Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59351.t1 | XP_003611971.1 | 99.4 | 171 | 1 | 0 | 1 | 171 | 1 | 171 | 4.50E-90 | 340.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59351.t1 | G7KC97 | 99.4 | 171 | 1 | 0 | 1 | 171 | 1 | 171 | 3.3e-90 | 340.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene59351 | 0.8104 | 1.17E-50 | -1.69E-46 |
| MS.gene050320 | MS.gene59351 | 0.807658 | 4.54E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene59351 | 0.801991 | 6.93E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene59351 | 0.815369 | 9.58E-52 | -1.69E-46 |
| MS.gene056752 | MS.gene59351 | 0.850178 | 2.01E-60 | -1.69E-46 |
| MS.gene058638 | MS.gene59351 | 0.835928 | 1.26E-56 | -1.69E-46 |
| MS.gene058639 | MS.gene59351 | 0.837762 | 4.29E-57 | -1.69E-46 |
| MS.gene058758 | MS.gene59351 | 0.815013 | 1.15E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene59351 | 0.817903 | 2.59E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene59351 | 0.815275 | 1.00E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene59351 | 0.802211 | 6.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59351.t1 | MTR_5g019900 | 99.415 | 171 | 1 | 0 | 1 | 171 | 1 | 171 | 1.67e-126 | 352 |
| MS.gene59351.t1 | MTR_3g111800 | 64.957 | 117 | 38 | 2 | 20 | 133 | 1 | 117 | 6.53e-47 | 150 |
| MS.gene59351.t1 | MTR_3g111800 | 64.957 | 117 | 38 | 2 | 20 | 133 | 1 | 117 | 8.68e-47 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59351.t1 | AT4G36660 | 70.588 | 170 | 40 | 2 | 1 | 160 | 1 | 170 | 1.08e-78 | 232 |
| MS.gene59351.t1 | AT5G65650 | 69.186 | 172 | 46 | 2 | 1 | 165 | 1 | 172 | 2.66e-76 | 226 |
| MS.gene59351.t1 | AT1G19380 | 54.622 | 119 | 53 | 1 | 30 | 147 | 25 | 143 | 5.94e-37 | 125 |
Find 43 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGGAAGGTACAAATTT+TGG | 0.077573 | 5.4:+12097508 | MS.gene59351:CDS |
| TTCCTTTGTCAGCTTGCTTA+AGG | 0.283386 | 5.4:-12101086 | None:intergenic |
| GGATCAGGTTGCCGAGGTTT+TGG | 0.290545 | 5.4:+12097834 | MS.gene59351:CDS |
| AACATGGATTCAGGTTTGTT+TGG | 0.307707 | 5.4:+12097486 | MS.gene59351:CDS |
| ACCGTTTCTCTTCGTTGGTC+TGG | 0.356252 | 5.4:+12097579 | MS.gene59351:CDS |
| GACGGCGGCGATTAACAAAA+AGG | 0.382742 | 5.4:+12097461 | MS.gene59351:CDS |
| CTGGTACCGTTTCTCTTCGT+TGG | 0.412184 | 5.4:+12097574 | MS.gene59351:CDS |
| AATGGAGGAGAGGGAGAAAG+TGG | 0.421490 | 5.4:+12097775 | MS.gene59351:CDS |
| GATTCAGGTTTGTTTGGAAA+AGG | 0.446023 | 5.4:+12097492 | MS.gene59351:CDS |
| ACATCGAGATCGTCGTGAAT+CGG | 0.453320 | 5.4:-12097636 | None:intergenic |
| AGAAAGTGGTGAGGCATATG+TGG | 0.462069 | 5.4:+12097789 | MS.gene59351:CDS |
| AGTATCGAGGTCACTGGATA+AGG | 0.465982 | 5.4:-12097613 | None:intergenic |
| AAGGAAAACGAACCGTGGAT+TGG | 0.476537 | 5.4:-12097979 | None:intergenic |
| ACACCAACAGCCGTAGGATC+AGG | 0.511562 | 5.4:+12097819 | MS.gene59351:CDS |
| TTAATCGCCGCCGTCGTCGT+TGG | 0.517902 | 5.4:-12097453 | None:intergenic |
| CAGGTTTGTTTGGAAAAGGA+AGG | 0.533040 | 5.4:+12097496 | MS.gene59351:CDS |
| CAACCTGATCCTACGGCTGT+TGG | 0.537984 | 5.4:-12097822 | None:intergenic |
| CGAACCGTGGATTGGATAGG+AGG | 0.542124 | 5.4:-12097971 | None:intergenic |
| TCTGTGTGTGTAGGAAATGG+AGG | 0.543569 | 5.4:+12097760 | MS.gene59351:intron |
