AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59855


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59855.t1 MTR_7g055610 95.044 343 17 0 1 343 8 350 0.0 634
MS.gene59855.t1 MTR_7g057520 95.044 343 17 0 1 343 1 343 0.0 632
MS.gene59855.t1 MTR_4g109640 40.000 355 177 9 10 348 12 346 8.00e-69 221
MS.gene59855.t1 MTR_4g109640 40.000 355 177 9 10 348 12 346 9.81e-69 220
MS.gene59855.t1 MTR_7g013840 39.503 362 176 9 10 348 12 353 1.12e-68 223
MS.gene59855.t1 MTR_7g013840 39.944 358 172 9 10 344 12 349 2.05e-68 223
MS.gene59855.t1 MTR_4g109640 40.000 355 177 9 10 348 12 346 9.49e-68 220
MS.gene59855.t1 MTR_4g083150 37.637 364 193 8 1 343 1 351 3.80e-63 209
MS.gene59855.t1 MTR_7g098440 31.624 351 213 10 15 345 13 356 3.44e-36 137
MS.gene59855.t1 MTR_1g045800 29.041 365 218 11 8 347 7 355 7.00e-32 124
MS.gene59855.t1 MTR_8g080790 36.066 122 70 5 12 130 3 119 9.30e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59855.t1 AT3G25150 46.409 362 149 9 7 343 8 349 6.83e-92 284
MS.gene59855.t1 AT3G25150 46.409 362 149 9 7 343 107 448 2.92e-91 285
MS.gene59855.t1 AT5G60980 37.330 367 179 8 1 348 1 335 3.25e-59 198
MS.gene59855.t1 AT5G60980 37.330 367 179 8 1 348 1 335 3.25e-59 198
MS.gene59855.t1 AT5G60980 36.883 385 184 9 1 358 1 353 6.20e-59 197
MS.gene59855.t1 AT5G60980 36.883 385 184 9 1 358 1 353 6.20e-59 197
MS.gene59855.t1 AT5G48650 37.288 354 182 10 12 339 13 352 2.37e-55 188
MS.gene59855.t1 AT1G13730 31.467 375 203 9 1 361 1 335 3.52e-42 152
MS.gene59855.t1 AT1G13730 31.467 375 203 9 1 361 1 335 3.52e-42 152
MS.gene59855.t1 AT2G03640 33.429 347 186 11 3 341 2 311 1.34e-41 150
MS.gene59855.t1 AT2G03640 34.393 346 183 11 3 341 2 310 6.81e-41 149
MS.gene59855.t1 AT2G03640 34.393 346 183 11 3 341 2 310 6.81e-41 149
MS.gene59855.t1 AT2G03640 34.393 346 183 11 3 341 2 310 6.81e-41 149
MS.gene59855.t1 AT1G69250 32.692 364 209 13 1 361 1 331 6.82e-41 148
MS.gene59855.t1 AT2G03640 34.393 346 183 11 3 341 2 310 9.54e-41 149
MS.gene59855.t1 AT1G69250 33.237 346 199 12 1 343 1 317 1.00e-38 143
MS.gene59855.t1 AT5G43960 29.330 358 219 11 10 343 6 353 1.38e-26 110
MS.gene59855.t1 AT3G07250 28.895 353 179 12 10 339 3 306 3.47e-25 107
MS.gene59855.t1 AT5G43960 29.885 261 153 8 106 343 41 294 1.83e-19 89.4

Find 90 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTAGAACCATTTGTTTC+TGG 0.167296 8.3:-53799477 None:intergenic
TCTTCGGCACTTCTTCAATT+TGG 0.175338 8.3:-53799099 None:intergenic
TCCGTAATGACAGCTGCTTC+TGG 0.220668 8.3:+53799393 MS.gene59855:CDS
CTTCGGCACTTCTTCAATTT+GGG 0.237490 8.3:-53799098 None:intergenic
GATAATATGTTCAAGAAGTT+TGG 0.272836 8.3:+53799770 MS.gene59855:CDS
GGAGTCATTGTCTTGGTCAC+TGG 0.284606 8.3:+53798582 MS.gene59855:CDS
GAGTCATTGTCTTGGTCACT+GGG 0.328550 8.3:+53798583 MS.gene59855:CDS
TGGACACCGCCACTCTTGAT+AGG 0.341350 8.3:-53799794 None:intergenic
GTTCTTGCTGAAATTCCTAA+TGG 0.366769 8.3:+53799010 MS.gene59855:CDS
GTGGATGCACAAGAGTCTTT+TGG 0.375158 8.3:+53798555 MS.gene59855:CDS
GCTGCTTTCTGTGAACCATT+AGG 0.393225 8.3:-53799025 None:intergenic
ATACCTTTGCTGTCCTAACT+TGG 0.400943 8.3:-53799814 None:intergenic
TTCACAGAAGGTAGCTGAAT+TGG 0.401296 8.3:+53799072 MS.gene59855:CDS
CCGTAATGACAGCTGCTTCT+GGG 0.406551 8.3:+53799394 MS.gene59855:CDS
AGGGCATGTGTAGCATTTCC+AGG 0.424842 8.3:-53799743 None:intergenic
AGCATCATGTTACCATTCTC+AGG 0.433770 8.3:-53798762 None:intergenic
TTCCTTGCTCCTCAAGAGAA+AGG 0.437287 8.3:+53798654 MS.gene59855:CDS
TGACTGCTGAGGATGGTGAT+AGG 0.438498 8.3:+53798915 MS.gene59855:CDS
CCCAGAAGCAGCTGTCATTA+CGG 0.438517 8.3:-53799394 None:intergenic
