Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59456.t1 | XP_003612144.1 | 97 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 1.30E-203 | 718.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59456.t1 | Q9SNY3 | 85.5 | 344 | 49 | 1 | 23 | 366 | 16 | 358 | 1.2e-173 | 610.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59456.t1 | A0A072UDQ2 | 97.0 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 9.4e-204 | 718.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene59456 | MS.gene96326 | PPI |
MS.gene59456 | MS.gene20834 | PPI |
MS.gene20783 | MS.gene59456 | PPI |
MS.gene59456 | MS.gene073336 | PPI |
MS.gene59456 | MS.gene012318 | PPI |
MS.gene59456 | MS.gene07262 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59456.t1 | MTR_5g021770 | 96.995 | 366 | 11 | 0 | 1 | 366 | 1 | 366 | 0.0 | 742 |
MS.gene59456.t1 | MTR_5g021760 | 96.175 | 366 | 14 | 0 | 1 | 366 | 1 | 366 | 0.0 | 736 |
MS.gene59456.t1 | MTR_4g120030 | 24.633 | 341 | 193 | 13 | 23 | 344 | 110 | 405 | 8.83e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59456.t1 | AT5G66280 | 83.708 | 356 | 54 | 3 | 13 | 366 | 5 | 358 | 0.0 | 627 |
MS.gene59456.t1 | AT3G51160 | 80.992 | 363 | 67 | 2 | 4 | 366 | 10 | 370 | 0.0 | 625 |
MS.gene59456.t1 | AT2G47650 | 24.713 | 348 | 195 | 14 | 23 | 346 | 118 | 422 | 1.23e-11 | 66.2 |
MS.gene59456.t1 | AT2G47650 | 25.989 | 354 | 189 | 17 | 23 | 346 | 118 | 428 | 4.49e-11 | 64.3 |
Find 91 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGAAGTTGATAATCTTAA+AGG | 0.192272 | 5.4:-13452334 | MS.gene59456:CDS |
TGTTGGCGGTGTTGGTGTTT+TGG | 0.249858 | 5.4:+13453405 | None:intergenic |
CTTCAAAGTAAGTTGTTTCT+TGG | 0.276412 | 5.4:-13452562 | MS.gene59456:CDS |
TTTCCAACCAAGAACTTTCT+TGG | 0.301061 | 5.4:+13452297 | None:intergenic |
AGTAAAGCCAAGAAAGTTCT+TGG | 0.319296 | 5.4:-13452304 | MS.gene59456:CDS |
TCCGTCTTGGCCAGTGATTC+CGG | 0.339660 | 5.4:+13453336 | None:intergenic |
AGTTTGACGAACGGCGAATT+AGG | 0.352603 | 5.4:+13453266 | None:intergenic |
GCTGGATCTTCTGAAATGTT+TGG | 0.354742 | 5.4:-13452956 | MS.gene59456:CDS |
ACCTAAGTGCGTCGAGAGAT+TGG | 0.376609 | 5.4:-13452537 | MS.gene59456:CDS |
TGTTGAGGAGGAATTCTGTT+AGG | 0.384121 | 5.4:+13453308 | None:intergenic |
CCTAAGTGCGTCGAGAGATT+GGG | 0.389278 | 5.4:-13452536 | MS.gene59456:CDS |
AGAGGAAGCGTCAGAGAGAT+TGG | 0.392324 | 5.4:+13453168 | None:intergenic |
TTGGTTATGTTGGATTGAAT+TGG | 0.394470 | 5.4:-13452396 | MS.gene59456:CDS |
GTGAATTATCGTGAAGCATA+TGG | 0.397117 | 5.4:-13452691 | MS.gene59456:CDS |