| CGGAAATGAAGGATGACGAT+GGG | 0.550371 | 5.4:+12097427 | None:intergenic |
| ACCAGACCAACGAAGAGAAA+CGG | 0.550644 | 5.4:-12097580 | None:intergenic |
| GAAAGTGGTGAGGCATATGT+GGG | 0.551973 | 5.4:+12097790 | MS.gene59351:CDS |
| ACCGTGGATTGGATAGGAGG+TGG | 0.560306 | 5.4:-12097968 | None:intergenic |
| TGTGTAGGAAATGGAGGAGA+GGG | 0.567688 | 5.4:+12097766 | MS.gene59351:intron |
| AATCGGAGTATCGAGGTCAC+TGG | 0.567901 | 5.4:-12097619 | None:intergenic |
| AAACGAACCGTGGATTGGAT+AGG | 0.568958 | 5.4:-12097974 | None:intergenic |
| ACCTCGGCAACCTGATCCTA+CGG | 0.573548 | 5.4:-12097829 | None:intergenic |
| AGCCTTAAGCAAGCTGACAA+AGG | 0.595487 | 5.4:+12101084 | MS.gene59351:CDS |
| GAATTGACAAGTGATGTTCC+TGG | 0.596743 | 5.4:+12097884 | MS.gene59351:CDS |
| CATCATATTTCAGAGAGCAC+AGG | 0.597960 | 5.4:+12101050 | MS.gene59351:intron |
| AGGAGAGGGAGAAAGTGGTG+AGG | 0.601765 | 5.4:+12097780 | MS.gene59351:CDS |
| TGGGCTTCCAACGACGACGG+CGG | 0.609391 | 5.4:+12097446 | MS.gene59351:CDS |
| AGAAACGGTACCAGTAAACA+TGG | 0.615388 | 5.4:-12097565 | None:intergenic |
| GCCGTAGGATCAGGTTGCCG+AGG | 0.615991 | 5.4:+12097828 | MS.gene59351:CDS |
| AAAGCCTCTTGCCAAAACCT+CGG | 0.619602 | 5.4:-12097845 | None:intergenic |
| CGATGGGCTTCCAACGACGA+CGG | 0.632047 | 5.4:+12097443 | MS.gene59351:CDS |
| TCCACCTCCTATCCAATCCA+CGG | 0.641814 | 5.4:+12097967 | MS.gene59351:CDS |
| TCGGAAATGAAGGATGACGA+TGG | 0.646801 | 5.4:+12097426 | None:intergenic |
| GTGTGTAGGAAATGGAGGAG+AGG | 0.656261 | 5.4:+12097765 | MS.gene59351:intron |
| CGTCGTGAATCGGAGTATCG+AGG | 0.677291 | 5.4:-12097626 | None:intergenic |
| ATAGCATCATCTCTAACACC+AGG | 0.678366 | 5.4:-12097902 | None:intergenic |
| ATGTGTACACCAACAGCCGT+AGG | 0.683663 | 5.4:+12097813 | MS.gene59351:CDS |
| ACAAAGGAAAAGAAGCGATG+CGG | 0.741207 | 5.4:+12101100 | MS.gene59351:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATTTTTAATAAA+GGG | - | chr5.4:12100186-12100205 | None:intergenic | 0.0% |
| !!! | TTTATTTTTATTTTTAATAA+AGG | - | chr5.4:12100187-12100206 | None:intergenic | 0.0% |
| !! | ATAAATCTTTATATGTTTAT+AGG | - | chr5.4:12098629-12098648 | None:intergenic | 10.0% |
| !! | TAAATATTTAAGTAATATCT+TGG | - | chr5.4:12097725-12097744 | None:intergenic | 10.0% |
| !! | TTAAATATGAATGAGATTAA+AGG | - | chr5.4:12097680-12097699 | None:intergenic | 15.0% |
| !!! | TTTACAATTTGTATGTTTTT+TGG | + | chr5.4:12098988-12099007 | MS.gene59351:intron | 15.0% |
| !! | ATAATATTGCACTAGAAATT+TGG | + | chr5.4:12098127-12098146 | MS.gene59351:intron | 20.0% |
| !! | GAACAAAAGATAAATTAAAG+TGG | - | chr5.4:12098360-12098379 | None:intergenic | 20.0% |
| !! | GATATTGTTAGTTAGATAAA+AGG | + | chr5.4:12099479-12099498 | MS.gene59351:intron | 20.0% |
| !! | TAAAATGAATGTTTGAATAG+AGG | - | chr5.4:12100487-12100506 | None:intergenic | 20.0% |
| !! | TAATCTAAATTAACTGAGAA+TGG | - | chr5.4:12100712-12100731 | None:intergenic | 20.0% |
| !! | TATATGTTTATAGGTGTTTA+TGG | - | chr5.4:12098620-12098639 | None:intergenic | 20.0% |
| !! | TCATACTAGAGTATATATTA+TGG | + | chr5.4:12101011-12101030 | MS.gene59351:intron | 20.0% |
| !! | TGTAAGTAAATAGACAAAAA+AGG | - | chr5.4:12099270-12099289 | None:intergenic | 20.0% |
| !!! | AAAAAATCAATTTTAGATGG+AGG | - | chr5.4:12100076-12100095 | None:intergenic | 20.0% |