AGTGTTGGATCCTCCTGTGC+TGG 0.440145 8.3:+53798865 MS.gene59855:intron
AGAGTGGCGGTGTCCAAGTT+AGG 0.440879 8.3:+53799801 MS.gene59855:CDS
CCGATGATACCATCTGGTTC+AGG 0.443109 8.3:-53797904 None:intergenic
AGAAGTCTACAATCCAGAAA+AGG 0.444292 8.3:+53798946 MS.gene59855:CDS
TTGGTCACTGGGTTTATGAT+AGG 0.445866 8.3:+53798594 MS.gene59855:CDS
GAAGTCTACAATCCAGAAAA+GGG 0.452472 8.3:+53798947 MS.gene59855:CDS
TACCAAGATGTCAGTAAGCT+TGG 0.454912 8.3:+53797877 MS.gene59855:CDS
GGCTATTCAATTTATTTGAA+AGG 0.459524 8.3:+53799716 MS.gene59855:CDS
GCTATTCAATTTATTTGAAA+GGG 0.459913 8.3:+53799717 MS.gene59855:CDS
GGAATTTCAGCAAGAACCTC+AGG 0.465142 8.3:-53799004 None:intergenic
ATGGAGGCATATGATTTCTT+CGG 0.469501 8.3:-53799115 None:intergenic
ATTTATTTGAAAGGGCTGCC+TGG 0.471179 8.3:+53799725 MS.gene59855:CDS
ACTCTTGTGCATCCACAGAT+AGG 0.475539 8.3:-53798548 None:intergenic
GACCAAGCTTACTGACATCT+TGG 0.477816 8.3:-53797879 None:intergenic
GGAGATCCAATGTCATGATC+AGG 0.484436 8.3:-53798732 None:intergenic
TGTTGATGAAAATGAAATCA+AGG 0.484974 8.3:+53798707 MS.gene59855:CDS
TGACAAGAAGATACTGTCAA+TGG 0.484996 8.3:+53798500 MS.gene59855:CDS
ACAAAGTAGCCTTTCTCTTG+AGG 0.490719 8.3:-53798663 None:intergenic
GCTACCTTCTGTGAATCATC+AGG 0.503178 8.3:-53799064 None:intergenic
TGTCAAACAGCCACGGTACA+AGG 0.504696 8.3:-53800408 None:intergenic
TCTCCTGCCTCTCCTGAGAA+TGG 0.504733 8.3:+53798750 MS.gene59855:CDS
GGAACTTGTGTCTCCAGCAC+AGG 0.507872 8.3:-53798878 None:intergenic
ATAGATATACATACAACATC+AGG 0.509761 8.3:-53797530 None:intergenic
GCAGTCACAGATATTTGCTC+TGG 0.513035 8.3:-53798899 None:intergenic
TTACCATTCTCAGGAGAGGC+AGG 0.514038 8.3:-53798753 None:intergenic
TTCAGAGAATCAAGTTCCTC+CGG 0.526348 8.3:+53797505 MS.gene59855:CDS
ACCATTTGTTTCTGGCACAC+TGG 0.527488 8.3:-53799469 None:intergenic
AATGGTTCACAGAAAGCAGC+TGG 0.533319 8.3:+53799028 MS.gene59855:CDS
GACAAGAAGATACTGTCAAT+GGG 0.533669 8.3:+53798501 MS.gene59855:CDS
GCAAGTGTCTGTTGAAGAAG+AGG 0.533771 8.3:+53798970 MS.gene59855:CDS
TCCAGTGTGCCAGAAACAAA+TGG 0.535626 8.3:+53799468 MS.gene59855:CDS
GTAGCTTAAGGTAATGAAAG+AGG 0.550794 8.3:+53799356 MS.gene59855:intron
TCTAGTATAAGTACTAATGA+AGG 0.557933 8.3:+53799492 MS.gene59855:CDS
AAGGAACCTGATCATGACAT+TGG 0.558690 8.3:+53798726 MS.gene59855:CDS
GACTGCTGAGGATGGTGATA+GGG 0.564877 8.3:+53798916 MS.gene59855:CDS
AGTATAAGTACTAATGAAGG+TGG 0.568379 8.3:+53799495 MS.gene59855:CDS
TTTGTTTCTGGCACACTGGA+TGG 0.571504 8.3:-53799465 None:intergenic
AAAACCTATGCACATGCTCA+CGG 0.572773 8.3:-53797855 None:intergenic
CCTGAACCAGATGGTATCAT+CGG 0.573611 8.3:+53797904 MS.gene59855:CDS
AGCCTTTCTCTTGAGGAGCA+AGG 0.578397 8.3:-53798656 None:intergenic
GGACACCGCCACTCTTGATA+GGG 0.579408 8.3:-53799793 None:intergenic
AGAGGAAGCTCTTGTTCCTG+AGG 0.589631 8.3:+53798988 MS.gene59855:CDS
CACTGGGTTTATGATAGGAA+AGG 0.597377 8.3:+53798599 MS.gene59855:CDS
GAGTATAGCTCCTTGTACCG+TGG 0.598585 8.3:+53800398 MS.gene59855:CDS
GTGATGCCGATGATACCATC+TGG 0.601385 8.3:-53797910 None:intergenic
ACTTGTGTCTCCAGCACAGG+AGG 0.604167 8.3:-53798875 None:intergenic
TCTTGAACATATTATCAACA+AGG 0.608367 8.3:-53799763 None:intergenic
GCAGCTGTCATTACGGAGGA+CGG 0.611765 8.3:-53799387 None:intergenic
ATACATACAACATCAGGTGC+CGG 0.615319 8.3:-53797524 None:intergenic
GCAAATATCTGTGACTGCTG+AGG 0.616027 8.3:+53798904 MS.gene59855:CDS
CTTGAACATATTATCAACAA+GGG 0.626265 8.3:-53799762 None:intergenic
ATATCTGTGACTGCTGAGGA+TGG 0.626749 8.3:+53798908 MS.gene59855:CDS
GAGAGAGCTCACGGCCATTG+TGG 0.628746 8.3:-53797935 None:intergenic
TGTTCCTGATGATTCACAGA+AGG 0.634860 8.3:+53799060 MS.gene59855:CDS
AAGTCTACAATCCAGAAAAG+GGG 0.635113 8.3:+53798948 MS.gene59855:CDS
