Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59455.t1 | XP_003612141.1 | 99.5 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 1.10E-210 | 742.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59455.t1 | Q9SNY3 | 87.4 | 348 | 43 | 1 | 22 | 369 | 15 | 361 | 6.6e-180 | 631.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59455.t1 | G7JW51 | 99.5 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 8.0e-211 | 742.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058235 | MS.gene59455 | 0.836296 | 1.02E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20783 | MS.gene59455 | PPI |
| MS.gene59455 | MS.gene07262 | PPI |
| MS.gene59455 | MS.gene20834 | PPI |
| MS.gene96326 | MS.gene59455 | PPI |
| MS.gene012318 | MS.gene59455 | PPI |
| MS.gene59455 | MS.gene073336 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59455.t1 | MTR_5g021760 | 99.458 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 0.0 | 766 |
| MS.gene59455.t1 | MTR_5g021770 | 98.645 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 0.0 | 761 |
| MS.gene59455.t1 | MTR_4g120030 | 25.000 | 336 | 198 | 12 | 23 | 344 | 110 | 405 | 5.96e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59455.t1 | AT5G66280 | 85.754 | 358 | 49 | 2 | 13 | 369 | 5 | 361 | 0.0 | 649 |
| MS.gene59455.t1 | AT3G51160 | 86.207 | 348 | 47 | 1 | 22 | 369 | 27 | 373 | 0.0 | 647 |
| MS.gene59455.t1 | AT2G47650 | 24.490 | 343 | 202 | 13 | 23 | 346 | 118 | 422 | 1.26e-11 | 66.2 |
| MS.gene59455.t1 | AT2G47650 | 25.788 | 349 | 196 | 16 | 23 | 346 | 118 | 428 | 4.63e-11 | 64.3 |
| MS.gene59455.t1 | AT3G62830 | 23.964 | 338 | 202 | 12 | 26 | 346 | 121 | 420 | 4.89e-11 | 64.3 |
| MS.gene59455.t1 | AT3G62830 | 23.964 | 338 | 202 | 12 | 26 | 346 | 121 | 420 | 4.89e-11 | 64.3 |
Find 91 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAAGTTGATAATCTTAA+AGG | 0.192272 | 5.4:-13435641 | MS.gene59455:CDS |
| AGTTTGATGAACGGCGAATT+AGG | 0.266526 | 5.4:+13436845 | None:intergenic |
| CTTCAGAGTAAGTTGTTTCT+TGG | 0.283233 | 5.4:-13435869 | MS.gene59455:CDS |
| AGTAAAGCTAAGAAAGTTCT+TGG | 0.327387 | 5.4:-13435611 | MS.gene59455:CDS |
| CGTTTGTTGTAGACGGTGTT+GGG | 0.332541 | 5.4:+13436977 | None:intergenic |
| TCCGTCTTGGCCTGTGATTC+CGG | 0.355877 | 5.4:+13436915 | None:intergenic |
| ACCTAAGTGCGTCAAGAGAT+TGG | 0.381294 | 5.4:-13435844 | MS.gene59455:CDS |
| CCTAAGTGCGTCAAGAGATT+GGG | 0.391497 | 5.4:-13435843 | MS.gene59455:CDS |
| GCTGGATCTTCCGAAATGTT+TGG | 0.393610 | 5.4:-13436535 | MS.gene59455:CDS |
| TTGGTTATGTTGGATTGAAT+TGG | 0.394470 | 5.4:-13435703 | MS.gene59455:CDS |
| GTACCGAATGTGAGATCTTC+CGG | 0.395586 | 5.4:+13436564 | None:intergenic |
| TGGAGTTGATCCAAACATTT+CGG | 0.395979 | 5.4:+13436525 | None:intergenic |