| !!! | ACTCATTGTTAATTTGTTAT+TGG | + | chr5.4:12098074-12098093 | MS.gene59351:intron | 20.0% |
| !!! | ATCATTTTGGAAACATTTTA+AGG | + | chr5.4:12100566-12100585 | MS.gene59351:intron | 20.0% |
| !!! | ATGTTTAGTTTTGTTTTCTA+AGG | - | chr5.4:12100428-12100447 | None:intergenic | 20.0% |
| !!! | CACAAAAAATCAATTTTAGA+TGG | - | chr5.4:12100079-12100098 | None:intergenic | 20.0% |
| !!! | GTTTATGTCAATGATTTTAA+GGG | + | chr5.4:12100128-12100147 | MS.gene59351:intron | 20.0% |
| !!! | TCATTTTGGAAACATTTTAA+GGG | + | chr5.4:12100567-12100586 | MS.gene59351:intron | 20.0% |
| !!! | TGTTTAGTTTTGTTTTCTAA+GGG | - | chr5.4:12100427-12100446 | None:intergenic | 20.0% |
| !!! | TGTTTATGTCAATGATTTTA+AGG | + | chr5.4:12100127-12100146 | MS.gene59351:intron | 20.0% |
| !!! | TTCATATTTGATAGTTTAAC+TGG | + | chr5.4:12099518-12099537 | MS.gene59351:intron | 20.0% |
| !!! | TTTTGTCAAAAAAGAAATGT+AGG | + | chr5.4:12100808-12100827 | MS.gene59351:intron | 20.0% |
| !!! | TTTTTAAATGTTGTTTCGTT+TGG | + | chr5.4:12098589-12098608 | MS.gene59351:intron | 20.0% |
| ! | AAAAGTTTATAAGTGTGTGT+AGG | - | chr5.4:12099246-12099265 | None:intergenic | 25.0% |
| ! | AAAGTAGAAAGAGATGTTAT+TGG | + | chr5.4:12100601-12100620 | MS.gene59351:intron | 25.0% |
| ! | AACATTAACTAACAAAACCA+TGG | - | chr5.4:12098012-12098031 | None:intergenic | 25.0% |
| ! | AAGTTTAGAAACTATTCTCA+AGG | - | chr5.4:12100320-12100339 | None:intergenic | 25.0% |
| ! | AGTCTTCAAGAAAAATAAAC+TGG | + | chr5.4:12100450-12100469 | MS.gene59351:intron | 25.0% |
| ! | CAATTACATGGTAGAAATAA+TGG | + | chr5.4:12099344-12099363 | MS.gene59351:intron | 25.0% |
| ! | CAGACTAATTTCAACTAATA+CGG | - | chr5.4:12098560-12098579 | None:intergenic | 25.0% |
| ! | GAAAGACTAATTAAAACAAC+AGG | - | chr5.4:12100680-12100699 | None:intergenic | 25.0% |
| ! | GATTAACAAAAAGGAAAACA+TGG | + | chr5.4:12097470-12097489 | MS.gene59351:CDS | 25.0% |
| ! | GTCTTCAAGAAAAATAAACT+GGG | + | chr5.4:12100451-12100470 | MS.gene59351:intron | 25.0% |
| ! | TATGTTTGCAATTTGCAAAT+GGG | + | chr5.4:12098776-12098795 | MS.gene59351:intron | 25.0% |
| ! | TCCTAAAAGTTTATGCAAAT+TGG | - | chr5.4:12099393-12099412 | None:intergenic | 25.0% |
| ! | TCTAAGCTCAATTATTTGAA+GGG | + | chr5.4:12100878-12100897 | MS.gene59351:intron | 25.0% |
| ! | TGAAATCAGTTTACATTACA+AGG | + | chr5.4:12099067-12099086 | MS.gene59351:intron | 25.0% |
| ! | TGAATGAGATTAAAGGAAAA+TGG | - | chr5.4:12097673-12097692 | None:intergenic | 25.0% |
| ! | TTAAGTGAACAAGAATTAGA+AGG | + | chr5.4:12099641-12099660 | MS.gene59351:intron | 25.0% |
| ! | TTCTAAGCTCAATTATTTGA+AGG | + | chr5.4:12100877-12100896 | MS.gene59351:intron | 25.0% |
| ! | TTGAGAATAGTTTCTAAACT+TGG | + | chr5.4:12100319-12100338 | MS.gene59351:intron | 25.0% |
| !! | ATTCAACTTTAAAAGTGATG+TGG | - | chr5.4:12099210-12099229 | None:intergenic | 25.0% |
| !! | CATTATTTAAAGCATTTCCT+GGG | + | chr5.4:12098828-12098847 | MS.gene59351:intron | 25.0% |
| !! | CTTAAAAGTATAGTTAGAGA+GGG | - | chr5.4:12099706-12099725 | None:intergenic | 25.0% |
| !! | TAAACTTGGCATTTTTGTAT+TGG | + | chr5.4:12100333-12100352 | MS.gene59351:intron | 25.0% |
| !! | TCCAATTTGCATAAACTTTT+AGG | + | chr5.4:12099389-12099408 | MS.gene59351:intron | 25.0% |
