Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59456.t1 | XP_003612144.1 | 97 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 1.30E-203 | 718.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59456.t1 | Q9SNY3 | 85.5 | 344 | 49 | 1 | 23 | 366 | 16 | 358 | 1.2e-173 | 610.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59456.t1 | A0A072UDQ2 | 97.0 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 9.4e-204 | 718.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59456 | MS.gene96326 | PPI |
| MS.gene59456 | MS.gene20834 | PPI |
| MS.gene20783 | MS.gene59456 | PPI |
| MS.gene59456 | MS.gene073336 | PPI |
| MS.gene59456 | MS.gene012318 | PPI |
| MS.gene59456 | MS.gene07262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59456.t1 | MTR_5g021770 | 96.995 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 0.0 | 742 |
| MS.gene59456.t1 | MTR_5g021760 | 96.175 | 366 | 14 | 0 | 1 | 366 | 1 | 366 | 0.0 | 736 |
| MS.gene59456.t1 | MTR_4g120030 | 24.633 | 341 | 193 | 13 | 23 | 344 | 110 | 405 | 8.83e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59456.t1 | AT5G66280 | 83.708 | 356 | 54 | 3 | 13 | 366 | 5 | 358 | 0.0 | 627 |
| MS.gene59456.t1 | AT3G51160 | 80.992 | 363 | 67 | 2 | 4 | 366 | 10 | 370 | 0.0 | 625 |
| MS.gene59456.t1 | AT2G47650 | 24.713 | 348 | 195 | 14 | 23 | 346 | 118 | 422 | 1.23e-11 | 66.2 |
| MS.gene59456.t1 | AT2G47650 | 25.989 | 354 | 189 | 17 | 23 | 346 | 118 | 428 | 4.49e-11 | 64.3 |
Find 91 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAAGTTGATAATCTTAA+AGG | 0.192272 | 5.4:-13452334 | MS.gene59456:CDS |
| TGTTGGCGGTGTTGGTGTTT+TGG | 0.249858 | 5.4:+13453405 | None:intergenic |
| CTTCAAAGTAAGTTGTTTCT+TGG | 0.276412 | 5.4:-13452562 | MS.gene59456:CDS |
| TTTCCAACCAAGAACTTTCT+TGG | 0.301061 | 5.4:+13452297 | None:intergenic |
| AGTAAAGCCAAGAAAGTTCT+TGG | 0.319296 | 5.4:-13452304 | MS.gene59456:CDS |
| TCCGTCTTGGCCAGTGATTC+CGG | 0.339660 | 5.4:+13453336 | None:intergenic |
| AGTTTGACGAACGGCGAATT+AGG | 0.352603 | 5.4:+13453266 | None:intergenic |
| GCTGGATCTTCTGAAATGTT+TGG | 0.354742 | 5.4:-13452956 | MS.gene59456:CDS |
| ACCTAAGTGCGTCGAGAGAT+TGG | 0.376609 | 5.4:-13452537 | MS.gene59456:CDS |
| TGTTGAGGAGGAATTCTGTT+AGG | 0.384121 | 5.4:+13453308 | None:intergenic |
| CCTAAGTGCGTCGAGAGATT+GGG | 0.389278 | 5.4:-13452536 | MS.gene59456:CDS |
| AGAGGAAGCGTCAGAGAGAT+TGG | 0.392324 | 5.4:+13453168 | None:intergenic |
| TTGGTTATGTTGGATTGAAT+TGG | 0.394470 | 5.4:-13452396 | MS.gene59456:CDS |
| GTGAATTATCGTGAAGCATA+TGG | 0.397117 | 5.4:-13452691 | MS.gene59456:CDS |