TAGTGCGGAGATCCTATCTG+TGG 0.636226 8.3:+53798536 MS.gene59855:CDS
GGAAACAATCAAGAAACTGA+AGG 0.637783 8.3:+53799516 MS.gene59855:CDS
TCTGGCACACTGGATGGTGA+AGG 0.641996 8.3:-53799459 None:intergenic
CATGTTACCATTCTCAGGAG+AGG 0.648742 8.3:-53798757 None:intergenic
GGGTTATAGTGAACTTAGTG+CGG 0.649351 8.3:+53798521 MS.gene59855:CDS
AAAGCCGTGAGCATGTGCAT+AGG 0.649804 8.3:+53797851 MS.gene59855:CDS
CTTGGTCGTCCTGAACCAGA+TGG 0.650811 8.3:+53797895 MS.gene59855:CDS
AAGTTTGGCCCTATCAAGAG+TGG 0.651104 8.3:+53799785 MS.gene59855:CDS
AGAACAGACACTTACAATGG+AGG 0.661527 8.3:-53799131 None:intergenic
CATCGGCATCACAACCACAA+TGG 0.675733 8.3:+53797921 MS.gene59855:CDS
TGTCCAAGTTAGGACAGCAA+AGG 0.677658 8.3:+53799811 MS.gene59855:CDS
CTAGTGCTGTCAAACAGCCA+CGG 0.679419 8.3:-53800415 None:intergenic
ATAGTAGTACTGTTCAACAA+AGG 0.683995 8.3:-53797818 None:intergenic
TTTGGCCCTATCAAGAGTGG+CGG 0.685024 8.3:+53799788 MS.gene59855:CDS
CATACAACATCAGGTGCCGG+AGG 0.709159 8.3:-53797521 None:intergenic
AGAAGCAGCTGTCATTACGG+AGG 0.717591 8.3:-53799391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr8.3:53799570-53799551 None:intergenic 0.0%
!! TTAAAAAAAACAAAAAAACA+GGG - chr8.3:53799854-53799873 None:intergenic 10.0%
!! TTTAAAAAAAACAAAAAAAC+AGG - chr8.3:53799855-53799874 None:intergenic 10.0%
!! AACTTAGATTCTAATAAATA+TGG + chr8.3:53798369-53798388 MS.gene59855:intron 15.0%
!! ACAATGGAAATAAATTTAAA+AGG - chr8.3:53798324-53798343 None:intergenic 15.0%
!!! CTCATTATTAATTTGTTTTT+AGG + chr8.3:53800202-53800221 MS.gene59855:intron 15.0%
!! AAAAATATTCTTACTTGGAA+TGG - chr8.3:53800163-53800182 None:intergenic 20.0%
!! ACAGAAAAAATATTCTTACT+TGG - chr8.3:53800168-53800187 None:intergenic 20.0%
!! ATTGAAATAAATTCGTGAAA+AGG - chr8.3:53800332-53800351 None:intergenic 20.0%
!! GCTATTCAATTTATTTGAAA+GGG + chr8.3:53799717-53799736 MS.gene59855:CDS 20.0%
!! TAGAATCTAAGTTAACAAAT+GGG - chr8.3:53798362-53798381 None:intergenic 20.0%
!! TATTTATTGATGTGTTCAAT+TGG + chr8.3:53799674-53799693 MS.gene59855:intron 20.0%
!! TTAGAATCTAAGTTAACAAA+TGG - chr8.3:53798363-53798382 None:intergenic 20.0%
! AAAATGCAAACAAGAAACAA+GGG - chr8.3:53798082-53798101 None:intergenic 25.0%
! AAGATATTGTACAAACCAAT+TGG - chr8.3:53798135-53798154 None:intergenic 25.0%
! AATATCACTATGATAAACAC+AGG - chr8.3:53799658-53799677 None:intergenic 25.0%
! AGAACAAGTAACATTTACAA+TGG - chr8.3:53799205-53799224 None:intergenic 25.0%
! ATAGATATACATACAACATC+AGG - chr8.3:53797533-53797552 None:intergenic 25.0%
! ATATCACTATGATAAACACA+GGG - chr8.3:53799657-53799676 None:intergenic 25.0%
! CTTGAACATATTATCAACAA+GGG - chr8.3:53799765-53799784 None:intergenic 25.0%
! GATAATATGTTCAAGAAGTT+TGG + chr8.3:53799770-53799789 MS.gene59855:CDS 25.0%
! GGCTATTCAATTTATTTGAA+AGG + chr8.3:53799716-53799735 MS.gene59855:CDS 25.0%
! TAAAATGCAAACAAGAAACA+AGG - chr8.3:53798083-53798102 None:intergenic 25.0%
! TAACATTTACAATGGAAACT+CGG - chr8.3:53799197-53799216 None:intergenic 25.0%
! TCAATATTCATATCTCCAAT+TGG + chr8.3:53798117-53798136 MS.gene59855:intron 25.0%
! TCTAGTATAAGTACTAATGA+AGG + chr8.3:53799492-53799511 MS.gene59855:CDS 25.0%
! TCTTGAACATATTATCAACA+AGG - chr8.3:53799766-53799785 None:intergenic 25.0%
! TGTTGAGATAAATAGAAGAA+AGG + chr8.3:53800074-53800093 MS.gene59855:intron 25.0%
! TTCTTCTATTTATCTCAACA+TGG - chr8.3:53800074-53800093 None:intergenic 25.0%
! TTGTACAAAATAGTGTTTAG+CGG + chr8.3:53797671-53797690 MS.gene59855:intron 25.0%
!! ATGATACATGATTTGATTTC+TGG + chr8.3:53797742-53797761 MS.gene59855:intron 25.0%
!! TGTTGATGAAAATGAAATCA+AGG + chr8.3:53798707-53798726 MS.gene59855:CDS 25.0%
