Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59855.t1 | AES79079.2 | 93.3 | 343 | 23 | 0 | 1 | 343 | 8 | 350 | 2.70E-169 | 604.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59855.t1 | Q9FME2 | 38.6 | 352 | 185 | 6 | 1 | 343 | 1 | 330 | 1.3e-50 | 201.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59855.t1 | A0A072TZ72 | 93.3 | 343 | 23 | 0 | 1 | 343 | 1 | 343 | 2.0e-169 | 604.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene59855 | MS.gene033053 | PPI |
MS.gene59855 | MS.gene044455 | PPI |
MS.gene59855 | MS.gene063501 | PPI |
MS.gene044456 | MS.gene59855 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59855.t1 | MTR_7g055610 | 95.044 | 343 | 17 | 0 | 1 | 343 | 8 | 350 | 0.0 | 634 |
MS.gene59855.t1 | MTR_7g057520 | 95.044 | 343 | 17 | 0 | 1 | 343 | 1 | 343 | 0.0 | 632 |
MS.gene59855.t1 | MTR_4g109640 | 40.000 | 355 | 177 | 9 | 10 | 348 | 12 | 346 | 8.00e-69 | 221 |
MS.gene59855.t1 | MTR_4g109640 | 40.000 | 355 | 177 | 9 | 10 | 348 | 12 | 346 | 9.81e-69 | 220 |
MS.gene59855.t1 | MTR_7g013840 | 39.503 | 362 | 176 | 9 | 10 | 348 | 12 | 353 | 1.12e-68 | 223 |
MS.gene59855.t1 | MTR_7g013840 | 39.944 | 358 | 172 | 9 | 10 | 344 | 12 | 349 | 2.05e-68 | 223 |
MS.gene59855.t1 | MTR_4g109640 | 40.000 | 355 | 177 | 9 | 10 | 348 | 12 | 346 | 9.49e-68 | 220 |
MS.gene59855.t1 | MTR_4g083150 | 37.637 | 364 | 193 | 8 | 1 | 343 | 1 | 351 | 3.80e-63 | 209 |
MS.gene59855.t1 | MTR_7g098440 | 31.624 | 351 | 213 | 10 | 15 | 345 | 13 | 356 | 3.44e-36 | 137 |
MS.gene59855.t1 | MTR_1g045800 | 29.041 | 365 | 218 | 11 | 8 | 347 | 7 | 355 | 7.00e-32 | 124 |
MS.gene59855.t1 | MTR_8g080790 | 36.066 | 122 | 70 | 5 | 12 | 130 | 3 | 119 | 9.30e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59855.t1 | AT3G25150 | 46.409 | 362 | 149 | 9 | 7 | 343 | 8 | 349 | 6.83e-92 | 284 |
MS.gene59855.t1 | AT3G25150 | 46.409 | 362 | 149 | 9 | 7 | 343 | 107 | 448 | 2.92e-91 | 285 |
MS.gene59855.t1 | AT5G60980 | 37.330 | 367 | 179 | 8 | 1 | 348 | 1 | 335 | 3.25e-59 | 198 |
MS.gene59855.t1 | AT5G60980 | 37.330 | 367 | 179 | 8 | 1 | 348 | 1 | 335 | 3.25e-59 | 198 |
MS.gene59855.t1 | AT5G60980 | 36.883 | 385 | 184 | 9 | 1 | 358 | 1 | 353 | 6.20e-59 | 197 |
MS.gene59855.t1 | AT5G60980 | 36.883 | 385 | 184 | 9 | 1 | 358 | 1 | 353 | 6.20e-59 | 197 |
MS.gene59855.t1 | AT5G48650 | 37.288 | 354 | 182 | 10 | 12 | 339 | 13 | 352 | 2.37e-55 | 188 |
MS.gene59855.t1 | AT1G13730 | 31.467 | 375 | 203 | 9 | 1 | 361 | 1 | 335 | 3.52e-42 | 152 |
MS.gene59855.t1 | AT1G13730 | 31.467 | 375 | 203 | 9 | 1 | 361 | 1 | 335 | 3.52e-42 | 152 |
MS.gene59855.t1 | AT2G03640 | 33.429 | 347 | 186 | 11 | 3 | 341 | 2 | 311 | 1.34e-41 | 150 |
MS.gene59855.t1 | AT2G03640 | 34.393 | 346 | 183 | 11 | 3 | 341 | 2 | 310 | 6.81e-41 | 149 |
MS.gene59855.t1 | AT2G03640 | 34.393 | 346 | 183 | 11 | 3 | 341 | 2 | 310 | 6.81e-41 | 149 |
MS.gene59855.t1 | AT2G03640 | 34.393 | 346 | 183 | 11 | 3 | 341 | 2 | 310 | 6.81e-41 | 149 |
MS.gene59855.t1 | AT1G69250 | 32.692 | 364 | 209 | 13 | 1 | 361 | 1 | 331 | 6.82e-41 | 148 |
MS.gene59855.t1 | AT2G03640 | 34.393 | 346 | 183 | 11 | 3 | 341 | 2 | 310 | 9.54e-41 | 149 |
MS.gene59855.t1 | AT1G69250 | 33.237 | 346 | 199 | 12 | 1 | 343 | 1 | 317 | 1.00e-38 | 143 |
MS.gene59855.t1 | AT5G43960 | 29.330 | 358 | 219 | 11 | 10 | 343 | 6 | 353 | 1.38e-26 | 110 |
MS.gene59855.t1 | AT3G07250 | 28.895 | 353 | 179 | 12 | 10 | 339 | 3 | 306 | 3.47e-25 | 107 |
MS.gene59855.t1 | AT5G43960 | 29.885 | 261 | 153 | 8 | 106 | 343 | 41 | 294 | 1.83e-19 | 89.4 |
Find 90 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATACTAGAACCATTTGTTTC+TGG | 0.167296 | 8.3:-53799477 | None:intergenic |
TCTTCGGCACTTCTTCAATT+TGG | 0.175338 | 8.3:-53799099 | None:intergenic |