| ACAACATCGGCAGTGTAATC+AGG | 0.400097 | 5.4:+13453061 | None:intergenic |
| GCGAGGTTGTAAACTTCGTC+AGG | 0.409532 | 5.4:+13453118 | None:intergenic |
| GTACCAATGCGCAGCGACTT+TGG | 0.414772 | 5.4:+13452871 | None:intergenic |
| CCGTTTGTTGTTGGCGGTGT+TGG | 0.418382 | 5.4:+13453397 | None:intergenic |
| AGGAAGATTACTAGAGTTGT+TGG | 0.423133 | 5.4:-13452601 | MS.gene59456:CDS |
| TGATATTGAGATGGCTAAGA+AGG | 0.440336 | 5.4:-13452230 | MS.gene59456:CDS |
| TCGAGAGATTGGGGATTTGC+CGG | 0.445475 | 5.4:-13452526 | MS.gene59456:CDS |
| ACGCTTCCTCTCTCCGTCGC+TGG | 0.449912 | 5.4:-13453156 | MS.gene59456:CDS |
| CCAACACCGCCAACAACAAA+CGG | 0.451502 | 5.4:-13453397 | MS.gene59456:CDS |
| GAGAAAGTCCTTGTTGATGC+TGG | 0.452535 | 5.4:-13452208 | MS.gene59456:CDS |
| CGATCTCATATCGATGCAAC+AGG | 0.466501 | 5.4:-13453004 | MS.gene59456:CDS |
| GCATTAATCACCGGAATCAC+TGG | 0.477232 | 5.4:-13453346 | MS.gene59456:CDS |
| CCTCCAAAGTCGCTGCGCAT+TGG | 0.478635 | 5.4:-13452874 | MS.gene59456:intron |
| CTGTTAGGTATGATCCGTCT+TGG | 0.482292 | 5.4:+13453323 | None:intergenic |
| GTGGTGTCGCCGTTTGTTGT+TGG | 0.483145 | 5.4:+13453388 | None:intergenic |
| AGTTCTTGGTTGGAAACCTA+AGG | 0.486640 | 5.4:-13452290 | MS.gene59456:CDS |
| GAGGAGAGAATTTCGTTACA+AGG | 0.489476 | 5.4:-13452621 | MS.gene59456:CDS |
| GATGTGGTTGATGCTACAAC+AGG | 0.492498 | 5.4:-13452488 | MS.gene59456:CDS |
| CCCAATCTCTCGACGCACTT+AGG | 0.494377 | 5.4:+13452536 | None:intergenic |
| TGAAGAGCTTGTTAGAATGA+TGG | 0.497175 | 5.4:-13452260 | MS.gene59456:CDS |
| AAGCCAAGAAAGTTCTTGGT+TGG | 0.498900 | 5.4:-13452300 | MS.gene59456:CDS |
| AGCTCTTCAAAACTAACCTT+AGG | 0.505928 | 5.4:+13452274 | None:intergenic |
| CACATACGGTACTATCAAGC+TGG | 0.507207 | 5.4:-13452974 | MS.gene59456:CDS |
| TTGTTGGAAGAATCAAGATC+GGG | 0.530932 | 5.4:-13452585 | MS.gene59456:CDS |
| GCGACTTTGGAGGCGGCGTA+AGG | 0.533507 | 5.4:+13452884 | None:intergenic |
| ATGCGCAGCGACTTTGGAGG+CGG | 0.536171 | 5.4:+13452877 | None:intergenic |
| TTAAGATTATCAACTTCAGT+AGG | 0.538937 | 5.4:+13452337 | None:intergenic |
| GTCGAGCCAGCGACGGAGAG+AGG | 0.549312 | 5.4:+13453150 | None:intergenic |
| GTGTCGCCGTTTGTTGTTGG+CGG | 0.555514 | 5.4:+13453391 | None:intergenic |
| AGAAAGTCCTTGTTGATGCT+GGG | 0.563986 | 5.4:-13452207 | MS.gene59456:CDS |
| CGGAGTAGCCTTTGTTGAGG+AGG | 0.568302 | 5.4:+13453296 | None:intergenic |
| CCAATGCGCAGCGACTTTGG+AGG | 0.569706 | 5.4:+13452874 | None:intergenic |
| GTTGTTGGAAGAATCAAGAT+CGG | 0.578552 | 5.4:-13452586 | MS.gene59456:CDS |
| CTAAGTGCGTCGAGAGATTG+GGG | 0.581879 | 5.4:-13452535 | MS.gene59456:CDS |