ACAACATCGGCAGTGTAATC+AGG | 0.400097 | 5.4:+13453061 | None:intergenic |
GCGAGGTTGTAAACTTCGTC+AGG | 0.409532 | 5.4:+13453118 | None:intergenic |
GTACCAATGCGCAGCGACTT+TGG | 0.414772 | 5.4:+13452871 | None:intergenic |
CCGTTTGTTGTTGGCGGTGT+TGG | 0.418382 | 5.4:+13453397 | None:intergenic |
AGGAAGATTACTAGAGTTGT+TGG | 0.423133 | 5.4:-13452601 | MS.gene59456:CDS |
TGATATTGAGATGGCTAAGA+AGG | 0.440336 | 5.4:-13452230 | MS.gene59456:CDS |
TCGAGAGATTGGGGATTTGC+CGG | 0.445475 | 5.4:-13452526 | MS.gene59456:CDS |
ACGCTTCCTCTCTCCGTCGC+TGG | 0.449912 | 5.4:-13453156 | MS.gene59456:CDS |
CCAACACCGCCAACAACAAA+CGG | 0.451502 | 5.4:-13453397 | MS.gene59456:CDS |
GAGAAAGTCCTTGTTGATGC+TGG | 0.452535 | 5.4:-13452208 | MS.gene59456:CDS |
CGATCTCATATCGATGCAAC+AGG | 0.466501 | 5.4:-13453004 | MS.gene59456:CDS |
GCATTAATCACCGGAATCAC+TGG | 0.477232 | 5.4:-13453346 | MS.gene59456:CDS |
CCTCCAAAGTCGCTGCGCAT+TGG | 0.478635 | 5.4:-13452874 | MS.gene59456:intron |
CTGTTAGGTATGATCCGTCT+TGG | 0.482292 | 5.4:+13453323 | None:intergenic |
GTGGTGTCGCCGTTTGTTGT+TGG | 0.483145 | 5.4:+13453388 | None:intergenic |
AGTTCTTGGTTGGAAACCTA+AGG | 0.486640 | 5.4:-13452290 | MS.gene59456:CDS |
GAGGAGAGAATTTCGTTACA+AGG | 0.489476 | 5.4:-13452621 | MS.gene59456:CDS |
GATGTGGTTGATGCTACAAC+AGG | 0.492498 | 5.4:-13452488 | MS.gene59456:CDS |
CCCAATCTCTCGACGCACTT+AGG | 0.494377 | 5.4:+13452536 | None:intergenic |
TGAAGAGCTTGTTAGAATGA+TGG | 0.497175 | 5.4:-13452260 | MS.gene59456:CDS |
AAGCCAAGAAAGTTCTTGGT+TGG | 0.498900 | 5.4:-13452300 | MS.gene59456:CDS |
AGCTCTTCAAAACTAACCTT+AGG | 0.505928 | 5.4:+13452274 | None:intergenic |
CACATACGGTACTATCAAGC+TGG | 0.507207 | 5.4:-13452974 | MS.gene59456:CDS |
TTGTTGGAAGAATCAAGATC+GGG | 0.530932 | 5.4:-13452585 | MS.gene59456:CDS |
GCGACTTTGGAGGCGGCGTA+AGG | 0.533507 | 5.4:+13452884 | None:intergenic |
ATGCGCAGCGACTTTGGAGG+CGG | 0.536171 | 5.4:+13452877 | None:intergenic |
TTAAGATTATCAACTTCAGT+AGG | 0.538937 | 5.4:+13452337 | None:intergenic |
GTCGAGCCAGCGACGGAGAG+AGG | 0.549312 | 5.4:+13453150 | None:intergenic |
GTGTCGCCGTTTGTTGTTGG+CGG | 0.555514 | 5.4:+13453391 | None:intergenic |
AGAAAGTCCTTGTTGATGCT+GGG | 0.563986 | 5.4:-13452207 | MS.gene59456:CDS |
CGGAGTAGCCTTTGTTGAGG+AGG | 0.568302 | 5.4:+13453296 | None:intergenic |
CCAATGCGCAGCGACTTTGG+AGG | 0.569706 | 5.4:+13452874 | None:intergenic |
GTTGTTGGAAGAATCAAGAT+CGG | 0.578552 | 5.4:-13452586 | MS.gene59456:CDS |
CTAAGTGCGTCGAGAGATTG+GGG | 0.581879 | 5.4:-13452535 | MS.gene59456:CDS |