TCCGTAATGACAGCTGCTTC+TGG | 0.220668 | 8.3:+53799393 | MS.gene59855:CDS |
CTTCGGCACTTCTTCAATTT+GGG | 0.237490 | 8.3:-53799098 | None:intergenic |
GATAATATGTTCAAGAAGTT+TGG | 0.272836 | 8.3:+53799770 | MS.gene59855:CDS |
GGAGTCATTGTCTTGGTCAC+TGG | 0.284606 | 8.3:+53798582 | MS.gene59855:CDS |
GAGTCATTGTCTTGGTCACT+GGG | 0.328550 | 8.3:+53798583 | MS.gene59855:CDS |
TGGACACCGCCACTCTTGAT+AGG | 0.341350 | 8.3:-53799794 | None:intergenic |
GTTCTTGCTGAAATTCCTAA+TGG | 0.366769 | 8.3:+53799010 | MS.gene59855:CDS |
GTGGATGCACAAGAGTCTTT+TGG | 0.375158 | 8.3:+53798555 | MS.gene59855:CDS |
GCTGCTTTCTGTGAACCATT+AGG | 0.393225 | 8.3:-53799025 | None:intergenic |
ATACCTTTGCTGTCCTAACT+TGG | 0.400943 | 8.3:-53799814 | None:intergenic |
TTCACAGAAGGTAGCTGAAT+TGG | 0.401296 | 8.3:+53799072 | MS.gene59855:CDS |
CCGTAATGACAGCTGCTTCT+GGG | 0.406551 | 8.3:+53799394 | MS.gene59855:CDS |
AGGGCATGTGTAGCATTTCC+AGG | 0.424842 | 8.3:-53799743 | None:intergenic |
AGCATCATGTTACCATTCTC+AGG | 0.433770 | 8.3:-53798762 | None:intergenic |
TTCCTTGCTCCTCAAGAGAA+AGG | 0.437287 | 8.3:+53798654 | MS.gene59855:CDS |
TGACTGCTGAGGATGGTGAT+AGG | 0.438498 | 8.3:+53798915 | MS.gene59855:CDS |
CCCAGAAGCAGCTGTCATTA+CGG | 0.438517 | 8.3:-53799394 | None:intergenic |
AGTGTTGGATCCTCCTGTGC+TGG | 0.440145 | 8.3:+53798865 | MS.gene59855:intron |
AGAGTGGCGGTGTCCAAGTT+AGG | 0.440879 | 8.3:+53799801 | MS.gene59855:CDS |
CCGATGATACCATCTGGTTC+AGG | 0.443109 | 8.3:-53797904 | None:intergenic |
AGAAGTCTACAATCCAGAAA+AGG | 0.444292 | 8.3:+53798946 | MS.gene59855:CDS |
TTGGTCACTGGGTTTATGAT+AGG | 0.445866 | 8.3:+53798594 | MS.gene59855:CDS |
GAAGTCTACAATCCAGAAAA+GGG | 0.452472 | 8.3:+53798947 | MS.gene59855:CDS |
TACCAAGATGTCAGTAAGCT+TGG | 0.454912 | 8.3:+53797877 | MS.gene59855:CDS |
GGCTATTCAATTTATTTGAA+AGG | 0.459524 | 8.3:+53799716 | MS.gene59855:CDS |
GCTATTCAATTTATTTGAAA+GGG | 0.459913 | 8.3:+53799717 | MS.gene59855:CDS |
GGAATTTCAGCAAGAACCTC+AGG | 0.465142 | 8.3:-53799004 | None:intergenic |
ATGGAGGCATATGATTTCTT+CGG | 0.469501 | 8.3:-53799115 | None:intergenic |
ATTTATTTGAAAGGGCTGCC+TGG | 0.471179 | 8.3:+53799725 | MS.gene59855:CDS |
ACTCTTGTGCATCCACAGAT+AGG | 0.475539 | 8.3:-53798548 | None:intergenic |
GACCAAGCTTACTGACATCT+TGG | 0.477816 | 8.3:-53797879 | None:intergenic |
GGAGATCCAATGTCATGATC+AGG | 0.484436 | 8.3:-53798732 | None:intergenic |
TGTTGATGAAAATGAAATCA+AGG | 0.484974 | 8.3:+53798707 | MS.gene59855:CDS |
TGACAAGAAGATACTGTCAA+TGG | 0.484996 | 8.3:+53798500 | MS.gene59855:CDS |
ACAAAGTAGCCTTTCTCTTG+AGG | 0.490719 | 8.3:-53798663 | None:intergenic |
GCTACCTTCTGTGAATCATC+AGG | 0.503178 | 8.3:-53799064 | None:intergenic |
TGTCAAACAGCCACGGTACA+AGG | 0.504696 | 8.3:-53800408 | None:intergenic |
TCTCCTGCCTCTCCTGAGAA+TGG | 0.504733 | 8.3:+53798750 | MS.gene59855:CDS |
GGAACTTGTGTCTCCAGCAC+AGG | 0.507872 | 8.3:-53798878 | None:intergenic |
ATAGATATACATACAACATC+AGG | 0.509761 | 8.3:-53797530 | None:intergenic |
GCAGTCACAGATATTTGCTC+TGG | 0.513035 | 8.3:-53798899 | None:intergenic |
TTACCATTCTCAGGAGAGGC+AGG | 0.514038 | 8.3:-53798753 | None:intergenic |
TTCAGAGAATCAAGTTCCTC+CGG | 0.526348 | 8.3:+53797505 | MS.gene59855:CDS |
ACCATTTGTTTCTGGCACAC+TGG | 0.527488 | 8.3:-53799469 | None:intergenic |
AATGGTTCACAGAAAGCAGC+TGG | 0.533319 | 8.3:+53799028 | MS.gene59855:CDS |
GACAAGAAGATACTGTCAAT+GGG | 0.533669 | 8.3:+53798501 | MS.gene59855:CDS |
GCAAGTGTCTGTTGAAGAAG+AGG | 0.533771 | 8.3:+53798970 | MS.gene59855:CDS |
TCCAGTGTGCCAGAAACAAA+TGG | 0.535626 | 8.3:+53799468 | MS.gene59855:CDS |
GTAGCTTAAGGTAATGAAAG+AGG | 0.550794 | 8.3:+53799356 | MS.gene59855:intron |
TCTAGTATAAGTACTAATGA+AGG | 0.557933 | 8.3:+53799492 | MS.gene59855:CDS |
AAGGAACCTGATCATGACAT+TGG | 0.558690 | 8.3:+53798726 | MS.gene59855:CDS |
