AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59912

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59912.t1 MTR_4g113280 96.094 384 4 1 1 384 113 485 0.0 758
MS.gene59912.t1 MTR_2g054940 90.365 384 37 0 1 384 124 507 0.0 733
MS.gene59912.t1 MTR_7g081695 87.071 379 37 1 1 379 124 490 0.0 687
MS.gene59912.t1 MTR_1g076430 81.250 384 72 0 1 384 125 508 0.0 671
MS.gene59912.t1 MTR_1g041085 81.771 384 70 0 1 384 131 514 0.0 665
MS.gene59912.t1 MTR_7g118170 74.536 377 93 2 10 383 153 529 0.0 602
MS.gene59912.t1 MTR_4g070270 71.466 382 108 1 1 382 122 502 0.0 585
MS.gene59912.t1 MTR_1g110930 66.234 385 127 2 1 384 110 492 0.0 548
MS.gene59912.t1 MTR_5g056510 66.753 385 125 2 1 384 110 492 0.0 546
MS.gene59912.t1 MTR_6g074880 63.117 385 141 1 1 384 86 470 0.0 514
MS.gene59912.t1 MTR_4g054630 62.924 383 141 1 1 382 84 466 0.0 513
MS.gene59912.t1 MTR_4g054415 62.924 383 141 1 1 382 43 425 0.0 512
MS.gene59912.t1 MTR_6g032965 60.574 383 151 0 1 383 3 385 5.89e-178 500
MS.gene59912.t1 MTR_3g105550 58.163 392 154 2 1 382 145 536 8.74e-175 498
MS.gene59912.t1 MTR_7g118160 57.105 373 116 3 10 380 87 417 1.34e-153 440
MS.gene59912.t1 MTR_2g013740 58.904 365 146 2 10 374 143 503 6.18e-152 439
MS.gene59912.t1 MTR_2g007020 54.133 375 170 2 10 383 79 452 7.89e-150 431
MS.gene59912.t1 MTR_2g436480 51.475 373 178 2 12 382 80 451 1.95e-142 412
MS.gene59912.t1 MTR_1g102290 46.194 381 204 1 1 380 104 484 4.54e-124 367
MS.gene59912.t1 MTR_3g072980 45.119 379 207 1 2 380 106 483 1.42e-115 345
MS.gene59912.t1 MTR_3g072940 45.119 379 207 1 2 380 106 483 1.43e-115 345
MS.gene59912.t1 MTR_6g051440 45.383 379 206 1 2 380 105 482 8.30e-110 330
MS.gene59912.t1 MTR_4g062270 42.818 369 203 3 16 379 68 433 1.76e-104 316
MS.gene59912.t1 MTR_1g115560 40.665 391 207 4 13 381 66 453 8.68e-103 312
MS.gene59912.t1 MTR_4g062190 40.682 381 203 4 16 379 68 442 3.54e-101 308
MS.gene59912.t1 MTR_2g096210 40.365 384 208 4 13 379 65 444 5.88e-101 307
MS.gene59912.t1 MTR_4g062170 41.775 383 201 5 13 379 65 441 6.27e-99 302
MS.gene59912.t1 MTR_4g054260 55.469 256 96 2 128 382 87 325 1.13e-97 294
MS.gene59912.t1 MTR_4g053905 66.667 159 53 0 224 382 1 159 1.46e-75 231
MS.gene59912.t1 MTR_4g054265 52.000 75 36 0 1 75 43 117 3.20e-20 85.9
MS.gene59912.t1 MTR_7g086260 60.000 50 20 0 222 271 25 74 7.61e-14 67.0
MS.gene59912.t1 MTR_3g086260 25.000 268 158 8 105 361 154 389 1.74e-12 68.6