ACTGCCGATGTTGTTGCTAC+CGG | 0.584186 | 5.4:-13453052 | MS.gene59456:CDS |
TTCAAGAAGACGGAGCGCAC+CGG | 0.584604 | 5.4:+13453033 | None:intergenic |
GACTTTCCGCAGTGGAGGAG+TGG | 0.587386 | 5.4:+13453369 | None:intergenic |
ATCGGACGGCTTCAAGAAGA+CGG | 0.590667 | 5.4:+13453023 | None:intergenic |
ACCGGAATCACTGGCCAAGA+CGG | 0.594384 | 5.4:-13453337 | MS.gene59456:CDS |
ACGAACGGCGAATTAGGCCG+TGG | 0.595994 | 5.4:+13453272 | None:intergenic |
GGTTGATGCTACAACAGGAA+AGG | 0.599717 | 5.4:-13452483 | MS.gene59456:CDS |
CATCGCTTCAACATAATCAC+CGG | 0.605949 | 5.4:+13452507 | None:intergenic |
TGATGATTATGTTGTGGCGA+CGG | 0.608282 | 5.4:-13452458 | MS.gene59456:CDS |
GGACGGAGTAGCCTTTGTTG+AGG | 0.608416 | 5.4:+13453293 | None:intergenic |
GGCGACGGAGGATTCGCATA+CGG | 0.610465 | 5.4:-13452443 | MS.gene59456:CDS |
GTTGATGCTACAACAGGAAA+GGG | 0.610852 | 5.4:-13452482 | MS.gene59456:CDS |
CGGAAAGTCGCATTAATCAC+CGG | 0.613778 | 5.4:-13453355 | MS.gene59456:CDS |
ACGGCGAATTAGGCCGTGGA+CGG | 0.616647 | 5.4:+13453276 | None:intergenic |
GTGATTATGTTGAAGCGATG+TGG | 0.617088 | 5.4:-13452504 | MS.gene59456:CDS |
AATGCGACTTTCCGCAGTGG+AGG | 0.619549 | 5.4:+13453364 | None:intergenic |
ACAGAATTCCTCCTCAACAA+AGG | 0.619656 | 5.4:-13453304 | MS.gene59456:CDS |
GTGTGTTGAAGTTTGACGAA+CGG | 0.622272 | 5.4:+13453257 | None:intergenic |
CAACAGGAAGATCTCACATA+CGG | 0.624247 | 5.4:-13452988 | MS.gene59456:CDS |
AACAAAGGCTACTCCGTCCA+CGG | 0.626974 | 5.4:-13453289 | MS.gene59456:CDS |
GGATAGTGTCGAGCCAGCGA+CGG | 0.629653 | 5.4:+13453143 | None:intergenic |
CAATGTACCCAGCATCAACA+AGG | 0.631014 | 5.4:+13452200 | None:intergenic |
TGCATCGATATGAGATCGGA+CGG | 0.632798 | 5.4:+13453009 | None:intergenic |
GGTTGATAATGATATTGAGA+TGG | 0.632801 | 5.4:-13452239 | MS.gene59456:CDS |
CTGTTGCATCGATATGAGAT+CGG | 0.632916 | 5.4:+13453005 | None:intergenic |
TTATGTTGGATTGAATTGGA+AGG | 0.637434 | 5.4:-13452392 | MS.gene59456:CDS |
AACGAAGTCGTTTCAGACTG+CGG | 0.644350 | 5.4:+13452920 | None:intergenic |
TGAGCTTTGTGAGTGTCGTG+TGG | 0.658563 | 5.4:+13453208 | None:intergenic |
AACCGCGACGTGAGACTGTG+CGG | 0.665940 | 5.4:+13453096 | None:intergenic |
CGCCGCACAGTCTCACGTCG+CGG | 0.668155 | 5.4:-13453098 | MS.gene59456:CDS |
CGAGGTTGTAAACTTCGTCA+GGG | 0.672942 | 5.4:+13453119 | None:intergenic |
AATCATGAATCACCACGTAG+AGG | 0.676462 | 5.4:-13452640 | MS.gene59456:CDS |
GACGGAGGATTCGCATACGG+TGG | 0.678471 | 5.4:-13452440 | MS.gene59456:CDS |
TGATTATGTTGTGGCGACGG+AGG | 0.681152 | 5.4:-13452455 | MS.gene59456:CDS |