!!! AAATGCAATTTTGAGAGATT+TGG + chr8.3:53800280-53800299 MS.gene59855:intron 25.0%
!!! GTTTTTAATGTGATTGGTTT+AGG + chr8.3:53797786-53797805 MS.gene59855:intron 25.0%
AAATGCAAACAAGAAACAAG+GGG - chr8.3:53798081-53798100 None:intergenic 30.0%
AACAAGCAACTTAAGTTAAC+AGG - chr8.3:53798829-53798848 None:intergenic 30.0%
AAGAAATTACACCAATGCAT+AGG - chr8.3:53798216-53798235 None:intergenic 30.0%
AATCGCTATTTGACAACATT+GGG + chr8.3:53797719-53797738 MS.gene59855:intron 30.0%
AGTATAAGTACTAATGAAGG+TGG + chr8.3:53799495-53799514 MS.gene59855:CDS 30.0%
ATACTAGAACCATTTGTTTC+TGG - chr8.3:53799480-53799499 None:intergenic 30.0%
ATAGTAGTACTGTTCAACAA+AGG - chr8.3:53797821-53797840 None:intergenic 30.0%
GCATTTAGATGATCATACAA+TGG - chr8.3:53798340-53798359 None:intergenic 30.0%
GTAATGATAAAACAGTTGAC+TGG + chr8.3:53797764-53797783 MS.gene59855:intron 30.0%
TAATCGCTATTTGACAACAT+TGG + chr8.3:53797718-53797737 MS.gene59855:intron 30.0%
TATAGAACAGACACTTACAA+TGG - chr8.3:53799137-53799156 None:intergenic 30.0%
TATTCTTACTTGGAATGGAT+TGG - chr8.3:53800158-53800177 None:intergenic 30.0%
TATTCTTGACTCTATTACAC+TGG + chr8.3:53799224-53799243 MS.gene59855:intron 30.0%
TTTCAAATAACGCCTATTTG+CGG - chr8.3:53797646-53797665 None:intergenic 30.0%
! ATTCTTACTTGGAATGGATT+GGG - chr8.3:53800157-53800176 None:intergenic 30.0%
! CTTTATAGCTGTCTATGTTT+TGG + chr8.3:53798031-53798050 MS.gene59855:intron 30.0%
!! AGTTTGTTTAAGTTTTGCGA+TGG + chr8.3:53797605-53797624 MS.gene59855:intron 30.0%
!! TTAATGTGATTGGTTTAGGT+TGG + chr8.3:53797790-53797809 MS.gene59855:intron 30.0%
!!! TAACCATGTTTTAATACCCT+TGG + chr8.3:53798169-53798188 MS.gene59855:intron 30.0%
!!! TGACTGGTTTTTAATGTGAT+TGG + chr8.3:53797780-53797799 MS.gene59855:intron 30.0%
!!! TTAAGGCGTGGTTTTATTAA+GGG + chr8.3:53798784-53798803 MS.gene59855:intron 30.0%
!!! TTGTTATTTTCCTCTGTAAC+TGG + chr8.3:53799323-53799342 MS.gene59855:intron 30.0%
AAGTCTACAATCCAGAAAAG+GGG + chr8.3:53798948-53798967 MS.gene59855:CDS 35.0%
AGAAGTCTACAATCCAGAAA+AGG + chr8.3:53798946-53798965 MS.gene59855:CDS 35.0%
AGTGAAACTACTAGGAAAAG+AGG - chr8.3:53799933-53799952 None:intergenic 35.0%
ATATCCAAAGCAATGTTCAG+AGG - chr8.3:53798251-53798270 None:intergenic 35.0%
GAAGTCTACAATCCAGAAAA+GGG + chr8.3:53798947-53798966 MS.gene59855:CDS 35.0%
GAATGGTAACATGATGCTTA+AGG + chr8.3:53798767-53798786 MS.gene59855:intron 35.0%
GACAAGAAGATACTGTCAAT+GGG + chr8.3:53798501-53798520 MS.gene59855:CDS 35.0%
GGAAACAATCAAGAAACTGA+AGG + chr8.3:53799516-53799535 MS.gene59855:CDS 35.0%
GTAGCTTAAGGTAATGAAAG+AGG + chr8.3:53799356-53799375 MS.gene59855:intron 35.0%
GTTCTTGCTGAAATTCCTAA+TGG + chr8.3:53799010-53799029 MS.gene59855:CDS 35.0%
TAACTCCCTTCCTAAAAGAA+TGG - chr8.3:53799977-53799996 None:intergenic 35.0%
TCATACAATGTTGTGAATCG+CGG + chr8.3:53797567-53797586 MS.gene59855:intron 35.0%
TGACAAGAAGATACTGTCAA+TGG + chr8.3:53798500-53798519 MS.gene59855:CDS 35.0%
! AGAGATTTGGAGTCAAACAT+TGG + chr8.3:53800293-53800312 MS.gene59855:intron 35.0%
! ATGGAGGCATATGATTTCTT+CGG - chr8.3:53799118-53799137 None:intergenic 35.0%
! GAGATTTGGAGTCAAACATT+GGG + chr8.3:53800294-53800313 MS.gene59855:intron 35.0%
! GCTGCTAGCTAATAACTTTT+TGG + chr8.3:53799880-53799899 MS.gene59855:intron 35.0%
! TATGGATTGAGTGTTAGAAG+TGG + chr8.3:53798387-53798406 MS.gene59855:intron 35.0%
! TTATTTTCCTCTGTAACTGG+TGG + chr8.3:53799326-53799345 MS.gene59855:intron 35.0%
!! AAAGGCATCAGCAAGTAATT+AGG - chr8.3:53798306-53798325 None:intergenic 35.0%
!! AAGCATAGTGCCATTCTTTT+AGG + chr8.3:53799964-53799983 MS.gene59855:intron 35.0%
!! ATAGTGCCATTCTTTTAGGA+AGG + chr8.3:53799968-53799987 MS.gene59855:intron 35.0%
