Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59343.t1 | XP_003611950.1 | 85.1 | 208 | 30 | 1 | 1 | 208 | 1 | 207 | 4.90E-86 | 327.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59343.t1 | O23208 | 51.7 | 211 | 91 | 7 | 7 | 210 | 10 | 216 | 1.3e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59343.t1 | G7KC76 | 85.1 | 208 | 30 | 1 | 1 | 208 | 1 | 207 | 3.5e-86 | 327.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59343.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053541 | MS.gene59343 | 0.801972 | 6.99E-49 | -1.69E-46 |
| MS.gene053542 | MS.gene59343 | 0.805393 | 1.36E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene59343 | 0.802899 | 4.51E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene59343 | 0.809799 | 1.58E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene59343 | -0.803668 | 3.12E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene59343 | 0.813845 | 2.08E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene59343 | 0.801193 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59343.t1 | MTR_5g019680 | 92.788 | 208 | 14 | 1 | 1 | 208 | 1 | 207 | 1.90e-134 | 375 |
| MS.gene59343.t1 | MTR_5g019650 | 81.532 | 222 | 28 | 3 | 1 | 210 | 1 | 221 | 3.55e-118 | 335 |
| MS.gene59343.t1 | MTR_4g107650 | 38.776 | 147 | 73 | 3 | 31 | 160 | 62 | 208 | 1.15e-22 | 94.0 |
| MS.gene59343.t1 | MTR_3g086790 | 60.811 | 74 | 29 | 0 | 54 | 127 | 60 | 133 | 5.43e-22 | 91.7 |
| MS.gene59343.t1 | MTR_6g007647 | 47.273 | 110 | 49 | 2 | 54 | 156 | 33 | 140 | 6.33e-22 | 90.5 |
| MS.gene59343.t1 | MTR_6g007647 | 47.273 | 110 | 49 | 2 | 54 | 156 | 67 | 174 | 8.95e-22 | 90.5 |
| MS.gene59343.t1 | MTR_8g089895 | 56.250 | 80 | 35 | 0 | 45 | 124 | 45 | 124 | 9.57e-22 | 90.9 |
| MS.gene59343.t1 | MTR_6g011610 | 50.505 | 99 | 49 | 0 | 45 | 143 | 87 | 185 | 1.50e-20 | 87.0 |
| MS.gene59343.t1 | MTR_6g011610 | 50.505 | 99 | 49 | 0 | 45 | 143 | 68 | 166 | 1.62e-20 | 86.7 |
| MS.gene59343.t1 | MTR_1g061660 | 45.545 | 101 | 55 | 0 | 54 | 154 | 59 | 159 | 2.02e-20 | 85.9 |
| MS.gene59343.t1 | MTR_5g038280 | 60.563 | 71 | 28 | 0 | 54 | 124 | 87 | 157 | 3.18e-20 | 87.0 |
| MS.gene59343.t1 | MTR_8g468210 | 44.898 | 98 | 54 | 0 | 46 | 143 | 69 | 166 | 4.80e-20 | 85.9 |
| MS.gene59343.t1 | MTR_5g039000 | 44.737 | 114 | 58 | 1 | 46 | 159 | 69 | 177 | 8.05e-20 | 85.5 |
| MS.gene59343.t1 | MTR_3g092150 | 47.959 | 98 | 44 | 1 | 56 | 153 | 40 | 130 | 1.04e-19 | 84.3 |
| MS.gene59343.t1 | MTR_8g469430 | 58.571 | 70 | 29 | 0 | 54 | 123 | 89 | 158 | 1.28e-19 | 84.7 |
| MS.gene59343.t1 | MTR_7g103340 | 45.918 | 98 | 53 | 0 | 48 | 145 | 57 | 154 | 5.75e-19 | 82.0 |
| MS.gene59343.t1 | MTR_3g080100 | 43.396 | 106 | 60 | 0 | 48 | 153 | 14 | 119 | 6.93e-19 | 81.6 |
| MS.gene59343.t1 | MTR_3g080100 | 44.660 | 103 | 57 | 0 | 51 | 153 | 56 | 158 | 1.11e-18 | 81.6 |
