Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59352.t1 | XP_003611972.1 | 97.1 | 487 | 14 | 0 | 1 | 487 | 1 | 487 | 3.60E-257 | 897.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59352.t1 | O23215 | 72.8 | 437 | 101 | 7 | 1 | 428 | 1 | 428 | 8.8e-164 | 578.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59352.t1 | G7KC98 | 97.1 | 487 | 14 | 0 | 1 | 487 | 1 | 487 | 2.6e-257 | 897.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056830 | MS.gene59352 | 0.801885 | 7.29E-49 | -1.69E-46 |
| MS.gene05904 | MS.gene59352 | 0.820337 | 7.23E-53 | -1.69E-46 |
| MS.gene059872 | MS.gene59352 | 0.813914 | 2.01E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59352.t1 | MTR_5g019910 | 98.152 | 487 | 9 | 0 | 1 | 487 | 1 | 487 | 0.0 | 987 |
| MS.gene59352.t1 | MTR_7g091230 | 34.184 | 196 | 121 | 4 | 134 | 323 | 108 | 301 | 5.35e-21 | 94.0 |
| MS.gene59352.t1 | MTR_3g040300 | 33.333 | 195 | 121 | 4 | 136 | 323 | 66 | 258 | 4.74e-20 | 90.5 |
| MS.gene59352.t1 | MTR_3g037190 | 32.653 | 196 | 124 | 4 | 134 | 323 | 108 | 301 | 1.47e-19 | 89.7 |
| MS.gene59352.t1 | MTR_1g053065 | 28.339 | 307 | 184 | 12 | 23 | 323 | 24 | 300 | 1.56e-19 | 89.7 |
| MS.gene59352.t1 | MTR_3g040150 | 32.243 | 214 | 131 | 6 | 117 | 323 | 90 | 296 | 5.26e-19 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59352.t1 | AT4G36650 | 87.240 | 337 | 36 | 3 | 1 | 334 | 1 | 333 | 0.0 | 587 |
| MS.gene59352.t1 | AT4G36650 | 73.600 | 375 | 79 | 6 | 1 | 363 | 1 | 367 | 0.0 | 521 |
| MS.gene59352.t1 | AT2G41630 | 35.678 | 199 | 117 | 5 | 132 | 323 | 106 | 300 | 1.07e-23 | 101 |
| MS.gene59352.t1 | AT3G10330 | 34.328 | 201 | 113 | 6 | 134 | 323 | 108 | 300 | 2.81e-21 | 94.7 |
Find 134 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAATTCATTTCAGTATTC+TGG | 0.159062 | 5.4:-12106207 | None:intergenic |
| GATTGCAAGTGTCGAATATT+TGG | 0.233569 | 5.4:-12106162 | None:intergenic |
| CTCAGCTGCCGCCATATATT+TGG | 0.241130 | 5.4:+12105570 | MS.gene59352:CDS |
| CCCACAACCTTAATTGCTTC+TGG | 0.251621 | 5.4:+12105754 | MS.gene59352:CDS |
| ACCAGTTACTTTGCAAATTT+CGG | 0.256850 | 5.4:-12105626 | None:intergenic |
| AATATAACCTGAAGGGTTCT+AGG | 0.270602 | 5.4:-12103256 | None:intergenic |
| TATAGAGGTTACTTCTTCTT+TGG | 0.274158 | 5.4:+12105804 | MS.gene59352:CDS |
| GATATAGAATTGCTGTTAAT+AGG | 0.275872 | 5.4:-12105002 | None:intergenic |
| GTCTTCTTCTTCGTTGGTTT+CGG | 0.282449 | 5.4:-12102891 | None:intergenic |
| TGCTACTGCTGCTCTTGTTC+AGG | 0.283370 | 5.4:+12103213 | MS.gene59352:CDS |
| CCTTGCGCCGCTGAACAGTA+TGG | 0.285793 | 5.4:-12102695 | None:intergenic |
| GTAATTCTTTATACACTTTA+CGG | 0.287548 | 5.4:-12105666 | None:intergenic |
| GTGTTGTTGTTGATAATCTT+AGG | 0.297419 | 5.4:+12103062 | MS.gene59352:CDS |
| AGAACGTCCAGAAGCAATTA+AGG | 0.300940 | 5.4:-12105761 | None:intergenic |
| CGGGAAATACATCAAGATAC+TGG | 0.318001 | 5.4:+12104956 | MS.gene59352:CDS |
| GCGGCAGCTGAGATGCTAAT+TGG | 0.320894 | 5.4:-12105559 | None:intergenic |
| CTGCTACTTGTTTGAGAAAT+CGG | 0.322311 | 5.4:+12103176 | MS.gene59352:CDS |
| CTCTGTTATGAGGTCGCTTT+CGG | 0.324574 | 5.4:+12106119 | MS.gene59352:CDS |
| ATAAAGAATTACTGGAGAAT+TGG | 0.329959 | 5.4:+12105677 | MS.gene59352:CDS |
| GTGACCTCTACCATGGGTTC+AGG | 0.330609 | 5.4:-12106027 | None:intergenic |
| GTAAAGCGGGCTGGGCTCTA+AGG | 0.334203 | 5.4:-12102957 | None:intergenic |
| TAAAGTGTATAAAGAATTAC+TGG | 0.348175 | 5.4:+12105669 | MS.gene59352:CDS |
| GGTTTGTTTGGTTTAAATTC+CGG | 0.356896 | 5.4:-12105841 | None:intergenic |
| CTATTCAGCAGTCAACGTTT+TGG | 0.357039 | 5.4:+12105911 | MS.gene59352:CDS |
| TTGGTTTGGTTGAGAGTGGG+GGG | 0.359289 | 5.4:-12102866 | None:intergenic |
| CTACCATGGGTTCAGGTTGT+TGG | 0.366695 | 5.4:-12106020 | None:intergenic |
| TTCTTCGTTGGTTTCGGTGT+TGG | 0.368521 | 5.4:-12102885 | None:intergenic |
| GCCCGCTCCGGAGGAACAGC+TGG | 0.371273 | 5.4:-12105727 | None:intergenic |
| TAAAGAATTACTGGAGAATT+GGG | 0.376158 | 5.4:+12105678 | MS.gene59352:CDS |
| TCGGCCTCATTAGGTTTGTT+TGG | 0.386243 | 5.4:-12105853 | None:intergenic |
| TCCATTGAATCTAAAACATT+CGG | 0.388238 | 5.4:-12105973 | None:intergenic |
| TTTGGATTCAGAAAATTTGC+CGG | 0.392454 | 5.4:+12105822 | MS.gene59352:CDS |
| CGTTGGTTTCGGTGTTGGTT+TGG | 0.400396 | 5.4:-12102880 | None:intergenic |
| GTGTTGGTTTGGTTGAGAGT+GGG | 0.400909 | 5.4:-12102869 | None:intergenic |
| GCCGAAATTTGCAAAGTAAC+TGG | 0.401723 | 5.4:+12105625 | MS.gene59352:CDS |
| TTTGGGTCGCACTGGGAAGT+TGG | 0.408622 | 5.4:-12105939 | None:intergenic |
| TCAAGAACCTAGAACCCTTC+AGG | 0.414329 | 5.4:+12103249 | MS.gene59352:CDS |
| AATGTGGCACAAAAGGAAAT+CGG | 0.414393 | 5.4:+12104936 | MS.gene59352:CDS |
| TGCCGCCAATGTGGCACAAA+AGG | 0.415436 | 5.4:+12104929 | MS.gene59352:CDS |
| TTGGGTCGCACTGGGAAGTT+GGG | 0.415514 | 5.4:-12105938 | None:intergenic |
| TTAGATTCAATGGATATTGA+TGG | 0.416703 | 5.4:+12105982 | MS.gene59352:CDS |