GACTGCTGAGGATGGTGATA+GGG | 0.564877 | 8.3:+53798916 | MS.gene59855:CDS |
AGTATAAGTACTAATGAAGG+TGG | 0.568379 | 8.3:+53799495 | MS.gene59855:CDS |
TTTGTTTCTGGCACACTGGA+TGG | 0.571504 | 8.3:-53799465 | None:intergenic |
AAAACCTATGCACATGCTCA+CGG | 0.572773 | 8.3:-53797855 | None:intergenic |
CCTGAACCAGATGGTATCAT+CGG | 0.573611 | 8.3:+53797904 | MS.gene59855:CDS |
AGCCTTTCTCTTGAGGAGCA+AGG | 0.578397 | 8.3:-53798656 | None:intergenic |
GGACACCGCCACTCTTGATA+GGG | 0.579408 | 8.3:-53799793 | None:intergenic |
AGAGGAAGCTCTTGTTCCTG+AGG | 0.589631 | 8.3:+53798988 | MS.gene59855:CDS |
CACTGGGTTTATGATAGGAA+AGG | 0.597377 | 8.3:+53798599 | MS.gene59855:CDS |
GAGTATAGCTCCTTGTACCG+TGG | 0.598585 | 8.3:+53800398 | MS.gene59855:CDS |
GTGATGCCGATGATACCATC+TGG | 0.601385 | 8.3:-53797910 | None:intergenic |
ACTTGTGTCTCCAGCACAGG+AGG | 0.604167 | 8.3:-53798875 | None:intergenic |
TCTTGAACATATTATCAACA+AGG | 0.608367 | 8.3:-53799763 | None:intergenic |
GCAGCTGTCATTACGGAGGA+CGG | 0.611765 | 8.3:-53799387 | None:intergenic |
ATACATACAACATCAGGTGC+CGG | 0.615319 | 8.3:-53797524 | None:intergenic |
GCAAATATCTGTGACTGCTG+AGG | 0.616027 | 8.3:+53798904 | MS.gene59855:CDS |
CTTGAACATATTATCAACAA+GGG | 0.626265 | 8.3:-53799762 | None:intergenic |
ATATCTGTGACTGCTGAGGA+TGG | 0.626749 | 8.3:+53798908 | MS.gene59855:CDS |
GAGAGAGCTCACGGCCATTG+TGG | 0.628746 | 8.3:-53797935 | None:intergenic |
TGTTCCTGATGATTCACAGA+AGG | 0.634860 | 8.3:+53799060 | MS.gene59855:CDS |
AAGTCTACAATCCAGAAAAG+GGG | 0.635113 | 8.3:+53798948 | MS.gene59855:CDS |
TAGTGCGGAGATCCTATCTG+TGG | 0.636226 | 8.3:+53798536 | MS.gene59855:CDS |
GGAAACAATCAAGAAACTGA+AGG | 0.637783 | 8.3:+53799516 | MS.gene59855:CDS |
TCTGGCACACTGGATGGTGA+AGG | 0.641996 | 8.3:-53799459 | None:intergenic |
CATGTTACCATTCTCAGGAG+AGG | 0.648742 | 8.3:-53798757 | None:intergenic |
GGGTTATAGTGAACTTAGTG+CGG | 0.649351 | 8.3:+53798521 | MS.gene59855:CDS |
AAAGCCGTGAGCATGTGCAT+AGG | 0.649804 | 8.3:+53797851 | MS.gene59855:CDS |
CTTGGTCGTCCTGAACCAGA+TGG | 0.650811 | 8.3:+53797895 | MS.gene59855:CDS |
AAGTTTGGCCCTATCAAGAG+TGG | 0.651104 | 8.3:+53799785 | MS.gene59855:CDS |
AGAACAGACACTTACAATGG+AGG | 0.661527 | 8.3:-53799131 | None:intergenic |
CATCGGCATCACAACCACAA+TGG | 0.675733 | 8.3:+53797921 | MS.gene59855:CDS |
TGTCCAAGTTAGGACAGCAA+AGG | 0.677658 | 8.3:+53799811 | MS.gene59855:CDS |
CTAGTGCTGTCAAACAGCCA+CGG | 0.679419 | 8.3:-53800415 | None:intergenic |
ATAGTAGTACTGTTCAACAA+AGG | 0.683995 | 8.3:-53797818 | None:intergenic |
TTTGGCCCTATCAAGAGTGG+CGG | 0.685024 | 8.3:+53799788 | MS.gene59855:CDS |
CATACAACATCAGGTGCCGG+AGG | 0.709159 | 8.3:-53797521 | None:intergenic |
AGAAGCAGCTGTCATTACGG+AGG | 0.717591 | 8.3:-53799391 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATATATA+TGG | - | chr8.3:53799570-53799551 | None:intergenic | 0.0% |
!! | TTAAAAAAAACAAAAAAACA+GGG | - | chr8.3:53799854-53799873 | None:intergenic | 10.0% |
!! | TTTAAAAAAAACAAAAAAAC+AGG | - | chr8.3:53799855-53799874 | None:intergenic | 10.0% |
!! | AACTTAGATTCTAATAAATA+TGG | + | chr8.3:53798369-53798388 | MS.gene59855:intron | 15.0% |
!! | ACAATGGAAATAAATTTAAA+AGG | - | chr8.3:53798324-53798343 | None:intergenic | 15.0% |
!!! | CTCATTATTAATTTGTTTTT+AGG | + | chr8.3:53800202-53800221 | MS.gene59855:intron | 15.0% |
!! | AAAAATATTCTTACTTGGAA+TGG | - | chr8.3:53800163-53800182 | None:intergenic | 20.0% |
!! | ACAGAAAAAATATTCTTACT+TGG | - | chr8.3:53800168-53800187 | None:intergenic | 20.0% |
!! | ATTGAAATAAATTCGTGAAA+AGG | - | chr8.3:53800332-53800351 | None:intergenic | 20.0% |
!! | GCTATTCAATTTATTTGAAA+GGG | + | chr8.3:53799717-53799736 | MS.gene59855:CDS | 20.0% |
!! | TAGAATCTAAGTTAACAAAT+GGG | - | chr8.3:53798362-53798381 | None:intergenic | 20.0% |