| MS.gene59343.t1 | MTR_8g026960 | 44.248 | 113 | 63 | 0 | 58 | 170 | 38 | 150 | 2.28e-17 | 78.2 |
| MS.gene59343.t1 | MTR_7g010020 | 47.778 | 90 | 47 | 0 | 54 | 143 | 80 | 169 | 1.18e-15 | 73.9 |
| MS.gene59343.t1 | MTR_4g084750 | 43.564 | 101 | 43 | 1 | 54 | 154 | 65 | 151 | 1.36e-13 | 67.0 |
| MS.gene59343.t1 | MTR_4g100550 | 43.564 | 101 | 43 | 1 | 54 | 154 | 120 | 206 | 2.26e-13 | 67.8 |
| MS.gene59343.t1 | MTR_8g006705 | 45.263 | 95 | 47 | 1 | 54 | 143 | 146 | 240 | 8.73e-13 | 66.2 |
| MS.gene59343.t1 | MTR_1g054285 | 38.938 | 113 | 55 | 1 | 42 | 154 | 142 | 240 | 1.24e-12 | 65.9 |
| MS.gene59343.t1 | MTR_2g061030 | 38.017 | 121 | 61 | 1 | 34 | 154 | 180 | 286 | 1.58e-12 | 65.9 |
| MS.gene59343.t1 | MTR_4g097600 | 45.263 | 95 | 47 | 1 | 54 | 143 | 127 | 221 | 1.77e-12 | 65.1 |
| MS.gene59343.t1 | MTR_1g017090 | 42.574 | 101 | 44 | 1 | 54 | 154 | 130 | 216 | 2.03e-12 | 65.1 |
| MS.gene59343.t1 | MTR_7g093430 | 40.566 | 106 | 49 | 1 | 49 | 154 | 155 | 246 | 9.82e-12 | 63.2 |
| MS.gene59343.t1 | MTR_5g014890 | 45.263 | 95 | 47 | 1 | 54 | 143 | 123 | 217 | 1.53e-11 | 62.4 |
| MS.gene59343.t1 | MTR_5g013010 | 43.158 | 95 | 49 | 1 | 54 | 143 | 136 | 230 | 6.26e-11 | 60.8 |
| MS.gene59343.t1 | MTR_3g103590 | 43.836 | 73 | 41 | 0 | 52 | 124 | 143 | 215 | 6.59e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59343.t1 | AT4G36740 | 52.133 | 211 | 91 | 7 | 7 | 210 | 10 | 217 | 1.48e-57 | 181 |
| MS.gene59343.t1 | AT2G18550 | 46.018 | 226 | 100 | 9 | 1 | 210 | 1 | 220 | 4.08e-57 | 180 |
| MS.gene59343.t1 | AT4G36740 | 52.607 | 211 | 89 | 8 | 7 | 210 | 10 | 216 | 7.72e-57 | 179 |
| MS.gene59343.t1 | AT5G66700 | 46.364 | 220 | 104 | 4 | 5 | 210 | 9 | 228 | 1.49e-47 | 156 |
| MS.gene59343.t1 | AT3G01470 | 32.850 | 207 | 109 | 5 | 2 | 178 | 13 | 219 | 4.96e-24 | 96.7 |
| MS.gene59343.t1 | AT1G69780 | 38.961 | 154 | 80 | 3 | 2 | 143 | 23 | 174 | 1.67e-23 | 95.5 |
| MS.gene59343.t1 | AT4G40060 | 63.380 | 71 | 26 | 0 | 54 | 124 | 59 | 129 | 6.69e-22 | 91.3 |
| MS.gene59343.t1 | AT2G22430 | 64.789 | 71 | 25 | 0 | 54 | 124 | 62 | 132 | 6.79e-22 | 91.7 |
| MS.gene59343.t1 | AT5G65310 | 57.143 | 77 | 33 | 0 | 43 | 119 | 43 | 119 | 2.74e-21 | 89.7 |
| MS.gene59343.t1 | AT5G65310 | 57.143 | 77 | 33 | 0 | 43 | 119 | 61 | 137 | 3.19e-21 | 89.7 |
| MS.gene59343.t1 | AT1G26960 | 42.647 | 136 | 73 | 1 | 54 | 184 | 71 | 206 | 3.59e-21 | 88.6 |
| MS.gene59343.t1 | AT5G53980 | 36.552 | 145 | 90 | 1 | 45 | 187 | 2 | 146 | 1.23e-20 | 84.7 |
| MS.gene59343.t1 | AT2G46680 | 48.000 | 100 | 51 | 1 | 48 | 146 | 26 | 125 | 5.76e-20 | 85.5 |
| MS.gene59343.t1 | AT5G03790 | 39.683 | 126 | 75 | 1 | 14 | 139 | 38 | 162 | 5.95e-20 | 84.7 |
| MS.gene59343.t1 | AT2G46680 | 45.370 | 108 | 52 | 1 | 48 | 155 | 26 | 126 | 7.17e-20 | 85.1 |