| GAATGGGTCTTCTTCTTCGT+TGG | 0.417262 | 5.4:-12102897 | None:intergenic |
| AACAGCTGGGGTGTAATTAG+AGG | 0.420498 | 5.4:-12105713 | None:intergenic |
| ATAGATGTTTCGTCGATACT+TGG | 0.424209 | 5.4:+12103100 | MS.gene59352:CDS |
| ATGAAGCCCGTGGGCTCGAA+TGG | 0.428456 | 5.4:-12102914 | None:intergenic |
| TACTTTGCAAATTTCGGCCT+GGG | 0.429283 | 5.4:-12105620 | None:intergenic |
| TGGACGTTCTTCAACAACTA+AGG | 0.433325 | 5.4:+12105774 | MS.gene59352:CDS |
| TGAAGAAGGGTGCAAAATCT+TGG | 0.434378 | 5.4:-12105035 | None:intergenic |
| TGTTGTTGTTGATAATCTTA+GGG | 0.437061 | 5.4:+12103063 | MS.gene59352:CDS |
| CAGATTTATTGAGCTGAAGA+AGG | 0.440283 | 5.4:-12105049 | None:intergenic |
| TAGTTGGCAAGCCAAATATA+TGG | 0.445296 | 5.4:-12105581 | None:intergenic |
| GGTGTTGGTTTGGTTGAGAG+TGG | 0.447403 | 5.4:-12102870 | None:intergenic |
| ACTGCTGAATAGCCGATGAT+TGG | 0.448535 | 5.4:-12105900 | None:intergenic |
| CGAGACATAGGGGATTATCT+TGG | 0.451200 | 5.4:-12102826 | None:intergenic |
| TGTTGGTTTGGTTGAGAGTG+GGG | 0.456506 | 5.4:-12102868 | None:intergenic |
| TGTTTCGTCGATACTTGGAT+TGG | 0.463509 | 5.4:+12103105 | MS.gene59352:CDS |
| CCCAGCTGTTCCTCCGGAGC+GGG | 0.465744 | 5.4:+12105726 | MS.gene59352:CDS |
| GTTGGTTTGGTTGAGAGTGG+GGG | 0.466278 | 5.4:-12102867 | None:intergenic |
| AGATTGAAGGTAAAGCGGGC+TGG | 0.467976 | 5.4:-12102966 | None:intergenic |
| TCCAGAAGCAATTAAGGTTG+TGG | 0.468811 | 5.4:-12105755 | None:intergenic |
| GATTGAAGGTAAAGCGGGCT+GGG | 0.472239 | 5.4:-12102965 | None:intergenic |
| CCAGAAGCAATTAAGGTTGT+GGG | 0.478234 | 5.4:-12105754 | None:intergenic |
| CGGTGGTTGTTGTTGTGCAA+CGG | 0.480438 | 5.4:-12102718 | None:intergenic |
| GAGACATAGGGGATTATCTT+GGG | 0.484053 | 5.4:-12102825 | None:intergenic |
| TTACTTTGCAAATTTCGGCC+TGG | 0.486938 | 5.4:-12105621 | None:intergenic |
| AAGCAGGAGGACTGTAAAGT+TGG | 0.489113 | 5.4:-12106086 | None:intergenic |
| AACTAAGGTTGATGCTATAG+AGG | 0.490167 | 5.4:+12105789 | MS.gene59352:CDS |
| CCATGGGTTCAGGTTGTTGG+TGG | 0.491351 | 5.4:-12106017 | None:intergenic |
| TAGATTCAATGGATATTGAT+GGG | 0.494603 | 5.4:+12105983 | MS.gene59352:CDS |
| TTACACCCCAGCTGTTCCTC+CGG | 0.495785 | 5.4:+12105720 | MS.gene59352:CDS |
| CAATCGTCTAAGACAATGCC+TGG | 0.497496 | 5.4:+12106180 | MS.gene59352:CDS |
| GTCACAAATGGTGCTGGTAT+CGG | 0.500308 | 5.4:+12106045 | MS.gene59352:CDS |
| ATGTGGCACAAAAGGAAATC+GGG | 0.502560 | 5.4:+12104937 | MS.gene59352:CDS |
| CTTGCGCCGCTGAACAGTAT+GGG | 0.505019 | 5.4:-12102694 | None:intergenic |
| TGAAGCCCGTGGGCTCGAAT+GGG | 0.505489 | 5.4:-12102913 | None:intergenic |
| TTCCGCAAGGTATCCCGAAA+AGG | 0.505591 | 5.4:-12102996 | None:intergenic |
| CAAGTTCAAGCTCTGTTATG+AGG | 0.516513 | 5.4:+12106109 | MS.gene59352:CDS |
| TCAGCTCAATAAATCTGCTC+AGG | 0.517419 | 5.4:+12105055 | MS.gene59352:CDS |
| GATTATCTTGGGCGCGCAGG+TGG | 0.519878 | 5.4:-12102814 | None:intergenic |
| GGTGGAAGATGTGGTGAGGA+TGG | 0.522042 | 5.4:-12102796 | None:intergenic |
| GGGGATTATCTTGGGCGCGC+AGG | 0.527359 | 5.4:-12102817 | None:intergenic |
| GATCTGGTGTGACGAGACAT+AGG | 0.527875 | 5.4:-12102838 | None:intergenic |
| GTGGAAGATGTGGTGAGGAT+GGG | 0.528792 | 5.4:-12102795 | None:intergenic |
| CCCGCTCCGGAGGAACAGCT+GGG | 0.534028 | 5.4:-12105726 | None:intergenic |
| AAAAGGAGAGGGAAGATTGA+AGG | 0.535379 | 5.4:-12102979 | None:intergenic |
| TCATAACCGCTTTCTCAACA+TGG | 0.537661 | 5.4:+12102933 | MS.gene59352:CDS |
| ACAAATGCTTCTGCACTCGC+AGG | 0.542085 | 5.4:+12105533 | MS.gene59352:CDS |
| TAAACCAAACAAACCTAATG+AGG | 0.542847 | 5.4:+12105849 | MS.gene59352:CDS |
| CCATACTGTTCAGCGGCGCA+AGG | 0.542989 | 5.4:+12102695 | MS.gene59352:CDS |
| GTGGGAAATGCCCGCTCCGG+AGG | 0.547290 | 5.4:-12105736 | None:intergenic |
| TTTCAGTATTCTGGAAAACC+AGG | 0.547759 | 5.4:-12106198 | None:intergenic |
| GTTGTGGGAAATGCCCGCTC+CGG | 0.551336 | 5.4:-12105739 | None:intergenic |
| TGCTCGTGCAAGCCAATCAT+CGG | 0.551744 | 5.4:+12105888 | MS.gene59352:CDS |
| CCCATGGTAGAGGTCACAAA+TGG | 0.556010 | 5.4:+12106033 | MS.gene59352:CDS |
| ATCTGGTGTGACGAGACATA+GGG | 0.559207 | 5.4:-12102837 | None:intergenic |
| AGAAGACCCATTCGAGCCCA+CGG | 0.559374 | 5.4:+12102907 | MS.gene59352:CDS |
| TGCAAGTGTCGAATATTTGG+AGG | 0.560033 | 5.4:-12106159 | None:intergenic |
| ACCATTTGTGACCTCTACCA+TGG | 0.561783 | 5.4:-12106034 | None:intergenic |
| GTAGAGGTCACAAATGGTGC+TGG | 0.562911 | 5.4:+12106039 | MS.gene59352:CDS |
| ACAGAGCTTGAACTTGAAGC+AGG | 0.565561 | 5.4:-12106102 | None:intergenic |
| GGGAAGATTGAAGGTAAAGC+GGG | 0.566199 | 5.4:-12102970 | None:intergenic |
| CCCCAGCTGTTCCTCCGGAG+CGG | 0.571837 | 5.4:+12105725 | MS.gene59352:CDS |
| ATATTTGGAGGAGCAGATGA+AGG | 0.572074 | 5.4:-12106147 | None:intergenic |
| AGATTTATTGAGCTGAAGAA+GGG | 0.572226 | 5.4:-12105048 | None:intergenic |