| ACTGCCGATGTTGTTGCTAC+CGG | 0.584186 | 5.4:-13453052 | MS.gene59456:CDS |
| TTCAAGAAGACGGAGCGCAC+CGG | 0.584604 | 5.4:+13453033 | None:intergenic |
| GACTTTCCGCAGTGGAGGAG+TGG | 0.587386 | 5.4:+13453369 | None:intergenic |
| ATCGGACGGCTTCAAGAAGA+CGG | 0.590667 | 5.4:+13453023 | None:intergenic |
| ACCGGAATCACTGGCCAAGA+CGG | 0.594384 | 5.4:-13453337 | MS.gene59456:CDS |
| ACGAACGGCGAATTAGGCCG+TGG | 0.595994 | 5.4:+13453272 | None:intergenic |
| GGTTGATGCTACAACAGGAA+AGG | 0.599717 | 5.4:-13452483 | MS.gene59456:CDS |
| CATCGCTTCAACATAATCAC+CGG | 0.605949 | 5.4:+13452507 | None:intergenic |
| TGATGATTATGTTGTGGCGA+CGG | 0.608282 | 5.4:-13452458 | MS.gene59456:CDS |
| GGACGGAGTAGCCTTTGTTG+AGG | 0.608416 | 5.4:+13453293 | None:intergenic |
| GGCGACGGAGGATTCGCATA+CGG | 0.610465 | 5.4:-13452443 | MS.gene59456:CDS |
| GTTGATGCTACAACAGGAAA+GGG | 0.610852 | 5.4:-13452482 | MS.gene59456:CDS |
| CGGAAAGTCGCATTAATCAC+CGG | 0.613778 | 5.4:-13453355 | MS.gene59456:CDS |
| ACGGCGAATTAGGCCGTGGA+CGG | 0.616647 | 5.4:+13453276 | None:intergenic |
| GTGATTATGTTGAAGCGATG+TGG | 0.617088 | 5.4:-13452504 | MS.gene59456:CDS |
| AATGCGACTTTCCGCAGTGG+AGG | 0.619549 | 5.4:+13453364 | None:intergenic |
| ACAGAATTCCTCCTCAACAA+AGG | 0.619656 | 5.4:-13453304 | MS.gene59456:CDS |
| GTGTGTTGAAGTTTGACGAA+CGG | 0.622272 | 5.4:+13453257 | None:intergenic |
| CAACAGGAAGATCTCACATA+CGG | 0.624247 | 5.4:-13452988 | MS.gene59456:CDS |
| AACAAAGGCTACTCCGTCCA+CGG | 0.626974 | 5.4:-13453289 | MS.gene59456:CDS |
| GGATAGTGTCGAGCCAGCGA+CGG | 0.629653 | 5.4:+13453143 | None:intergenic |
| CAATGTACCCAGCATCAACA+AGG | 0.631014 | 5.4:+13452200 | None:intergenic |
| TGCATCGATATGAGATCGGA+CGG | 0.632798 | 5.4:+13453009 | None:intergenic |
| GGTTGATAATGATATTGAGA+TGG | 0.632801 | 5.4:-13452239 | MS.gene59456:CDS |
| CTGTTGCATCGATATGAGAT+CGG | 0.632916 | 5.4:+13453005 | None:intergenic |
| TTATGTTGGATTGAATTGGA+AGG | 0.637434 | 5.4:-13452392 | MS.gene59456:CDS |
| AACGAAGTCGTTTCAGACTG+CGG | 0.644350 | 5.4:+13452920 | None:intergenic |
| TGAGCTTTGTGAGTGTCGTG+TGG | 0.658563 | 5.4:+13453208 | None:intergenic |
| AACCGCGACGTGAGACTGTG+CGG | 0.665940 | 5.4:+13453096 | None:intergenic |
| CGCCGCACAGTCTCACGTCG+CGG | 0.668155 | 5.4:-13453098 | MS.gene59456:CDS |
| CGAGGTTGTAAACTTCGTCA+GGG | 0.672942 | 5.4:+13453119 | None:intergenic |
| AATCATGAATCACCACGTAG+AGG | 0.676462 | 5.4:-13452640 | MS.gene59456:CDS |
| GACGGAGGATTCGCATACGG+TGG | 0.678471 | 5.4:-13452440 | MS.gene59456:CDS |
| TGATTATGTTGTGGCGACGG+AGG | 0.681152 | 5.4:-13452455 | MS.gene59456:CDS |