MS.gene59912.t1 MTR_4g075560 26.639 244 142 8 114 349 164 378 3.04e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59912.t1 AT2G26640 85.156 384 57 0 1 384 122 505 0.0 703
MS.gene59912.t1 AT1G04220 78.517 391 77 3 1 384 127 517 0.0 642
MS.gene59912.t1 AT5G43760 79.487 390 74 3 1 384 133 522 0.0 632
MS.gene59912.t1 AT1G19440 71.842 380 106 1 1 380 134 512 0.0 590
MS.gene59912.t1 AT2G16280 71.204 382 109 1 1 382 130 510 0.0 588
MS.gene59912.t1 AT1G01120 70.667 375 109 1 9 382 152 526 0.0 585
MS.gene59912.t1 AT4G34510 67.624 383 122 2 1 382 104 485 0.0 559
MS.gene59912.t1 AT1G68530 65.625 384 131 1 1 384 111 493 0.0 541
MS.gene59912.t1 AT1G25450 65.104 384 133 1 1 384 106 488 0.0 535
MS.gene59912.t1 AT2G46720 63.564 376 133 2 10 382 91 465 0.0 518
MS.gene59912.t1 AT2G15090 66.033 368 124 1 15 382 113 479 0.0 516
MS.gene59912.t1 AT4G34520 63.158 380 138 2 4 382 112 490 1.46e-177 504
MS.gene59912.t1 AT3G10280 62.234 376 131 3 10 382 91 458 3.26e-176 498
MS.gene59912.t1 AT2G26250 56.511 407 149 2 1 380 143 548 8.70e-172 491
MS.gene59912.t1 AT4G34250 61.685 368 140 1 15 382 121 487 1.44e-171 488
MS.gene59912.t1 AT5G49070 51.596 376 175 3 12 383 84 456 8.86e-139 404
MS.gene59912.t1 AT1G71160 50.538 372 182 2 9 380 77 446 2.72e-138 402
MS.gene59912.t1 AT3G52160 49.448 362 152 2 10 371 6 336 4.36e-129 374
MS.gene59912.t1 AT3G52160 49.448 362 152 2 10 371 119 449 2.55e-127 374
MS.gene59912.t1 AT5G04530 42.246 374 206 4 13 379 67 437 7.23e-106 320
MS.gene59912.t1 AT2G28630 41.542 402 208 6 5 379 45 446 1.31e-105 319
MS.gene59912.t1 AT2G28630 41.542 402 208 6 5 379 45 446 1.31e-105 319
MS.gene59912.t1 AT1G68530 60.669 239 94 0 1 239 111 349 1.03e-104 313
MS.gene59912.t1 AT1G07720 43.194 382 197 5 16 379 68 447 1.72e-102 311
MS.gene59912.t1 AT1G07720 43.194 382 197 5 16 379 111 490 3.39e-102 312
MS.gene59912.t1 AT5G49070 47.391 230 121 0 12 241 84 313 1.20e-73 232
MS.gene59912.t1 AT4G34850 25.781 256 152 9 113 359 91 317 2.01e-13 70.9
MS.gene59912.t1 AT4G34850 25.781 256 152 9 113 359 164 390 4.93e-13 70.5

Find 93 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACATTGAATTGGTATTT+TGG 0.124443 8.4:-15021097 MS.gene59912:CDS
TGCCATTGGCATCTTCTTCT+TGG 0.201240 8.4:+15020912 None:intergenic
TGCCGGAGGTAGAGCTGTTT+TGG 0.290721 8.4:-15020684 MS.gene59912:CDS
AGGATGACACTTTATCGTTT+TGG 0.293129 8.4:-15020611 MS.gene59912:CDS
TCCCTTCTTAATTCTCCCTT+TGG 0.293276 8.4:+15020541 None:intergenic
ATGACCAATGCATAGGAATT+AGG 0.295997 8.4:+15021133 None:intergenic
ATCAGAATTCCTATATCTTT+AGG 0.301992 8.4:+15021316 None:intergenic