| CAGGAACTGGCTACTCACAT+AGG | 0.573292 | 5.4:+12105496 | MS.gene59352:intron |
| AGGAGGACTGTAAAGTTGGT+TGG | 0.579622 | 5.4:-12106082 | None:intergenic |
| ACAACCTGAACCCATGGTAG+AGG | 0.579624 | 5.4:+12106023 | MS.gene59352:CDS |
| GGGAAATACATCAAGATACT+GGG | 0.584566 | 5.4:+12104957 | MS.gene59352:CDS |
| CGTTGCACAACAACAACCAC+CGG | 0.589945 | 5.4:+12102719 | MS.gene59352:CDS |
| CCACCAACAACCTGAACCCA+TGG | 0.593498 | 5.4:+12106017 | MS.gene59352:CDS |
| CCATTTGTGACCTCTACCAT+GGG | 0.594086 | 5.4:-12106033 | None:intergenic |
| GGGCGCGCAGGTGGAAGATG+TGG | 0.601302 | 5.4:-12102805 | None:intergenic |
| GAAGACCCATTCGAGCCCAC+GGG | 0.610171 | 5.4:+12102908 | MS.gene59352:CDS |
| ACAGCTGGGGTGTAATTAGA+GGG | 0.610212 | 5.4:-12105712 | None:intergenic |
| CAAGGTATCCCGAAAAGGAG+AGG | 0.615007 | 5.4:-12102991 | None:intergenic |
| AAGGTATCCCGAAAAGGAGA+GGG | 0.619065 | 5.4:-12102990 | None:intergenic |
| ATCACAGAATGCACATCATG+CGG | 0.620104 | 5.4:+12102749 | MS.gene59352:CDS |
| AGGTTAGAATATAACCTGAA+GGG | 0.624033 | 5.4:-12103263 | None:intergenic |
| AGAAGACAAACGCAAAACCC+AGG | 0.626006 | 5.4:+12105603 | MS.gene59352:CDS |
| TAAGGACCATGTTGAGAAAG+CGG | 0.635021 | 5.4:-12102939 | None:intergenic |
| AGGGAAGATTGAAGGTAAAG+CGG | 0.636882 | 5.4:-12102971 | None:intergenic |
| GAGCTTGAACTTGAAGCAGG+AGG | 0.641001 | 5.4:-12106099 | None:intergenic |
| CGCAGGTGGAAGATGTGGTG+AGG | 0.641116 | 5.4:-12102800 | None:intergenic |
| AATTTCAATTGCCGCCAATG+TGG | 0.648364 | 5.4:+12104920 | MS.gene59352:CDS |
| TTTGGAGGAGCAGATGAAGG+AGG | 0.658376 | 5.4:-12106144 | None:intergenic |
| CCGCTCCGGAGGAACAGCTG+GGG | 0.661546 | 5.4:-12105725 | None:intergenic |
| AAAGCGGTTATGAAGCCCGT+GGG | 0.662090 | 5.4:-12102923 | None:intergenic |
| AACAAACCTAATGAGGCCGA+AGG | 0.665876 | 5.4:+12105856 | MS.gene59352:CDS |
| GAGTACGTTCAAGTTCCGCA+AGG | 0.674170 | 5.4:-12103009 | None:intergenic |
| TCTGGTGTGACGAGACATAG+GGG | 0.679597 | 5.4:-12102836 | None:intergenic |
| GAAAGCGGTTATGAAGCCCG+TGG | 0.684756 | 5.4:-12102924 | None:intergenic |
| GAAGTGCCCATACTGTTCAG+CGG | 0.702862 | 5.4:+12102688 | MS.gene59352:CDS |
| TTGGCAAGCCAAATATATGG+CGG | 0.712362 | 5.4:-12105578 | None:intergenic |
| ATTGTCTTTCTTCTACGACG+CGG | 0.797371 | 5.4:-12102772 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTGTATTTGTAATATAA+AGG | - | chr5.4:12105449-12105468 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTTTTGACAAAG+AGG | + | chr5.4:12103763-12103782 | MS.gene59352:intron | 15.0% |
| !! | ATAAATAATAGAGGAAATGA+AGG | - | chr5.4:12104642-12104661 | None:intergenic | 20.0% |
| !! | ATCTATTACTAATTGTATCA+TGG | - | chr5.4:12105191-12105210 | None:intergenic | 20.0% |
| !! | ATGCTGAATATAAATAATAG+AGG | - | chr5.4:12104651-12104670 | None:intergenic | 20.0% |
| !! | GTAATTCTTTATACACTTTA+CGG | - | chr5.4:12105669-12105688 | None:intergenic | 20.0% |
| !! | TAAAGTGTATAAAGAATTAC+TGG | + | chr5.4:12105669-12105688 | MS.gene59352:CDS | 20.0% |
| !! | TAATAGTCTAATATTGCAAA+TGG | + | chr5.4:12103975-12103994 | MS.gene59352:intron | 20.0% |
| !!! | AAAATAAGCTTTTTAGTAAC+TGG | - | chr5.4:12104199-12104218 | None:intergenic | 20.0% |
| !!! | AAATAAGCTTTTTAGTAACT+GGG | - | chr5.4:12104198-12104217 | None:intergenic | 20.0% |
| !!! | ATTTGCTATTGATAATACTT+TGG | + | chr5.4:12104784-12104803 | MS.gene59352:intron | 20.0% |
| !!! | CTTATTTTTGTCTATGAAAA+TGG | + | chr5.4:12104211-12104230 | MS.gene59352:intron | 20.0% |
| !!! | GTTAATATTGGACAATTTTT+CGG | + | chr5.4:12104123-12104142 | MS.gene59352:intron | 20.0% |
| !!! | TATTTCATATAGCAGATTTT+TGG | + | chr5.4:12104742-12104761 | MS.gene59352:intron | 20.0% |
| !!! | TTCTCTATGATTTTTCTATT+GGG | + | chr5.4:12105224-12105243 | MS.gene59352:intron | 20.0% |
| !!! | TTTTTTGTTAAAAGCTGAAT+TGG | + | chr5.4:12103679-12103698 | MS.gene59352:intron | 20.0% |
| ! | AAAATACCATTACCATATCA+TGG | + | chr5.4:12103944-12103963 | MS.gene59352:intron | 25.0% |
| ! | AATTGAAAGGAGGAAAAAAA+AGG | - | chr5.4:12103286-12103305 | None:intergenic | 25.0% |
| ! | ACTGAAATTCAAAATCCTTA+AGG | - | chr5.4:12104510-12104529 | None:intergenic | 25.0% |
| ! | ATAAAGAATTACTGGAGAAT+TGG | + | chr5.4:12105677-12105696 | MS.gene59352:CDS | 25.0% |
| ! | ATTTGATATGATGTAAGCAT+TGG | + | chr5.4:12103791-12103810 | MS.gene59352:intron | 25.0% |
| ! | CAATCACATTTATCATCTTT+AGG | - | chr5.4:12103491-12103510 | None:intergenic | 25.0% |
| ! | CGATAAATAGGTAAATAGAA+AGG | - | chr5.4:12104413-12104432 | None:intergenic | 25.0% |
| ! | GATACCTATAATAAGTATCA+GGG | + | chr5.4:12103701-12103720 | MS.gene59352:intron | 25.0% |
| ! | GCATAGGTTATATAAATCAT+TGG | - | chr5.4:12104615-12104634 | None:intergenic | 25.0% |
| ! | GTATTATCAATAGCAAATTG+TGG | - | chr5.4:12104782-12104801 | None:intergenic | 25.0% |
| ! | GTTTAAAGATAAGTTCAATG+TGG | - | chr5.4:12103641-12103660 | None:intergenic | 25.0% |