| ACGAAATTCTCTCCTCTACG+TGG | 0.681620 | 5.4:+13452628 | None:intergenic |
| ATTAATGCGACTTTCCGCAG+TGG | 0.684074 | 5.4:+13453361 | None:intergenic |
| CGACGTGAGACTGTGCGGCG+AGG | 0.686982 | 5.4:+13453101 | None:intergenic |
| GGTTGTAAACTTCGTCAGGG+AGG | 0.692198 | 5.4:+13453122 | None:intergenic |
| GAGGCGGCGTAAGGAGACTG+AGG | 0.697451 | 5.4:+13452893 | None:intergenic |
| CGCACCGGTAGCAACAACAT+CGG | 0.701461 | 5.4:+13453048 | None:intergenic |
| AAGGGCTGATGATTATGTTG+TGG | 0.716548 | 5.4:-13452464 | MS.gene59456:CDS |
| GAAGTCGTTTCAGACTGCGG+CGG | 0.732622 | 5.4:+13452923 | None:intergenic |
| GCGACACCACTCCTCCACTG+CGG | 0.736296 | 5.4:-13453375 | MS.gene59456:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGCATAAATTAATGAAA+TGG | - | chr5.4:13452796-13452815 | MS.gene59456:intron | 15.0% |
| ! | TAATGAAATGGAAATAGCAA+CGG | - | chr5.4:13452808-13452827 | MS.gene59456:intron | 25.0% |
| ! | TTAAGATTATCAACTTCAGT+AGG | + | chr5.4:13453276-13453295 | None:intergenic | 25.0% |
| !! | TATGGAATTTTTGCTTGTAA+CGG | - | chr5.4:13452937-13452956 | MS.gene59456:CDS | 25.0% |
| !!! | ACTGAAGTTGATAATCTTAA+AGG | - | chr5.4:13453276-13453295 | MS.gene59456:CDS | 25.0% |
| TTATGTTGGATTGAATTGGA+AGG | - | chr5.4:13453218-13453237 | MS.gene59456:CDS | 30.0% | |
| TTGGTTATGTTGGATTGAAT+TGG | - | chr5.4:13453214-13453233 | MS.gene59456:CDS | 30.0% | |
| ! | CTAACTTTTACATCTCGAAT+AGG | - | chr5.4:13452890-13452909 | MS.gene59456:CDS | 30.0% |
| !! | CTTCAAAGTAAGTTGTTTCT+TGG | - | chr5.4:13453048-13453067 | MS.gene59456:CDS | 30.0% |
| !! | GGTTGATAATGATATTGAGA+TGG | - | chr5.4:13453371-13453390 | MS.gene59456:CDS | 30.0% |
| AGCTCTTCAAAACTAACCTT+AGG | + | chr5.4:13453339-13453358 | None:intergenic | 35.0% | |
| AGGAAGATTACTAGAGTTGT+TGG | - | chr5.4:13453009-13453028 | MS.gene59456:CDS | 35.0% | |
| AGTAAAGCCAAGAAAGTTCT+TGG | - | chr5.4:13453306-13453325 | MS.gene59456:CDS | 35.0% | |
| GTGAATTATCGTGAAGCATA+TGG | - | chr5.4:13452919-13452938 | MS.gene59456:CDS | 35.0% | |
| GTTGTTGGAAGAATCAAGAT+CGG | - | chr5.4:13453024-13453043 | MS.gene59456:CDS | 35.0% | |
| TGATATTGAGATGGCTAAGA+AGG | - | chr5.4:13453380-13453399 | MS.gene59456:CDS | 35.0% | |
| TTGTTGGAAGAATCAAGATC+GGG | - | chr5.4:13453025-13453044 | MS.gene59456:CDS | 35.0% | |
| TTTCCAACCAAGAACTTTCT+TGG | + | chr5.4:13453316-13453335 | None:intergenic | 35.0% | |
| !! | GAGTTTTTGGAAGTTGCTTT+TGG | - | chr5.4:13453195-13453214 | MS.gene59456:CDS | 35.0% |
| !! | TGAAGAGCTTGTTAGAATGA+TGG | - | chr5.4:13453350-13453369 | MS.gene59456:CDS | 35.0% |