TACCTTGTCAAAAGATCTTA+TGG 0.307989 8.4:-15020879 MS.gene59912:CDS
AGCTTGAAATCAGGAATATA+AGG 0.312020 8.4:+15020731 None:intergenic
TTTCTAGCTTCTTTCATTGA+AGG 0.316291 8.4:+15021400 None:intergenic
GCTTCTTTCATTGAAGGATT+AGG 0.319754 8.4:+15021406 None:intergenic
CGATAAAGTGTCATCCTTGA+TGG 0.332202 8.4:+15020617 None:intergenic
GGTGGGATGGGTTGCAGTGC+GGG 0.335773 8.4:-15021199 MS.gene59912:CDS
TGGCAAATAGCATTTGGTTC+TGG 0.340846 8.4:-15020509 MS.gene59912:CDS
GCCATTGGCATCTTCTTCTT+GGG 0.342521 8.4:+15020913 None:intergenic
GAAGATGCCAATGGCAATAT+TGG 0.352257 8.4:-15020905 MS.gene59912:CDS
CAGTTCACTTTGGTATGAAT+TGG 0.362955 8.4:-15020576 MS.gene59912:CDS
TTCTAATTGTTTGTTTCGAA+TGG 0.382081 8.4:-15021053 MS.gene59912:CDS
ACAGTAAAGCCTAAAGATAT+AGG 0.416419 8.4:-15021325 MS.gene59912:CDS
AAAGATCTTATGGCAGTTGC+CGG 0.419635 8.4:-15020869 MS.gene59912:CDS
AGAACATGGCAAATAGCATT+TGG 0.419756 8.4:-15020515 MS.gene59912:CDS
GATACCTTTGGAACATCAAC+AGG 0.425393 8.4:+15020395 None:intergenic
TTGGAACATCAACAGGAAAC+TGG 0.427742 8.4:+15020402 None:intergenic
TCTAATTGTTTGTTTCGAAT+GGG 0.432398 8.4:-15021052 MS.gene59912:CDS
TGGAGAATATCACATTGAAT+TGG 0.437805 8.4:-15021105 MS.gene59912:CDS
TGCGAACCGTGGTGATCAAT+TGG 0.438062 8.4:+15020975 None:intergenic
GCAGCTATCACCATGGCATA+TGG 0.439140 8.4:-15020642 MS.gene59912:CDS
TTGAAGATAGCGACGGAGTT+GGG 0.440924 8.4:+15021272 None:intergenic
CGAAAGATTCTTGAGAGATC+GGG 0.455522 8.4:-15021475 MS.gene59912:CDS
CTGTTCTTCACCACATTGGT+TGG 0.466086 8.4:-15020782 MS.gene59912:CDS
TTCTTGAGAGATCGGGACTC+GGG 0.466115 8.4:-15021468 MS.gene59912:CDS
ATTCTTGAGAGATCGGGACT+CGG 0.466508 8.4:-15021469 MS.gene59912:CDS
GGAAAGTTAAGAACAGCCTC+TGG 0.468115 8.4:+15021430 None:intergenic
TCAAAAGCTAGCTTGAAATC+AGG 0.468264 8.4:+15020722 None:intergenic
GCGAAAGATTCTTGAGAGAT+CGG 0.468284 8.4:-15021476 MS.gene59912:CDS
AACAGTAGTTGTTCTGATGT+TGG 0.477505 8.4:+15020800 None:intergenic
TGTTCTTCACCACATTGGTT+GGG 0.482146 8.4:-15020781 MS.gene59912:CDS
GTGCAGTGTGGAAGGCTCTC+AGG 0.489224 8.4:-15020472 MS.gene59912:CDS
AGCTACAACCTAGGTGGGAT+GGG 0.489907 8.4:-15021211 MS.gene59912:CDS
AAAACTAATATCACTACGCT+AGG 0.493178 8.4:-15020836 MS.gene59912:CDS
AGCCAAAGGGAGAATTAAGA+AGG 0.519483 8.4:-15020543 MS.gene59912:CDS
ATTGAAGATAGCGACGGAGT+TGG 0.522625 8.4:+15021271 None:intergenic
GTCAATCATTACAAGCTTCG+AGG 0.523795 8.4:-15021244 MS.gene59912:CDS
CTTACTAAATAGCTCATCAA+TGG 0.525994 8.4:+15021351 None:intergenic
CTATGCATTGGTCATTAGCA+TGG 0.531088 8.4:-15021125 MS.gene59912:CDS
GGAAATTTATGGATCAGTCT+AGG 0.532242 8.4:-15021537 None:intergenic