!! | TATTTATTGATGTGTTCAAT+TGG | + | chr8.3:53799674-53799693 | MS.gene59855:intron | 20.0% |
!! | TTAGAATCTAAGTTAACAAA+TGG | - | chr8.3:53798363-53798382 | None:intergenic | 20.0% |
! | AAAATGCAAACAAGAAACAA+GGG | - | chr8.3:53798082-53798101 | None:intergenic | 25.0% |
! | AAGATATTGTACAAACCAAT+TGG | - | chr8.3:53798135-53798154 | None:intergenic | 25.0% |
! | AATATCACTATGATAAACAC+AGG | - | chr8.3:53799658-53799677 | None:intergenic | 25.0% |
! | AGAACAAGTAACATTTACAA+TGG | - | chr8.3:53799205-53799224 | None:intergenic | 25.0% |
! | ATAGATATACATACAACATC+AGG | - | chr8.3:53797533-53797552 | None:intergenic | 25.0% |
! | ATATCACTATGATAAACACA+GGG | - | chr8.3:53799657-53799676 | None:intergenic | 25.0% |
! | CTTGAACATATTATCAACAA+GGG | - | chr8.3:53799765-53799784 | None:intergenic | 25.0% |
! | GATAATATGTTCAAGAAGTT+TGG | + | chr8.3:53799770-53799789 | MS.gene59855:CDS | 25.0% |
! | GGCTATTCAATTTATTTGAA+AGG | + | chr8.3:53799716-53799735 | MS.gene59855:CDS | 25.0% |
! | TAAAATGCAAACAAGAAACA+AGG | - | chr8.3:53798083-53798102 | None:intergenic | 25.0% |
! | TAACATTTACAATGGAAACT+CGG | - | chr8.3:53799197-53799216 | None:intergenic | 25.0% |
! | TCAATATTCATATCTCCAAT+TGG | + | chr8.3:53798117-53798136 | MS.gene59855:intron | 25.0% |
! | TCTAGTATAAGTACTAATGA+AGG | + | chr8.3:53799492-53799511 | MS.gene59855:CDS | 25.0% |
! | TCTTGAACATATTATCAACA+AGG | - | chr8.3:53799766-53799785 | None:intergenic | 25.0% |
! | TGTTGAGATAAATAGAAGAA+AGG | + | chr8.3:53800074-53800093 | MS.gene59855:intron | 25.0% |
! | TTCTTCTATTTATCTCAACA+TGG | - | chr8.3:53800074-53800093 | None:intergenic | 25.0% |
! | TTGTACAAAATAGTGTTTAG+CGG | + | chr8.3:53797671-53797690 | MS.gene59855:intron | 25.0% |
!! | ATGATACATGATTTGATTTC+TGG | + | chr8.3:53797742-53797761 | MS.gene59855:intron | 25.0% |
!! | TGTTGATGAAAATGAAATCA+AGG | + | chr8.3:53798707-53798726 | MS.gene59855:CDS | 25.0% |
!!! | AAATGCAATTTTGAGAGATT+TGG | + | chr8.3:53800280-53800299 | MS.gene59855:intron | 25.0% |
!!! | GTTTTTAATGTGATTGGTTT+AGG | + | chr8.3:53797786-53797805 | MS.gene59855:intron | 25.0% |
AAATGCAAACAAGAAACAAG+GGG | - | chr8.3:53798081-53798100 | None:intergenic | 30.0% | |
AACAAGCAACTTAAGTTAAC+AGG | - | chr8.3:53798829-53798848 | None:intergenic | 30.0% | |
AAGAAATTACACCAATGCAT+AGG | - | chr8.3:53798216-53798235 | None:intergenic | 30.0% | |
AATCGCTATTTGACAACATT+GGG | + | chr8.3:53797719-53797738 | MS.gene59855:intron | 30.0% | |
AGTATAAGTACTAATGAAGG+TGG | + | chr8.3:53799495-53799514 | MS.gene59855:CDS | 30.0% | |
ATACTAGAACCATTTGTTTC+TGG | - | chr8.3:53799480-53799499 | None:intergenic | 30.0% | |
ATAGTAGTACTGTTCAACAA+AGG | - | chr8.3:53797821-53797840 | None:intergenic | 30.0% | |
GCATTTAGATGATCATACAA+TGG | - | chr8.3:53798340-53798359 | None:intergenic | 30.0% | |
GTAATGATAAAACAGTTGAC+TGG | + | chr8.3:53797764-53797783 | MS.gene59855:intron | 30.0% | |
TAATCGCTATTTGACAACAT+TGG | + | chr8.3:53797718-53797737 | MS.gene59855:intron | 30.0% | |
TATAGAACAGACACTTACAA+TGG | - | chr8.3:53799137-53799156 | None:intergenic | 30.0% | |
TATTCTTACTTGGAATGGAT+TGG | - | chr8.3:53800158-53800177 | None:intergenic | 30.0% | |
TATTCTTGACTCTATTACAC+TGG | + | chr8.3:53799224-53799243 | MS.gene59855:intron | 30.0% | |
TTTCAAATAACGCCTATTTG+CGG | - | chr8.3:53797646-53797665 | None:intergenic | 30.0% | |
! | ATTCTTACTTGGAATGGATT+GGG | - | chr8.3:53800157-53800176 | None:intergenic | 30.0% |
! | CTTTATAGCTGTCTATGTTT+TGG | + | chr8.3:53798031-53798050 | MS.gene59855:intron | 30.0% |
!! | AGTTTGTTTAAGTTTTGCGA+TGG | + | chr8.3:53797605-53797624 | MS.gene59855:intron | 30.0% |
!! | TTAATGTGATTGGTTTAGGT+TGG | + | chr8.3:53797790-53797809 | MS.gene59855:intron | 30.0% |
!!! | TAACCATGTTTTAATACCCT+TGG | + | chr8.3:53798169-53798188 | MS.gene59855:intron | 30.0% |