| MS.gene59343.t1 | AT5G03790 | 40.496 | 121 | 71 | 1 | 19 | 139 | 43 | 162 | 1.04e-19 | 83.2 |
| MS.gene59343.t1 | AT2G36610 | 45.370 | 108 | 51 | 2 | 46 | 145 | 63 | 170 | 5.04e-19 | 81.3 |
| MS.gene59343.t1 | AT3G01220 | 51.852 | 81 | 38 | 1 | 45 | 124 | 77 | 157 | 4.70e-18 | 80.5 |
| MS.gene59343.t1 | AT3G61890 | 44.444 | 99 | 55 | 0 | 57 | 155 | 33 | 131 | 4.82e-18 | 79.7 |
| MS.gene59343.t1 | AT5G15150 | 58.209 | 67 | 28 | 0 | 54 | 120 | 115 | 181 | 8.06e-18 | 80.5 |
| MS.gene59343.t1 | AT1G27045 | 40.152 | 132 | 66 | 1 | 52 | 170 | 15 | 146 | 2.14e-17 | 76.6 |
| MS.gene59343.t1 | AT1G27045 | 40.152 | 132 | 66 | 1 | 52 | 170 | 23 | 154 | 2.31e-17 | 77.0 |
| MS.gene59343.t1 | AT1G27045 | 40.152 | 132 | 66 | 1 | 52 | 170 | 23 | 154 | 2.31e-17 | 77.0 |
| MS.gene59343.t1 | AT1G27045 | 42.149 | 121 | 57 | 1 | 52 | 159 | 66 | 186 | 3.03e-17 | 77.4 |
| MS.gene59343.t1 | AT1G27045 | 55.882 | 68 | 30 | 0 | 52 | 119 | 66 | 133 | 3.02e-16 | 75.1 |
| MS.gene59343.t1 | AT2G22800 | 45.161 | 93 | 46 | 1 | 54 | 141 | 113 | 205 | 1.42e-12 | 65.5 |
| MS.gene59343.t1 | AT4G16780 | 41.905 | 105 | 51 | 2 | 44 | 143 | 124 | 223 | 2.97e-12 | 64.7 |
| MS.gene59343.t1 | AT2G01430 | 37.607 | 117 | 55 | 2 | 54 | 166 | 139 | 241 | 4.10e-12 | 63.9 |
| MS.gene59343.t1 | AT5G47370 | 35.659 | 129 | 78 | 1 | 20 | 143 | 96 | 224 | 9.92e-12 | 63.2 |
| MS.gene59343.t1 | AT4G17460 | 40.385 | 104 | 57 | 1 | 45 | 143 | 126 | 229 | 1.64e-11 | 62.4 |
| MS.gene59343.t1 | AT4G37790 | 44.086 | 93 | 47 | 1 | 54 | 141 | 126 | 218 | 1.72e-11 | 62.4 |
| MS.gene59343.t1 | AT5G06710 | 36.667 | 120 | 62 | 1 | 35 | 154 | 171 | 276 | 3.69e-11 | 61.6 |
Find 39 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTGAGAAATTATT+TGG | 0.079303 | 5.4:-12022094 | None:intergenic |
| TCCACCTAGCCCTTCGATTC+TGG | 0.220585 | 5.4:-12022419 | None:intergenic |
| TGATGAACAAATGAAAATTT+TGG | 0.274227 | 5.4:+12022299 | MS.gene59343:CDS |
| GAACCAAACTGCAACTTGTC+TGG | 0.307826 | 5.4:-12022397 | None:intergenic |
| GAAGTACTAGAGCTACTATT+TGG | 0.364392 | 5.4:-12023505 | None:intergenic |
| ATCCCAGACAAGTTGCAGTT+TGG | 0.404850 | 5.4:+12022394 | MS.gene59343:CDS |
| TTCACAATCCATGGAAATAG+TGG | 0.417032 | 5.4:+12023534 | MS.gene59343:CDS |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5.4:-12022219 | None:intergenic |
| TATAAAGATTAATCCATTCC+TGG | 0.431532 | 5.4:-12023645 | None:intergenic |
| TTCATCAATTTCACAATCCA+TGG | 0.435367 | 5.4:+12023525 | MS.gene59343:CDS |
| ACCTTGTTGAGAAATTATTT+GGG | 0.435398 | 5.4:-12022093 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.440743 | 5.4:-12022515 | None:intergenic |
| ATTTGGGTGTATTCACAAGC+TGG | 0.458844 | 5.4:-12022077 | None:intergenic |
| ACTGAGACATAAGCATCATT+TGG | 0.463969 | 5.4:-12022049 | None:intergenic |
| TCAAATTCATCAAGTAATTG+TGG | 0.464011 | 5.4:-12023559 | None:intergenic |