| !!! | AAAAGGAAGGTACAAATTTT+GGG | + | chr5.4:12097509-12097528 | MS.gene59351:CDS | 25.0% |
| !!! | CATCACTTTTAAAGTTGAAT+TGG | + | chr5.4:12099210-12099229 | MS.gene59351:intron | 25.0% |
| !!! | GATTGGTTTTATTTTGAATG+TGG | + | chr5.4:12098731-12098750 | MS.gene59351:intron | 25.0% |
| !!! | TAAAAGTTGAGCCTTTTTTA+GGG | - | chr5.4:12100010-12100029 | None:intergenic | 25.0% |
| !!! | TCTTTGTTGTTTGCATAATA+CGG | + | chr5.4:12099033-12099052 | MS.gene59351:intron | 25.0% |
| !!! | TTGTTAATTTGTTATTGGTC+TGG | + | chr5.4:12098079-12098098 | MS.gene59351:intron | 25.0% |
| !!! | TTTTTTGTCAAGTCTTTTTG+TGG | - | chr5.4:12098476-12098495 | None:intergenic | 25.0% |
| AAAAAGGAAAACATGGATTC+AGG | + | chr5.4:12097477-12097496 | MS.gene59351:CDS | 30.0% | |
| AAGACTTAATTGAACGCTTA+TGG | - | chr5.4:12098428-12098447 | None:intergenic | 30.0% | |
| AATATGAAGAACATTGCAAC+AGG | - | chr5.4:12099506-12099525 | None:intergenic | 30.0% | |
| AATTGTAAACCAACGAATCT+CGG | - | chr5.4:12098977-12098996 | None:intergenic | 30.0% | |
| ATATGAAGAACATTGCAACA+GGG | - | chr5.4:12099505-12099524 | None:intergenic | 30.0% | |
| ATATTGCTGATCAAACTCAA+TGG | + | chr5.4:12098197-12098216 | MS.gene59351:intron | 30.0% | |
| ATGTTTGCAATTTGCAAATG+GGG | + | chr5.4:12098777-12098796 | MS.gene59351:intron | 30.0% | |
| CTATGTTTGCAATTTGCAAA+TGG | + | chr5.4:12098775-12098794 | MS.gene59351:intron | 30.0% | |
| CTTATGTGAAAAAAACGAGT+TGG | + | chr5.4:12100923-12100942 | MS.gene59351:intron | 30.0% | |
| GAATTTCCTGTACTAAATAG+AGG | - | chr5.4:12099670-12099689 | None:intergenic | 30.0% | |
| GATGCAATCTAGGAATTTAA+AGG | - | chr5.4:12100219-12100238 | None:intergenic | 30.0% | |
| GGAGAAATTTAACTCATGTT+TGG | - | chr5.4:12098455-12098474 | None:intergenic | 30.0% | |
| TAATTGGTGAAGATCCATTA+TGG | + | chr5.4:12099950-12099969 | MS.gene59351:intron | 30.0% | |
| TAGCATCTTGGATCAATTAA+AGG | - | chr5.4:12099606-12099625 | None:intergenic | 30.0% | |
| TATGATGCAGTAAATACATC+AGG | - | chr5.4:12101037-12101056 | None:intergenic | 30.0% | |
| TCTTCTTTCCTTGAATCTTT+GGG | - | chr5.4:12099566-12099585 | None:intergenic | 30.0% | |
| TGTCTATTTACTTACACTGT+TGG | + | chr5.4:12099274-12099293 | MS.gene59351:intron | 30.0% | |
| TTAATTGATCCAAGATGCTA+AGG | + | chr5.4:12099606-12099625 | MS.gene59351:intron | 30.0% | |
| TTACTTGAAATGATGAAGCT+CGG | + | chr5.4:12098050-12098069 | MS.gene59351:intron | 30.0% | |
| TTCTTCTTTCCTTGAATCTT+TGG | - | chr5.4:12099567-12099586 | None:intergenic | 30.0% | |
| ! | AATCAATTTTAGATGGAGGT+TGG | - | chr5.4:12100072-12100091 | None:intergenic | 30.0% |
| ! | AGAAAATACAGGTTCTAGTT+TGG | + | chr5.4:12099983-12100002 | MS.gene59351:intron | 30.0% |
| ! | ATCAATTTTAGATGGAGGTT+GGG | - | chr5.4:12100071-12100090 | None:intergenic | 30.0% |
| ! | CCTCTCTAACTATACTTTTA+AGG | + | chr5.4:12099704-12099723 | MS.gene59351:intron | 30.0% |
| ! | CCTTAAAAGTATAGTTAGAG+AGG | - | chr5.4:12099707-12099726 | None:intergenic | 30.0% |
| ! | GCATTATTTAAAGCATTTCC+TGG | + | chr5.4:12098827-12098846 | MS.gene59351:intron | 30.0% |
| ! | TTGAATTTAAGACTGAGCTA+AGG | - | chr5.4:12100985-12101004 | None:intergenic | 30.0% |
| !! | GAAAAGGAAGGTACAAATTT+TGG | + | chr5.4:12097508-12097527 | MS.gene59351:CDS | 30.0% |