CATAGGAATTAGGATTGGCC+TGG 0.532315 8.4:+15021143 None:intergenic
ATCCAAAACAGCTCTACCTC+CGG 0.535564 8.4:+15020682 None:intergenic
CAATCCTAATTCCTATGCAT+TGG 0.538699 8.4:-15021137 MS.gene59912:CDS
GTGCAACAGTGCAGTGTGGA+AGG 0.541767 8.4:-15020480 MS.gene59912:CDS
GAGCTACAACCTAGGTGGGA+TGG 0.541792 8.4:-15021212 MS.gene59912:CDS
CATGGCATATGGAGCCATCA+AGG 0.542439 8.4:-15020631 MS.gene59912:CDS
AGGTGGGATGGGTTGCAGTG+CGG 0.542640 8.4:-15021200 MS.gene59912:CDS
TCTTTCATTGAAGGATTAGG+AGG 0.545431 8.4:+15021409 None:intergenic
GTGGGATGGGTTGCAGTGCG+GGG 0.548925 8.4:-15021198 MS.gene59912:CDS
GTTTCCTGTTGATGTTCCAA+AGG 0.557767 8.4:-15020399 None:intergenic
ACACATCTAGCAGTTCACTT+TGG 0.560068 8.4:-15020586 MS.gene59912:CDS
TGGTCAATCTCATCTATCCA+AGG 0.561417 8.4:+15020422 None:intergenic
GTTTCGAATGGGAGGAGCTG+TGG 0.564123 8.4:-15021041 MS.gene59912:CDS
GAAGCTGAGACTGTGATGTT+CGG 0.565891 8.4:-15021376 MS.gene59912:CDS
TCAATCATTACAAGCTTCGA+GGG 0.569665 8.4:-15021243 MS.gene59912:CDS
ACTACTGTTCTTCACCACAT+TGG 0.569759 8.4:-15020786 MS.gene59912:CDS
AATTGTTTGTTTCGAATGGG+AGG 0.571309 8.4:-15021049 MS.gene59912:CDS
AATATAAAGAGCTACAACCT+AGG 0.575611 8.4:-15021220 MS.gene59912:CDS
CAGGACAATCAACCCTGTGA+AGG 0.575639 8.4:-15020453 MS.gene59912:CDS
TCTTGCTAAAGATCTTCTCC+AGG 0.579124 8.4:-15021161 MS.gene59912:CDS
TAAAGAGCTACAACCTAGGT+GGG 0.586492 8.4:-15021216 MS.gene59912:CDS
TGGCTTACACAGAAGCCAAA+GGG 0.588822 8.4:-15020556 MS.gene59912:CDS
GGTAACACCAATATTGCCAT+TGG 0.592052 8.4:+15020898 None:intergenic
AAACAGCTCTACCTCCGGCA+TGG 0.599316 8.4:+15020687 None:intergenic
CAATGCATAGGAATTAGGAT+TGG 0.604720 8.4:+15021138 None:intergenic
CACCACGGTTCGCACTAACA+AGG 0.615650 8.4:-15020966 MS.gene59912:CDS
TCTTGAGAGATCGGGACTCG+GGG 0.615846 8.4:-15021467 MS.gene59912:CDS
GCCAAAGGGAGAATTAAGAA+GGG 0.617206 8.4:-15020542 MS.gene59912:CDS
CATGCTAATGACCAATGCAT+AGG 0.618448 8.4:+15021126 None:intergenic
TATATCTTTAGGCTTTACTG+TGG 0.620510 8.4:+15021327 None:intergenic
TTGGCTTACACAGAAGCCAA+AGG 0.624548 8.4:-15020557 MS.gene59912:CDS
CTGTGAAGGAGAAAAGCCCT+TGG 0.625413 8.4:-15020439 MS.gene59912:CDS
AAACTAATATCACTACGCTA+GGG 0.626894 8.4:-15020835 MS.gene59912:CDS
GGTCAATCTCATCTATCCAA+GGG 0.627776 8.4:+15020423 None:intergenic
CACTGCAACCCATCCCACCT+AGG 0.640569 8.4:+15021203 None:intergenic
ATAAAGAGCTACAACCTAGG+TGG 0.642158 8.4:-15021217 MS.gene59912:CDS
TCTGATGTTGGAAGTACGAG+AGG 0.642235 8.4:+15020812 None:intergenic
GGAATCTACTTATCTTCCAG+AGG 0.644232 8.4:-15021446 MS.gene59912:CDS