| ! | TAAAGAATTACTGGAGAATT+GGG | + | chr5.4:12105678-12105697 | MS.gene59352:CDS | 25.0% |
| ! | TAGATTCAATGGATATTGAT+GGG | + | chr5.4:12105983-12106002 | MS.gene59352:CDS | 25.0% |
| ! | TGAACTTATCTTTAAACATC+AGG | + | chr5.4:12103644-12103663 | MS.gene59352:intron | 25.0% |
| ! | TTAGATTCAATGGATATTGA+TGG | + | chr5.4:12105982-12106001 | MS.gene59352:CDS | 25.0% |
| ! | TTCGTTTGAAAATCTTGAAA+CGG | + | chr5.4:12105122-12105141 | MS.gene59352:intron | 25.0% |
| ! | TTGAATGAATGCTCATAATT+CGG | - | chr5.4:12104246-12104265 | None:intergenic | 25.0% |
| ! | TTTCACAAGAGTTACAAATA+CGG | - | chr5.4:12104892-12104911 | None:intergenic | 25.0% |
| !! | CAAGATTTTCAAACGAAATA+AGG | - | chr5.4:12105119-12105138 | None:intergenic | 25.0% |
| !! | CCCTAAAATAACTTTTCTTA+GGG | + | chr5.4:12105404-12105423 | MS.gene59352:intron | 25.0% |
| !! | CTTCTCTATGATTTTTCTAT+TGG | + | chr5.4:12105223-12105242 | MS.gene59352:intron | 25.0% |
| !! | GATATAGAATTGCTGTTAAT+AGG | - | chr5.4:12105005-12105024 | None:intergenic | 25.0% |
| !! | TCAATATCGAGATTTTACTT+GGG | - | chr5.4:12104866-12104885 | None:intergenic | 25.0% |
| !! | TCCATTGAATCTAAAACATT+CGG | - | chr5.4:12105976-12105995 | None:intergenic | 25.0% |
| !! | TCCCTAAAATAACTTTTCTT+AGG | + | chr5.4:12105403-12105422 | MS.gene59352:intron | 25.0% |
| !! | TCTCTATGATTTTTCTATTG+GGG | + | chr5.4:12105225-12105244 | MS.gene59352:intron | 25.0% |
| !!! | ACCCTAAGAAAAGTTATTTT+AGG | - | chr5.4:12105408-12105427 | None:intergenic | 25.0% |
| !!! | ATTCGGATTTTGATGATTTT+GGG | - | chr5.4:12105959-12105978 | None:intergenic | 25.0% |
| !!! | CAGATTCTGTTTTTACTTTA+TGG | - | chr5.4:12105159-12105178 | None:intergenic | 25.0% |
| !!! | CCCTAAGAAAAGTTATTTTA+GGG | - | chr5.4:12105407-12105426 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTTGATAATCTTA+GGG | + | chr5.4:12103063-12103082 | MS.gene59352:CDS | 25.0% |
| !!! | TTCTTTTTTATGCACATGTA+TGG | + | chr5.4:12104565-12104584 | MS.gene59352:intron | 25.0% |
| !!! | TTTTTTTTCCTCCTTTCAAT+TGG | + | chr5.4:12103285-12103304 | MS.gene59352:intron | 25.0% |
| AAAACTAAGCAGCGATAAAT+AGG | - | chr5.4:12104425-12104444 | None:intergenic | 30.0% | |
| AAGGTTAGAATATAACCTGA+AGG | - | chr5.4:12103267-12103286 | None:intergenic | 30.0% | |
| AAGTTTAACCAATTGAAAGG+AGG | - | chr5.4:12103296-12103315 | None:intergenic | 30.0% | |
| AGATTTATTGAGCTGAAGAA+GGG | - | chr5.4:12105051-12105070 | None:intergenic | 30.0% | |
| AGGTTAGAATATAACCTGAA+GGG | - | chr5.4:12103266-12103285 | None:intergenic | 30.0% | |
| ATTAGAAACGATCCATGATA+TGG | - | chr5.4:12103959-12103978 | None:intergenic | 30.0% | |
| CAAATACAAAAGTCTGAGAA+TGG | + | chr5.4:12105457-12105476 | MS.gene59352:intron | 30.0% | |
| CACATACTAGCTAATATGTT+CGG | - | chr5.4:12103415-12103434 | None:intergenic | 30.0% | |
| CCTAAGTTTAACCAATTGAA+AGG | - | chr5.4:12103299-12103318 | None:intergenic | 30.0% | |
| CCTTTCAATTGGTTAAACTT+AGG | + | chr5.4:12103296-12103315 | MS.gene59352:intron | 30.0% | |
| CTATATGAAATAGCAGATAG+TGG | - | chr5.4:12104734-12104753 | None:intergenic | 30.0% | |
| GGATACCTATAATAAGTATC+AGG | + | chr5.4:12103700-12103719 | MS.gene59352:intron | 30.0% | |
| TAAACCAAACAAACCTAATG+AGG | + | chr5.4:12105849-12105868 | MS.gene59352:CDS | 30.0% | |
| TATAGAGGTTACTTCTTCTT+TGG | + | chr5.4:12105804-12105823 | MS.gene59352:CDS | 30.0% | |
| TATCTTTAAACATCAGGACT+GGG | + | chr5.4:12103650-12103669 | MS.gene59352:intron | 30.0% | |
| TGGATCTTACAATTCATGTT+AGG | + | chr5.4:12104804-12104823 | MS.gene59352:intron | 30.0% | |
| TTATCTTTAAACATCAGGAC+TGG | + | chr5.4:12103649-12103668 | MS.gene59352:intron | 30.0% | |
| TTTGGATTCAGAAAATTTGC+CGG | + | chr5.4:12105822-12105841 | MS.gene59352:CDS | 30.0% | |
| ! | ACCAGTTACTTTGCAAATTT+CGG | - | chr5.4:12105629-12105648 | None:intergenic | 30.0% |
| ! | AGTCTTGTAAGTGATTTAGT+TGG | + | chr5.4:12104076-12104095 | MS.gene59352:intron | 30.0% |
| ! | ATCATGCTTTTCAGTTGTTT+AGG | + | chr5.4:12103143-12103162 | MS.gene59352:CDS | 30.0% |
| ! | ATTTTACTTGGGATCACAAA+GGG | - | chr5.4:12104855-12104874 | None:intergenic | 30.0% |
| ! | CTTAATTTTACAAGCTAGAC+AGG | - | chr5.4:12103392-12103411 | None:intergenic | 30.0% |
| ! | GAGAAAAGCCTGTAAATTTT+GGG | - | chr5.4:12104832-12104851 | None:intergenic | 30.0% |
| ! | GGTTTGTTTGGTTTAAATTC+CGG | - | chr5.4:12105844-12105863 | None:intergenic | 30.0% |
| ! | GTCAATATCGAGATTTTACT+TGG | - | chr5.4:12104867-12104886 | None:intergenic | 30.0% |
| ! | TCATGCTTTTCAGTTGTTTA+GGG | + | chr5.4:12103144-12103163 | MS.gene59352:CDS | 30.0% |
| ! | TTAGGTTGTTTACATATTCG+TGG | - | chr5.4:12103473-12103492 | None:intergenic | 30.0% |
| ! | TTGTTCTTTTCTCAACCAAA+GGG | + | chr5.4:12105300-12105319 | MS.gene59352:intron | 30.0% |
| ! | TTTGTTCTTTTCTCAACCAA+AGG | + | chr5.4:12105299-12105318 | MS.gene59352:intron | 30.0% |