| GCGAGATTGTAAACTTCATC+AGG | 0.399238 | 5.4:+13436697 | None:intergenic |
| ACTACATCGGCAGTGTAATC+AGG | 0.400097 | 5.4:+13436640 | None:intergenic |
| GTGAGCTTTGTGAGCGTTGT+GGG | 0.407805 | 5.4:+13436786 | None:intergenic |
| GTACCAATGCGCAGCGACTT+TGG | 0.414772 | 5.4:+13436450 | None:intergenic |
| ACGCTTCCTCCCTCCGTCGC+TGG | 0.423134 | 5.4:-13436735 | MS.gene59455:CDS |
| GTGAATTACCGTGAAGCATA+TGG | 0.425833 | 5.4:-13435998 | MS.gene59455:CDS |
| CCGTTTGTTGTAGACGGTGT+TGG | 0.435086 | 5.4:+13436976 | None:intergenic |
| AAACGACTCCGTTTCATCCT+CGG | 0.435536 | 5.4:-13436489 | MS.gene59455:CDS |
| AAGCTAAGAAAGTTCTTGGT+TGG | 0.448425 | 5.4:-13435607 | MS.gene59455:CDS |
| GTCGTTTCAGACTGCGGCGG+TGG | 0.449259 | 5.4:+13436505 | None:intergenic |
| TCAAGAGATTGGGGATTTGC+TGG | 0.457247 | 5.4:-13435833 | MS.gene59455:CDS |
| GCGACTTTGGAGGCGGCATA+AGG | 0.465807 | 5.4:+13436463 | None:intergenic |
| GGAGGAAGCGTCGGAGAGAT+CGG | 0.468506 | 5.4:+13436747 | None:intergenic |
| CCGTTAGGTATGATCCGTCT+TGG | 0.470101 | 5.4:+13436902 | None:intergenic |
| TGATGTTGAGATGGCTAAGA+AGG | 0.472951 | 5.4:-13435537 | MS.gene59455:CDS |
| CCTCCAAAGTCGCTGCGCAT+TGG | 0.478635 | 5.4:-13436453 | MS.gene59455:intron |
| GAGAAAGTGCTTGTTGATGC+TGG | 0.479756 | 5.4:-13435515 | MS.gene59455:CDS |
| CACATTCGGTACTATCAAGC+TGG | 0.485404 | 5.4:-13436553 | MS.gene59455:CDS |
| AGTTCTTGGTTGGAAACCTA+AGG | 0.486640 | 5.4:-13435597 | MS.gene59455:CDS |
| GAGGAGAGAATTTCGTTACA+AGG | 0.489476 | 5.4:-13435928 | MS.gene59455:CDS |
| GATGTGGTTGATGCTACAAC+AGG | 0.492498 | 5.4:-13435795 | MS.gene59455:CDS |
| TGTTGAGGAGGAATTCCGTT+AGG | 0.497000 | 5.4:+13436887 | None:intergenic |
| TGAAGAGCTTGTTAGAATGA+TGG | 0.497175 | 5.4:-13435567 | MS.gene59455:CDS |
| AGGAAGATTACTAGAGCTGT+TGG | 0.503091 | 5.4:-13435908 | MS.gene59455:CDS |
| CCCAATCTCTTGACGCACTT+AGG | 0.504911 | 5.4:+13435843 | None:intergenic |
| AGCTCTTCAAAACTAACCTT+AGG | 0.505928 | 5.4:+13435581 | None:intergenic |
| GCATTAATCACCGGAATCAC+AGG | 0.515624 | 5.4:-13436925 | MS.gene59455:CDS |
| AATGCGACTTTACGCGGTGG+AGG | 0.517057 | 5.4:+13436943 | None:intergenic |
| CCAACACCGTCTACAACAAA+CGG | 0.524963 | 5.4:-13436976 | MS.gene59455:CDS |
| ATGCGCAGCGACTTTGGAGG+CGG | 0.526416 | 5.4:+13436456 | None:intergenic |
| AACAAAGGCTACTCCGTTCA+CGG | 0.537231 | 5.4:-13436868 | MS.gene59455:CDS |
| TTAAGATTATCAACTTCAGT+AGG | 0.538937 | 5.4:+13435644 | None:intergenic |
| TAAGGAGACCGAGGATGAAA+CGG | 0.541837 | 5.4:+13436481 | None:intergenic |
| CGATCTCATATCGACGCTAC+CGG | 0.547579 | 5.4:-13436583 | MS.gene59455:CDS |
| CTGTTGGAAGAATCAAGATC+GGG | 0.549995 | 5.4:-13435892 | MS.gene59455:CDS |