| !! | TGCATAAACTTTTAGGAAGA+TGG | + | chr5.4:12099396-12099415 | MS.gene59351:intron | 30.0% |
| !!! | CTAAAAGTTGAGCCTTTTTT+AGG | - | chr5.4:12100011-12100030 | None:intergenic | 30.0% |
| !!! | GAGATCTTGTTTTCTTTGAA+AGG | + | chr5.4:12099167-12099186 | MS.gene59351:intron | 30.0% |
| AAAACCAATCAACAAGACTC+AGG | - | chr5.4:12098721-12098740 | None:intergenic | 35.0% | |
| AATGCAGAAATAGTGTGGTT+AGG | + | chr5.4:12099906-12099925 | MS.gene59351:intron | 35.0% | |
| AATGTTTGAATAGAGGACTC+AGG | - | chr5.4:12100480-12100499 | None:intergenic | 35.0% | |
| AATTTGCAAATGGGGTTGTT+TGG | + | chr5.4:12098785-12098804 | MS.gene59351:intron | 35.0% | |
| AGATAATCACTTGACTCTCA+AGG | + | chr5.4:12100734-12100753 | MS.gene59351:intron | 35.0% | |
| AGGTTTCCTCTATTTAGTAC+AGG | + | chr5.4:12099661-12099680 | MS.gene59351:intron | 35.0% | |
| ATAGTTTAACTGGAAGTTCC+TGG | + | chr5.4:12099528-12099547 | MS.gene59351:intron | 35.0% | |
| ATTGTAAACCAACGAATCTC+GGG | - | chr5.4:12098976-12098995 | None:intergenic | 35.0% | |
| CAAACTTGTGACGAATTAGA+TGG | + | chr5.4:12099771-12099790 | MS.gene59351:intron | 35.0% | |
| CAAGTAGTTAGTTATGTCAG+TGG | - | chr5.4:12098253-12098272 | None:intergenic | 35.0% | |
| CAATTATGACCTTAGCATCT+TGG | - | chr5.4:12099618-12099637 | None:intergenic | 35.0% | |
| CTTCGTCTTGGATCAATTAA+AGG | - | chr5.4:12099736-12099755 | None:intergenic | 35.0% | |
| GATAATCACTTGACTCTCAA+GGG | + | chr5.4:12100735-12100754 | MS.gene59351:intron | 35.0% | |
| GATCAATTAAAGGACACTCT+GGG | - | chr5.4:12099596-12099615 | None:intergenic | 35.0% | |
| GTCATGTCAAGTCATAAGTA+TGG | + | chr5.4:12099806-12099825 | MS.gene59351:intron | 35.0% | |
| TAATCTGTGTGTGTAGGAAA+TGG | + | chr5.4:12097757-12097776 | MS.gene59351:intron | 35.0% | |
| TACAATCACCCAAAGATTCA+AGG | + | chr5.4:12099555-12099574 | MS.gene59351:intron | 35.0% | |
| TAGATGTAATCTGTGTGTGT+AGG | + | chr5.4:12097751-12097770 | MS.gene59351:intron | 35.0% | |
| TTTCCAAAATGATGACACAG+TGG | - | chr5.4:12100559-12100578 | None:intergenic | 35.0% | |
| ! | AACATGGATTCAGGTTTGTT+TGG | + | chr5.4:12097486-12097505 | MS.gene59351:CDS | 35.0% |
| ! | GATTCAGGTTTGTTTGGAAA+AGG | + | chr5.4:12097492-12097511 | MS.gene59351:CDS | 35.0% |
| ! | TCTAGTTTGGTCCCTAAAAA+AGG | + | chr5.4:12099996-12100015 | MS.gene59351:intron | 35.0% |
| ! | TTTTCCTACATAAGTCTCAC+AGG | - | chr5.4:12098913-12098932 | None:intergenic | 35.0% |
| !! | CCACACTATTTCTGCATTAT+CGG | - | chr5.4:12099904-12099923 | None:intergenic | 35.0% |
| AAAAAACCTGGGAACCAGTT+TGG | + | chr5.4:12100400-12100419 | MS.gene59351:intron | 40.0% | |
| AAGATCCATTATGGTCACTG+AGG | + | chr5.4:12099959-12099978 | MS.gene59351:intron | 40.0% | |
| ACAAAACCATGGATCGAGAA+AGG | - | chr5.4:12098001-12098020 | None:intergenic | 40.0% | |
| ACAAAGGAAAAGAAGCGATG+CGG | + | chr5.4:12101100-12101119 | MS.gene59351:CDS | 40.0% | |
| ACAGGAATGCAAATGTGAAG+AGG | - | chr5.4:12100662-12100681 | None:intergenic | 40.0% | |
| AGAAACGGTACCAGTAAACA+TGG | - | chr5.4:12097568-12097587 | None:intergenic | 40.0% | |
| AGTGATGTGGATGCATAAAG+AGG | - | chr5.4:12099197-12099216 | None:intergenic | 40.0% | |
| ATAGCATCATCTCTAACACC+AGG | - | chr5.4:12097905-12097924 | None:intergenic | 40.0% | |
| CCGATAATGCAGAAATAGTG+TGG | + | chr5.4:12099901-12099920 | MS.gene59351:intron | 40.0% | |