| !! | CATTCGGATTTTGATGATTT+TGG | - | chr5.4:12105960-12105979 | None:intergenic | 30.0% |
| !! | GTCTTATTTCAATTGCTATG+CGG | + | chr5.4:12104689-12104708 | MS.gene59352:intron | 30.0% |
| !! | GTGTTGTTGTTGATAATCTT+AGG | + | chr5.4:12103062-12103081 | MS.gene59352:CDS | 30.0% |
| !! | TAACTCTAGAAGTCACATTT+TGG | - | chr5.4:12105095-12105114 | None:intergenic | 30.0% |
| !! | TCCGAATGTTTTAGATTCAA+TGG | + | chr5.4:12105972-12105991 | MS.gene59352:CDS | 30.0% |
| AACGATCCATGATATGGTAA+TGG | - | chr5.4:12103953-12103972 | None:intergenic | 35.0% | |
| AATATAACCTGAAGGGTTCT+AGG | - | chr5.4:12103259-12103278 | None:intergenic | 35.0% | |
| AATGTGAACTCATTCTTCTG+TGG | + | chr5.4:12103828-12103847 | MS.gene59352:intron | 35.0% | |
| AATGTGGCACAAAAGGAAAT+CGG | + | chr5.4:12104936-12104955 | MS.gene59352:CDS | 35.0% | |
| ACACTACTCTTTGAATCCTT+TGG | - | chr5.4:12103600-12103619 | None:intergenic | 35.0% | |
| ACAGCAAGGAGAAATATGTT+TGG | - | chr5.4:12104269-12104288 | None:intergenic | 35.0% | |
| ACTTCATAAATCCCTAGAAG+TGG | - | chr5.4:12103855-12103874 | None:intergenic | 35.0% | |
| ATAATAGAGGAAATGAAGGC+AGG | - | chr5.4:12104638-12104657 | None:intergenic | 35.0% | |
| ATAGATGTTTCGTCGATACT+TGG | + | chr5.4:12103100-12103119 | MS.gene59352:CDS | 35.0% | |
| ATGAGTTGTGTATGACCTTA+AGG | + | chr5.4:12104492-12104511 | MS.gene59352:intron | 35.0% | |
| CAGATTTATTGAGCTGAAGA+AGG | - | chr5.4:12105052-12105071 | None:intergenic | 35.0% | |
| GAGTAGTGTGTTTAGATCTT+AGG | + | chr5.4:12103611-12103630 | MS.gene59352:intron | 35.0% | |
| GCACGTAGAATCGTTAATAT+TGG | + | chr5.4:12104111-12104130 | MS.gene59352:intron | 35.0% | |
| GCTTCCCTGATACTTATTAT+AGG | - | chr5.4:12103708-12103727 | None:intergenic | 35.0% | |
| GGGAAATACATCAAGATACT+GGG | + | chr5.4:12104957-12104976 | MS.gene59352:CDS | 35.0% | |
| GTTAGGATCCCAAAATTTAC+AGG | + | chr5.4:12104821-12104840 | MS.gene59352:intron | 35.0% | |
| TAATAGAGGAAATGAAGGCA+GGG | - | chr5.4:12104637-12104656 | None:intergenic | 35.0% | |
| TAGTTGGCAAGCCAAATATA+TGG | - | chr5.4:12105584-12105603 | None:intergenic | 35.0% | |
| TCACTTACAAGACTGAGATA+TGG | - | chr5.4:12104070-12104089 | None:intergenic | 35.0% | |
| TGTAACTCTTGTGAAATGAC+AGG | + | chr5.4:12104896-12104915 | MS.gene59352:intron | 35.0% | |
| ! | CTGCTACTTGTTTGAGAAAT+CGG | + | chr5.4:12103176-12103195 | MS.gene59352:CDS | 35.0% |
| ! | GATTTTACTTGGGATCACAA+AGG | - | chr5.4:12104856-12104875 | None:intergenic | 35.0% |
| ! | GCTAGTATGTGATTTTCGTT+AGG | + | chr5.4:12103424-12103443 | MS.gene59352:intron | 35.0% |
| ! | GGAGAAAAGCCTGTAAATTT+TGG | - | chr5.4:12104833-12104852 | None:intergenic | 35.0% |
| ! | TTTTACTTGGGATCACAAAG+GGG | - | chr5.4:12104854-12104873 | None:intergenic | 35.0% |
| ! | TTTTGCGTTTGTCTTCTAGT+TGG | - | chr5.4:12105600-12105619 | None:intergenic | 35.0% |
| !! | AACTAAGGTTGATGCTATAG+AGG | + | chr5.4:12105789-12105808 | MS.gene59352:CDS | 35.0% |
| !! | ACAATTTTTCGGCAATCCTA+GGG | + | chr5.4:12104134-12104153 | MS.gene59352:intron | 35.0% |
| !! | ACGAGCATTACTTTTACCTT+CGG | - | chr5.4:12105875-12105894 | None:intergenic | 35.0% |
| !! | ATATCTGCTCTGCTTTTACA+AGG | + | chr5.4:12105254-12105273 | MS.gene59352:intron | 35.0% |
| !! | GATTGCAAGTGTCGAATATT+TGG | - | chr5.4:12106165-12106184 | None:intergenic | 35.0% |
| !! | GCATTCTGTGATTGATTTTC+CGG | - | chr5.4:12102741-12102760 | None:intergenic | 35.0% |
| !!! | TGCTGAAGTGTTTTTTGTGA+TGG | + | chr5.4:12104531-12104550 | MS.gene59352:intron | 35.0% |
| AAAAGGAGAGGGAAGATTGA+AGG | - | chr5.4:12102982-12103001 | None:intergenic | 40.0% | |
| AAGAGAGAGATGCATGAGAA+GGG | - | chr5.4:12104294-12104313 | None:intergenic | 40.0% | |
| AATAAATCTGCTCAGGTACC+TGG | + | chr5.4:12105062-12105081 | MS.gene59352:intron | 40.0% | |
| AATGGACAATCAGTTAGACC+TGG | + | chr5.4:12105329-12105348 | MS.gene59352:intron | 40.0% | |
| AATTTCAATTGCCGCCAATG+TGG | + | chr5.4:12104920-12104939 | MS.gene59352:CDS | 40.0% | |
| ACCAAGTAGGAGAAGAGAAA+AGG | - | chr5.4:12104367-12104386 | None:intergenic | 40.0% | |
| ACTTGTAACTCTCAAGCCAA+AGG | + | chr5.4:12103581-12103600 | MS.gene59352:intron | 40.0% | |
| AGAACGTCCAGAAGCAATTA+AGG | - | chr5.4:12105764-12105783 | None:intergenic | 40.0% | |
| AGGGAAGATTGAAGGTAAAG+CGG | - | chr5.4:12102974-12102993 | None:intergenic | 40.0% | |
| ATATTTGGAGGAGCAGATGA+AGG | - | chr5.4:12106150-12106169 | None:intergenic | 40.0% | |
| ATCACAGAATGCACATCATG+CGG | + | chr5.4:12102749-12102768 | MS.gene59352:CDS | 40.0% | |
| ATGTGGCACAAAAGGAAATC+GGG | + | chr5.4:12104937-12104956 | MS.gene59352:CDS | 40.0% | |
| ATTGTCTTTCTTCTACGACG+CGG | - | chr5.4:12102775-12102794 | None:intergenic | 40.0% | |
| CAAGTTCAAGCTCTGTTATG+AGG | + | chr5.4:12106109-12106128 | MS.gene59352:CDS | 40.0% | |
| CACTACCACAAAGTGATCAT+TGG | - | chr5.4:12105367-12105386 | None:intergenic | 40.0% | |
