCGGTAGCACCAATATCAG+TGG | 0.699903 | 1.3:-67970240 | MS.gene59216:CDS |
| GAGGGATGAGTTCGTCAAGG+TGG | 0.700639 | 1.3:-67970076 | MS.gene59216:CDS |
| TGGAGCTGGTTCGAACCAGG+TGG | 0.701524 | 1.3:-67969763 | MS.gene59216:CDS |
| TGCACCACCTAACATGACGG+CGG | 0.703359 | 1.3:-67972362 | MS.gene59216:CDS |
| AGCACCAACACCAACACCGG+CGG | 0.703596 | 1.3:-67970258 | MS.gene59216:CDS |
| GGTGCAGCCCGAGAGCATGG+CGG | 0.703630 | 1.3:-67969742 | MS.gene59216:CDS |
| GAAGATATGGATGAAAGTGG+TGG | 0.720036 | 1.3:-67969582 | MS.gene59216:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAATAAATTAGAAA+AGG | + | chr1.3:67970096-67970115 | None:intergenic | 10.0% |
| !!! | TTACAAAAATTTAGTTTATT+TGG | - | chr1.3:67969865-67969884 | MS.gene59216:CDS | 10.0% |
| !! | AAAAAATAAATTAGAAAAGG+AGG | + | chr1.3:67970093-67970112 | None:intergenic | 15.0% |
| !! | ATAAACAAGAAATAAAAACA+TGG | + | chr1.3:67970591-67970610 | None:intergenic | 15.0% |
| !! | ATAATTAAAGTAGTGTTAAT+TGG | + | chr1.3:67970533-67970552 | None:intergenic | 15.0% |
| !! | TAAACAAGAAATAAAAACAT+GGG | + | chr1.3:67970590-67970609 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTTCATTGCTTT+TGG | - | chr1.3:67970102-67970121 | MS.gene59216:CDS | 15.0% |
| !! | AAAGTAACTGAAATAGATAA+AGG | + | chr1.3:67970488-67970507 | None:intergenic | 20.0% |
| !! | ACAAATGCATGATATAAAAA+AGG | + | chr1.3:67970651-67970670 | None:intergenic | 20.0% |
| !! | TCTCACTTTAATTATTAATC+AGG | - | chr1.3:67970756-67970775 | MS.gene59216:CDS | 20.0% |
| !!! | ATTCATATTGATAATTGGTT+GGG | + | chr1.3:67971152-67971171 | None:intergenic | 20.0% |
| ! | AATACAAAAGACTAAGAAAC+CGG | + | chr1.3:67970051-67970070 | None:intergenic | 25.0% |
| ! | AATAGATCTGTAGAAATGTT+AGG | + | chr1.3:67971256-67971275 | None:intergenic | 25.0% |
| ! | ATGTGAAGTCTATATGATTT+GGG | - | chr1.3:67970173-67970192 | MS.gene59216:CDS | 25.0% |
| !! | AAAAAGGTGCAAAGAAAAAT+GGG | - | chr1.3:67972035-67972054 | MS.gene59216:intron | 25.0% |
| !! | ATTAGAAAAGGAGGATTTTA+TGG | + | chr1.3:67970084-67970103 | None:intergenic | 25.0% |
| !! | CATTTCTTTTCATCAATTCA+TGG | - | chr1.3:67970399-67970418 | MS.gene59216:CDS | 25.0% |
| !! | GATTCATATTGATAATTGGT+TGG | + | chr1.3:67971153-67971172 | None:intergenic | 25.0% |
| !! | GTAGGATTCATATTGATAAT+TGG | + | chr1.3:67971157-67971176 | None:intergenic | 25.0% |
| !! | TTTGATAACTCAATTCAAGT+TGG | + | chr1.3:67970268-67970287 | None:intergenic | 25.0% |
| !!! | ATTCAAGTTGGTAACTTATT+TGG | + | chr1.3:67970256-67970275 | None:intergenic | 25.0% |
| !!! | ATTGTGAAAGTTGATAACAA+TGG | - | chr1.3:67971841-67971860 | MS.gene59216:intron | 25.0% |
| !!! | TATTTTTTCATTGCTTTTGG+TGG | - | chr1.3:67970105-67970124 | MS.gene59216:CDS | 25.0% |
| AAAATAGTTGAAGGATTGGA+TGG | + | chr1.3:67971184-67971203 | None:intergenic | 30.0% | |