| TTGTGGGTCCACTATTTCCA+TGG | 0.473816 | 5.4:-12023542 | None:intergenic |
| GATAGACTTGCAATGGAGCT+TGG | 0.475779 | 5.4:+12022366 | MS.gene59343:CDS |
| AAGGAGACACTTCTCAAGAA+TGG | 0.492858 | 5.4:-12022496 | None:intergenic |
| CAAATTCATCAAGTAATTGT+GGG | 0.494706 | 5.4:-12023558 | None:intergenic |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5.4:+12022344 | MS.gene59343:CDS |
| AACCAAACTGCAACTTGTCT+GGG | 0.501567 | 5.4:-12022396 | None:intergenic |
| CAGTTTGGTTCCAGAATCGA+AGG | 0.504708 | 5.4:+12022409 | MS.gene59343:CDS |
| TTTGGGTGTATTCACAAGCT+GGG | 0.519334 | 5.4:-12022076 | None:intergenic |
| GGTTCCAGAATCGAAGGGCT+AGG | 0.526167 | 5.4:+12022415 | MS.gene59343:CDS |
| ATTACTTCAACGGCCAGGAA+TGG | 0.529342 | 5.4:+12023632 | MS.gene59343:CDS |
| TTGAAGTAATATGTCGCATC+CGG | 0.533058 | 5.4:-12023619 | None:intergenic |
| GCAGCTTTCTGAGGCAGAGA+AGG | 0.540038 | 5.4:+12023462 | MS.gene59343:CDS |
| GAAGAAGGATAGACTTGCAA+TGG | 0.545678 | 5.4:+12022359 | MS.gene59343:CDS |
| AGCTACTATTTGGCTCTCGA+AGG | 0.571565 | 5.4:-12023495 | None:intergenic |
| GATGCGACATATTACTTCAA+CGG | 0.573154 | 5.4:+12023622 | MS.gene59343:CDS |
| GCTAACAGAGCAGCTTTCTG+AGG | 0.593252 | 5.4:+12023453 | MS.gene59343:CDS |
| CGTAGTAAGAAGAACAAAGG+TGG | 0.606299 | 5.4:+12022231 | MS.gene59343:CDS |
| GAGACACTTCTCAAGAATGG+TGG | 0.632257 | 5.4:-12022493 | None:intergenic |
| GAAGTGTCTCCTTGAAACCA+AGG | 0.638232 | 5.4:+12022506 | MS.gene59343:CDS |
| GACATATTACTTCAACGGCC+AGG | 0.639581 | 5.4:+12023627 | MS.gene59343:CDS |
| ACCCAAATAATTTCTCAACA+AGG | 0.645027 | 5.4:+12022092 | MS.gene59343:CDS |
| TCCAGAATCGAAGGGCTAGG+TGG | 0.655135 | 5.4:+12022418 | MS.gene59343:CDS |
| AAGCGTAGTAAGAAGAACAA+AGG | 0.668285 | 5.4:+12022228 | MS.gene59343:CDS |
| AGTTTGGTTCCAGAATCGAA+GGG | 0.690392 | 5.4:+12022410 | MS.gene59343:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAATTGAACATATA+AGG | - | chr5.4:12023420-12023439 | None:intergenic | 10.0% |
| !! | AATATATAAAAACAAAAACA+AGG | + | chr5.4:12023127-12023146 | MS.gene59343:intron | 10.0% |
| !! | TTATTAAAAATTAAAATCAG+TGG | + | chr5.4:12022619-12022638 | MS.gene59343:intron | 10.0% |
| !!! | ATTTTTGTTATGTTTTTTTA+GGG | + | chr5.4:12022181-12022200 | MS.gene59343:intron | 10.0% |
| !!! | TATTTTTGTTATGTTTTTTT+AGG | + | chr5.4:12022180-12022199 | MS.gene59343:intron | 10.0% |
| !! | AAAATGAAGAAAATATTGTA+CGG | - | chr5.4:12023219-12023238 | None:intergenic | 15.0% |
| !!! | AAAATTTTGGAAGAAAATTT+TGG | + | chr5.4:12022312-12022331 | MS.gene59343:CDS | 15.0% |
| !!! | TTTTTGTTATGTTTTTTTAG+GGG | + | chr5.4:12022182-12022201 | MS.gene59343:intron | 15.0% |
| !! | ATTGAACATATAAGGTAATT+AGG | - | chr5.4:12023412-12023431 | None:intergenic | 20.0% |
| !! | CACTAGTAATATAATATTGT+TGG | - | chr5.4:12022694-12022713 | None:intergenic | 20.0% |