| CTATTCTCAAGGACCAGAAT+AGG | - | chr5.4:12100309-12100328 | None:intergenic | 40.0% | |
| GAATTGACAAGTGATGTTCC+TGG | + | chr5.4:12097884-12097903 | MS.gene59351:CDS | 40.0% | |
| GATGACACGACTCAATTACA+TGG | + | chr5.4:12099332-12099351 | MS.gene59351:intron | 40.0% | |
| GCTCCTTGAGAAAAAAACCT+GGG | + | chr5.4:12100389-12100408 | MS.gene59351:intron | 40.0% | |
| GGAATTTAGCGAAAGTAGAG+AGG | + | chr5.4:12100756-12100775 | MS.gene59351:intron | 40.0% | |
| GGATCAATTAAAGGACACTC+TGG | - | chr5.4:12099597-12099616 | None:intergenic | 40.0% | |
| GTCACTGAGGAAGAAAATAC+AGG | + | chr5.4:12099972-12099991 | MS.gene59351:intron | 40.0% | |
| GTCCTCGCAACAAATAAACT+AGG | + | chr5.4:12100030-12100049 | MS.gene59351:intron | 40.0% | |
| GTGATGTGGATGCATAAAGA+GGG | - | chr5.4:12099196-12099215 | None:intergenic | 40.0% | |
| GTGTCATCACGAGTTAGTAA+AGG | - | chr5.4:12099320-12099339 | None:intergenic | 40.0% | |
| TCAAACTCAATGGTCCTGTT+TGG | + | chr5.4:12098207-12098226 | MS.gene59351:intron | 40.0% | |
| TCAATGGTCCTGTTTGGATT+GGG | + | chr5.4:12098213-12098232 | MS.gene59351:intron | 40.0% | |
| TCAGGAAGAAGATGCAATCT+AGG | - | chr5.4:12100229-12100248 | None:intergenic | 40.0% | |
| TCGTATAACCCAATCCAAAC+AGG | - | chr5.4:12098224-12098243 | None:intergenic | 40.0% | |
| TGCTCCTTGAGAAAAAAACC+TGG | + | chr5.4:12100388-12100407 | MS.gene59351:intron | 40.0% | |
| TTCTTCCTCAGTGACCATAA+TGG | - | chr5.4:12099967-12099986 | None:intergenic | 40.0% | |
| ! | AGACTCTTTGAGAGAGCTTA+TGG | + | chr5.4:12098275-12098294 | MS.gene59351:intron | 40.0% |
| ! | ATGAACTGTTAGCTTCGTCT+TGG | - | chr5.4:12099748-12099767 | None:intergenic | 40.0% |
| ! | CAGGTTTGTTTGGAAAAGGA+AGG | + | chr5.4:12097496-12097515 | MS.gene59351:CDS | 40.0% |
| ! | CATCATATTTCAGAGAGCAC+AGG | + | chr5.4:12101050-12101069 | MS.gene59351:intron | 40.0% |
| ! | GTCCTAGTTTATTTGTTGCG+AGG | - | chr5.4:12100035-12100054 | None:intergenic | 40.0% |
| ! | TGTCCACTGTGTCATCATTT+TGG | + | chr5.4:12100553-12100572 | MS.gene59351:intron | 40.0% |
| ! | TTCCTTTGTCAGCTTGCTTA+AGG | - | chr5.4:12101089-12101108 | None:intergenic | 40.0% |
| !! | CGATTTTGCTTCTCGCTTTT+TGG | + | chr5.4:12097541-12097560 | MS.gene59351:CDS | 40.0% |
| !! | GCTTTTTGGTCCATGTTTAC+TGG | + | chr5.4:12097555-12097574 | MS.gene59351:CDS | 40.0% |
| !! | TGTTTTCTAAGGGACCAAAC+TGG | - | chr5.4:12100417-12100436 | None:intergenic | 40.0% |
| !!! | GTTCCCAGGTTTTTTTCTCA+AGG | - | chr5.4:12100395-12100414 | None:intergenic | 40.0% |
| AAAGCCTCTTGCCAAAACCT+CGG | - | chr5.4:12097848-12097867 | None:intergenic | 45.0% | |
| AAGGAAAACGAACCGTGGAT+TGG | - | chr5.4:12097982-12098001 | None:intergenic | 45.0% | |
| AAGGTCCTTCAATAACGTCC+AGG | - | chr5.4:12100267-12100286 | None:intergenic | 45.0% | |
| AATGTGAAGAGGCTCAGATG+CGG | - | chr5.4:12100651-12100670 | None:intergenic | 45.0% | |
| ACATCGAGATCGTCGTGAAT+CGG | - | chr5.4:12097639-12097658 | None:intergenic | 45.0% | |
| ACCAGACCAACGAAGAGAAA+CGG | - | chr5.4:12097583-12097602 | None:intergenic | 45.0% | |
| AGAAAGTGGTGAGGCATATG+TGG | + | chr5.4:12097789-12097808 | MS.gene59351:CDS | 45.0% | |
| AGCCTTAAGCAAGCTGACAA+AGG | + | chr5.4:12101084-12101103 | MS.gene59351:CDS | 45.0% | |