| AAAATGCATGAACTGAAGTT+AGG | + | chr1.3:67970369-67970388 | None:intergenic | 30.0% | |
| AAATAGTTGAAGGATTGGAT+GGG | + | chr1.3:67971183-67971202 | None:intergenic | 30.0% | |
| AAGAAGCAAAAACCAAATGA+TGG | + | chr1.3:67970025-67970044 | None:intergenic | 30.0% | |
| AAGTAGTGTTAATTGGATCA+TGG | + | chr1.3:67970526-67970545 | None:intergenic | 30.0% | |
| AGAAGATGATGAAGAAGATA+TGG | - | chr1.3:67972359-67972378 | MS.gene59216:CDS | 30.0% | |
| AGATCTATTATCCAATTCCA+TGG | - | chr1.3:67971267-67971286 | MS.gene59216:intron | 30.0% | |
| ATGGATGAAGATGATAAAGA+TGG | - | chr1.3:67972330-67972349 | MS.gene59216:CDS | 30.0% | |
| GATGTGAAGTCTATATGATT+TGG | - | chr1.3:67970172-67970191 | MS.gene59216:CDS | 30.0% | |
| GTAGAAATGTTAGGAAAAGA+TGG | + | chr1.3:67971247-67971266 | None:intergenic | 30.0% | |
| GTCTTTCTTGCAAAAAATTG+CGG | - | chr1.3:67971567-67971586 | MS.gene59216:intron | 30.0% | |
| GTTACAATAGGAATGCAAAA+AGG | - | chr1.3:67972019-67972038 | MS.gene59216:intron | 30.0% | |
| GTTGGTATGAAAATGATCAA+GGG | + | chr1.3:67970927-67970946 | None:intergenic | 30.0% | |
| TTGGAAAATAGTTGAAGGAT+TGG | + | chr1.3:67971188-67971207 | None:intergenic | 30.0% | |
| TTGTATAAGGAGAAAGGAAA+GGG | - | chr1.3:67972153-67972172 | MS.gene59216:intron | 30.0% | |
| TTTGTATAAGGAGAAAGGAA+AGG | - | chr1.3:67972152-67972171 | MS.gene59216:intron | 30.0% | |
| ! | CAAAAAGGTGCAAAGAAAAA+TGG | - | chr1.3:67972034-67972053 | MS.gene59216:intron | 30.0% |
| ! | TCAGTTCATGCATTTTTCAT+GGG | - | chr1.3:67970373-67970392 | MS.gene59216:CDS | 30.0% |
| ! | TTCAGTTCATGCATTTTTCA+TGG | - | chr1.3:67970372-67970391 | MS.gene59216:CDS | 30.0% |
| !! | AGTTGGTAACCGAAATAAAA+GGG | + | chr1.3:67970309-67970328 | None:intergenic | 30.0% |
| !! | GTAGTTGCAATATTGTTTTG+AGG | + | chr1.3:67971130-67971149 | None:intergenic | 30.0% |
| !! | TTAACTTGTACCACTGATAT+TGG | + | chr1.3:67971727-67971746 | None:intergenic | 30.0% |
| !! | TTGGTTTTTGCTTCTTTTTC+CGG | - | chr1.3:67970029-67970048 | MS.gene59216:CDS | 30.0% |
| !!! | ATGTCCTTATTTTCATCAGT+TGG | - | chr1.3:67972125-67972144 | MS.gene59216:intron | 30.0% |
| !!! | TTTTGAGGCATTGAAATTGA+TGG | + | chr1.3:67971115-67971134 | None:intergenic | 30.0% |
| AACAATGGTGAGACTTTCAT+GGG | - | chr1.3:67971856-67971875 | MS.gene59216:intron | 35.0% | |
| AAGTGTTAAAGGTCCTTTGT+GGG | - | chr1.3:67969778-67969797 | MS.gene59216:CDS | 35.0% | |
| AATTGGATCATGGAAATGCA+AGG | + | chr1.3:67970516-67970535 | None:intergenic | 35.0% | |
| ACAGGAAGAAGAAGAAGATA+TGG | - | chr1.3:67972311-67972330 | MS.gene59216:CDS | 35.0% | |
| AGCAAAACCACCACAAATTT+CGG | - | chr1.3:67970979-67970998 | MS.gene59216:CDS | 35.0% | |
| AGGACATGTCTTTGAATCTT+CGG | + | chr1.3:67972112-67972131 | None:intergenic | 35.0% | |
| AGTGCTTGAACTTCAACTTT+CGG | + | chr1.3:67971904-67971923 | None:intergenic | 35.0% | |