ACGAAATTCTCTCCTCTACG+TGG | 0.681620 | 5.4:+13452628 | None:intergenic |
ATTAATGCGACTTTCCGCAG+TGG | 0.684074 | 5.4:+13453361 | None:intergenic |
CGACGTGAGACTGTGCGGCG+AGG | 0.686982 | 5.4:+13453101 | None:intergenic |
GGTTGTAAACTTCGTCAGGG+AGG | 0.692198 | 5.4:+13453122 | None:intergenic |
GAGGCGGCGTAAGGAGACTG+AGG | 0.697451 | 5.4:+13452893 | None:intergenic |
CGCACCGGTAGCAACAACAT+CGG | 0.701461 | 5.4:+13453048 | None:intergenic |
AAGGGCTGATGATTATGTTG+TGG | 0.716548 | 5.4:-13452464 | MS.gene59456:CDS |
GAAGTCGTTTCAGACTGCGG+CGG | 0.732622 | 5.4:+13452923 | None:intergenic |
GCGACACCACTCCTCCACTG+CGG | 0.736296 | 5.4:-13453375 | MS.gene59456:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATGCATAAATTAATGAAA+TGG | - | chr5.4:13452796-13452815 | MS.gene59456:intron | 15.0% |
! | TAATGAAATGGAAATAGCAA+CGG | - | chr5.4:13452808-13452827 | MS.gene59456:intron | 25.0% |
! | TTAAGATTATCAACTTCAGT+AGG | + | chr5.4:13453276-13453295 | None:intergenic | 25.0% |
!! | TATGGAATTTTTGCTTGTAA+CGG | - | chr5.4:13452937-13452956 | MS.gene59456:CDS | 25.0% |
!!! | ACTGAAGTTGATAATCTTAA+AGG | - | chr5.4:13453276-13453295 | MS.gene59456:CDS | 25.0% |
TTATGTTGGATTGAATTGGA+AGG | - | chr5.4:13453218-13453237 | MS.gene59456:CDS | 30.0% | |
TTGGTTATGTTGGATTGAAT+TGG | - | chr5.4:13453214-13453233 | MS.gene59456:CDS | 30.0% | |
! | CTAACTTTTACATCTCGAAT+AGG | - | chr5.4:13452890-13452909 | MS.gene59456:CDS | 30.0% |
!! | CTTCAAAGTAAGTTGTTTCT+TGG | - | chr5.4:13453048-13453067 | MS.gene59456:CDS | 30.0% |
!! | GGTTGATAATGATATTGAGA+TGG | - | chr5.4:13453371-13453390 | MS.gene59456:CDS | 30.0% |
AGCTCTTCAAAACTAACCTT+AGG | + | chr5.4:13453339-13453358 | None:intergenic | 35.0% | |
AGGAAGATTACTAGAGTTGT+TGG | - | chr5.4:13453009-13453028 | MS.gene59456:CDS | 35.0% | |
AGTAAAGCCAAGAAAGTTCT+TGG | - | chr5.4:13453306-13453325 | MS.gene59456:CDS | 35.0% | |
GTGAATTATCGTGAAGCATA+TGG | - | chr5.4:13452919-13452938 | MS.gene59456:CDS | 35.0% | |
GTTGTTGGAAGAATCAAGAT+CGG | - | chr5.4:13453024-13453043 | MS.gene59456:CDS | 35.0% | |
TGATATTGAGATGGCTAAGA+AGG | - | chr5.4:13453380-13453399 | MS.gene59456:CDS | 35.0% | |
TTGTTGGAAGAATCAAGATC+GGG | - | chr5.4:13453025-13453044 | MS.gene59456:CDS | 35.0% | |
TTTCCAACCAAGAACTTTCT+TGG | + | chr5.4:13453316-13453335 | None:intergenic | 35.0% | |
!! | GAGTTTTTGGAAGTTGCTTT+TGG | - | chr5.4:13453195-13453214 | MS.gene59456:CDS | 35.0% |
!! | TGAAGAGCTTGTTAGAATGA+TGG | - | chr5.4:13453350-13453369 | MS.gene59456:CDS | 35.0% |