!! GATCCAAGGGTATTAAAACA+TGG - chr8.3:53798175-53798194 None:intergenic 35.0%
!! TAGTGCCATTCTTTTAGGAA+GGG + chr8.3:53799969-53799988 MS.gene59855:intron 35.0%
!!! CTTAAGGCGTGGTTTTATTA+AGG + chr8.3:53798783-53798802 MS.gene59855:intron 35.0%
AAAACCTATGCACATGCTCA+CGG - chr8.3:53797858-53797877 None:intergenic 40.0%
AAGGAACCTGATCATGACAT+TGG + chr8.3:53798726-53798745 MS.gene59855:CDS 40.0%
ACAAAGTAGCCTTTCTCTTG+AGG - chr8.3:53798666-53798685 None:intergenic 40.0%
ACACCAATGCATAGGCATAT+GGG - chr8.3:53798208-53798227 None:intergenic 40.0%
ACGAGAGATCGTAAAGTAAG+AGG + chr8.3:53800103-53800122 MS.gene59855:intron 40.0%
AGAAAGAGCAAGAAAGGAAG+AGG - chr8.3:53799165-53799184 None:intergenic 40.0%
AGAACAGACACTTACAATGG+AGG - chr8.3:53799134-53799153 None:intergenic 40.0%
AGAAGATGAGTGAGTAGTGA+TGG - chr8.3:53800027-53800046 None:intergenic 40.0%
AGAATGGCACTATGCTTATG+AGG - chr8.3:53799961-53799980 None:intergenic 40.0%
AGCATCATGTTACCATTCTC+AGG - chr8.3:53798765-53798784 None:intergenic 40.0%
ATACATACAACATCAGGTGC+CGG - chr8.3:53797527-53797546 None:intergenic 40.0%
ATTTATTTGAAAGGGCTGCC+TGG + chr8.3:53799725-53799744 MS.gene59855:CDS 40.0%
CAAACCTCTGAACATTGCTT+TGG + chr8.3:53798244-53798263 MS.gene59855:intron 40.0%
CAATCAAGAAACTGAAGGTC+TGG + chr8.3:53799521-53799540 MS.gene59855:intron 40.0%
CACTGGGTTTATGATAGGAA+AGG + chr8.3:53798599-53798618 MS.gene59855:CDS 40.0%
CATACAATGTTGTGAATCGC+GGG + chr8.3:53797568-53797587 MS.gene59855:intron 40.0%
CATCAGCAAGTAATTAGGTG+GGG - chr8.3:53798301-53798320 None:intergenic 40.0%
CCTATTTCATTTCACCAAGC+AGG + chr8.3:53798473-53798492 MS.gene59855:intron 40.0%
CTTCGGCACTTCTTCAATTT+GGG - chr8.3:53799101-53799120 None:intergenic 40.0%
CTTCTTGTCAATTTCCTGCT+TGG - chr8.3:53798490-53798509 None:intergenic 40.0%
GAAAGAGCAAGAAAGGAAGA+GGG - chr8.3:53799164-53799183 None:intergenic 40.0%
GAGTCTAGAAAGAGCAAGAA+AGG - chr8.3:53799171-53799190 None:intergenic 40.0%
GCATCAGCAAGTAATTAGGT+GGG - chr8.3:53798302-53798321 None:intergenic 40.0%
GGGTTATAGTGAACTTAGTG+CGG + chr8.3:53798521-53798540 MS.gene59855:CDS 40.0%
TACACCAATGCATAGGCATA+TGG - chr8.3:53798209-53798228 None:intergenic 40.0%
TACCAAGATGTCAGTAAGCT+TGG + chr8.3:53797877-53797896 MS.gene59855:CDS 40.0%
TCTTCGGCACTTCTTCAATT+TGG - chr8.3:53799102-53799121 None:intergenic 40.0%
TGTTCCTGATGATTCACAGA+AGG + chr8.3:53799060-53799079 MS.gene59855:CDS 40.0%
TTCACAGAAGGTAGCTGAAT+TGG + chr8.3:53799072-53799091 MS.gene59855:CDS 40.0%
TTCAGAGAATCAAGTTCCTC+CGG + chr8.3:53797505-53797524 MS.gene59855:CDS 40.0%
TTGGTCACTGGGTTTATGAT+AGG + chr8.3:53798594-53798613 MS.gene59855:CDS 40.0%
! ATACCTTTGCTGTCCTAACT+TGG - chr8.3:53799817-53799836 None:intergenic 40.0%
! CCTGCTTGGTGAAATGAAAT+AGG - chr8.3:53798476-53798495 None:intergenic 40.0%
!! GACAGCAAAGGTATTTCACT+TGG + chr8.3:53799823-53799842 MS.gene59855:intron 40.0%
!! TACTTGGAATGGATTGGGTT+GGG - chr8.3:53800152-53800171 None:intergenic 40.0%
!! TCTTTTAGGAAGGGAGTTAG+TGG + chr8.3:53799978-53799997 MS.gene59855:intron 40.0%
!! TTACTTGGAATGGATTGGGT+TGG - chr8.3:53800153-53800172 None:intergenic 40.0%
AACAGATCCACCAGTTACAG+AGG - chr8.3:53799336-53799355 None:intergenic 45.0%
AAGTTTGGCCCTATCAAGAG+TGG + chr8.3:53799785-53799804 MS.gene59855:CDS 45.0%
AATAGCCCTCAGCTGTCAAA+AGG - chr8.3:53799703-53799722 None:intergenic 45.0%
AATGGTTCACAGAAAGCAGC+TGG + chr8.3:53799028-53799047 MS.gene59855:CDS 45.0%
ACACCCATATGCCTATGCAT+TGG + chr8.3:53798202-53798221 MS.gene59855:intron 45.0%
ACTCTTGTGCATCCACAGAT+AGG - chr8.3:53798551-53798570 None:intergenic 45.0%
AGGTGGGAAGTGAAACTACT+AGG - chr8.3:53799941-53799960 None:intergenic 45.0%