| ATGTTAGGAAAAGATGGAAG+AGG | + | chr1.3:67971241-67971260 | None:intergenic | 35.0% | |
| ATTCATGTGATGTAGAGATC+TGG | - | chr1.3:67969978-67969997 | MS.gene59216:CDS | 35.0% | |
| ATTGCGGAACAACAAAATCT+AGG | - | chr1.3:67971583-67971602 | MS.gene59216:intron | 35.0% | |
| GAAGAAGATATGGATGAAAG+TGG | - | chr1.3:67972369-67972388 | MS.gene59216:CDS | 35.0% | |
| GATGCTTTGTATAAGGAGAA+AGG | - | chr1.3:67972147-67972166 | MS.gene59216:intron | 35.0% | |
| GATGGTTGGAAAATAGTTGA+AGG | + | chr1.3:67971193-67971212 | None:intergenic | 35.0% | |
| GCAAAGAATCAATAGAGAGA+GGG | - | chr1.3:67971492-67971511 | MS.gene59216:intron | 35.0% | |
| GCATCCAACTGATGAAAATA+AGG | + | chr1.3:67972132-67972151 | None:intergenic | 35.0% | |
| TAACAATGGTGAGACTTTCA+TGG | - | chr1.3:67971855-67971874 | MS.gene59216:intron | 35.0% | |
| TATCACAAGAGAACCAAAGA+TGG | - | chr1.3:67970848-67970867 | MS.gene59216:CDS | 35.0% | |
| TCAGTTGGATGCTTTGTATA+AGG | - | chr1.3:67972140-67972159 | MS.gene59216:intron | 35.0% | |
| TCTTTAGCAATGAAGAACCT+CGG | - | chr1.3:67971997-67972016 | MS.gene59216:intron | 35.0% | |
| TGAAGATGATAAAGATGGTG+AGG | - | chr1.3:67972335-67972354 | MS.gene59216:CDS | 35.0% | |
| TGCAAAGAATCAATAGAGAG+AGG | - | chr1.3:67971491-67971510 | MS.gene59216:intron | 35.0% | |
| TGCATTTCTTTGAACTTCTG+TGG | + | chr1.3:67970802-67970821 | None:intergenic | 35.0% | |
| TGTTAGGAAAAGATGGAAGA+GGG | + | chr1.3:67971240-67971259 | None:intergenic | 35.0% | |
| TTCATGTGATGTAGAGATCT+GGG | - | chr1.3:67969979-67969998 | MS.gene59216:CDS | 35.0% | |
| TTTAAGCATACGATCGGATA+TGG | - | chr1.3:67969736-67969755 | MS.gene59216:CDS | 35.0% | |
| TTTCGAGATGCAAGTGTTAA+AGG | - | chr1.3:67969767-67969786 | MS.gene59216:CDS | 35.0% | |
| ! | GACATTGTTGCTTCTGTTAT+TGG | + | chr1.3:67971049-67971068 | None:intergenic | 35.0% |
| ! | GGTTGGTATGAAAATGATCA+AGG | + | chr1.3:67970928-67970947 | None:intergenic | 35.0% |
| ! | GTTGATGTTGATGAGTTGAA+GGG | + | chr1.3:67970949-67970968 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTGTGTTTGTTG+TGG | + | chr1.3:67971649-67971668 | None:intergenic | 35.0% |
| ! | TTGGTAACCGAAATAAAAGG+GGG | + | chr1.3:67970307-67970326 | None:intergenic | 35.0% |
| !! | ACAACAATTGGTGACGAATA+TGG | - | chr1.3:67971816-67971835 | MS.gene59216:intron | 35.0% |
| !! | GAGTTGGTAACCGAAATAAA+AGG | + | chr1.3:67970310-67970329 | None:intergenic | 35.0% |
| !! | GTTGGTAACCGAAATAAAAG+GGG | + | chr1.3:67970308-67970327 | None:intergenic | 35.0% |
| !! | TTCTTTCCCCCCTTTTATTT+CGG | - | chr1.3:67970297-67970316 | MS.gene59216:CDS | 35.0% |
| AAAGATATCTCCTCCCATAG+AGG | + | chr1.3:67971982-67972001 | None:intergenic | 40.0% | |
| AAGGGAGAAAATTCTAGTGG+TGG | - | chr1.3:67972171-67972190 | MS.gene59216:CDS | 40.0% | |
| AGAAGCAACAATGTCACAAG+TGG | - | chr1.3:67971054-67971073 | MS.gene59216:CDS | 40.0% | |