| ATAACGTCCAGGACGAAGAA+AGG | - | chr5.4:12100256-12100275 | None:intergenic | 45.0% | |
| ATGAAGCAAAGCTGTCTGTC+TGG | + | chr5.4:12099866-12099885 | MS.gene59351:intron | 45.0% | |
| ATTGAAGGACCTTGGAGAAC+TGG | + | chr5.4:12100274-12100293 | MS.gene59351:intron | 45.0% | |
| CAAATGGGGTTGTTTGGTTG+GGG | + | chr5.4:12098791-12098810 | MS.gene59351:intron | 45.0% | |
| CCAATCAACAAGACTCAGGT+TGG | - | chr5.4:12098717-12098736 | None:intergenic | 45.0% | |
| CTCAATGGTCCTGTTTGGAT+TGG | + | chr5.4:12098212-12098231 | MS.gene59351:intron | 45.0% | |
| CTGGTGTTCAAGACCTATTC+TGG | + | chr5.4:12100293-12100312 | MS.gene59351:intron | 45.0% | |
| GAAAGTGGTGAGGCATATGT+GGG | + | chr5.4:12097790-12097809 | MS.gene59351:CDS | 45.0% | |
| GCAAATGGGGTTGTTTGGTT+GGG | + | chr5.4:12098790-12098809 | MS.gene59351:intron | 45.0% | |
| GCAGAAATAGTGTGGTTAGG+AGG | + | chr5.4:12099909-12099928 | MS.gene59351:intron | 45.0% | |
| GGCTTCTTCGCATATGTTAC+TGG | - | chr5.4:12100964-12100983 | None:intergenic | 45.0% | |
| GTCAGTCTGTAGTCATTGTC+AGG | - | chr5.4:12100155-12100174 | None:intergenic | 45.0% | |
| GTTTAACTGGAAGTTCCTGG+TGG | + | chr5.4:12099531-12099550 | MS.gene59351:intron | 45.0% | |
| TCTGTGTGTGTAGGAAATGG+AGG | + | chr5.4:12097760-12097779 | MS.gene59351:intron | 45.0% | |
| TCTTGAACACCAGTTCTCCA+AGG | - | chr5.4:12100286-12100305 | None:intergenic | 45.0% | |
| TGCAAATGGGGTTGTTTGGT+TGG | + | chr5.4:12098789-12098808 | MS.gene59351:intron | 45.0% | |
| TGGACGTTATTGAAGGACCT+TGG | + | chr5.4:12100266-12100285 | MS.gene59351:intron | 45.0% | |
| TGTGTAGGAAATGGAGGAGA+GGG | + | chr5.4:12097766-12097785 | MS.gene59351:intron | 45.0% | |
| TTCGCCTGTGAGACTTATGT+AGG | + | chr5.4:12098906-12098925 | MS.gene59351:intron | 45.0% | |
| TTCGTCCTGGACGTTATTGA+AGG | + | chr5.4:12100259-12100278 | MS.gene59351:intron | 45.0% | |
| TTGCATGAGACTTCTTACCC+AGG | - | chr5.4:12098848-12098867 | None:intergenic | 45.0% | |
| TTTAGATGGAGGTTGGGAGA+GGG | - | chr5.4:12100065-12100084 | None:intergenic | 45.0% | |
| ! | AGTATCGAGGTCACTGGATA+AGG | - | chr5.4:12097616-12097635 | None:intergenic | 45.0% |
| ! | CGTTTTCCTTTCTCGATCCA+TGG | + | chr5.4:12097992-12098011 | MS.gene59351:intron | 45.0% |
| ! | TTTTAGATGGAGGTTGGGAG+AGG | - | chr5.4:12100066-12100085 | None:intergenic | 45.0% |
| !! | AAACGAACCGTGGATTGGAT+AGG | - | chr5.4:12097977-12097996 | None:intergenic | 45.0% |
| !! | CCAACCTGAGTCTTGTTGAT+TGG | + | chr5.4:12098714-12098733 | MS.gene59351:intron | 45.0% |
| !! | GTTTTGGCAAGAGGCTTTTG+AGG | + | chr5.4:12097850-12097869 | MS.gene59351:CDS | 45.0% |
| !! | TTTAAAAGTTAAATAATAAT+TGG | + | chr5.4:12099934-12099953 | MS.gene59351:intron | 5.0% |
| AATGGAGGAGAGGGAGAAAG+TGG | + | chr5.4:12097775-12097794 | MS.gene59351:CDS | 50.0% | |
| ACCGTTTCTCTTCGTTGGTC+TGG | + | chr5.4:12097579-12097598 | MS.gene59351:CDS | 50.0% | |
| ATGTGTACACCAACAGCCGT+AGG | + | chr5.4:12097813-12097832 | MS.gene59351:CDS | 50.0% | |
| CGAGAAAGGAAAACGAACCG+TGG | - | chr5.4:12097987-12098006 | None:intergenic | 50.0% | |
| CTGGTACCGTTTCTCTTCGT+TGG | + | chr5.4:12097574-12097593 | MS.gene59351:CDS | 50.0% | |
| GACGGCGGCGATTAACAAAA+AGG | + | chr5.4:12097461-12097480 | MS.gene59351:CDS | 50.0% | |
| GTGTGTAGGAAATGGAGGAG+AGG | + | chr5.4:12097765-12097784 | MS.gene59351:intron | 50.0% | |