AGTGCTATAGTGCCGCAAAT+AGG + chr8.3:53797631-53797650 MS.gene59855:intron 45.0%
ATATCTGTGACTGCTGAGGA+TGG + chr8.3:53798908-53798927 MS.gene59855:CDS 45.0%
ATGGCACTATGCTTATGAGG+TGG - chr8.3:53799958-53799977 None:intergenic 45.0%
CATGTTACCATTCTCAGGAG+AGG - chr8.3:53798760-53798779 None:intergenic 45.0%
CCAACACTGAAAGAAGGTTG+AGG - chr8.3:53798853-53798872 None:intergenic 45.0%
CCTCAACCTTCTTTCAGTGT+TGG + chr8.3:53798850-53798869 MS.gene59855:intron 45.0%
CCTGAACCAGATGGTATCAT+CGG + chr8.3:53797904-53797923 MS.gene59855:CDS 45.0%
GACCAAGCTTACTGACATCT+TGG - chr8.3:53797882-53797901 None:intergenic 45.0%
GAGGATCCAACACTGAAAGA+AGG - chr8.3:53798859-53798878 None:intergenic 45.0%
GAGTCATTGTCTTGGTCACT+GGG + chr8.3:53798583-53798602 MS.gene59855:CDS 45.0%
GCAAATATCTGTGACTGCTG+AGG + chr8.3:53798904-53798923 MS.gene59855:CDS 45.0%
GCAAGTGTCTGTTGAAGAAG+AGG + chr8.3:53798970-53798989 MS.gene59855:CDS 45.0%
GCAGTCACAGATATTTGCTC+TGG - chr8.3:53798902-53798921 None:intergenic 45.0%
GCTACCTTCTGTGAATCATC+AGG - chr8.3:53799067-53799086 None:intergenic 45.0%
GGAATTTCAGCAAGAACCTC+AGG - chr8.3:53799007-53799026 None:intergenic 45.0%
GGAGATCCAATGTCATGATC+AGG - chr8.3:53798735-53798754 None:intergenic 45.0%
GGCATCAGCAAGTAATTAGG+TGG - chr8.3:53798303-53798322 None:intergenic 45.0%
GGGTGTAGAGTAAGATCCAA+GGG - chr8.3:53798188-53798207 None:intergenic 45.0%
GGTGCAGTTTCTCTCTAAGT+GGG - chr8.3:53800053-53800072 None:intergenic 45.0%
GGTGGATCTGTTGTAGCTTA+AGG + chr8.3:53799344-53799363 MS.gene59855:intron 45.0%
GTAACATGATGCTTAAGGCG+TGG + chr8.3:53798772-53798791 MS.gene59855:intron 45.0%
GTTGTCCTCTCATACCTCAT+GGG + chr8.3:53798053-53798072 MS.gene59855:intron 45.0%
TCCAGTGTGCCAGAAACAAA+TGG + chr8.3:53799468-53799487 MS.gene59855:CDS 45.0%
TGGCACTATGCTTATGAGGT+GGG - chr8.3:53799957-53799976 None:intergenic 45.0%
TGGGTGTAGAGTAAGATCCA+AGG - chr8.3:53798189-53798208 None:intergenic 45.0%
TGGTGCAGTTTCTCTCTAAG+TGG - chr8.3:53800054-53800073 None:intergenic 45.0%
TGTCCAAGTTAGGACAGCAA+AGG + chr8.3:53799811-53799830 MS.gene59855:CDS 45.0%
TTCCTTGCTCCTCAAGAGAA+AGG + chr8.3:53798654-53798673 MS.gene59855:CDS 45.0%
! ATGCACAAGAGTCTTTTGGC+GGG + chr8.3:53798559-53798578 MS.gene59855:CDS 45.0%
! ATGTTGTGAATCGCGGGTTA+TGG + chr8.3:53797574-53797593 MS.gene59855:intron 45.0%
! GATGCACAAGAGTCTTTTGG+CGG + chr8.3:53798558-53798577 MS.gene59855:CDS 45.0%
! GCTGCTTTCTGTGAACCATT+AGG - chr8.3:53799028-53799047 None:intergenic 45.0%
! GTGGATGCACAAGAGTCTTT+TGG + chr8.3:53798555-53798574 MS.gene59855:CDS 45.0%
!! ACCATTTGTTTCTGGCACAC+TGG - chr8.3:53799472-53799491 None:intergenic 45.0%
!! TTTGTTTCTGGCACACTGGA+TGG - chr8.3:53799468-53799487 None:intergenic 45.0%
AAAGCCGTGAGCATGTGCAT+AGG + chr8.3:53797851-53797870 MS.gene59855:CDS 50.0%
AGAAGCAGCTGTCATTACGG+AGG - chr8.3:53799394-53799413 None:intergenic 50.0%
AGAGAGAGAGAGAGAGCTCA+CGG - chr8.3:53797947-53797966 None:intergenic 50.0%
AGAGGAAGCTCTTGTTCCTG+AGG + chr8.3:53798988-53799007 MS.gene59855:CDS 50.0%
AGCCTTTCTCTTGAGGAGCA+AGG - chr8.3:53798659-53798678 None:intergenic 50.0%
AGGGCATGTGTAGCATTTCC+AGG - chr8.3:53799746-53799765 None:intergenic 50.0%
CATCGGCATCACAACCACAA+TGG + chr8.3:53797921-53797940 MS.gene59855:CDS 50.0%
CCCAGAAGCAGCTGTCATTA+CGG - chr8.3:53799397-53799416 None:intergenic 50.0%
CCGTAATGACAGCTGCTTCT+GGG + chr8.3:53799394-53799413 MS.gene59855:CDS 50.0%
CTAGTGCTGTCAAACAGCCA+CGG - chr8.3:53800418-53800437 None:intergenic 50.0%
GACTGCTGAGGATGGTGATA+GGG + chr8.3:53798916-53798935 MS.gene59855:CDS 50.0%
GAGTATAGCTCCTTGTACCG+TGG + chr8.3:53800398-53800417 MS.gene59855:CDS 50.0%