!!! | GAAGTTGCTTTTGGTTATGT+TGG | - | chr5.4:13453204-13453223 | MS.gene59456:CDS | 35.0% |
AAGCCAAGAAAGTTCTTGGT+TGG | - | chr5.4:13453310-13453329 | MS.gene59456:CDS | 40.0% | |
AAGGGCTGATGATTATGTTG+TGG | - | chr5.4:13453146-13453165 | MS.gene59456:CDS | 40.0% | |
AATCATGAATCACCACGTAG+AGG | - | chr5.4:13452970-13452989 | MS.gene59456:CDS | 40.0% | |
ACAGAATTCCTCCTCAACAA+AGG | - | chr5.4:13452306-13452325 | MS.gene59456:CDS | 40.0% | |
AGAAAGTCCTTGTTGATGCT+GGG | - | chr5.4:13453403-13453422 | MS.gene59456:CDS | 40.0% | |
AGTTCTTGGTTGGAAACCTA+AGG | - | chr5.4:13453320-13453339 | MS.gene59456:CDS | 40.0% | |
CAACAGGAAGATCTCACATA+CGG | - | chr5.4:13452622-13452641 | MS.gene59456:CDS | 40.0% | |
CATCGCTTCAACATAATCAC+CGG | + | chr5.4:13453106-13453125 | None:intergenic | 40.0% | |
GAGGAGAGAATTTCGTTACA+AGG | - | chr5.4:13452989-13453008 | MS.gene59456:CDS | 40.0% | |
GTGATTATGTTGAAGCGATG+TGG | - | chr5.4:13453106-13453125 | MS.gene59456:CDS | 40.0% | |
GTGTGTTGAAGTTTGACGAA+CGG | + | chr5.4:13452356-13452375 | None:intergenic | 40.0% | |
GTTGATGCTACAACAGGAAA+GGG | - | chr5.4:13453128-13453147 | MS.gene59456:CDS | 40.0% | |
TGATGATTATGTTGTGGCGA+CGG | - | chr5.4:13453152-13453171 | MS.gene59456:CDS | 40.0% | |
TGTTGAGGAGGAATTCTGTT+AGG | + | chr5.4:13452305-13452324 | None:intergenic | 40.0% | |
! | CTGTTGCATCGATATGAGAT+CGG | + | chr5.4:13452608-13452627 | None:intergenic | 40.0% |
!! | GCTGGATCTTCTGAAATGTT+TGG | - | chr5.4:13452654-13452673 | MS.gene59456:CDS | 40.0% |
AACGAAGTCGTTTCAGACTG+CGG | + | chr5.4:13452693-13452712 | None:intergenic | 45.0% | |
ACAACATCGGCAGTGTAATC+AGG | + | chr5.4:13452552-13452571 | None:intergenic | 45.0% | |
ACGAAATTCTCTCCTCTACG+TGG | + | chr5.4:13452985-13453004 | None:intergenic | 45.0% | |
AGTTTGACGAACGGCGAATT+AGG | + | chr5.4:13452347-13452366 | None:intergenic | 45.0% | |
ATTAATGCGACTTTCCGCAG+TGG | + | chr5.4:13452252-13452271 | None:intergenic | 45.0% | |
CAATGTACCCAGCATCAACA+AGG | + | chr5.4:13453413-13453432 | None:intergenic | 45.0% | |
CACATACGGTACTATCAAGC+TGG | - | chr5.4:13452636-13452655 | MS.gene59456:CDS | 45.0% | |
CGAGGTTGTAAACTTCGTCA+GGG | + | chr5.4:13452494-13452513 | None:intergenic | 45.0% | |
CGATCTCATATCGATGCAAC+AGG | - | chr5.4:13452606-13452625 | MS.gene59456:CDS | 45.0% | |
CGGAAAGTCGCATTAATCAC+CGG | - | chr5.4:13452255-13452274 | MS.gene59456:CDS | 45.0% | |
CTGTTAGGTATGATCCGTCT+TGG | + | chr5.4:13452290-13452309 | None:intergenic | 45.0% | |
GAGAAAGTCCTTGTTGATGC+TGG | - | chr5.4:13453402-13453421 | MS.gene59456:CDS | 45.0% | |