| ATTGATGGAACAGTTGCATG+AGG | + | chr1.3:67971100-67971119 | None:intergenic | 40.0% | |
| ATTTCGGTTACCAACTCTCA+TGG | - | chr1.3:67970313-67970332 | MS.gene59216:CDS | 40.0% | |
| CAAGTGTTAAAGGTCCTTTG+TGG | - | chr1.3:67969777-67969796 | MS.gene59216:CDS | 40.0% | |
| CTTCAATTTCCCATGAGAGT+TGG | + | chr1.3:67970326-67970345 | None:intergenic | 40.0% | |
| CTTGAAACTTCATCCCACAA+AGG | + | chr1.3:67969794-67969813 | None:intergenic | 40.0% | |
| CTTGCTTCAACTCCATCATT+TGG | - | chr1.3:67970010-67970029 | MS.gene59216:CDS | 40.0% | |
| CTTTGTGGGATGAAGTTTCA+AGG | - | chr1.3:67969792-67969811 | MS.gene59216:CDS | 40.0% | |
| GAAAGAGGAAGAGTTGAAGA+TGG | - | chr1.3:67969662-67969681 | MS.gene59216:CDS | 40.0% | |
| GAAGATATGGATGAAAGTGG+TGG | - | chr1.3:67972372-67972391 | MS.gene59216:CDS | 40.0% | |
| GACAACAAGTACCAAGAGAA+TGG | - | chr1.3:67971946-67971965 | MS.gene59216:intron | 40.0% | |
| GCAGTTGTAACAACTTGTGA+CGG | + | chr1.3:67971013-67971032 | None:intergenic | 40.0% | |
| GGAAAGGGAGAAAATTCTAG+TGG | - | chr1.3:67972168-67972187 | MS.gene59216:CDS | 40.0% | |
| GGACATGTCTTTGAATCTTC+GGG | + | chr1.3:67972111-67972130 | None:intergenic | 40.0% | |
| TACCAAGAGAATGGACCAAA+AGG | - | chr1.3:67971955-67971974 | MS.gene59216:intron | 40.0% | |
| TCAGAGAGTGATGTTGAAAG+AGG | - | chr1.3:67969647-67969666 | MS.gene59216:CDS | 40.0% | |
| TGAAGAACCTCGGTTACAAT+AGG | - | chr1.3:67972007-67972026 | MS.gene59216:intron | 40.0% | |
| TGGTAACCGAAATAAAAGGG+GGG | + | chr1.3:67970306-67970325 | None:intergenic | 40.0% | |
| TTGATGGAACAGTTGCATGA+GGG | + | chr1.3:67971099-67971118 | None:intergenic | 40.0% | |
| TTGCATTCCTATTGTAACCG+AGG | + | chr1.3:67972017-67972036 | None:intergenic | 40.0% | |
| TTTCGGTTACCAACTCTCAT+GGG | - | chr1.3:67970314-67970333 | MS.gene59216:CDS | 40.0% | |
| ! | AATTGTTGTTGCTGGTGTTG+CGG | + | chr1.3:67971805-67971824 | None:intergenic | 40.0% |
| ! | ATGTTGATGAGTTGAAGGGT+TGG | + | chr1.3:67970945-67970964 | None:intergenic | 40.0% |
| ! | GGTTGATGTTGATGAGTTGA+AGG | + | chr1.3:67970950-67970969 | None:intergenic | 40.0% |
| ! | TACCATCTGATTTTCCACCT+CGG | + | chr1.3:67970874-67970893 | None:intergenic | 40.0% |
| !! | GAAGTAGGGTTTGTTGTTGA+TGG | + | chr1.3:67971211-67971230 | None:intergenic | 40.0% |
| !! | GGTGGTTTTGCTATGTTTTG+AGG | + | chr1.3:67970971-67970990 | None:intergenic | 40.0% |
| !! | TAGGGTTTGTTGTTGATGGT+TGG | + | chr1.3:67971207-67971226 | None:intergenic | 40.0% |
| !! | TGTTGTTGTGTTTGTTGTGG+TGG | + | chr1.3:67971646-67971665 | None:intergenic | 40.0% |
| !! | TTCAAGCACTGATCAATCTG+AGG | - | chr1.3:67971914-67971933 | MS.gene59216:intron | 40.0% |
| AAAAGATGGAAGAGGGTTGG+TGG | + | chr1.3:67971233-67971252 | None:intergenic | 45.0% | |
| AAAGAGGAAGCGGAAATGGA+AGG | - | chr1.3:67971339-67971358 | MS.gene59216:intron | 45.0% | |
| AAGGATCTCGAAAGAGGAAG+CGG | - | chr1.3:67971329-67971348 | MS.gene59216:intron | 45.0% | |