!!! | TGACTGGTTTTTAATGTGAT+TGG | + | chr8.3:53797780-53797799 | MS.gene59855:intron | 30.0% |
!!! | TTAAGGCGTGGTTTTATTAA+GGG | + | chr8.3:53798784-53798803 | MS.gene59855:intron | 30.0% |
!!! | TTGTTATTTTCCTCTGTAAC+TGG | + | chr8.3:53799323-53799342 | MS.gene59855:intron | 30.0% |
AAGTCTACAATCCAGAAAAG+GGG | + | chr8.3:53798948-53798967 | MS.gene59855:CDS | 35.0% | |
AGAAGTCTACAATCCAGAAA+AGG | + | chr8.3:53798946-53798965 | MS.gene59855:CDS | 35.0% | |
AGTGAAACTACTAGGAAAAG+AGG | - | chr8.3:53799933-53799952 | None:intergenic | 35.0% | |
ATATCCAAAGCAATGTTCAG+AGG | - | chr8.3:53798251-53798270 | None:intergenic | 35.0% | |
GAAGTCTACAATCCAGAAAA+GGG | + | chr8.3:53798947-53798966 | MS.gene59855:CDS | 35.0% | |
GAATGGTAACATGATGCTTA+AGG | + | chr8.3:53798767-53798786 | MS.gene59855:intron | 35.0% | |
GACAAGAAGATACTGTCAAT+GGG | + | chr8.3:53798501-53798520 | MS.gene59855:CDS | 35.0% | |
GGAAACAATCAAGAAACTGA+AGG | + | chr8.3:53799516-53799535 | MS.gene59855:CDS | 35.0% | |
GTAGCTTAAGGTAATGAAAG+AGG | + | chr8.3:53799356-53799375 | MS.gene59855:intron | 35.0% | |
GTTCTTGCTGAAATTCCTAA+TGG | + | chr8.3:53799010-53799029 | MS.gene59855:CDS | 35.0% | |
TAACTCCCTTCCTAAAAGAA+TGG | - | chr8.3:53799977-53799996 | None:intergenic | 35.0% | |
TCATACAATGTTGTGAATCG+CGG | + | chr8.3:53797567-53797586 | MS.gene59855:intron | 35.0% | |
TGACAAGAAGATACTGTCAA+TGG | + | chr8.3:53798500-53798519 | MS.gene59855:CDS | 35.0% | |
! | AGAGATTTGGAGTCAAACAT+TGG | + | chr8.3:53800293-53800312 | MS.gene59855:intron | 35.0% |
! | ATGGAGGCATATGATTTCTT+CGG | - | chr8.3:53799118-53799137 | None:intergenic | 35.0% |
! | GAGATTTGGAGTCAAACATT+GGG | + | chr8.3:53800294-53800313 | MS.gene59855:intron | 35.0% |
! | GCTGCTAGCTAATAACTTTT+TGG | + | chr8.3:53799880-53799899 | MS.gene59855:intron | 35.0% |
! | TATGGATTGAGTGTTAGAAG+TGG | + | chr8.3:53798387-53798406 | MS.gene59855:intron | 35.0% |
! | TTATTTTCCTCTGTAACTGG+TGG | + | chr8.3:53799326-53799345 | MS.gene59855:intron | 35.0% |
!! | AAAGGCATCAGCAAGTAATT+AGG | - | chr8.3:53798306-53798325 | None:intergenic | 35.0% |
!! | AAGCATAGTGCCATTCTTTT+AGG | + | chr8.3:53799964-53799983 | MS.gene59855:intron | 35.0% |
!! | ATAGTGCCATTCTTTTAGGA+AGG | + | chr8.3:53799968-53799987 | MS.gene59855:intron | 35.0% |
!! | GATCCAAGGGTATTAAAACA+TGG | - | chr8.3:53798175-53798194 | None:intergenic | 35.0% |
!! | TAGTGCCATTCTTTTAGGAA+GGG | + | chr8.3:53799969-53799988 | MS.gene59855:intron | 35.0% |
!!! | CTTAAGGCGTGGTTTTATTA+AGG | + | chr8.3:53798783-53798802 | MS.gene59855:intron | 35.0% |
AAAACCTATGCACATGCTCA+CGG | - | chr8.3:53797858-53797877 | None:intergenic | 40.0% | |
AAGGAACCTGATCATGACAT+TGG | + | chr8.3:53798726-53798745 | MS.gene59855:CDS | 40.0% | |
ACAAAGTAGCCTTTCTCTTG+AGG | - | chr8.3:53798666-53798685 | None:intergenic | 40.0% | |
ACACCAATGCATAGGCATAT+GGG | - | chr8.3:53798208-53798227 | None:intergenic | 40.0% | |
ACGAGAGATCGTAAAGTAAG+AGG | + | chr8.3:53800103-53800122 | MS.gene59855:intron | 40.0% | |
AGAAAGAGCAAGAAAGGAAG+AGG | - | chr8.3:53799165-53799184 | None:intergenic | 40.0% | |
AGAACAGACACTTACAATGG+AGG | - | chr8.3:53799134-53799153 | None:intergenic | 40.0% | |
AGAAGATGAGTGAGTAGTGA+TGG | - | chr8.3:53800027-53800046 | None:intergenic | 40.0% | |
AGAATGGCACTATGCTTATG+AGG | - | chr8.3:53799961-53799980 | None:intergenic | 40.0% | |
AGCATCATGTTACCATTCTC+AGG | - | chr8.3:53798765-53798784 | None:intergenic | 40.0% | |
ATACATACAACATCAGGTGC+CGG | - | chr8.3:53797527-53797546 | None:intergenic | 40.0% | |
ATTTATTTGAAAGGGCTGCC+TGG | + | chr8.3:53799725-53799744 | MS.gene59855:CDS | 40.0% | |
CAAACCTCTGAACATTGCTT+TGG | + | chr8.3:53798244-53798263 | MS.gene59855:intron | 40.0% | |
CAATCAAGAAACTGAAGGTC+TGG | + | chr8.3:53799521-53799540 | MS.gene59855:intron | 40.0% | |