GCATTAATCACCGGAATCAC+TGG | - | chr5.4:13452264-13452283 | MS.gene59456:CDS | 45.0% | |
! | GATGTGGTTGATGCTACAAC+AGG | - | chr5.4:13453122-13453141 | MS.gene59456:CDS | 45.0% |
! | GCATACGGTGGAAGAGTTTT+TGG | - | chr5.4:13453182-13453201 | MS.gene59456:CDS | 45.0% |
! | GGTTGATGCTACAACAGGAA+AGG | - | chr5.4:13453127-13453146 | MS.gene59456:CDS | 45.0% |
! | TGCATCGATATGAGATCGGA+CGG | + | chr5.4:13452604-13452623 | None:intergenic | 45.0% |
AACAAAGGCTACTCCGTCCA+CGG | - | chr5.4:13452321-13452340 | MS.gene59456:CDS | 50.0% | |
ACCTAAGTGCGTCGAGAGAT+TGG | - | chr5.4:13453073-13453092 | MS.gene59456:CDS | 50.0% | |
ACTGCCGATGTTGTTGCTAC+CGG | - | chr5.4:13452558-13452577 | MS.gene59456:CDS | 50.0% | |
ATCGGACGGCTTCAAGAAGA+CGG | + | chr5.4:13452590-13452609 | None:intergenic | 50.0% | |
CCAACACCGCCAACAACAAA+CGG | - | chr5.4:13452213-13452232 | MS.gene59456:CDS | 50.0% | |
CCTAAGTGCGTCGAGAGATT+GGG | - | chr5.4:13453074-13453093 | MS.gene59456:CDS | 50.0% | |
CTAAGTGCGTCGAGAGATTG+GGG | - | chr5.4:13453075-13453094 | MS.gene59456:CDS | 50.0% | |
GCGAGGTTGTAAACTTCGTC+AGG | + | chr5.4:13452495-13452514 | None:intergenic | 50.0% | |
GGTTGTAAACTTCGTCAGGG+AGG | + | chr5.4:13452491-13452510 | None:intergenic | 50.0% | |
TCGAGAGATTGGGGATTTGC+CGG | - | chr5.4:13453084-13453103 | MS.gene59456:CDS | 50.0% | |
TGATTATGTTGTGGCGACGG+AGG | - | chr5.4:13453155-13453174 | MS.gene59456:CDS | 50.0% | |
! | TGAGCTTTGTGAGTGTCGTG+TGG | + | chr5.4:13452405-13452424 | None:intergenic | 50.0% |
!! | AGAGGAAGCGTCAGAGAGAT+TGG | + | chr5.4:13452445-13452464 | None:intergenic | 50.0% |
!!! | GTTGGCGGTGTTGGTGTTTT+GGG | + | chr5.4:13452207-13452226 | None:intergenic | 50.0% |
!!! | TGTTGGCGGTGTTGGTGTTT+TGG | + | chr5.4:13452208-13452227 | None:intergenic | 50.0% |
AATGCGACTTTCCGCAGTGG+AGG | + | chr5.4:13452249-13452268 | None:intergenic | 55.0% | |
ACCGGAATCACTGGCCAAGA+CGG | - | chr5.4:13452273-13452292 | MS.gene59456:CDS | 55.0% | |
CCCAATCTCTCGACGCACTT+AGG | + | chr5.4:13453077-13453096 | None:intergenic | 55.0% | |
CGGAGTAGCCTTTGTTGAGG+AGG | + | chr5.4:13452317-13452336 | None:intergenic | 55.0% | |
GAAGTCGTTTCAGACTGCGG+CGG | + | chr5.4:13452690-13452709 | None:intergenic | 55.0% | |
GGACGGAGTAGCCTTTGTTG+AGG | + | chr5.4:13452320-13452339 | None:intergenic | 55.0% | |
GTACCAATGCGCAGCGACTT+TGG | + | chr5.4:13452742-13452761 | None:intergenic | 55.0% | |
TCCGTCTTGGCCAGTGATTC+CGG | + | chr5.4:13452277-13452296 | None:intergenic | 55.0% | |