| AATGGTGAGACTTTCATGGG+AGG | - | chr1.3:67971859-67971878 | MS.gene59216:intron | 45.0% | |
| AGAAGCAAGAGGATTTGCAG+AGG | - | chr1.3:67971395-67971414 | MS.gene59216:intron | 45.0% | |
| AGGAAAAGATGGAAGAGGGT+TGG | + | chr1.3:67971236-67971255 | None:intergenic | 45.0% | |
| ATCAGGAAGCTAGCAGAACT+TGG | - | chr1.3:67970773-67970792 | MS.gene59216:CDS | 45.0% | |
| ATGGACCAAAAGGTCCTCTA+TGG | - | chr1.3:67971965-67971984 | MS.gene59216:intron | 45.0% | |
| ATGGTGAGACTTTCATGGGA+GGG | - | chr1.3:67971860-67971879 | MS.gene59216:intron | 45.0% | |
| ATGTTATCTTCTCCCTGCTG+AGG | + | chr1.3:67972276-67972295 | None:intergenic | 45.0% | |
| CTTCTTCTTCTTCCTGTCCA+CGG | + | chr1.3:67972308-67972327 | None:intergenic | 45.0% | |
| GAAAGTGACAGAGAAGCAAG+AGG | - | chr1.3:67971384-67971403 | MS.gene59216:intron | 45.0% | |
| GAAGATGGTGAACGTAGCTT+CGG | - | chr1.3:67969677-67969696 | MS.gene59216:CDS | 45.0% | |
| GAAGGATTGGATGGGATTGT+AGG | + | chr1.3:67971175-67971194 | None:intergenic | 45.0% | |
| GAGTTGTTAGAGAAGAAGCG+TGG | - | chr1.3:67971455-67971474 | MS.gene59216:intron | 45.0% | |
| GATATGGATGAAAGTGGTGG+TGG | - | chr1.3:67972375-67972394 | MS.gene59216:CDS | 45.0% | |
| GCAACACCAGCAACAACAAT+TGG | - | chr1.3:67971804-67971823 | MS.gene59216:intron | 45.0% | |
| GGATTTGCAGAGGAGATTCT+TGG | - | chr1.3:67971405-67971424 | MS.gene59216:intron | 45.0% | |
| GTAACAACTTGTGACGGTGT+TGG | + | chr1.3:67971007-67971026 | None:intergenic | 45.0% | |
| TCAGCAGGGAGAAGATAACA+TGG | - | chr1.3:67972275-67972294 | MS.gene59216:CDS | 45.0% | |
| TCAGGAAGCTAGCAGAACTT+GGG | - | chr1.3:67970774-67970793 | MS.gene59216:CDS | 45.0% | |
| TCCTTCTTCCGTTGTGTCTT+CGG | + | chr1.3:67971314-67971333 | None:intergenic | 45.0% | |
| TGCATGAGGGATACTTAGAG+TGG | + | chr1.3:67971086-67971105 | None:intergenic | 45.0% | |
| TGGACCAAAAGGTCCTCTAT+GGG | - | chr1.3:67971966-67971985 | MS.gene59216:intron | 45.0% | |
| TTTGCAGAGGAGATTCTTGG+AGG | - | chr1.3:67971408-67971427 | MS.gene59216:intron | 45.0% | |
| ! | GAAAATTCTAGTGGTGGAGC+TGG | - | chr1.3:67972177-67972196 | MS.gene59216:CDS | 45.0% |
| ! | GACCTTTTGGTCCATTCTCT+TGG | + | chr1.3:67971960-67971979 | None:intergenic | 45.0% |
| ! | GGCGCTTTTAAGCATACGAT+CGG | - | chr1.3:67969730-67969749 | MS.gene59216:CDS | 45.0% |
| ! | TCGTCACCAATTGTTGTTGC+TGG | + | chr1.3:67971813-67971832 | None:intergenic | 45.0% |
| !! | AAGTGGTGGTGGTAACTTTG+AGG | - | chr1.3:67972386-67972405 | MS.gene59216:CDS | 45.0% |
| !! | ATTGTTGTTGCTGGTGTTGC+GGG | + | chr1.3:67971804-67971823 | None:intergenic | 45.0% |
| !! | GACTCAGCTGTTTTAAGTGG+TGG | - | chr1.3:67969539-67969558 | MS.gene59216:CDS | 45.0% |
| !! | GGTGACTCAGCTGTTTTAAG+TGG | - | chr1.3:67969536-67969555 | MS.gene59216:CDS | 45.0% |
| !! | GGTGTTGCGGGACTATTTTT+GGG | + | chr1.3:67971792-67971811 | None:intergenic | 45.0% |