| !! | TCTAAGCAAAGATTATTAAA+AGG | - | chr5.4:12023368-12023387 | None:intergenic | 20.0% |
| !!! | ACTTTATCATTTTTCATTCA+AGG | - | chr5.4:12022943-12022962 | None:intergenic | 20.0% |
| !!! | CTTTATCATTTTTCATTCAA+GGG | - | chr5.4:12022942-12022961 | None:intergenic | 20.0% |
| !!! | GTACAATATTTTCTTCATTT+TGG | + | chr5.4:12023218-12023237 | MS.gene59343:intron | 20.0% |
| !!! | TGATGAACAAATGAAAATTT+TGG | + | chr5.4:12022299-12022318 | MS.gene59343:CDS | 20.0% |
| !!! | TTTATCATTTTTCATTCAAG+GGG | - | chr5.4:12022941-12022960 | None:intergenic | 20.0% |
| ! | AACCTTGTTGAGAAATTATT+TGG | - | chr5.4:12022097-12022116 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5.4:12022268-12022287 | MS.gene59343:CDS | 25.0% |
| ! | ACCTTGTTGAGAAATTATTT+GGG | - | chr5.4:12022096-12022115 | None:intergenic | 25.0% |
| ! | AGAAAATATTGTACGGAATT+AGG | - | chr5.4:12023212-12023231 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+GGG | - | chr5.4:12022868-12022887 | None:intergenic | 25.0% |
| ! | CAAATTCATCAAGTAATTGT+GGG | - | chr5.4:12023561-12023580 | None:intergenic | 25.0% |
| ! | GAGAACTTTAATAATGTGAA+CGG | - | chr5.4:12023031-12023050 | None:intergenic | 25.0% |
| ! | TATAAAGATTAATCCATTCC+TGG | - | chr5.4:12023648-12023667 | None:intergenic | 25.0% |
| ! | TATTCTCTCTTTCAACATTT+AGG | - | chr5.4:12022869-12022888 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAAGTAATTG+TGG | - | chr5.4:12023562-12023581 | None:intergenic | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5.4:12022272-12022291 | None:intergenic | 25.0% |
| AAATAAGAAGATGAAGCAAG+AGG | - | chr5.4:12022536-12022555 | None:intergenic | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5.4:12022738-12022757 | MS.gene59343:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5.4:12022739-12022758 | MS.gene59343:intron | 30.0% | |
| ACATAACATGAATGATCATG+TGG | - | chr5.4:12023063-12023082 | None:intergenic | 30.0% | |
| ACCCAAATAATTTCTCAACA+AGG | + | chr5.4:12022092-12022111 | MS.gene59343:CDS | 30.0% | |
| ATTGTTGGAGAAATGATGAT+TGG | - | chr5.4:12022679-12022698 | None:intergenic | 30.0% | |
| TCTACTTCATGATAACAAGT+TGG | - | chr5.4:12023257-12023276 | None:intergenic | 30.0% | |
| TTCATCAATTTCACAATCCA+TGG | + | chr5.4:12023525-12023544 | MS.gene59343:CDS | 30.0% | |
| TTCTCTCTTTCAACATTTAG+GGG | - | chr5.4:12022867-12022886 | None:intergenic | 30.0% | |
| !! | AGTGTTGTTTGTTGTCTTTA+AGG | - | chr5.4:12023171-12023190 | None:intergenic | 30.0% |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5.4:12022228-12022247 | MS.gene59343:CDS | 35.0% | |
| ACTGAGACATAAGCATCATT+TGG | - | chr5.4:12022052-12022071 | None:intergenic | 35.0% | |
| CTTTAATAATGTGAACGGCT+TGG | - | chr5.4:12023026-12023045 | None:intergenic | 35.0% | |
| GATGCGACATATTACTTCAA+CGG | + | chr5.4:12023622-12023641 | MS.gene59343:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5.4:12022344-12022363 | MS.gene59343:CDS | 35.0% | |