GCAAGTAATTAGGTGGGGTC+TGG - chr8.3:53798296-53798315 None:intergenic 50.0%
GGAGTCATTGTCTTGGTCAC+TGG + chr8.3:53798582-53798601 MS.gene59855:CDS 50.0%
GGTTGTCCTCTCATACCTCA+TGG + chr8.3:53798052-53798071 MS.gene59855:intron 50.0%
GTGATGCCGATGATACCATC+TGG - chr8.3:53797913-53797932 None:intergenic 50.0%
TAGTGCGGAGATCCTATCTG+TGG + chr8.3:53798536-53798555 MS.gene59855:CDS 50.0%
TCCGTAATGACAGCTGCTTC+TGG + chr8.3:53799393-53799412 MS.gene59855:CDS 50.0%
TGACTGCTGAGGATGGTGAT+AGG + chr8.3:53798915-53798934 MS.gene59855:CDS 50.0%
TGTCAAACAGCCACGGTACA+AGG - chr8.3:53800411-53800430 None:intergenic 50.0%
TTACCATTCTCAGGAGAGGC+AGG - chr8.3:53798756-53798775 None:intergenic 50.0%
TTTGGCCCTATCAAGAGTGG+CGG + chr8.3:53799788-53799807 MS.gene59855:CDS 50.0%
! ACAGACACTTGCCCCTTTTC+TGG - chr8.3:53798962-53798981 None:intergenic 50.0%
! CCGATGATACCATCTGGTTC+AGG - chr8.3:53797907-53797926 None:intergenic 50.0%
! GGTTGCCTTTTGACAGCTGA+GGG + chr8.3:53799695-53799714 MS.gene59855:intron 50.0%
! TGCACAAGAGTCTTTTGGCG+GGG + chr8.3:53798560-53798579 MS.gene59855:CDS 50.0%
! TGGTTGCCTTTTGACAGCTG+AGG + chr8.3:53799694-53799713 MS.gene59855:intron 50.0%
!! AGAAACAAGGGGTACCCATG+AGG - chr8.3:53798070-53798089 None:intergenic 50.0%
ACTTGTGTCTCCAGCACAGG+AGG - chr8.3:53798878-53798897 None:intergenic 55.0%
AGAGTGGCGGTGTCCAAGTT+AGG + chr8.3:53799801-53799820 MS.gene59855:CDS 55.0%
CTTGGTCGTCCTGAACCAGA+TGG + chr8.3:53797895-53797914 MS.gene59855:CDS 55.0%
GCAGCTGTCATTACGGAGGA+CGG - chr8.3:53799390-53799409 None:intergenic 55.0%
GGAACTTGTGTCTCCAGCAC+AGG - chr8.3:53798881-53798900 None:intergenic 55.0%
GGACACCGCCACTCTTGATA+GGG - chr8.3:53799796-53799815 None:intergenic 55.0%
GGGTACCCATGAGGTATGAG+AGG - chr8.3:53798061-53798080 None:intergenic 55.0%
TCTCCTGCCTCTCCTGAGAA+TGG + chr8.3:53798750-53798769 MS.gene59855:CDS 55.0%
TCTGGCACACTGGATGGTGA+AGG - chr8.3:53799462-53799481 None:intergenic 55.0%
TGGACACCGCCACTCTTGAT+AGG - chr8.3:53799797-53799816 None:intergenic 55.0%
! AGTGTTGGATCCTCCTGTGC+TGG + chr8.3:53798865-53798884 MS.gene59855:intron 55.0%
! GCACAAGAGTCTTTTGGCGG+GGG + chr8.3:53798561-53798580 MS.gene59855:CDS 55.0%
!! CATACAACATCAGGTGCCGG+AGG - chr8.3:53797524-53797543 None:intergenic 55.0%
GAGAGAGCTCACGGCCATTG+TGG - chr8.3:53797938-53797957 None:intergenic 60.0%
TGGCGGGGGAGTCATTGTCT+TGG + chr8.3:53798575-53798594 MS.gene59855:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 53797497 53800448 53797497 ID=MS.gene59855
chr8.3 mRNA 53797497 53800448 53797497 ID=MS.gene59855.t1;Parent=MS.gene59855
chr8.3 exon 53797497 53797538 53797497 ID=MS.gene59855.t1.exon1;Parent=MS.gene59855.t1
chr8.3 CDS 53797497 53797538 53797497 ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1
chr8.3 exon 53797808 53797945 53797808 ID=MS.gene59855.t1.exon2;Parent=MS.gene59855.t1
chr8.3 CDS 53797808 53797945 53797808 ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1
chr8.3 exon 53798495 53798771 53798495 ID=MS.gene59855.t1.exon3;Parent=MS.gene59855.t1
chr8.3 CDS 53798495 53798771 53798495 ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1
chr8.3 exon 53798867 53799138 53798867 ID=MS.gene59855.t1.exon4;Parent=MS.gene59855.t1
chr8.3 CDS 53798867 53799138 53798867 ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1
chr8.3 exon 53799360 53799537 53799360 ID=MS.gene59855.t1.exon5;Parent=MS.gene59855.t1
chr8.3 CDS 53799360 53799537 53799360 ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1
chr8.3 exon 53799711 53799832 53799711 ID=MS.gene59855.t1.exon6;Parent=MS.gene59855.t1
chr8.3 CDS 53799711 53799832 53799711 ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1