| !! | GTTGGTGCTACACTTCTTTG+TGG | + | chr1.3:67971685-67971704 | None:intergenic | 45.0% |
| !! | TCAGCTGTTTTAAGTGGTGG+CGG | - | chr1.3:67969542-67969561 | MS.gene59216:CDS | 45.0% |
| !! | TGGTGGTAACTTTGAGGTAG+TGG | - | chr1.3:67972392-67972411 | MS.gene59216:CDS | 45.0% |
| !! | TGTTGTGTTTGTTGTGGTGG+CGG | + | chr1.3:67971643-67971662 | None:intergenic | 45.0% |
| !!! | GACTATTTTTGGGCCCAACT+TGG | + | chr1.3:67971782-67971801 | None:intergenic | 45.0% |
| !!! | TGGTGTTGCGGGACTATTTT+TGG | + | chr1.3:67971793-67971812 | None:intergenic | 45.0% |
| !!! | TTTACTTTTTTTTTTTTTTT+TGG | - | chr1.3:67970724-67970743 | MS.gene59216:CDS | 5.0% |
| AACGTAGCTTCGGTGGTAAC+CGG | - | chr1.3:67969687-67969706 | MS.gene59216:CDS | 50.0% | |
| AAGAGAACCAAAGATGGCCG+AGG | - | chr1.3:67970854-67970873 | MS.gene59216:CDS | 50.0% | |
| ACCAAAAGGTCCTCTATGGG+AGG | - | chr1.3:67971969-67971988 | MS.gene59216:intron | 50.0% | |
| AGCGCCAAAGTTTCTTGTCG+CGG | + | chr1.3:67969716-67969735 | None:intergenic | 50.0% | |
| AGCTGCACCACCTAACATGA+CGG | - | chr1.3:67969589-67969608 | MS.gene59216:CDS | 50.0% | |
| AGTGGCAAACAAACCTGCAG+TGG | - | chr1.3:67972410-67972429 | MS.gene59216:CDS | 50.0% | |
| CGGAAGAAGGATCTCGAAAG+AGG | - | chr1.3:67971323-67971342 | MS.gene59216:intron | 50.0% | |
| CTCGAAAGAGGAAGCGGAAA+TGG | - | chr1.3:67971335-67971354 | MS.gene59216:intron | 50.0% | |
| GACGTCTTCCGAAGACACAA+CGG | - | chr1.3:67971303-67971322 | MS.gene59216:intron | 50.0% | |
| GATAACATGGAGCAGAACCG+TGG | - | chr1.3:67972288-67972307 | MS.gene59216:CDS | 50.0% | |
| GATCAATCTGAGGACGAGCA+TGG | - | chr1.3:67971924-67971943 | MS.gene59216:intron | 50.0% | |
| GTAGGAGCTAGCCATGGAAT+TGG | + | chr1.3:67971281-67971300 | None:intergenic | 50.0% | |
| GTGGCAAACAAACCTGCAGT+GGG | - | chr1.3:67972411-67972430 | MS.gene59216:CDS | 50.0% | |
| TCCGAAGACACAACGGAAGA+AGG | - | chr1.3:67971310-67971329 | MS.gene59216:intron | 50.0% | |
| TGTAGCACCAACACCAACAC+CGG | - | chr1.3:67971693-67971712 | MS.gene59216:intron | 50.0% | |
| TTATCTTCTCCCTGCTGAGG+TGG | + | chr1.3:67972273-67972292 | None:intergenic | 50.0% | |
| ! | GGTGCTACACTTCTTTGTGG+TGG | + | chr1.3:67971682-67971701 | None:intergenic | 50.0% |
| ! | TCCTCCCATAGAGGACCTTT+TGG | + | chr1.3:67971973-67971992 | None:intergenic | 50.0% |
| ! | TTTTCCACCTCGGCCATCTT+TGG | + | chr1.3:67970864-67970883 | None:intergenic | 50.0% |
| !! | ACTGATATTGGTGCTACCGC+CGG | + | chr1.3:67971715-67971734 | None:intergenic | 50.0% |
| !! | GAAGAGGGTTGGTGGAAGTA+GGG | + | chr1.3:67971225-67971244 | None:intergenic | 50.0% |
| !! | GGTGTTGGTGCCGAAATTTG+TGG | + | chr1.3:67970992-67971011 | None:intergenic | 50.0% |
| !! | GTTGGTGCCGAAATTTGTGG+TGG | + | chr1.3:67970989-67971008 | None:intergenic | 50.0% |