TTAAGAAGGGAGATAGAACA+TGG 0.646961 8.4:-15020529 MS.gene59912:CDS
ACCCAAGAAGAAGATGCCAA+TGG 0.668165 8.4:-15020914 MS.gene59912:CDS
AAGTTTCTTCCCAACCAATG+TGG 0.668173 8.4:+15020772 None:intergenic
ACAATCATTGAAGATAGCGA+CGG 0.668618 8.4:+15021265 None:intergenic
CTTGATGGCTCCATATGCCA+TGG 0.676445 8.4:+15020632 None:intergenic
TCAAGTGCAACAGTGCAGTG+TGG 0.695312 8.4:-15020484 MS.gene59912:CDS
AAAACTTGCAGCTATCACCA+TGG 0.706018 8.4:-15020649 MS.gene59912:CDS
AGCCTTGTTAGTGCGAACCG+TGG 0.715624 8.4:+15020964 None:intergenic
AAAATACCAATTGATCACCA+CGG 0.722409 8.4:-15020981 MS.gene59912:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATCAGAATTCCTATATCTTT+AGG + chr8.4:15020616-15020635 None:intergenic 25.0%
! TCTAATTGTTTGTTTCGAAT+GGG - chr8.4:15020877-15020896 MS.gene59912:CDS 25.0%
! TTCTAATTGTTTGTTTCGAA+TGG - chr8.4:15020876-15020895 MS.gene59912:CDS 25.0%
!! ATCACATTGAATTGGTATTT+TGG - chr8.4:15020832-15020851 MS.gene59912:CDS 25.0%
!!! ATTAGTTTTTAAAGCATCAC+CGG + chr8.4:15021082-15021101 None:intergenic 25.0%
AAAACTAATATCACTACGCT+AGG - chr8.4:15021093-15021112 MS.gene59912:CDS 30.0%
AAAATACCAATTGATCACCA+CGG - chr8.4:15020948-15020967 MS.gene59912:CDS 30.0%
AAACTAATATCACTACGCTA+GGG - chr8.4:15021094-15021113 MS.gene59912:CDS 30.0%
AATATAAAGAGCTACAACCT+AGG - chr8.4:15020709-15020728 MS.gene59912:CDS 30.0%
ACAGTAAAGCCTAAAGATAT+AGG - chr8.4:15020604-15020623 MS.gene59912:CDS 30.0%
AGCTTGAAATCAGGAATATA+AGG + chr8.4:15021201-15021220 None:intergenic 30.0%
CTTACTAAATAGCTCATCAA+TGG + chr8.4:15020581-15020600 None:intergenic 30.0%
TACCTTGTCAAAAGATCTTA+TGG - chr8.4:15021050-15021069 MS.gene59912:CDS 30.0%
TATATCTTTAGGCTTTACTG+TGG + chr8.4:15020605-15020624 None:intergenic 30.0%
TGGAGAATATCACATTGAAT+TGG - chr8.4:15020824-15020843 MS.gene59912:CDS 30.0%
! TAGGATGATCAGTACTTTTA+CGG - chr8.4:15020411-15020430 MS.gene59912:CDS 30.0%
!! ATTGGTATTTTGGAAACGAT+CGG - chr8.4:15020842-15020861 MS.gene59912:CDS 30.0%
!! TTTCTAGCTTCTTTCATTGA+AGG + chr8.4:15020532-15020551 None:intergenic 30.0%
AACAGTAGTTGTTCTGATGT+TGG + chr8.4:15021132-15021151 None:intergenic 35.0%
AATTGTTTGTTTCGAATGGG+AGG - chr8.4:15020880-15020899 MS.gene59912:CDS 35.0%
ACAATCATTGAAGATAGCGA+CGG + chr8.4:15020667-15020686 None:intergenic 35.0%
AGAACATGGCAAATAGCATT+TGG - chr8.4:15021414-15021433 MS.gene59912:CDS 35.0%
ATGACCAATGCATAGGAATT+AGG + chr8.4:15020799-15020818 None:intergenic 35.0%
CAATCCTAATTCCTATGCAT+TGG - chr8.4:15020792-15020811 MS.gene59912:CDS 35.0%