| !!! | GAAGTTGCTTTTGGTTATGT+TGG | - | chr5.4:13453204-13453223 | MS.gene59456:CDS | 35.0% |
| AAGCCAAGAAAGTTCTTGGT+TGG | - | chr5.4:13453310-13453329 | MS.gene59456:CDS | 40.0% | |
| AAGGGCTGATGATTATGTTG+TGG | - | chr5.4:13453146-13453165 | MS.gene59456:CDS | 40.0% | |
| AATCATGAATCACCACGTAG+AGG | - | chr5.4:13452970-13452989 | MS.gene59456:CDS | 40.0% | |
| ACAGAATTCCTCCTCAACAA+AGG | - | chr5.4:13452306-13452325 | MS.gene59456:CDS | 40.0% | |
| AGAAAGTCCTTGTTGATGCT+GGG | - | chr5.4:13453403-13453422 | MS.gene59456:CDS | 40.0% | |
| AGTTCTTGGTTGGAAACCTA+AGG | - | chr5.4:13453320-13453339 | MS.gene59456:CDS | 40.0% | |
| CAACAGGAAGATCTCACATA+CGG | - | chr5.4:13452622-13452641 | MS.gene59456:CDS | 40.0% | |
| CATCGCTTCAACATAATCAC+CGG | + | chr5.4:13453106-13453125 | None:intergenic | 40.0% | |
| GAGGAGAGAATTTCGTTACA+AGG | - | chr5.4:13452989-13453008 | MS.gene59456:CDS | 40.0% | |
| GTGATTATGTTGAAGCGATG+TGG | - | chr5.4:13453106-13453125 | MS.gene59456:CDS | 40.0% | |
| GTGTGTTGAAGTTTGACGAA+CGG | + | chr5.4:13452356-13452375 | None:intergenic | 40.0% | |
| GTTGATGCTACAACAGGAAA+GGG | - | chr5.4:13453128-13453147 | MS.gene59456:CDS | 40.0% | |
| TGATGATTATGTTGTGGCGA+CGG | - | chr5.4:13453152-13453171 | MS.gene59456:CDS | 40.0% | |
| TGTTGAGGAGGAATTCTGTT+AGG | + | chr5.4:13452305-13452324 | None:intergenic | 40.0% | |
| ! | CTGTTGCATCGATATGAGAT+CGG | + | chr5.4:13452608-13452627 | None:intergenic | 40.0% |
| !! | GCTGGATCTTCTGAAATGTT+TGG | - | chr5.4:13452654-13452673 | MS.gene59456:CDS | 40.0% |
| AACGAAGTCGTTTCAGACTG+CGG | + | chr5.4:13452693-13452712 | None:intergenic | 45.0% | |
| ACAACATCGGCAGTGTAATC+AGG | + | chr5.4:13452552-13452571 | None:intergenic | 45.0% | |
| ACGAAATTCTCTCCTCTACG+TGG | + | chr5.4:13452985-13453004 | None:intergenic | 45.0% | |
| AGTTTGACGAACGGCGAATT+AGG | + | chr5.4:13452347-13452366 | None:intergenic | 45.0% | |
| ATTAATGCGACTTTCCGCAG+TGG | + | chr5.4:13452252-13452271 | None:intergenic | 45.0% | |
| CAATGTACCCAGCATCAACA+AGG | + | chr5.4:13453413-13453432 | None:intergenic | 45.0% | |
| CACATACGGTACTATCAAGC+TGG | - | chr5.4:13452636-13452655 | MS.gene59456:CDS | 45.0% | |
| CGAGGTTGTAAACTTCGTCA+GGG | + | chr5.4:13452494-13452513 | None:intergenic | 45.0% | |
| CGATCTCATATCGATGCAAC+AGG | - | chr5.4:13452606-13452625 | MS.gene59456:CDS | 45.0% | |
| CGGAAAGTCGCATTAATCAC+CGG | - | chr5.4:13452255-13452274 | MS.gene59456:CDS | 45.0% | |
| CTGTTAGGTATGATCCGTCT+TGG | + | chr5.4:13452290-13452309 | None:intergenic | 45.0% | |
| GAGAAAGTCCTTGTTGATGC+TGG | - | chr5.4:13453402-13453421 | MS.gene59456:CDS | 45.0% | |