CACTGGGTTTATGATAGGAA+AGG | + | chr8.3:53798599-53798618 | MS.gene59855:CDS | 40.0% | |
CATACAATGTTGTGAATCGC+GGG | + | chr8.3:53797568-53797587 | MS.gene59855:intron | 40.0% | |
CATCAGCAAGTAATTAGGTG+GGG | - | chr8.3:53798301-53798320 | None:intergenic | 40.0% | |
CCTATTTCATTTCACCAAGC+AGG | + | chr8.3:53798473-53798492 | MS.gene59855:intron | 40.0% | |
CTTCGGCACTTCTTCAATTT+GGG | - | chr8.3:53799101-53799120 | None:intergenic | 40.0% | |
CTTCTTGTCAATTTCCTGCT+TGG | - | chr8.3:53798490-53798509 | None:intergenic | 40.0% | |
GAAAGAGCAAGAAAGGAAGA+GGG | - | chr8.3:53799164-53799183 | None:intergenic | 40.0% | |
GAGTCTAGAAAGAGCAAGAA+AGG | - | chr8.3:53799171-53799190 | None:intergenic | 40.0% | |
GCATCAGCAAGTAATTAGGT+GGG | - | chr8.3:53798302-53798321 | None:intergenic | 40.0% | |
GGGTTATAGTGAACTTAGTG+CGG | + | chr8.3:53798521-53798540 | MS.gene59855:CDS | 40.0% | |
TACACCAATGCATAGGCATA+TGG | - | chr8.3:53798209-53798228 | None:intergenic | 40.0% | |
TACCAAGATGTCAGTAAGCT+TGG | + | chr8.3:53797877-53797896 | MS.gene59855:CDS | 40.0% | |
TCTTCGGCACTTCTTCAATT+TGG | - | chr8.3:53799102-53799121 | None:intergenic | 40.0% | |
TGTTCCTGATGATTCACAGA+AGG | + | chr8.3:53799060-53799079 | MS.gene59855:CDS | 40.0% | |
TTCACAGAAGGTAGCTGAAT+TGG | + | chr8.3:53799072-53799091 | MS.gene59855:CDS | 40.0% | |
TTCAGAGAATCAAGTTCCTC+CGG | + | chr8.3:53797505-53797524 | MS.gene59855:CDS | 40.0% | |
TTGGTCACTGGGTTTATGAT+AGG | + | chr8.3:53798594-53798613 | MS.gene59855:CDS | 40.0% | |
! | ATACCTTTGCTGTCCTAACT+TGG | - | chr8.3:53799817-53799836 | None:intergenic | 40.0% |
! | CCTGCTTGGTGAAATGAAAT+AGG | - | chr8.3:53798476-53798495 | None:intergenic | 40.0% |
!! | GACAGCAAAGGTATTTCACT+TGG | + | chr8.3:53799823-53799842 | MS.gene59855:intron | 40.0% |
!! | TACTTGGAATGGATTGGGTT+GGG | - | chr8.3:53800152-53800171 | None:intergenic | 40.0% |
!! | TCTTTTAGGAAGGGAGTTAG+TGG | + | chr8.3:53799978-53799997 | MS.gene59855:intron | 40.0% |
!! | TTACTTGGAATGGATTGGGT+TGG | - | chr8.3:53800153-53800172 | None:intergenic | 40.0% |
AACAGATCCACCAGTTACAG+AGG | - | chr8.3:53799336-53799355 | None:intergenic | 45.0% | |
AAGTTTGGCCCTATCAAGAG+TGG | + | chr8.3:53799785-53799804 | MS.gene59855:CDS | 45.0% | |
AATAGCCCTCAGCTGTCAAA+AGG | - | chr8.3:53799703-53799722 | None:intergenic | 45.0% | |
AATGGTTCACAGAAAGCAGC+TGG | + | chr8.3:53799028-53799047 | MS.gene59855:CDS | 45.0% | |
ACACCCATATGCCTATGCAT+TGG | + | chr8.3:53798202-53798221 | MS.gene59855:intron | 45.0% | |
ACTCTTGTGCATCCACAGAT+AGG | - | chr8.3:53798551-53798570 | None:intergenic | 45.0% | |
AGGTGGGAAGTGAAACTACT+AGG | - | chr8.3:53799941-53799960 | None:intergenic | 45.0% | |
AGTGCTATAGTGCCGCAAAT+AGG | + | chr8.3:53797631-53797650 | MS.gene59855:intron | 45.0% | |
ATATCTGTGACTGCTGAGGA+TGG | + | chr8.3:53798908-53798927 | MS.gene59855:CDS | 45.0% | |
ATGGCACTATGCTTATGAGG+TGG | - | chr8.3:53799958-53799977 | None:intergenic | 45.0% | |
CATGTTACCATTCTCAGGAG+AGG | - | chr8.3:53798760-53798779 | None:intergenic | 45.0% | |
CCAACACTGAAAGAAGGTTG+AGG | - | chr8.3:53798853-53798872 | None:intergenic | 45.0% | |
CCTCAACCTTCTTTCAGTGT+TGG | + | chr8.3:53798850-53798869 | MS.gene59855:intron | 45.0% | |
CCTGAACCAGATGGTATCAT+CGG | + | chr8.3:53797904-53797923 | MS.gene59855:CDS | 45.0% | |
GACCAAGCTTACTGACATCT+TGG | - | chr8.3:53797882-53797901 | None:intergenic | 45.0% | |
GAGGATCCAACACTGAAAGA+AGG | - | chr8.3:53798859-53798878 | None:intergenic | 45.0% | |
GAGTCATTGTCTTGGTCACT+GGG | + | chr8.3:53798583-53798602 | MS.gene59855:CDS | 45.0% | |
GCAAATATCTGTGACTGCTG+AGG | + | chr8.3:53798904-53798923 | MS.gene59855:CDS | 45.0% | |
GCAAGTGTCTGTTGAAGAAG+AGG | + | chr8.3:53798970-53798989 | MS.gene59855:CDS | 45.0% | |