CAATGCATAGGAATTAGGAT+TGG + chr8.4:15020794-15020813 None:intergenic 35.0%
CAGTTCACTTTGGTATGAAT+TGG - chr8.4:15021353-15021372 MS.gene59912:CDS 35.0%
GCTTCTTTCATTGAAGGATT+AGG + chr8.4:15020526-15020545 None:intergenic 35.0%
TCAATCATTACAAGCTTCGA+GGG - chr8.4:15020686-15020705 MS.gene59912:CDS 35.0%
TCTTTCATTGAAGGATTAGG+AGG + chr8.4:15020523-15020542 None:intergenic 35.0%
TTAAGAAGGGAGATAGAACA+TGG - chr8.4:15021400-15021419 MS.gene59912:CDS 35.0%
! AGGATGACACTTTATCGTTT+TGG - chr8.4:15021318-15021337 MS.gene59912:CDS 35.0%
! TCAAAAGCTAGCTTGAAATC+AGG + chr8.4:15021210-15021229 None:intergenic 35.0%
! TGCCATAAGATCTTTTGACA+AGG + chr8.4:15021055-15021074 None:intergenic 35.0%
! TTTTGATCTTCTTCTGTCTG+AGG + chr8.4:15020932-15020951 None:intergenic 35.0%
!! TCTTCTGTCTGAGGTTTTAT+TGG + chr8.4:15020923-15020942 None:intergenic 35.0%
AAAACTTGCAGCTATCACCA+TGG - chr8.4:15021280-15021299 MS.gene59912:CDS 40.0%
AAAGATCTTATGGCAGTTGC+CGG - chr8.4:15021060-15021079 MS.gene59912:CDS 40.0%
AAGTTTCTTCCCAACCAATG+TGG + chr8.4:15021160-15021179 None:intergenic 40.0%
ACACATCTAGCAGTTCACTT+TGG - chr8.4:15021343-15021362 MS.gene59912:CDS 40.0%
ACTACTGTTCTTCACCACAT+TGG - chr8.4:15021143-15021162 MS.gene59912:CDS 40.0%
AGCCAAAGGGAGAATTAAGA+AGG - chr8.4:15021386-15021405 MS.gene59912:CDS 40.0%
ATAAAGAGCTACAACCTAGG+TGG - chr8.4:15020712-15020731 MS.gene59912:CDS 40.0%
CATGCTAATGACCAATGCAT+AGG + chr8.4:15020806-15020825 None:intergenic 40.0%
CGAAAGATTCTTGAGAGATC+GGG - chr8.4:15020454-15020473 MS.gene59912:CDS 40.0%
GAAGATGCCAATGGCAATAT+TGG - chr8.4:15021024-15021043 MS.gene59912:CDS 40.0%
GCCAAAGGGAGAATTAAGAA+GGG - chr8.4:15021387-15021406 MS.gene59912:CDS 40.0%
GCGAAAGATTCTTGAGAGAT+CGG - chr8.4:15020453-15020472 MS.gene59912:CDS 40.0%
GGAATCTACTTATCTTCCAG+AGG - chr8.4:15020483-15020502 MS.gene59912:CDS 40.0%
GGTAACACCAATATTGCCAT+TGG + chr8.4:15021034-15021053 None:intergenic 40.0%
GGTCAATCTCATCTATCCAA+GGG + chr8.4:15021509-15021528 None:intergenic 40.0%
GTCAATCATTACAAGCTTCG+AGG - chr8.4:15020685-15020704 MS.gene59912:CDS 40.0%
TAAAGAGCTACAACCTAGGT+GGG - chr8.4:15020713-15020732 MS.gene59912:CDS 40.0%
TCCCTTCTTAATTCTCCCTT+TGG + chr8.4:15021391-15021410 None:intergenic 40.0%
TCTTGCTAAAGATCTTCTCC+AGG - chr8.4:15020768-15020787 MS.gene59912:CDS 40.0%
TGGTCAATCTCATCTATCCA+AGG + chr8.4:15021510-15021529 None:intergenic 40.0%
TTGGAACATCAACAGGAAAC+TGG + chr8.4:15021530-15021549 None:intergenic 40.0%
! CGATAAAGTGTCATCCTTGA+TGG + chr8.4:15021315-15021334 None:intergenic 40.0%