| GCATTAATCACCGGAATCAC+TGG | - | chr5.4:13452264-13452283 | MS.gene59456:CDS | 45.0% | |
| ! | GATGTGGTTGATGCTACAAC+AGG | - | chr5.4:13453122-13453141 | MS.gene59456:CDS | 45.0% |
| ! | GCATACGGTGGAAGAGTTTT+TGG | - | chr5.4:13453182-13453201 | MS.gene59456:CDS | 45.0% |
| ! | GGTTGATGCTACAACAGGAA+AGG | - | chr5.4:13453127-13453146 | MS.gene59456:CDS | 45.0% |
| ! | TGCATCGATATGAGATCGGA+CGG | + | chr5.4:13452604-13452623 | None:intergenic | 45.0% |
| AACAAAGGCTACTCCGTCCA+CGG | - | chr5.4:13452321-13452340 | MS.gene59456:CDS | 50.0% | |
| ACCTAAGTGCGTCGAGAGAT+TGG | - | chr5.4:13453073-13453092 | MS.gene59456:CDS | 50.0% | |
| ACTGCCGATGTTGTTGCTAC+CGG | - | chr5.4:13452558-13452577 | MS.gene59456:CDS | 50.0% | |
| ATCGGACGGCTTCAAGAAGA+CGG | + | chr5.4:13452590-13452609 | None:intergenic | 50.0% | |
| CCAACACCGCCAACAACAAA+CGG | - | chr5.4:13452213-13452232 | MS.gene59456:CDS | 50.0% | |
| CCTAAGTGCGTCGAGAGATT+GGG | - | chr5.4:13453074-13453093 | MS.gene59456:CDS | 50.0% | |
| CTAAGTGCGTCGAGAGATTG+GGG | - | chr5.4:13453075-13453094 | MS.gene59456:CDS | 50.0% | |
| GCGAGGTTGTAAACTTCGTC+AGG | + | chr5.4:13452495-13452514 | None:intergenic | 50.0% | |
| GGTTGTAAACTTCGTCAGGG+AGG | + | chr5.4:13452491-13452510 | None:intergenic | 50.0% | |
| TCGAGAGATTGGGGATTTGC+CGG | - | chr5.4:13453084-13453103 | MS.gene59456:CDS | 50.0% | |
| TGATTATGTTGTGGCGACGG+AGG | - | chr5.4:13453155-13453174 | MS.gene59456:CDS | 50.0% | |
| ! | TGAGCTTTGTGAGTGTCGTG+TGG | + | chr5.4:13452405-13452424 | None:intergenic | 50.0% |
| !! | AGAGGAAGCGTCAGAGAGAT+TGG | + | chr5.4:13452445-13452464 | None:intergenic | 50.0% |
| !!! | GTTGGCGGTGTTGGTGTTTT+GGG | + | chr5.4:13452207-13452226 | None:intergenic | 50.0% |
| !!! | TGTTGGCGGTGTTGGTGTTT+TGG | + | chr5.4:13452208-13452227 | None:intergenic | 50.0% |
| AATGCGACTTTCCGCAGTGG+AGG | + | chr5.4:13452249-13452268 | None:intergenic | 55.0% | |
| ACCGGAATCACTGGCCAAGA+CGG | - | chr5.4:13452273-13452292 | MS.gene59456:CDS | 55.0% | |
| CCCAATCTCTCGACGCACTT+AGG | + | chr5.4:13453077-13453096 | None:intergenic | 55.0% | |
| CGGAGTAGCCTTTGTTGAGG+AGG | + | chr5.4:13452317-13452336 | None:intergenic | 55.0% | |
| GAAGTCGTTTCAGACTGCGG+CGG | + | chr5.4:13452690-13452709 | None:intergenic | 55.0% | |
| GGACGGAGTAGCCTTTGTTG+AGG | + | chr5.4:13452320-13452339 | None:intergenic | 55.0% | |
| GTACCAATGCGCAGCGACTT+TGG | + | chr5.4:13452742-13452761 | None:intergenic | 55.0% | |
| TCCGTCTTGGCCAGTGATTC+CGG | + | chr5.4:13452277-13452296 | None:intergenic | 55.0% | |