| TCATGCTTCCCGAGATTCGT+TGG | + | chr5.4:12098965-12098984 | MS.gene59351:intron | 50.0% | |
| TCCACCTCCTATCCAATCCA+CGG | + | chr5.4:12097967-12097986 | MS.gene59351:CDS | 50.0% | |
| TGAAACGCCTTTCTTCGTCC+TGG | + | chr5.4:12100246-12100265 | MS.gene59351:intron | 50.0% | |
| TTTGGGTGATTGTAGCCACC+AGG | - | chr5.4:12099549-12099568 | None:intergenic | 50.0% | |
| !! | AATCGGAGTATCGAGGTCAC+TGG | - | chr5.4:12097622-12097641 | None:intergenic | 50.0% |
| !! | AGGACGAAGAAAGGCGTTTC+AGG | - | chr5.4:12100247-12100266 | None:intergenic | 50.0% |
| ACACCAACAGCCGTAGGATC+AGG | + | chr5.4:12097819-12097838 | MS.gene59351:CDS | 55.0% | |
| ACCTCGGCAACCTGATCCTA+CGG | - | chr5.4:12097832-12097851 | None:intergenic | 55.0% | |
| AGGAGAGGGAGAAAGTGGTG+AGG | + | chr5.4:12097780-12097799 | MS.gene59351:CDS | 55.0% | |
| CAACCTGATCCTACGGCTGT+TGG | - | chr5.4:12097825-12097844 | None:intergenic | 55.0% | |
| GGCTGTGTCAGCAAACAGAG+AGG | + | chr5.4:12099365-12099384 | MS.gene59351:intron | 55.0% | |
| GGTCCTAGACCTAGTGTTGC+CGG | + | chr5.4:12100622-12100641 | MS.gene59351:intron | 55.0% | |
| GTCCTAGACCTAGTGTTGCC+GGG | + | chr5.4:12100623-12100642 | MS.gene59351:intron | 55.0% | |
| ! | AAGGGACCAAACTGGTTCCC+AGG | - | chr5.4:12100409-12100428 | None:intergenic | 55.0% |
| !! | ACCGTGGATTGGATAGGAGG+TGG | - | chr5.4:12097971-12097990 | None:intergenic | 55.0% |
| !! | CGAACCGTGGATTGGATAGG+AGG | - | chr5.4:12097974-12097993 | None:intergenic | 55.0% |
| !! | CGTCGTGAATCGGAGTATCG+AGG | - | chr5.4:12097629-12097648 | None:intergenic | 55.0% |
| !! | GGATCAGGTTGCCGAGGTTT+TGG | + | chr5.4:12097834-12097853 | MS.gene59351:CDS | 55.0% |
| !! | GTTGCCGAGGTTTTGGCAAG+AGG | + | chr5.4:12097841-12097860 | MS.gene59351:CDS | 55.0% |
| CACCCGGCAACACTAGGTCT+AGG | - | chr5.4:12100628-12100647 | None:intergenic | 60.0% | |
| TTAATCGCCGCCGTCGTCGT+TGG | - | chr5.4:12097456-12097475 | None:intergenic | 60.0% | |
| ! | CGATGGGCTTCCAACGACGA+CGG | + | chr5.4:12097443-12097462 | MS.gene59351:CDS | 60.0% |
| AGAGGCTCAGATGCGGCACC+CGG | - | chr5.4:12100644-12100663 | None:intergenic | 65.0% | |
| ATGCGGCACCCGGCAACACT+AGG | - | chr5.4:12100634-12100653 | None:intergenic | 65.0% | |
| TGGGCTTCCAACGACGACGG+CGG | + | chr5.4:12097446-12097465 | MS.gene59351:CDS | 65.0% | |
| ! | GCCGTAGGATCAGGTTGCCG+AGG | + | chr5.4:12097828-12097847 | MS.gene59351:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12097432 | 12101131 | 12097432 | ID=MS.gene59351 |
| chr5.4 | mRNA | 12097432 | 12101131 | 12097432 | ID=MS.gene59351.t1;Parent=MS.gene59351 |
| chr5.4 | exon | 12097432 | 12097662 | 12097432 | ID=MS.gene59351.t1.exon1;Parent=MS.gene59351.t1 |
| chr5.4 | CDS | 12097432 | 12097662 | 12097432 | ID=cds.MS.gene59351.t1;Parent=MS.gene59351.t1 |
| chr5.4 | exon | 12097773 | 12097988 | 12097773 | ID=MS.gene59351.t1.exon2;Parent=MS.gene59351.t1 |
| chr5.4 | CDS | 12097773 | 12097988 | 12097773 | ID=cds.MS.gene59351.t1;Parent=MS.gene59351.t1 |
| chr5.4 | exon | 12101063 | 12101131 | 12101063 | ID=MS.gene59351.t1.exon3;Parent=MS.gene59351.t1 |
| chr5.4 | CDS | 12101063 | 12101131 | 12101063 | ID=cds.MS.gene59351.t1;Parent=MS.gene59351.t1 |
| Gene Sequence |
| Protein sequence |