GCAGTCACAGATATTTGCTC+TGG | - | chr8.3:53798902-53798921 | None:intergenic | 45.0% | |
GCTACCTTCTGTGAATCATC+AGG | - | chr8.3:53799067-53799086 | None:intergenic | 45.0% | |
GGAATTTCAGCAAGAACCTC+AGG | - | chr8.3:53799007-53799026 | None:intergenic | 45.0% | |
GGAGATCCAATGTCATGATC+AGG | - | chr8.3:53798735-53798754 | None:intergenic | 45.0% | |
GGCATCAGCAAGTAATTAGG+TGG | - | chr8.3:53798303-53798322 | None:intergenic | 45.0% | |
GGGTGTAGAGTAAGATCCAA+GGG | - | chr8.3:53798188-53798207 | None:intergenic | 45.0% | |
GGTGCAGTTTCTCTCTAAGT+GGG | - | chr8.3:53800053-53800072 | None:intergenic | 45.0% | |
GGTGGATCTGTTGTAGCTTA+AGG | + | chr8.3:53799344-53799363 | MS.gene59855:intron | 45.0% | |
GTAACATGATGCTTAAGGCG+TGG | + | chr8.3:53798772-53798791 | MS.gene59855:intron | 45.0% | |
GTTGTCCTCTCATACCTCAT+GGG | + | chr8.3:53798053-53798072 | MS.gene59855:intron | 45.0% | |
TCCAGTGTGCCAGAAACAAA+TGG | + | chr8.3:53799468-53799487 | MS.gene59855:CDS | 45.0% | |
TGGCACTATGCTTATGAGGT+GGG | - | chr8.3:53799957-53799976 | None:intergenic | 45.0% | |
TGGGTGTAGAGTAAGATCCA+AGG | - | chr8.3:53798189-53798208 | None:intergenic | 45.0% | |
TGGTGCAGTTTCTCTCTAAG+TGG | - | chr8.3:53800054-53800073 | None:intergenic | 45.0% | |
TGTCCAAGTTAGGACAGCAA+AGG | + | chr8.3:53799811-53799830 | MS.gene59855:CDS | 45.0% | |
TTCCTTGCTCCTCAAGAGAA+AGG | + | chr8.3:53798654-53798673 | MS.gene59855:CDS | 45.0% | |
! | ATGCACAAGAGTCTTTTGGC+GGG | + | chr8.3:53798559-53798578 | MS.gene59855:CDS | 45.0% |
! | ATGTTGTGAATCGCGGGTTA+TGG | + | chr8.3:53797574-53797593 | MS.gene59855:intron | 45.0% |
! | GATGCACAAGAGTCTTTTGG+CGG | + | chr8.3:53798558-53798577 | MS.gene59855:CDS | 45.0% |
! | GCTGCTTTCTGTGAACCATT+AGG | - | chr8.3:53799028-53799047 | None:intergenic | 45.0% |
! | GTGGATGCACAAGAGTCTTT+TGG | + | chr8.3:53798555-53798574 | MS.gene59855:CDS | 45.0% |
!! | ACCATTTGTTTCTGGCACAC+TGG | - | chr8.3:53799472-53799491 | None:intergenic | 45.0% |
!! | TTTGTTTCTGGCACACTGGA+TGG | - | chr8.3:53799468-53799487 | None:intergenic | 45.0% |
AAAGCCGTGAGCATGTGCAT+AGG | + | chr8.3:53797851-53797870 | MS.gene59855:CDS | 50.0% | |
AGAAGCAGCTGTCATTACGG+AGG | - | chr8.3:53799394-53799413 | None:intergenic | 50.0% | |
AGAGAGAGAGAGAGAGCTCA+CGG | - | chr8.3:53797947-53797966 | None:intergenic | 50.0% | |
AGAGGAAGCTCTTGTTCCTG+AGG | + | chr8.3:53798988-53799007 | MS.gene59855:CDS | 50.0% | |
AGCCTTTCTCTTGAGGAGCA+AGG | - | chr8.3:53798659-53798678 | None:intergenic | 50.0% | |
AGGGCATGTGTAGCATTTCC+AGG | - | chr8.3:53799746-53799765 | None:intergenic | 50.0% | |
CATCGGCATCACAACCACAA+TGG | + | chr8.3:53797921-53797940 | MS.gene59855:CDS | 50.0% | |
CCCAGAAGCAGCTGTCATTA+CGG | - | chr8.3:53799397-53799416 | None:intergenic | 50.0% | |
CCGTAATGACAGCTGCTTCT+GGG | + | chr8.3:53799394-53799413 | MS.gene59855:CDS | 50.0% | |
CTAGTGCTGTCAAACAGCCA+CGG | - | chr8.3:53800418-53800437 | None:intergenic | 50.0% | |
GACTGCTGAGGATGGTGATA+GGG | + | chr8.3:53798916-53798935 | MS.gene59855:CDS | 50.0% | |
GAGTATAGCTCCTTGTACCG+TGG | + | chr8.3:53800398-53800417 | MS.gene59855:CDS | 50.0% | |
GCAAGTAATTAGGTGGGGTC+TGG | - | chr8.3:53798296-53798315 | None:intergenic | 50.0% | |
GGAGTCATTGTCTTGGTCAC+TGG | + | chr8.3:53798582-53798601 | MS.gene59855:CDS | 50.0% | |
GGTTGTCCTCTCATACCTCA+TGG | + | chr8.3:53798052-53798071 | MS.gene59855:intron | 50.0% | |
GTGATGCCGATGATACCATC+TGG | - | chr8.3:53797913-53797932 | None:intergenic | 50.0% | |
TAGTGCGGAGATCCTATCTG+TGG | + | chr8.3:53798536-53798555 | MS.gene59855:CDS | 50.0% | |
TCCGTAATGACAGCTGCTTC+TGG | + | chr8.3:53799393-53799412 | MS.gene59855:CDS | 50.0% | |
TGACTGCTGAGGATGGTGAT+AGG | + | chr8.3:53798915-53798934 | MS.gene59855:CDS | 50.0% | |