| CGGAGTAGCCTTTGTTGAGG+AGG | 0.561578 | 5.4:+13436875 | None:intergenic |
| GTTGATGCTACAACAGGAAA+AGG | 0.563273 | 5.4:-13435789 | MS.gene59455:CDS |
| TTCAAGAAGACGGAGAGCAC+CGG | 0.564732 | 5.4:+13436612 | None:intergenic |
| ATCGGACAGCTTCAAGAAGA+CGG | 0.566546 | 5.4:+13436602 | None:intergenic |
| GTGATTAATGCGACTTTACG+CGG | 0.567516 | 5.4:+13436937 | None:intergenic |
| CCAATGCGCAGCGACTTTGG+AGG | 0.569706 | 5.4:+13436453 | None:intergenic |
| CTACCGGAAGATCTCACATT+CGG | 0.571219 | 5.4:-13436567 | MS.gene59455:CDS |
| GCTGTTGGAAGAATCAAGAT+CGG | 0.576069 | 5.4:-13435893 | MS.gene59455:CDS |
| TGTGAGCTTTGTGAGCGTTG+TGG | 0.581718 | 5.4:+13436785 | None:intergenic |
| GTCGAGCCAGCGACGGAGGG+AGG | 0.584651 | 5.4:+13436729 | None:intergenic |
| GCGACGGAGGGAGGAAGCGT+CGG | 0.584974 | 5.4:+13436738 | None:intergenic |
| TTGTGTCGAGCCAGCGACGG+AGG | 0.585658 | 5.4:+13436725 | None:intergenic |
| GGTTGATAATGATGTTGAGA+TGG | 0.603211 | 5.4:-13435546 | MS.gene59455:CDS |
| TGTGTCGAGCCAGCGACGGA+GGG | 0.608791 | 5.4:+13436726 | None:intergenic |
| CTAAGTGCGTCAAGAGATTG+GGG | 0.613784 | 5.4:-13435842 | MS.gene59455:CDS |
| ATGTCGCCGTTTGTTGTAGA+CGG | 0.614596 | 5.4:+13436970 | None:intergenic |
| GTGATTATGTTGAAGCGATG+TGG | 0.617088 | 5.4:-13435811 | MS.gene59455:CDS |
| ACCGGAATCACAGGCCAAGA+CGG | 0.619372 | 5.4:-13436916 | MS.gene59455:CDS |
| GTTTGTTGTAGACGGTGTTG+GGG | 0.619696 | 5.4:+13436978 | None:intergenic |
| CGTAAAGTCGCATTAATCAC+CGG | 0.619954 | 5.4:-13436934 | MS.gene59455:CDS |
| CGGTAGCGTCGATATGAGAT+CGG | 0.622385 | 5.4:+13436584 | None:intergenic |
| GTGTGTTGAAGTTTGATGAA+CGG | 0.622841 | 5.4:+13436836 | None:intergenic |
| AGAAAGTGCTTGTTGATGCT+GGG | 0.623449 | 5.4:-13435514 | MS.gene59455:CDS |
| GAACGGAGTAGCCTTTGTTG+AGG | 0.625343 | 5.4:+13436872 | None:intergenic |
| GAATTGTGTCGAGCCAGCGA+CGG | 0.625807 | 5.4:+13436722 | None:intergenic |
| ACGGAATTCCTCCTCAACAA+AGG | 0.626654 | 5.4:-13436883 | MS.gene59455:CDS |
| ACGGCGAATTAGGCCGTGAA+CGG | 0.632242 | 5.4:+13436855 | None:intergenic |
| GGCGACAGAGGATTCACATA+CGG | 0.632757 | 5.4:-13435750 | MS.gene59455:CDS |
| CGCTGCACAGTCTCACGTCG+CGG | 0.634519 | 5.4:-13436677 | MS.gene59455:CDS |
| TTATGTTGGATTGAATTGGA+AGG | 0.637434 | 5.4:-13435699 | MS.gene59455:CDS |
| AACGGAGTCGTTTCAGACTG+CGG | 0.644350 | 5.4:+13436499 | None:intergenic |
| ACTGCCGATGTAGTTGCTAC+CGG | 0.645249 | 5.4:-13436631 | MS.gene59455:CDS |
| CGAGATTGTAAACTTCATCA+GGG | 0.657924 | 5.4:+13436698 | None:intergenic |
| TGAGCTTTGTGAGCGTTGTG+GGG | 0.664259 | 5.4:+13436787 | None:intergenic |
| CCAAGACGGATCATACCTAA+CGG | 0.664395 | 5.4:-13436902 | MS.gene59455:CDS |
| AATCATGAATCACCACGTAG+AGG | 0.676462 | 5.4:-13435947 | MS.gene59455:CDS |