| AAGTTTCTTGTCGCGGCCAC+CGG | + | chr1.3:67969709-67969728 | None:intergenic | 55.0% | |
| AGAACCAAAGATGGCCGAGG+TGG | - | chr1.3:67970857-67970876 | MS.gene59216:CDS | 55.0% | |
| GAGGGATGAGTTCGTCAAGG+TGG | - | chr1.3:67971878-67971897 | MS.gene59216:intron | 55.0% | |
| GATGGTGAACGTAGCTTCGG+TGG | - | chr1.3:67969680-67969699 | MS.gene59216:CDS | 55.0% | |
| GGCCGAGGTGGAAAATCAGA+TGG | - | chr1.3:67970869-67970888 | MS.gene59216:CDS | 55.0% | |
| GGCGGTAGCACCAATATCAG+TGG | - | chr1.3:67971714-67971733 | MS.gene59216:intron | 55.0% | |
| GGTCATTGAGAAACGCGAGC+AGG | - | chr1.3:67971429-67971448 | MS.gene59216:intron | 55.0% | |
| GTCTTCGGAAGACGTCGAGT+AGG | + | chr1.3:67971299-67971318 | None:intergenic | 55.0% | |
| GTGGCCGCGACAAGAAACTT+TGG | - | chr1.3:67969709-67969728 | MS.gene59216:CDS | 55.0% | |
| TGCACCACCTAACATGACGG+CGG | - | chr1.3:67969592-67969611 | MS.gene59216:CDS | 55.0% | |
| TGCTCCGGCTGAACCATCAA+CGG | + | chr1.3:67972240-67972259 | None:intergenic | 55.0% | |
| TGGGAGGGATGAGTTCGTCA+AGG | - | chr1.3:67971875-67971894 | MS.gene59216:intron | 55.0% | |
| TTTGGGCCCAACTTGGTTGC+CGG | + | chr1.3:67971775-67971794 | None:intergenic | 55.0% | |
| !! | GGAAGAGGGTTGGTGGAAGT+AGG | + | chr1.3:67971226-67971245 | None:intergenic | 55.0% |
| !! | TGTGTTTGTTGTGGTGGCGG+TGG | + | chr1.3:67971640-67971659 | None:intergenic | 55.0% |
| !!! | GCTGTTTTAAGTGGTGGCGG+TGG | - | chr1.3:67969545-67969564 | MS.gene59216:CDS | 55.0% |
| AACATGACGGCGGAAGGTGG+TGG | - | chr1.3:67969602-67969621 | MS.gene59216:CDS | 60.0% | |
| AGCACCAACACCAACACCGG+CGG | - | chr1.3:67971696-67971715 | MS.gene59216:intron | 60.0% | |
| CAAGCTGATGCACCCACTGC+AGG | + | chr1.3:67972426-67972445 | None:intergenic | 60.0% | |
| CATGGAGCAGAACCGTGGAC+AGG | - | chr1.3:67972293-67972312 | MS.gene59216:CDS | 60.0% | |
| CCACCTAACATGACGGCGGA+AGG | - | chr1.3:67969596-67969615 | MS.gene59216:CDS | 60.0% | |
| CCACCTTCCGCCGTCATGTT+AGG | + | chr1.3:67969602-67969621 | None:intergenic | 60.0% | |
| CCTAACATGACGGCGGAAGG+TGG | - | chr1.3:67969599-67969618 | MS.gene59216:CDS | 60.0% | |
| CCTTCCGCCGTCATGTTAGG+TGG | + | chr1.3:67969599-67969618 | None:intergenic | 60.0% | |
| CGTCGAGTAGGAGCTAGCCA+TGG | + | chr1.3:67971287-67971306 | None:intergenic | 60.0% | |
| GTAGCTTCGGTGGTAACCGG+TGG | - | chr1.3:67969690-67969709 | MS.gene59216:CDS | 60.0% | |
| TGGTTCAGCCGGAGCAGCAA+TGG | - | chr1.3:67972244-67972263 | MS.gene59216:CDS | 60.0% | |
| TTCAGCCGGAGCAGCAATGG+CGG | - | chr1.3:67972247-67972266 | MS.gene59216:CDS | 60.0% | |
| TTGGGCCCAACTTGGTTGCC+GGG | + | chr1.3:67971774-67971793 | None:intergenic | 60.0% | |
| !! | ATTGGTGCTACCGCCGGTGT+TGG | + | chr1.3:67971709-67971728 | None:intergenic | 60.0% |
| !! | GGCACCGTTGATGGTTCAGC+CGG | - | chr1.3:67972233-67972252 | MS.gene59216:CDS | 60.0% |
| !! | TGGAGCTGGTTCGAACCAGG+TGG | - | chr1.3:67972191-67972210 | MS.gene59216:CDS | 60.0% |