| CAGTTCCTGAAATGCAATGT+AGG | - | chr5.4:12105485-12105504 | None:intergenic | 40.0% | |
| CCAAGTAGGAGAAGAGAAAA+GGG | - | chr5.4:12104366-12104385 | None:intergenic | 40.0% | |
| CCAGAAGCAATTAAGGTTGT+GGG | - | chr5.4:12105757-12105776 | None:intergenic | 40.0% | |
| CGGGAAATACATCAAGATAC+TGG | + | chr5.4:12104956-12104975 | MS.gene59352:CDS | 40.0% | |
| CGTATCTAATGCCGATACTT+TGG | - | chr5.4:12103733-12103752 | None:intergenic | 40.0% | |
| CTACATTGCATTTCAGGAAC+TGG | + | chr5.4:12105483-12105502 | MS.gene59352:intron | 40.0% | |
| GAATGCTCATAATTCGGCAA+GGG | - | chr5.4:12104240-12104259 | None:intergenic | 40.0% | |
| GAGACATAGGGGATTATCTT+GGG | - | chr5.4:12102828-12102847 | None:intergenic | 40.0% | |
| GATGTCCAATGATCACTTTG+TGG | + | chr5.4:12105359-12105378 | MS.gene59352:intron | 40.0% | |
| GCCGAAATTTGCAAAGTAAC+TGG | + | chr5.4:12105625-12105644 | MS.gene59352:CDS | 40.0% | |
| GTAAAAGCAGAGCAGATATG+CGG | - | chr5.4:12105253-12105272 | None:intergenic | 40.0% | |
| TAAGGACCATGTTGAGAAAG+CGG | - | chr5.4:12102942-12102961 | None:intergenic | 40.0% | |
| TACTTTGCAAATTTCGGCCT+GGG | - | chr5.4:12105623-12105642 | None:intergenic | 40.0% | |
| TCAACCAAAGGGTTGTGTAA+TGG | + | chr5.4:12105311-12105330 | MS.gene59352:intron | 40.0% | |
| TCAGCTCAATAAATCTGCTC+AGG | + | chr5.4:12105055-12105074 | MS.gene59352:CDS | 40.0% | |
| TCATAACCGCTTTCTCAACA+TGG | + | chr5.4:12102933-12102952 | MS.gene59352:CDS | 40.0% | |
| TCCAGAAGCAATTAAGGTTG+TGG | - | chr5.4:12105758-12105777 | None:intergenic | 40.0% | |
| TGAATGCTCATAATTCGGCA+AGG | - | chr5.4:12104241-12104260 | None:intergenic | 40.0% | |
| TGGACGTTCTTCAACAACTA+AGG | + | chr5.4:12105774-12105793 | MS.gene59352:CDS | 40.0% | |
| TGTTTCGTCGATACTTGGAT+TGG | + | chr5.4:12103105-12103124 | MS.gene59352:CDS | 40.0% | |
| TTACTTTGCAAATTTCGGCC+TGG | - | chr5.4:12105624-12105643 | None:intergenic | 40.0% | |
| TTGGCAAGCCAAATATATGG+CGG | - | chr5.4:12105581-12105600 | None:intergenic | 40.0% | |
| TTGTCCATTACACAACCCTT+TGG | - | chr5.4:12105318-12105337 | None:intergenic | 40.0% | |
| ! | ACTGAGATATGGATTGCAAG+GGG | - | chr5.4:12104059-12104078 | None:intergenic | 40.0% |
| ! | AGACTGAGATATGGATTGCA+AGG | - | chr5.4:12104061-12104080 | None:intergenic | 40.0% |
| ! | AGGGAGAGTGTGTAAGATAA+AGG | - | chr5.4:12104347-12104366 | None:intergenic | 40.0% |
| ! | CTATTCAGCAGTCAACGTTT+TGG | + | chr5.4:12105911-12105930 | MS.gene59352:CDS | 40.0% |
| ! | GACTGAGATATGGATTGCAA+GGG | - | chr5.4:12104060-12104079 | None:intergenic | 40.0% |
| ! | GATTTCCTTTTGTGCCACAT+TGG | - | chr5.4:12104937-12104956 | None:intergenic | 40.0% |
| ! | TCAATCTTCCCTCTCCTTTT+CGG | + | chr5.4:12102982-12103001 | MS.gene59352:CDS | 40.0% |
| ! | TGAAATAGCAGATAGTGGTG+CGG | - | chr5.4:12104729-12104748 | None:intergenic | 40.0% |
| ! | TGAAGAAGGGTGCAAAATCT+TGG | - | chr5.4:12105038-12105057 | None:intergenic | 40.0% |
| !! | AAGTATCGGCATTAGATACG+AGG | + | chr5.4:12103733-12103752 | MS.gene59352:intron | 40.0% |
| !! | GACAATTTTTCGGCAATCCT+AGG | + | chr5.4:12104133-12104152 | MS.gene59352:intron | 40.0% |
| !! | GTCTTCTTCTTCGTTGGTTT+CGG | - | chr5.4:12102894-12102913 | None:intergenic | 40.0% |
| !! | TCACATTTTGGTGCAATTCC+AGG | - | chr5.4:12105083-12105102 | None:intergenic | 40.0% |
| !! | TGCAAGTGTCGAATATTTGG+AGG | - | chr5.4:12106162-12106181 | None:intergenic | 40.0% |
| !! | TTCTGTGATTGATTTTCCGG+TGG | - | chr5.4:12102738-12102757 | None:intergenic | 40.0% |
| AAAGGAAATGCGTGCAACAG+AGG | - | chr5.4:12104329-12104348 | None:intergenic | 45.0% | |
| AACAAACCTAATGAGGCCGA+AGG | + | chr5.4:12105856-12105875 | MS.gene59352:CDS | 45.0% | |
| AACAGCTGGGGTGTAATTAG+AGG | - | chr5.4:12105716-12105735 | None:intergenic | 45.0% | |
| AAGCAGGAGGACTGTAAAGT+TGG | - | chr5.4:12106089-12106108 | None:intergenic | 45.0% | |
| ACAGAGCTTGAACTTGAAGC+AGG | - | chr5.4:12106105-12106124 | None:intergenic | 45.0% | |
| ACAGCTGGGGTGTAATTAGA+GGG | - | chr5.4:12105715-12105734 | None:intergenic | 45.0% | |
| ACCACTCGGTTTCTTGGATT+AGG | + | chr5.4:12104164-12104183 | MS.gene59352:intron | 45.0% | |
| ACCATTTGTGACCTCTACCA+TGG | - | chr5.4:12106037-12106056 | None:intergenic | 45.0% | |
| ACCTAATCCAAGAAACCGAG+TGG | - | chr5.4:12104168-12104187 | None:intergenic | 45.0% | |
| ACTGCTGAATAGCCGATGAT+TGG | - | chr5.4:12105903-12105922 | None:intergenic | 45.0% | |
| AGAAGACAAACGCAAAACCC+AGG | + | chr5.4:12105603-12105622 | MS.gene59352:CDS | 45.0% | |
| ATCTGGTGTGACGAGACATA+GGG | - | chr5.4:12102840-12102859 | None:intergenic | 45.0% | |
| ATGCTGCTCGTCTACATAGT+TGG | - | chr5.4:12103888-12103907 | None:intergenic | 45.0% | |
| CAAGAGAGAGATGCATGAGA+AGG | - | chr5.4:12104295-12104314 | None:intergenic | 45.0% | |
| CCATTTGTGACCTCTACCAT+GGG | - | chr5.4:12106036-12106055 | None:intergenic | 45.0% | |