| ACGAAATTCTCTCCTCTACG+TGG | 0.681620 | 5.4:+13435935 | None:intergenic |
| TGATTATGTTGTGGCGACAG+AGG | 0.688973 | 5.4:-13435762 | MS.gene59455:CDS |
| GAGGCGGCATAAGGAGACCG+AGG | 0.697186 | 5.4:+13436472 | None:intergenic |
| ATTAATGCGACTTTACGCGG+TGG | 0.709409 | 5.4:+13436940 | None:intergenic |
| AGCACCGGTAGCAACTACAT+CGG | 0.710932 | 5.4:+13436627 | None:intergenic |
| AAAGGCTGATGATTATGTTG+TGG | 0.716548 | 5.4:-13435771 | MS.gene59455:CDS |
| GACAGAGGATTCACATACGG+TGG | 0.720455 | 5.4:-13435747 | MS.gene59455:CDS |
| GGAGTCGTTTCAGACTGCGG+CGG | 0.740688 | 5.4:+13436502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTACATATCTAAT+AGG | - | chr5.4:13436402-13436421 | MS.gene59455:intron | 15.0% |
| !! | AAATAACATTGATACTGATA+TGG | - | chr5.4:13436375-13436394 | MS.gene59455:intron | 20.0% |
| !!! | TGATATGTAACTAACTTTTA+TGG | - | chr5.4:13436450-13436469 | MS.gene59455:intron | 20.0% |
| ! | AATGAAATTAGCAATCGATA+CGG | - | chr5.4:13436107-13436126 | MS.gene59455:intron | 25.0% |
| ! | TTAAGATTATCAACTTCAGT+AGG | + | chr5.4:13436846-13436865 | None:intergenic | 25.0% |
| !! | CTAACTTTTACATCTCAAAT+TGG | - | chr5.4:13436342-13436361 | MS.gene59455:intron | 25.0% |
| !! | CTAACTTTTACATCTCTAAT+AGG | - | chr5.4:13436134-13436153 | MS.gene59455:intron | 25.0% |
| !! | CTAACTTTTATGGATCTAAT+AGG | - | chr5.4:13436460-13436479 | MS.gene59455:CDS | 25.0% |
| !! | TATGGAATTTTTGCTTGTAA+TGG | - | chr5.4:13436507-13436526 | MS.gene59455:CDS | 25.0% |
| !! | TTTGAGATGTAAAAGTTAGT+TGG | + | chr5.4:13436341-13436360 | None:intergenic | 25.0% |
| !!! | AAGTTAGTTGGTGTTATTTT+TGG | + | chr5.4:13436329-13436348 | None:intergenic | 25.0% |
| !!! | ACTGAAGTTGATAATCTTAA+AGG | - | chr5.4:13436846-13436865 | MS.gene59455:CDS | 25.0% |
| AGTAAAGCTAAGAAAGTTCT+TGG | - | chr5.4:13436876-13436895 | MS.gene59455:CDS | 30.0% | |
| CAAAAATTCCATATGCTTCA+CGG | + | chr5.4:13436500-13436519 | None:intergenic | 30.0% | |
| TTATGTTGGATTGAATTGGA+AGG | - | chr5.4:13436788-13436807 | MS.gene59455:CDS | 30.0% | |
| TTGGTTATGTTGGATTGAAT+TGG | - | chr5.4:13436784-13436803 | MS.gene59455:CDS | 30.0% | |
| ! | CTAACTTTTACATCTCGAAT+AGG | - | chr5.4:13436299-13436318 | MS.gene59455:intron | 30.0% |
| AAAGGCTGATGATTATGTTG+TGG | - | chr5.4:13436716-13436735 | MS.gene59455:CDS | 35.0% | |
| AAGCTAAGAAAGTTCTTGGT+TGG | - | chr5.4:13436880-13436899 | MS.gene59455:CDS | 35.0% | |
| AGCTCTTCAAAACTAACCTT+AGG | + | chr5.4:13436909-13436928 | None:intergenic | 35.0% | |
| CGAGATTGTAAACTTCATCA+GGG | + | chr5.4:13435792-13435811 | None:intergenic | 35.0% | |
| GTGTGTTGAAGTTTGATGAA+CGG | + | chr5.4:13435654-13435673 | None:intergenic | 35.0% | |
| ! | TGGAGTTGATCCAAACATTT+CGG | + | chr5.4:13435965-13435984 | None:intergenic | 35.0% |