| !! | TGGTGGAGCTGGTTCGAACC+AGG | - | chr1.3:67972188-67972207 | MS.gene59216:CDS | 60.0% |
| ACCACCCCCGGCAACCAAGT+TGG | - | chr1.3:67971765-67971784 | MS.gene59216:intron | 65.0% | |
| CAATGGCGGCCACCTCAGCA+GGG | - | chr1.3:67972261-67972280 | MS.gene59216:CDS | 65.0% | |
| CCACCCCCGGCAACCAAGTT+GGG | - | chr1.3:67971766-67971785 | MS.gene59216:intron | 65.0% | |
| GAGCATGGCGGCACCGTTGA+TGG | - | chr1.3:67972224-67972243 | MS.gene59216:CDS | 65.0% | |
| TGGGCCCAACTTGGTTGCCG+GGG | + | chr1.3:67971773-67971792 | None:intergenic | 65.0% | |
| ! | ATGACGGCGGAAGGTGGTGG+TGG | - | chr1.3:67969605-67969624 | MS.gene59216:CDS | 65.0% |
| !! | AACGGTGCCGCCATGCTCTC+GGG | + | chr1.3:67972222-67972241 | None:intergenic | 65.0% |
| !! | CAACGGTGCCGCCATGCTCT+CGG | + | chr1.3:67972223-67972242 | None:intergenic | 65.0% |
| !! | GCTACCGCCGGTGTTGGTGT+TGG | + | chr1.3:67971703-67971722 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGGAGT+TGG | - | chr1.3:67969617-67969636 | MS.gene59216:CDS | 65.0% |
| ACCGCCAGCACAACCACCCC+CGG | - | chr1.3:67971753-67971772 | MS.gene59216:intron | 70.0% | |
| CCCAACTTGGTTGCCGGGGG+TGG | + | chr1.3:67971769-67971788 | None:intergenic | 70.0% | |
| GCAATGGCGGCCACCTCAGC+AGG | - | chr1.3:67972260-67972279 | MS.gene59216:CDS | 70.0% | |
| GGGCCCAACTTGGTTGCCGG+GGG | + | chr1.3:67971772-67971791 | None:intergenic | 70.0% | |
| GGTGCAGCTGCTGCTGCTGC+TGG | + | chr1.3:67969578-67969597 | None:intergenic | 70.0% | |
| GGTGGCCGCCATTGCTGCTC+CGG | + | chr1.3:67972255-67972274 | None:intergenic | 70.0% | |
| GGTGGTGCAGCCCGAGAGCA+TGG | - | chr1.3:67972209-67972228 | MS.gene59216:CDS | 70.0% | |
| GTTGCCGGGGGTGGTTGTGC+TGG | + | chr1.3:67971760-67971779 | None:intergenic | 70.0% | |
| TGCTCTCGGGCTGCACCACC+TGG | + | chr1.3:67972209-67972228 | None:intergenic | 70.0% | |
| ! | GGTGCAGCCCGAGAGCATGG+CGG | - | chr1.3:67972212-67972231 | MS.gene59216:CDS | 70.0% |
| !! | ACGGCGGAAGGTGGTGGTGG+TGG | - | chr1.3:67969608-67969627 | MS.gene59216:CDS | 70.0% |
| !! | GCGGAAGGTGGTGGTGGTGG+TGG | - | chr1.3:67969611-67969630 | MS.gene59216:CDS | 70.0% |
| GCCGGGGGTGGTTGTGCTGG+CGG | + | chr1.3:67971757-67971776 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 67969530 | 67972446 | 67969530 | ID=MS.gene59216 |
| chr1.3 | mRNA | 67969530 | 67972446 | 67969530 | ID=MS.gene59216.t1;Parent=MS.gene59216 |
| chr1.3 | exon | 67972163 | 67972446 | 67972163 | ID=MS.gene59216.t1.exon1;Parent=MS.gene59216.t1 |
| chr1.3 | CDS | 67972163 | 67972446 | 67972163 | ID=cds.MS.gene59216.t1;Parent=MS.gene59216.t1 |
| chr1.3 | exon | 67969530 | 67971198 | 67969530 | ID=MS.gene59216.t1.exon2;Parent=MS.gene59216.t1 |
| chr1.3 | CDS | 67969530 | 67971198 | 67969530 | ID=cds.MS.gene59216.t1;Parent=MS.gene59216.t1 |
| Gene Sequence |
| Protein sequence |