chr8.3 exon 53800389 53800448 53800389 ID=MS.gene59855.t1.exon7;Parent=MS.gene59855.t1
chr8.3 CDS 53800389 53800448 53800389 ID=cds.MS.gene59855.t1;Parent=MS.gene59855.t1
Gene Sequence

>MS.gene59855

ATGGCAACTTCAGAGAATCAAGTTCCTCCGGCACCTGATGTTGTATGTATATCTATGTTCTTATTGTTTTTCATACAATGTTGTGAATCGCGGGTTATGGAAAATAGCAGTTTGTTTAAGTTTTGCGATGGTGCAGTGCTATAGTGCCGCAAATAGGCGTTATTTGAAAAAACTTTGTACAAAATAGTGTTTAGCGGAACAATAGTGCTATAGCGACACTATAATCGCTATTTGACAACATTGGGATGATACATGATTTGATTTCTGGTAATGATAAAACAGTTGACTGGTTTTTAATGTGATTGGTTTAGGTTGGTCATGCCTTTGTTGAACAGTACTACTATATGTTGCATGAAAGCCGTGAGCATGTGCATAGGTTTTACCAAGATGTCAGTAAGCTTGGTCGTCCTGAACCAGATGGTATCATCGGCATCACAACCACAATGGCCGTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTCTATCTCTGTTGCACTTTATAGCTGTCTATGTTTTGGTTGTCCTCTCATACCTCATGGGTACCCCTTGTTTCTTGTTTGCATTTTAATATATACATGTATTCAATATTCATATCTCCAATTGGTTTGTACAATATCTTATATGACATTGATGTAACCATGTTTTAATACCCTTGGATCTTACTCTACACCCATATGCCTATGCATTGGTGTAATTTCTTGTTTATTTCAAACCTCTGAACATTGCTTTGGATATGTATTGAAAAGATGCTGTAACTCCAGACCCCACCTAATTACTTGCTGATGCCTTTTAAATTTATTTCCATTGTATGATCATCTAAATGCCCATTTGTTAACTTAGATTCTAATAAATATGGATTGAGTGTTAGAAGTGGTTGAACTTGAAAACAATGAATTTAATCTTAATATATCTCTCTAAATTTTATATCTTAATGTATCCTATTTCATTTCACCAAGCAGGAAATTGACAAGAAGATACTGTCAATGGGTTATAGTGAACTTAGTGCGGAGATCCTATCTGTGGATGCACAAGAGTCTTTTGGCGGGGGAGTCATTGTCTTGGTCACTGGGTTTATGATAGGAAAGGATAACATTAAGCAGAAATTTACTCAATGTTTCTTCCTTGCTCCTCAAGAGAAAGGCTACTTTGTTTTGAATGATATTTTCAGATATGTTGATGAAAATGAAATCAAGGAACCTGATCATGACATTGGATCTCCTGCCTCTCCTGAGAATGGTAACATGATGCTTAAGGCGTGGTTTTATTAAGGGTTTTTGTTTCATACATTTTCCTGTTAACTTAAGTTGCTTGTTTCCTCAACCTTCTTTCAGTGTTGGATCCTCCTGTGCTGGAGACACAAGTTCCAGAGCAAATATCTGTGACTGCTGAGGATGGTGATAGGGAAGAACTAGAAGTCTACAATCCAGAAAAGGGGCAAGTGTCTGTTGAAGAAGAGGAAGCTCTTGTTCCTGAGGTTCTTGCTGAAATTCCTAATGGTTCACAGAAAGCAGCTGGTTTTGATCATGTTCCTGATGATTCACAGAAGGTAGCTGAATTGGCATCCCAAATTGAAGAAGTGCCGAAGAAATCATATGCCTCCATTGTAAGTGTCTGTTCTATAAATTCCCTCTTCCTTTCTTGCTCTTTCTAGACTCTTACCGAGTTTCCATTGTAAATGTTACTTGTTCTATTCTTGACTCTATTACACTGGTGAAAATGCTGAAAATTAAACAGAATGATACTTTGATTCATTTTATCTAGAAGAGTAATAATTTCTAGAAGAATACTTGTTATTTTCCTCTGTAACTGGTGGATCTGTTGTAGCTTAAGGTAATGAAAGAGGCTGCTGCTCCGTCCTCCGTAATGACAGCTGCTTCTGGGAGAACTTCTAATAAGATTCAAGAACAGCAGAGTGCTGCTGCACCTTCACCATCCAGTGTGCCAGAAACAAATGGTTCTAGTATAAGTACTAATGAAGGTGGAAACAATCAAGAAACTGAAGGTCTGGTGAACCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATATGTATATGTATGAGACTATTACTTGAATAGTTCAAATTTCCCTGTGTTTATCATAGTGATATTTATTGATGTGTTCAATTGGTTGCCTTTTGACAGCTGAGGGCTATTCAATTTATTTGAAAGGGCTGCCTGGAAATGCTACACATGCCCTTGTTGATAATATGTTCAAGAAGTTTGGCCCTATCAAGAGTGGCGGTGTCCAAGTTAGGACAGCAAAGGTATTTCACTTGGCGATTCCCTGTTTTTTTGTTTTTTTTAAATGTTTGCTGCTAGCTAATAACTTTTTGGCAACGTGTATTTAGAAAAACAATGTAACCTCTTTTCCTAGTAGTTTCACTTCCCACCTCATAAGCATAGTGCCATTCTTTTAGGAAGGGAGTTAGTGGACAAATATCTGAATCACTATTAACCATCACTACTCACTCATCTTCTACTCCCACTTAGAGAGAAACTGCACCATGTTGAGATAAATAGAAGAAAGGCTTAGAACGAGAGATCGTAAAGTAAGAGGAAAATATCGAAGAAAATAAACGTCCCAACCCAATCCATTCCAAGTAAGAATATTTTTTCTGTCTTACATTCTTTATCTCATTATTAATTTGTTTTTAGGAATCAATTTCTGTTTTGAAAATTAAAGAATGATAATATGTAGAGTTAGAAATGTTAAATGCAATTTTGAGAGATTTGGAGTCAAACATTGGGTTGAAGTAGAGACCTTTTCACGAATTTATTTCAATTGAAATAGTATATCTTAATTTTCTATTCAATGTTTAGCATATGTTTGAGTATAGCTCCTTGTACCGTGGCTGTTTGACAGCACTAGTTCTTAATTAG

Protein sequence

>MS.gene59855.t1

MATSENQVPPAPDVVGHAFVEQYYYMLHESREHVHRFYQDVSKLGRPEPDGIIGITTTMAEIDKKILSMGYSELSAEILSVDAQESFGGGVIVLVTGFMIGKDNIKQKFTQCFFLAPQEKGYFVLNDIFRYVDENEIKEPDHDIGSPASPENVLDPPVLETQVPEQISVTAEDGDREELEVYNPEKGQVSVEEEEALVPEVLAEIPNGSQKAAGFDHVPDDSQKVAELASQIEEVPKKSYASILKVMKEAAAPSSVMTAASGRTSNKIQEQQSAAAPSPSSVPETNGSSISTNEGGNNQETEAEGYSIYLKGLPGNATHALVDNMFKKFGPIKSGGVQVRTAKHMFEYSSLYRGCLTALVLN