| !! | CTTCAGAGTAAGTTGTTTCT+TGG | - | chr5.4:13436618-13436637 | MS.gene59455:CDS | 35.0% |
| !! | GAGTTTTTGGAAGTTGCTTT+TGG | - | chr5.4:13436765-13436784 | MS.gene59455:CDS | 35.0% |
| !! | GGTTGATAATGATGTTGAGA+TGG | - | chr5.4:13436941-13436960 | MS.gene59455:CDS | 35.0% |
| !! | TGAAGAGCTTGTTAGAATGA+TGG | - | chr5.4:13436920-13436939 | MS.gene59455:CDS | 35.0% |
| !!! | GAAGTTGCTTTTGGTTATGT+TGG | - | chr5.4:13436774-13436793 | MS.gene59455:CDS | 35.0% |
| AATCATGAATCACCACGTAG+AGG | - | chr5.4:13436540-13436559 | MS.gene59455:CDS | 40.0% | |
| AGGAAGATTACTAGAGCTGT+TGG | - | chr5.4:13436579-13436598 | MS.gene59455:CDS | 40.0% | |
| AGTTCTTGGTTGGAAACCTA+AGG | - | chr5.4:13436890-13436909 | MS.gene59455:CDS | 40.0% | |
| AGTTTGATGAACGGCGAATT+AGG | + | chr5.4:13435645-13435664 | None:intergenic | 40.0% | |
| CGTAAAGTCGCATTAATCAC+CGG | - | chr5.4:13435553-13435572 | MS.gene59455:CDS | 40.0% | |
| CTGTTGGAAGAATCAAGATC+GGG | - | chr5.4:13436595-13436614 | MS.gene59455:CDS | 40.0% | |
| GAGGAGAGAATTTCGTTACA+AGG | - | chr5.4:13436559-13436578 | MS.gene59455:CDS | 40.0% | |
| GCGAGATTGTAAACTTCATC+AGG | + | chr5.4:13435793-13435812 | None:intergenic | 40.0% | |
| GCTGTTGGAAGAATCAAGAT+CGG | - | chr5.4:13436594-13436613 | MS.gene59455:CDS | 40.0% | |
| GTGAATTACCGTGAAGCATA+TGG | - | chr5.4:13436489-13436508 | MS.gene59455:CDS | 40.0% | |
| GTGATTAATGCGACTTTACG+CGG | + | chr5.4:13435553-13435572 | None:intergenic | 40.0% | |
| GTGATTATGTTGAAGCGATG+TGG | - | chr5.4:13436676-13436695 | MS.gene59455:CDS | 40.0% | |
| GTTGATGCTACAACAGGAAA+AGG | - | chr5.4:13436698-13436717 | MS.gene59455:CDS | 40.0% | |
| TGATGTTGAGATGGCTAAGA+AGG | - | chr5.4:13436950-13436969 | MS.gene59455:CDS | 40.0% | |
| ! | ACATACGGTGGAAGAGTTTT+TGG | - | chr5.4:13436752-13436771 | MS.gene59455:CDS | 40.0% |
| !! | AGAAAGTGCTTGTTGATGCT+GGG | - | chr5.4:13436973-13436992 | MS.gene59455:CDS | 40.0% |
| AAACGACTCCGTTTCATCCT+CGG | - | chr5.4:13435998-13436017 | MS.gene59455:CDS | 45.0% | |
| AACAAAGGCTACTCCGTTCA+CGG | - | chr5.4:13435619-13435638 | MS.gene59455:CDS | 45.0% | |
| ACCTAAGTGCGTCAAGAGAT+TGG | - | chr5.4:13436643-13436662 | MS.gene59455:CDS | 45.0% | |
| ACGAAATTCTCTCCTCTACG+TGG | + | chr5.4:13436555-13436574 | None:intergenic | 45.0% | |
| ACGGAATTCCTCCTCAACAA+AGG | - | chr5.4:13435604-13435623 | MS.gene59455:CDS | 45.0% | |
| ACTACATCGGCAGTGTAATC+AGG | + | chr5.4:13435850-13435869 | None:intergenic | 45.0% | |
| ATCGGACAGCTTCAAGAAGA+CGG | + | chr5.4:13435888-13435907 | None:intergenic | 45.0% | |
| ATTAATGCGACTTTACGCGG+TGG | + | chr5.4:13435550-13435569 | None:intergenic | 45.0% | |
| CACATTCGGTACTATCAAGC+TGG | - | chr5.4:13435934-13435953 | MS.gene59455:CDS | 45.0% | |