TTCAAGAAGACGGAGCGCAC+CGG | + | chr5.4:13452580-13452599 | None:intergenic | 55.0% | |
! | CGCACCGGTAGCAACAACAT+CGG | + | chr5.4:13452565-13452584 | None:intergenic | 55.0% |
!! | CCGTTTGTTGTTGGCGGTGT+TGG | + | chr5.4:13452216-13452235 | None:intergenic | 55.0% |
!! | GTGGTGTCGCCGTTTGTTGT+TGG | + | chr5.4:13452225-13452244 | None:intergenic | 55.0% |
!! | GTGTCGCCGTTTGTTGTTGG+CGG | + | chr5.4:13452222-13452241 | None:intergenic | 55.0% |
AACCGCGACGTGAGACTGTG+CGG | + | chr5.4:13452517-13452536 | None:intergenic | 60.0% | |
ACGAACGGCGAATTAGGCCG+TGG | + | chr5.4:13452341-13452360 | None:intergenic | 60.0% | |
ACGGCGAATTAGGCCGTGGA+CGG | + | chr5.4:13452337-13452356 | None:intergenic | 60.0% | |
CCAATGCGCAGCGACTTTGG+AGG | + | chr5.4:13452739-13452758 | None:intergenic | 60.0% | |
CCTCCAAAGTCGCTGCGCAT+TGG | - | chr5.4:13452736-13452755 | MS.gene59456:intron | 60.0% | |
GACGGAGGATTCGCATACGG+TGG | - | chr5.4:13453170-13453189 | MS.gene59456:CDS | 60.0% | |
GACTTTCCGCAGTGGAGGAG+TGG | + | chr5.4:13452244-13452263 | None:intergenic | 60.0% | |
GGCGACGGAGGATTCGCATA+CGG | - | chr5.4:13453167-13453186 | MS.gene59456:CDS | 60.0% | |
! | ATGCGCAGCGACTTTGGAGG+CGG | + | chr5.4:13452736-13452755 | None:intergenic | 60.0% |
! | GGATAGTGTCGAGCCAGCGA+CGG | + | chr5.4:13452470-13452489 | None:intergenic | 60.0% |
ACGCTTCCTCTCTCCGTCGC+TGG | - | chr5.4:13452454-13452473 | MS.gene59456:CDS | 65.0% | |
GAGGCGGCGTAAGGAGACTG+AGG | + | chr5.4:13452720-13452739 | None:intergenic | 65.0% | |
GCGACACCACTCCTCCACTG+CGG | - | chr5.4:13452235-13452254 | MS.gene59456:CDS | 65.0% | |
! | GCGACTTTGGAGGCGGCGTA+AGG | + | chr5.4:13452729-13452748 | None:intergenic | 65.0% |
CGACGTGAGACTGTGCGGCG+AGG | + | chr5.4:13452512-13452531 | None:intergenic | 70.0% | |
CGCCGCACAGTCTCACGTCG+CGG | - | chr5.4:13452512-13452531 | MS.gene59456:CDS | 70.0% | |
GTCGAGCCAGCGACGGAGAG+AGG | + | chr5.4:13452463-13452482 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 13452189 | 13453443 | 13452189 | ID=MS.gene59456 |
chr5.4 | mRNA | 13452189 | 13453443 | 13452189 | ID=MS.gene59456.t1;Parent=MS.gene59456 |
chr5.4 | exon | 13452875 | 13453443 | 13452875 | ID=MS.gene59456.t1.exon1;Parent=MS.gene59456.t1 |
chr5.4 | CDS | 13452875 | 13453443 | 13452875 | ID=cds.MS.gene59456.t1;Parent=MS.gene59456.t1 |
chr5.4 | exon | 13452189 | 13452720 | 13452189 | ID=MS.gene59456.t1.exon2;Parent=MS.gene59456.t1 |
chr5.4 | CDS | 13452189 | 13452720 | 13452189 | ID=cds.MS.gene59456.t1;Parent=MS.gene59456.t1 |
Gene Sequence |
Protein sequence |