| CCCACAACCTTAATTGCTTC+TGG | + | chr5.4:12105754-12105773 | MS.gene59352:CDS | 45.0% | |
| CGAGACATAGGGGATTATCT+TGG | - | chr5.4:12102829-12102848 | None:intergenic | 45.0% | |
| GAATGGGTCTTCTTCTTCGT+TGG | - | chr5.4:12102900-12102919 | None:intergenic | 45.0% | |
| GGGAAGATTGAAGGTAAAGC+GGG | - | chr5.4:12102973-12102992 | None:intergenic | 45.0% | |
| TCAAGAACCTAGAACCCTTC+AGG | + | chr5.4:12103249-12103268 | MS.gene59352:CDS | 45.0% | |
| TCTTCTGTGGTCCACTTCTA+GGG | + | chr5.4:12103841-12103860 | MS.gene59352:intron | 45.0% | |
| TGCTGCTCGTCTACATAGTT+GGG | - | chr5.4:12103887-12103906 | None:intergenic | 45.0% | |
| TGGCTCCTACATTGCATTTC+AGG | + | chr5.4:12105477-12105496 | MS.gene59352:intron | 45.0% | |
| TGTCAGAGAGAACACCAAGT+AGG | - | chr5.4:12104380-12104399 | None:intergenic | 45.0% | |
| TTCTTCTGTGGTCCACTTCT+AGG | + | chr5.4:12103840-12103859 | MS.gene59352:intron | 45.0% | |
| ! | AAGGTATCCCGAAAAGGAGA+GGG | - | chr5.4:12102993-12103012 | None:intergenic | 45.0% |
| ! | AGGAGGACTGTAAAGTTGGT+TGG | - | chr5.4:12106085-12106104 | None:intergenic | 45.0% |
| ! | CAATCGTCTAAGACAATGCC+TGG | + | chr5.4:12106180-12106199 | MS.gene59352:CDS | 45.0% |
| ! | CAATCTTCCCTCTCCTTTTC+GGG | + | chr5.4:12102983-12103002 | MS.gene59352:CDS | 45.0% |
| ! | CCCTTTTCTCTTCTCCTACT+TGG | + | chr5.4:12104363-12104382 | MS.gene59352:intron | 45.0% |
| ! | CTCTGTTATGAGGTCGCTTT+CGG | + | chr5.4:12106119-12106138 | MS.gene59352:CDS | 45.0% |
| ! | CTTTTACCTTCGGCCTCATT+AGG | - | chr5.4:12105865-12105884 | None:intergenic | 45.0% |
| ! | GAAATAGCAGATAGTGGTGC+GGG | - | chr5.4:12104728-12104747 | None:intergenic | 45.0% |
| ! | TCGGCCTCATTAGGTTTGTT+TGG | - | chr5.4:12105856-12105875 | None:intergenic | 45.0% |
| ! | TTCCTTTTGTGCCACATTGG+CGG | - | chr5.4:12104934-12104953 | None:intergenic | 45.0% |
| !! | CAGGGAAGCATCCAAAGTAT+CGG | + | chr5.4:12103719-12103738 | MS.gene59352:intron | 45.0% |
| !! | GTCACAAATGGTGCTGGTAT+CGG | + | chr5.4:12106045-12106064 | MS.gene59352:CDS | 45.0% |
| !! | GTGTTGGTTTGGTTGAGAGT+GGG | - | chr5.4:12102872-12102891 | None:intergenic | 45.0% |
| !! | TGATGATTTTGGGTCGCACT+GGG | - | chr5.4:12105949-12105968 | None:intergenic | 45.0% |
| !! | TGTTGGTTTGGTTGAGAGTG+GGG | - | chr5.4:12102871-12102890 | None:intergenic | 45.0% |
| !! | TTCTTCGTTGGTTTCGGTGT+TGG | - | chr5.4:12102888-12102907 | None:intergenic | 45.0% |
| !! | TTGATGATTTTGGGTCGCAC+TGG | - | chr5.4:12105950-12105969 | None:intergenic | 45.0% |
| AAAGCGGTTATGAAGCCCGT+GGG | - | chr5.4:12102926-12102945 | None:intergenic | 50.0% | |
| ACAAATGCTTCTGCACTCGC+AGG | + | chr5.4:12105533-12105552 | MS.gene59352:CDS | 50.0% | |
| ACAACCTGAACCCATGGTAG+AGG | + | chr5.4:12106023-12106042 | MS.gene59352:CDS | 50.0% | |
| AGATTGAAGGTAAAGCGGGC+TGG | - | chr5.4:12102969-12102988 | None:intergenic | 50.0% | |
| AGGAAATGAAGGCAGGGCAT+AGG | - | chr5.4:12104631-12104650 | None:intergenic | 50.0% | |
| CAGGAACTGGCTACTCACAT+AGG | + | chr5.4:12105496-12105515 | MS.gene59352:intron | 50.0% | |
| CCCATGGTAGAGGTCACAAA+TGG | + | chr5.4:12106033-12106052 | MS.gene59352:CDS | 50.0% | |
| CGTTGCACAACAACAACCAC+CGG | + | chr5.4:12102719-12102738 | MS.gene59352:CDS | 50.0% | |
| CTCAGCTGCCGCCATATATT+TGG | + | chr5.4:12105570-12105589 | MS.gene59352:CDS | 50.0% | |
| GACAATCAGTTAGACCTGGC+TGG | + | chr5.4:12105333-12105352 | MS.gene59352:intron | 50.0% | |
| GAGCTTGAACTTGAAGCAGG+AGG | - | chr5.4:12106102-12106121 | None:intergenic | 50.0% | |
| GATCTGGTGTGACGAGACAT+AGG | - | chr5.4:12102841-12102860 | None:intergenic | 50.0% | |
| GCTGCTCGTCTACATAGTTG+GGG | - | chr5.4:12103886-12103905 | None:intergenic | 50.0% | |
| GTAGAGGTCACAAATGGTGC+TGG | + | chr5.4:12106039-12106058 | MS.gene59352:CDS | 50.0% | |
| GTGGAAGATGTGGTGAGGAT+GGG | - | chr5.4:12102798-12102817 | None:intergenic | 50.0% | |
| TCGATCACCACTCGGTTTCT+TGG | + | chr5.4:12104158-12104177 | MS.gene59352:intron | 50.0% | |
| TCTGGTGTGACGAGACATAG+GGG | - | chr5.4:12102839-12102858 | None:intergenic | 50.0% | |
| TGCTACTGCTGCTCTTGTTC+AGG | + | chr5.4:12103213-12103232 | MS.gene59352:CDS | 50.0% | |
| TGCTCGTGCAAGCCAATCAT+CGG | + | chr5.4:12105888-12105907 | MS.gene59352:CDS | 50.0% | |
| TTTGGAGGAGCAGATGAAGG+AGG | - | chr5.4:12106147-12106166 | None:intergenic | 50.0% | |
| ! | CAAGGTATCCCGAAAAGGAG+AGG | - | chr5.4:12102994-12103013 | None:intergenic | 50.0% |
| ! | CGGTGGTTGTTGTTGTGCAA+CGG | - | chr5.4:12102721-12102740 | None:intergenic | 50.0% |
| ! | GAAGTGCCCATACTGTTCAG+CGG | + | chr5.4:12102688-12102707 | MS.gene59352:CDS | 50.0% |
| ! | GAGTACGTTCAAGTTCCGCA+AGG | - | chr5.4:12103012-12103031 | None:intergenic | 50.0% |
| ! | GATTGAAGGTAAAGCGGGCT+GGG | - | chr5.4:12102968-12102987 | None:intergenic | 50.0% |
| ! | TTCCGCAAGGTATCCCGAAA+AGG | - | chr5.4:12102999-12103018 | None:intergenic | 50.0% |