| CCAACACCGTCTACAACAAA+CGG | - | chr5.4:13435511-13435530 | MS.gene59455:CDS | 45.0% | |
| CCAAGACGGATCATACCTAA+CGG | - | chr5.4:13435585-13435604 | MS.gene59455:CDS | 45.0% | |
| CCTAAGTGCGTCAAGAGATT+GGG | - | chr5.4:13436644-13436663 | MS.gene59455:CDS | 45.0% | |
| CTAAGTGCGTCAAGAGATTG+GGG | - | chr5.4:13436645-13436664 | MS.gene59455:CDS | 45.0% | |
| CTACCGGAAGATCTCACATT+CGG | - | chr5.4:13435920-13435939 | MS.gene59455:CDS | 45.0% | |
| GCATTAATCACCGGAATCAC+AGG | - | chr5.4:13435562-13435581 | MS.gene59455:CDS | 45.0% | |
| GCTGGATCTTCCGAAATGTT+TGG | - | chr5.4:13435952-13435971 | MS.gene59455:CDS | 45.0% | |
| GTACCGAATGTGAGATCTTC+CGG | + | chr5.4:13435926-13435945 | None:intergenic | 45.0% | |
| TAAGGAGACCGAGGATGAAA+CGG | + | chr5.4:13436009-13436028 | None:intergenic | 45.0% | |
| TCAAGAGATTGGGGATTTGC+TGG | - | chr5.4:13436654-13436673 | MS.gene59455:CDS | 45.0% | |
| TGATTATGTTGTGGCGACAG+AGG | - | chr5.4:13436725-13436744 | MS.gene59455:CDS | 45.0% | |
| TGTTGAGGAGGAATTCCGTT+AGG | + | chr5.4:13435603-13435622 | None:intergenic | 45.0% | |
| ! | GATGTGGTTGATGCTACAAC+AGG | - | chr5.4:13436692-13436711 | MS.gene59455:CDS | 45.0% |
| !! | ATGTCGCCGTTTGTTGTAGA+CGG | + | chr5.4:13435520-13435539 | None:intergenic | 45.0% |
| !! | CGTTTGTTGTAGACGGTGTT+GGG | + | chr5.4:13435513-13435532 | None:intergenic | 45.0% |
| !! | GAGAAAGTGCTTGTTGATGC+TGG | - | chr5.4:13436972-13436991 | MS.gene59455:CDS | 45.0% |
| !! | GTTTGTTGTAGACGGTGTTG+GGG | + | chr5.4:13435512-13435531 | None:intergenic | 45.0% |
| AACGGAGTCGTTTCAGACTG+CGG | + | chr5.4:13435991-13436010 | None:intergenic | 50.0% | |
| ACTGCCGATGTAGTTGCTAC+CGG | - | chr5.4:13435856-13435875 | MS.gene59455:CDS | 50.0% | |
| CCCAATCTCTTGACGCACTT+AGG | + | chr5.4:13436647-13436666 | None:intergenic | 50.0% | |
| CCGTTAGGTATGATCCGTCT+TGG | + | chr5.4:13435588-13435607 | None:intergenic | 50.0% | |
| CGATCTCATATCGACGCTAC+CGG | - | chr5.4:13435904-13435923 | MS.gene59455:CDS | 50.0% | |
| GAACGGAGTAGCCTTTGTTG+AGG | + | chr5.4:13435618-13435637 | None:intergenic | 50.0% | |
| GACAGAGGATTCACATACGG+TGG | - | chr5.4:13436740-13436759 | MS.gene59455:CDS | 50.0% | |
| GGCGACAGAGGATTCACATA+CGG | - | chr5.4:13436737-13436756 | MS.gene59455:CDS | 50.0% | |
| ! | GTGAGCTTTGTGAGCGTTGT+GGG | + | chr5.4:13435704-13435723 | None:intergenic | 50.0% |
| ! | TGAGCTTTGTGAGCGTTGTG+GGG | + | chr5.4:13435703-13435722 | None:intergenic | 50.0% |
| ! | TGTGAGCTTTGTGAGCGTTG+TGG | + | chr5.4:13435705-13435724 | None:intergenic | 50.0% |
| ! | TTCAAGAAGACGGAGAGCAC+CGG | + | chr5.4:13435878-13435897 | None:intergenic | 50.0% |
| !! | AGCACCGGTAGCAACTACAT+CGG | + | chr5.4:13435863-13435882 | None:intergenic | 50.0% |