| TTCACAATCCATGGAAATAG+TGG | + | chr5.4:12023534-12023553 | MS.gene59343:CDS | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | chr5.4:12022874-12022893 | MS.gene59343:intron | 35.0% | |
| TTGAAGTAATATGTCGCATC+CGG | - | chr5.4:12023622-12023641 | None:intergenic | 35.0% | |
| ! | ACATTGATTAGACGGTAATG+GGG | - | chr5.4:12023310-12023329 | None:intergenic | 35.0% |
| ! | GAAGTACTAGAGCTACTATT+TGG | - | chr5.4:12023508-12023527 | None:intergenic | 35.0% |
| ! | GACATTGATTAGACGGTAAT+GGG | - | chr5.4:12023311-12023330 | None:intergenic | 35.0% |
| ! | TTCATTTTGGACCTTTCTCA+AGG | + | chr5.4:12023231-12023250 | MS.gene59343:intron | 35.0% |
| !! | TGATGATGTGTTTTTCATGC+CGG | + | chr5.4:12023600-12023619 | MS.gene59343:CDS | 35.0% |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5.4:12022399-12022418 | None:intergenic | 40.0% | |
| AAGGAGACACTTCTCAAGAA+TGG | - | chr5.4:12022499-12022518 | None:intergenic | 40.0% | |
| ATATGCACGTTCATATGTGG+TGG | - | chr5.4:12022978-12022997 | None:intergenic | 40.0% | |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5.4:12022767-12022786 | MS.gene59343:intron | 40.0% | |
| ATTTGGGTGTATTCACAAGC+TGG | - | chr5.4:12022080-12022099 | None:intergenic | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5.4:12022231-12022250 | MS.gene59343:CDS | 40.0% | |
| CTCATATGCACGTTCATATG+TGG | - | chr5.4:12022981-12023000 | None:intergenic | 40.0% | |
| GAAGAAGGATAGACTTGCAA+TGG | + | chr5.4:12022359-12022378 | MS.gene59343:CDS | 40.0% | |
| TAATGAAAGAGACATGCACG+TGG | - | chr5.4:12023339-12023358 | None:intergenic | 40.0% | |
| TATGCACGTTCATATGTGGT+GGG | - | chr5.4:12022977-12022996 | None:intergenic | 40.0% | |
| TTTGCTTTGTCCTGAAGAAC+CGG | - | chr5.4:12022907-12022926 | None:intergenic | 40.0% | |
| TTTGGGTGTATTCACAAGCT+GGG | - | chr5.4:12022079-12022098 | None:intergenic | 40.0% | |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5.4:12022518-12022537 | None:intergenic | 40.0% |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5.4:12022410-12022429 | MS.gene59343:CDS | 40.0% |
| ! | ATGAAGCAAGAGGTATACCT+TGG | - | chr5.4:12022526-12022545 | None:intergenic | 40.0% |
| ! | GGACATTGATTAGACGGTAA+TGG | - | chr5.4:12023312-12023331 | None:intergenic | 40.0% |
| ! | GGTGTAGGACATTGATTAGA+CGG | - | chr5.4:12023318-12023337 | None:intergenic | 40.0% |
| !! | TAACAAGTTGGCCTTGAGAA+AGG | - | chr5.4:12023245-12023264 | None:intergenic | 40.0% |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5.4:12022776-12022795 | None:intergenic | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5.4:12022394-12022413 | MS.gene59343:CDS | 45.0% | |
| ATGAACGTGCATATGAGCTC+TGG | + | chr5.4:12022984-12023003 | MS.gene59343:intron | 45.0% | |