| TTCAAGAAGACGGAGCGCAC+CGG | + | chr5.4:13452580-13452599 | None:intergenic | 55.0% | |
| ! | CGCACCGGTAGCAACAACAT+CGG | + | chr5.4:13452565-13452584 | None:intergenic | 55.0% |
| !! | CCGTTTGTTGTTGGCGGTGT+TGG | + | chr5.4:13452216-13452235 | None:intergenic | 55.0% |
| !! | GTGGTGTCGCCGTTTGTTGT+TGG | + | chr5.4:13452225-13452244 | None:intergenic | 55.0% |
| !! | GTGTCGCCGTTTGTTGTTGG+CGG | + | chr5.4:13452222-13452241 | None:intergenic | 55.0% |
| AACCGCGACGTGAGACTGTG+CGG | + | chr5.4:13452517-13452536 | None:intergenic | 60.0% | |
| ACGAACGGCGAATTAGGCCG+TGG | + | chr5.4:13452341-13452360 | None:intergenic | 60.0% | |
| ACGGCGAATTAGGCCGTGGA+CGG | + | chr5.4:13452337-13452356 | None:intergenic | 60.0% | |
| CCAATGCGCAGCGACTTTGG+AGG | + | chr5.4:13452739-13452758 | None:intergenic | 60.0% | |
| CCTCCAAAGTCGCTGCGCAT+TGG | - | chr5.4:13452736-13452755 | MS.gene59456:intron | 60.0% | |
| GACGGAGGATTCGCATACGG+TGG | - | chr5.4:13453170-13453189 | MS.gene59456:CDS | 60.0% | |
| GACTTTCCGCAGTGGAGGAG+TGG | + | chr5.4:13452244-13452263 | None:intergenic | 60.0% | |
| GGCGACGGAGGATTCGCATA+CGG | - | chr5.4:13453167-13453186 | MS.gene59456:CDS | 60.0% | |
| ! | ATGCGCAGCGACTTTGGAGG+CGG | + | chr5.4:13452736-13452755 | None:intergenic | 60.0% |
| ! | GGATAGTGTCGAGCCAGCGA+CGG | + | chr5.4:13452470-13452489 | None:intergenic | 60.0% |
| ACGCTTCCTCTCTCCGTCGC+TGG | - | chr5.4:13452454-13452473 | MS.gene59456:CDS | 65.0% | |
| GAGGCGGCGTAAGGAGACTG+AGG | + | chr5.4:13452720-13452739 | None:intergenic | 65.0% | |
| GCGACACCACTCCTCCACTG+CGG | - | chr5.4:13452235-13452254 | MS.gene59456:CDS | 65.0% | |
| ! | GCGACTTTGGAGGCGGCGTA+AGG | + | chr5.4:13452729-13452748 | None:intergenic | 65.0% |
| CGACGTGAGACTGTGCGGCG+AGG | + | chr5.4:13452512-13452531 | None:intergenic | 70.0% | |
| CGCCGCACAGTCTCACGTCG+CGG | - | chr5.4:13452512-13452531 | MS.gene59456:CDS | 70.0% | |
| GTCGAGCCAGCGACGGAGAG+AGG | + | chr5.4:13452463-13452482 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 13452189 | 13453443 | 13452189 | ID=MS.gene59456 |
| chr5.4 | mRNA | 13452189 | 13453443 | 13452189 | ID=MS.gene59456.t1;Parent=MS.gene59456 |
| chr5.4 | exon | 13452875 | 13453443 | 13452875 | ID=MS.gene59456.t1.exon1;Parent=MS.gene59456.t1 |
| chr5.4 | CDS | 13452875 | 13453443 | 13452875 | ID=cds.MS.gene59456.t1;Parent=MS.gene59456.t1 |
| chr5.4 | exon | 13452189 | 13452720 | 13452189 | ID=MS.gene59456.t1.exon2;Parent=MS.gene59456.t1 |
| chr5.4 | CDS | 13452189 | 13452720 | 13452189 | ID=cds.MS.gene59456.t1;Parent=MS.gene59456.t1 |
| Gene Sequence |
| Protein sequence |