| !! | CCGTTTGTTGTAGACGGTGT+TGG | + | chr5.4:13435514-13435533 | None:intergenic | 50.0% |
| !! | CGGTAGCGTCGATATGAGAT+CGG | + | chr5.4:13435906-13435925 | None:intergenic | 50.0% |
| AATGCGACTTTACGCGGTGG+AGG | + | chr5.4:13435547-13435566 | None:intergenic | 55.0% | |
| ACCGGAATCACAGGCCAAGA+CGG | - | chr5.4:13435571-13435590 | MS.gene59455:CDS | 55.0% | |
| ACGGCGAATTAGGCCGTGAA+CGG | + | chr5.4:13435635-13435654 | None:intergenic | 55.0% | |
| CGGAGTAGCCTTTGTTGAGG+AGG | + | chr5.4:13435615-13435634 | None:intergenic | 55.0% | |
| GAATTGTGTCGAGCCAGCGA+CGG | + | chr5.4:13435768-13435787 | None:intergenic | 55.0% | |
| GTACCAATGCGCAGCGACTT+TGG | + | chr5.4:13436040-13436059 | None:intergenic | 55.0% | |
| TCCGTCTTGGCCTGTGATTC+CGG | + | chr5.4:13435575-13435594 | None:intergenic | 55.0% | |
| CCAATGCGCAGCGACTTTGG+AGG | + | chr5.4:13436037-13436056 | None:intergenic | 60.0% | |
| CCTCCAAAGTCGCTGCGCAT+TGG | - | chr5.4:13436034-13436053 | MS.gene59455:intron | 60.0% | |
| GGAGTCGTTTCAGACTGCGG+CGG | + | chr5.4:13435988-13436007 | None:intergenic | 60.0% | |
| ! | ATGCGCAGCGACTTTGGAGG+CGG | + | chr5.4:13436034-13436053 | None:intergenic | 60.0% |
| ! | GCGACTTTGGAGGCGGCATA+AGG | + | chr5.4:13436027-13436046 | None:intergenic | 60.0% |
| !! | GGAGGAAGCGTCGGAGAGAT+CGG | + | chr5.4:13435743-13435762 | None:intergenic | 60.0% |
| CGCTGCACAGTCTCACGTCG+CGG | - | chr5.4:13435810-13435829 | MS.gene59455:CDS | 65.0% | |
| GAGGCGGCATAAGGAGACCG+AGG | + | chr5.4:13436018-13436037 | None:intergenic | 65.0% | |
| GTCGTTTCAGACTGCGGCGG+TGG | + | chr5.4:13435985-13436004 | None:intergenic | 65.0% | |
| TGTGTCGAGCCAGCGACGGA+GGG | + | chr5.4:13435764-13435783 | None:intergenic | 65.0% | |
| TTGTGTCGAGCCAGCGACGG+AGG | + | chr5.4:13435765-13435784 | None:intergenic | 65.0% | |
| ACGCTTCCTCCCTCCGTCGC+TGG | - | chr5.4:13435752-13435771 | MS.gene59455:CDS | 70.0% | |
| ! | GCGACGGAGGGAGGAAGCGT+CGG | + | chr5.4:13435752-13435771 | None:intergenic | 70.0% |
| GTCGAGCCAGCGACGGAGGG+AGG | + | chr5.4:13435761-13435780 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 13435487 | 13437022 | 13435487 | ID=MS.gene59455 |
| chr5.4 | mRNA | 13435487 | 13437022 | 13435487 | ID=MS.gene59455.t1;Parent=MS.gene59455 |
| chr5.4 | exon | 13436454 | 13437022 | 13436454 | ID=MS.gene59455.t1.exon1;Parent=MS.gene59455.t1 |
| chr5.4 | CDS | 13436454 | 13437022 | 13436454 | ID=cds.MS.gene59455.t1;Parent=MS.gene59455.t1 |
| chr5.4 | exon | 13435487 | 13436027 | 13435487 | ID=MS.gene59455.t1.exon2;Parent=MS.gene59455.t1 |
| chr5.4 | CDS | 13435487 | 13436027 | 13435487 | ID=cds.MS.gene59455.t1;Parent=MS.gene59455.t1 |
| Gene Sequence |
| Protein sequence |