| ATTACTTCAACGGCCAGGAA+TGG | + | chr5.4:12023632-12023651 | MS.gene59343:CDS | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5.4:12022770-12022789 | MS.gene59343:intron | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5.4:12022400-12022419 | None:intergenic | 45.0% | |
| GACATATTACTTCAACGGCC+AGG | + | chr5.4:12023627-12023646 | MS.gene59343:CDS | 45.0% | |
| GAGACACTTCTCAAGAATGG+TGG | - | chr5.4:12022496-12022515 | None:intergenic | 45.0% | |
| GATAGACTTGCAATGGAGCT+TGG | + | chr5.4:12022366-12022385 | MS.gene59343:CDS | 45.0% | |
| TGAACGTGCATATGAGCTCT+GGG | + | chr5.4:12022985-12023004 | MS.gene59343:intron | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5.4:12022222-12022241 | None:intergenic | 45.0% | |
| TTGTGGGTCCACTATTTCCA+TGG | - | chr5.4:12023545-12023564 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5.4:12022409-12022428 | MS.gene59343:CDS | 45.0% |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5.4:12022506-12022525 | MS.gene59343:CDS | 45.0% |
| !! | AATAAGCACTGGCATGCAAC+CGG | + | chr5.4:12022885-12022904 | MS.gene59343:intron | 45.0% |
| !! | ACGGTAATGGGGTTTCACTT+GGG | - | chr5.4:12023299-12023318 | None:intergenic | 45.0% |
| !! | AGCTACTATTTGGCTCTCGA+AGG | - | chr5.4:12023498-12023517 | None:intergenic | 45.0% |
| AAGAGACATGCACGTGGTGT+AGG | - | chr5.4:12023333-12023352 | None:intergenic | 50.0% | |
| GCTAACAGAGCAGCTTTCTG+AGG | + | chr5.4:12023453-12023472 | MS.gene59343:CDS | 50.0% | |
| !! | GACGGTAATGGGGTTTCACT+TGG | - | chr5.4:12023300-12023319 | None:intergenic | 50.0% |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5.4:12022415-12022434 | MS.gene59343:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5.4:12022422-12022441 | None:intergenic | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5.4:12022418-12022437 | MS.gene59343:CDS | 55.0% | |
| ! | TGGCATGCAACCGGTTCTTC+AGG | + | chr5.4:12022894-12022913 | MS.gene59343:intron | 55.0% |
| !! | GCAGCTTTCTGAGGCAGAGA+AGG | + | chr5.4:12023462-12023481 | MS.gene59343:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12022035 | 12023672 | 12022035 | ID=MS.gene59343 |
| chr5.4 | mRNA | 12022035 | 12023672 | 12022035 | ID=MS.gene59343.t1;Parent=MS.gene59343 |
| chr5.4 | exon | 12022035 | 12022113 | 12022035 | ID=MS.gene59343.t1.exon1;Parent=MS.gene59343.t1 |
| chr5.4 | CDS | 12022035 | 12022113 | 12022035 | ID=cds.MS.gene59343.t1;Parent=MS.gene59343.t1 |
| chr5.4 | exon | 12022202 | 12022527 | 12022202 | ID=MS.gene59343.t1.exon2;Parent=MS.gene59343.t1 |
| chr5.4 | CDS | 12022202 | 12022527 | 12022202 | ID=cds.MS.gene59343.t1;Parent=MS.gene59343.t1 |
| chr5.4 | exon | 12023445 | 12023672 | 12023445 | ID=MS.gene59343.t1.exon3;Parent=MS.gene59343.t1 |
| chr5.4 | CDS | 12023445 | 12023672 | 12023445 | ID=cds.MS.gene59343.t1;Parent=MS.gene59343.t1 |
| Gene Sequence |
| Protein sequence |