TGTCAAACAGCCACGGTACA+AGG | - | chr8.3:53800411-53800430 | None:intergenic | 50.0% | |
TTACCATTCTCAGGAGAGGC+AGG | - | chr8.3:53798756-53798775 | None:intergenic | 50.0% | |
TTTGGCCCTATCAAGAGTGG+CGG | + | chr8.3:53799788-53799807 | MS.gene59855:CDS | 50.0% | |
! | ACAGACACTTGCCCCTTTTC+TGG | - | chr8.3:53798962-53798981 | None:intergenic | 50.0% |
! | CCGATGATACCATCTGGTTC+AGG | - | chr8.3:53797907-53797926 | None:intergenic | 50.0% |
! | GGTTGCCTTTTGACAGCTGA+GGG | + | chr8.3:53799695-53799714 | MS.gene59855:intron | 50.0% |
! | TGCACAAGAGTCTTTTGGCG+GGG | + | chr8.3:53798560-53798579 | MS.gene59855:CDS | 50.0% |
! | TGGTTGCCTTTTGACAGCTG+AGG | + | chr8.3:53799694-53799713 | MS.gene59855:intron | 50.0% |
!! | AGAAACAAGGGGTACCCATG+AGG | - | chr8.3:53798070-53798089 | None:intergenic | 50.0% |
ACTTGTGTCTCCAGCACAGG+AGG | - | chr8.3:53798878-53798897 | None:intergenic | 55.0% | |
AGAGTGGCGGTGTCCAAGTT+AGG | + | chr8.3:53799801-53799820 | MS.gene59855:CDS | 55.0% | |
CTTGGTCGTCCTGAACCAGA+TGG | + | chr8.3:53797895-53797914 | MS.gene59855:CDS | 55.0% | |
GCAGCTGTCATTACGGAGGA+CGG | - | chr8.3:53799390-53799409 | None:intergenic | 55.0% | |
GGAACTTGTGTCTCCAGCAC+AGG | - | chr8.3:53798881-53798900 | None:intergenic | 55.0% | |
GGACACCGCCACTCTTGATA+GGG | - | chr8.3:53799796-53799815 | None:intergenic | 55.0% | |
GGGTACCCATGAGGTATGAG+AGG | - | chr8.3:53798061-53798080 | None:intergenic | 55.0% | |
TCTCCTGCCTCTCCTGAGAA+TGG | + | chr8.3:53798750-53798769 | MS.gene59855:CDS | 55.0% | |
TCTGGCACACTGGATGGTGA+AGG | - | chr8.3:53799462-53799481 | None:intergenic | 55.0% | |
TGGACACCGCCACTCTTGAT+AGG | - | chr8.3:53799797-53799816 | None:intergenic | 55.0% | |
! | AGTGTTGGATCCTCCTGTGC+TGG | + | chr8.3:53798865-53798884 | MS.gene59855:intron | 55.0% |
! | GCACAAGAGTCTTTTGGCGG+GGG | + | chr8.3:53798561-53798580 | MS.gene59855:CDS | 55.0% |
!! | CATACAACATCAGGTGCCGG+AGG | - | chr8.3:53797524-53797543 | None:intergenic | 55.0% |
GAGAGAGCTCACGGCCATTG+TGG | - | chr8.3:53797938-53797957 | None:intergenic | 60.0% | |
TGGCGGGGGAGTCATTGTCT+TGG | + | chr8.3:53798575-53798594 | MS.gene59855:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 53797497 | 53800448 | 53797497 | ID=MS.gene59855 |
chr8.3 | mRNA | 53797497 | 53800448 | 53797497 | ID=MS.gene59855.t1;Parent=MS.gene59855 |
chr8.3 | exon | 53797497 | 53797538 | 53797497 | ID=MS.gene59855.t1.exon1;Parent=MS.gene59855.t1 |
chr8.3 | CDS | 53797497 | 53797538 | 53797497 | ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1 |
chr8.3 | exon | 53797808 | 53797945 | 53797808 | ID=MS.gene59855.t1.exon2;Parent=MS.gene59855.t1 |
chr8.3 | CDS | 53797808 | 53797945 | 53797808 | ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1 |
chr8.3 | exon | 53798495 | 53798771 | 53798495 | ID=MS.gene59855.t1.exon3;Parent=MS.gene59855.t1 |
chr8.3 | CDS | 53798495 | 53798771 | 53798495 | ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1 |
chr8.3 | exon | 53798867 | 53799138 | 53798867 | ID=MS.gene59855.t1.exon4;Parent=MS.gene59855.t1 |
chr8.3 | CDS | 53798867 | 53799138 | 53798867 | ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1 |
chr8.3 | exon | 53799360 | 53799537 | 53799360 | ID=MS.gene59855.t1.exon5;Parent=MS.gene59855.t1 |
chr8.3 | CDS | 53799360 | 53799537 | 53799360 | ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1 |
chr8.3 | exon | 53799711 | 53799832 | 53799711 | ID=MS.gene59855.t1.exon6;Parent=MS.gene59855.t1 |
chr8.3 | CDS | 53799711 | 53799832 | 53799711 | ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1 |
chr8.3 | exon | 53800389 | 53800448 | 53800389 | ID=MS.gene59855.t1.exon7;Parent=MS.gene59855.t1 |
chr8.3 | CDS | 53800389 | 53800448 | 53800389 | ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1 |
Gene Sequence |
Protein sequence |