| !! | CGTTGGTTTCGGTGTTGGTT+TGG | - | chr5.4:12102883-12102902 | None:intergenic | 50.0% |
| !! | CTACCATGGGTTCAGGTTGT+TGG | - | chr5.4:12106023-12106042 | None:intergenic | 50.0% |
| !! | CTCCTTTTCGGGATACCTTG+CGG | + | chr5.4:12102994-12103013 | MS.gene59352:CDS | 50.0% |
| !! | GGTGTTGGTTTGGTTGAGAG+TGG | - | chr5.4:12102873-12102892 | None:intergenic | 50.0% |
| !! | GTTGGTTTGGTTGAGAGTGG+GGG | - | chr5.4:12102870-12102889 | None:intergenic | 50.0% |
| !! | TTGGTTTGGTTGAGAGTGGG+GGG | - | chr5.4:12102869-12102888 | None:intergenic | 50.0% |
| AGAAGACCCATTCGAGCCCA+CGG | + | chr5.4:12102907-12102926 | MS.gene59352:CDS | 55.0% | |
| ATCAGTTAGACCTGGCTGGC+TGG | + | chr5.4:12105337-12105356 | MS.gene59352:intron | 55.0% | |
| CCACCAACAACCTGAACCCA+TGG | + | chr5.4:12106017-12106036 | MS.gene59352:CDS | 55.0% | |
| CTTGCGCCGCTGAACAGTAT+GGG | - | chr5.4:12102697-12102716 | None:intergenic | 55.0% | |
| GAAAGCGGTTATGAAGCCCG+TGG | - | chr5.4:12102927-12102946 | None:intergenic | 55.0% | |
| GCATGAGAAGGGAGACAGCA+AGG | - | chr5.4:12104283-12104302 | None:intergenic | 55.0% | |
| GCGGCAGCTGAGATGCTAAT+TGG | - | chr5.4:12105562-12105581 | None:intergenic | 55.0% | |
| GGAAATGCGTGCAACAGAGG+AGG | - | chr5.4:12104326-12104345 | None:intergenic | 55.0% | |
| GGTGGAAGATGTGGTGAGGA+TGG | - | chr5.4:12102799-12102818 | None:intergenic | 55.0% | |
| GTGACCTCTACCATGGGTTC+AGG | - | chr5.4:12106030-12106049 | None:intergenic | 55.0% | |
| TGCCGCCAATGTGGCACAAA+AGG | + | chr5.4:12104929-12104948 | MS.gene59352:CDS | 55.0% | |
| TTACACCCCAGCTGTTCCTC+CGG | + | chr5.4:12105720-12105739 | MS.gene59352:CDS | 55.0% | |
| TTGGGTCGCACTGGGAAGTT+GGG | - | chr5.4:12105941-12105960 | None:intergenic | 55.0% | |
| TTTGGGTCGCACTGGGAAGT+TGG | - | chr5.4:12105942-12105961 | None:intergenic | 55.0% | |
| TTTGGTTGAGAGTGGGGGGA+GGG | - | chr5.4:12102865-12102884 | None:intergenic | 55.0% | |
| !! | CCATGGGTTCAGGTTGTTGG+TGG | - | chr5.4:12106020-12106039 | None:intergenic | 55.0% |
| ATGAAGCCCGTGGGCTCGAA+TGG | - | chr5.4:12102917-12102936 | None:intergenic | 60.0% | |
| CATTGGACATCCAGCCAGCC+AGG | - | chr5.4:12105350-12105369 | None:intergenic | 60.0% | |
| CCATACTGTTCAGCGGCGCA+AGG | + | chr5.4:12102695-12102714 | MS.gene59352:CDS | 60.0% | |
| CCTAGGGCTCGATCACCACT+CGG | + | chr5.4:12104150-12104169 | MS.gene59352:intron | 60.0% | |
| CCTTGCGCCGCTGAACAGTA+TGG | - | chr5.4:12102698-12102717 | None:intergenic | 60.0% | |
| CGCAGGTGGAAGATGTGGTG+AGG | - | chr5.4:12102803-12102822 | None:intergenic | 60.0% | |
| GAAGACCCATTCGAGCCCAC+GGG | + | chr5.4:12102908-12102927 | MS.gene59352:CDS | 60.0% | |
| GATTATCTTGGGCGCGCAGG+TGG | - | chr5.4:12102817-12102836 | None:intergenic | 60.0% | |
| GTTGTGGGAAATGCCCGCTC+CGG | - | chr5.4:12105742-12105761 | None:intergenic | 60.0% | |
| GTTTGGTTGAGAGTGGGGGG+AGG | - | chr5.4:12102866-12102885 | None:intergenic | 60.0% | |
| TGAAGCCCGTGGGCTCGAAT+GGG | - | chr5.4:12102916-12102935 | None:intergenic | 60.0% | |
| !! | GTAAAGCGGGCTGGGCTCTA+AGG | - | chr5.4:12102960-12102979 | None:intergenic | 60.0% |
| AGAGTGGGGGGAGGGAGATC+TGG | - | chr5.4:12102857-12102876 | None:intergenic | 65.0% | |
| CCGAGTGGTGATCGAGCCCT+AGG | - | chr5.4:12104153-12104172 | None:intergenic | 65.0% | |
| GGGGATTATCTTGGGCGCGC+AGG | - | chr5.4:12102820-12102839 | None:intergenic | 65.0% | |
| CCCAGCTGTTCCTCCGGAGC+GGG | + | chr5.4:12105726-12105745 | MS.gene59352:CDS | 70.0% | |
| CCCCAGCTGTTCCTCCGGAG+CGG | + | chr5.4:12105725-12105744 | MS.gene59352:CDS | 70.0% | |
| CCCGCTCCGGAGGAACAGCT+GGG | - | chr5.4:12105729-12105748 | None:intergenic | 70.0% | |
| CCGCTCCGGAGGAACAGCTG+GGG | - | chr5.4:12105728-12105747 | None:intergenic | 70.0% | |
| GGGCGCGCAGGTGGAAGATG+TGG | - | chr5.4:12102808-12102827 | None:intergenic | 70.0% | |
| GTGGGAAATGCCCGCTCCGG+AGG | - | chr5.4:12105739-12105758 | None:intergenic | 70.0% | |
| GCCCGCTCCGGAGGAACAGC+TGG | - | chr5.4:12105730-12105749 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12102686 | 12106218 | 12102686 | ID=MS.gene59352 |
| chr5.4 | mRNA | 12102686 | 12106218 | 12102686 | ID=MS.gene59352.t1;Parent=MS.gene59352 |
| chr5.4 | exon | 12102686 | 12103270 | 12102686 | ID=MS.gene59352.t1.exon1;Parent=MS.gene59352.t1 |
| chr5.4 | CDS | 12102686 | 12103270 | 12102686 | ID=cds.MS.gene59352.t1;Parent=MS.gene59352.t1 |
| chr5.4 | exon | 12104918 | 12105076 | 12104918 | ID=MS.gene59352.t1.exon2;Parent=MS.gene59352.t1 |
| chr5.4 | CDS | 12104918 | 12105076 | 12104918 | ID=cds.MS.gene59352.t1;Parent=MS.gene59352.t1 |
| chr5.4 | exon | 12105499 | 12106218 | 12105499 | ID=MS.gene59352.t1.exon3;Parent=MS.gene59352.t1 |
| chr5.4 | CDS | 12105499 | 12106218 | 12105499 | ID=cds.MS.gene59352.t1;Parent=MS.gene59352.t1 |
| Gene Sequence |
| Protein sequence |