! CTATGCATTGGTCATTAGCA+TGG - chr8.4:15020804-15020823 MS.gene59912:CDS 40.0%
! GAACATTTTTGCATCCATGC+CGG - chr8.4:15021228-15021247 MS.gene59912:CDS 40.0%
! GATGATCAGTACTTTTACGG+AGG - chr8.4:15020414-15020433 MS.gene59912:CDS 40.0%
! TGGCAAATAGCATTTGGTTC+TGG - chr8.4:15021420-15021439 MS.gene59912:CDS 40.0%
! TGTTCTTCACCACATTGGTT+GGG - chr8.4:15021148-15021167 MS.gene59912:CDS 40.0%
!! TAGAGCTGTTTTGGATGAAC+TGG - chr8.4:15021254-15021273 MS.gene59912:CDS 40.0%
ACCCAAGAAGAAGATGCCAA+TGG - chr8.4:15021015-15021034 MS.gene59912:CDS 45.0%
ATCCAAAACAGCTCTACCTC+CGG + chr8.4:15021250-15021269 None:intergenic 45.0%
ATTCTTGAGAGATCGGGACT+CGG - chr8.4:15020460-15020479 MS.gene59912:CDS 45.0%
ATTGAAGATAGCGACGGAGT+TGG + chr8.4:15020661-15020680 None:intergenic 45.0%
CTGTTCTTCACCACATTGGT+TGG - chr8.4:15021147-15021166 MS.gene59912:CDS 45.0%
GAAGCTGAGACTGTGATGTT+CGG - chr8.4:15020553-15020572 MS.gene59912:CDS 45.0%
GCCATTGGCATCTTCTTCTT+GGG + chr8.4:15021019-15021038 None:intergenic 45.0%
GGAAAGTTAAGAACAGCCTC+TGG + chr8.4:15020502-15020521 None:intergenic 45.0%
TGCCATTGGCATCTTCTTCT+TGG + chr8.4:15021020-15021039 None:intergenic 45.0%
TGGCTTACACAGAAGCCAAA+GGG - chr8.4:15021373-15021392 MS.gene59912:CDS 45.0%
TTGAAGATAGCGACGGAGTT+GGG + chr8.4:15020660-15020679 None:intergenic 45.0%
TTGGCTTACACAGAAGCCAA+AGG - chr8.4:15021372-15021391 MS.gene59912:CDS 45.0%
! AAGGGCTTTTCTCCTTCACA+GGG + chr8.4:15021491-15021510 None:intergenic 45.0%
! TCTGATGTTGGAAGTACGAG+AGG + chr8.4:15021120-15021139 None:intergenic 45.0%
!! CATAGGAATTAGGATTGGCC+TGG + chr8.4:15020789-15020808 None:intergenic 45.0%
AGCTACAACCTAGGTGGGAT+GGG - chr8.4:15020718-15020737 MS.gene59912:CDS 50.0%
CAGGACAATCAACCCTGTGA+AGG - chr8.4:15021476-15021495 MS.gene59912:CDS 50.0%
CATGGCATATGGAGCCATCA+AGG - chr8.4:15021298-15021317 MS.gene59912:CDS 50.0%
CTGTGAAGGAGAAAAGCCCT+TGG - chr8.4:15021490-15021509 MS.gene59912:CDS 50.0%
GCAGCTATCACCATGGCATA+TGG - chr8.4:15021287-15021306 MS.gene59912:CDS 50.0%
TCAAGTGCAACAGTGCAGTG+TGG - chr8.4:15021445-15021464 MS.gene59912:CDS 50.0%
TGCGAACCGTGGTGATCAAT+TGG + chr8.4:15020957-15020976 None:intergenic 50.0%
TTCTTGAGAGATCGGGACTC+GGG - chr8.4:15020461-15020480 MS.gene59912:CDS 50.0%
! CAAGGGCTTTTCTCCTTCAC+AGG + chr8.4:15021492-15021511 None:intergenic 50.0%
! CATTTTTGCATCCATGCCGG+AGG - chr8.4:15021231-15021250 MS.gene59912:CDS 50.0%
! CTTGATGGCTCCATATGCCA+TGG + chr8.4:15021300-15021319 None:intergenic 50.0%
AAACAGCTCTACCTCCGGCA+TGG + chr8.4:15021245-15021264 None:intergenic 55.0%
CACCACGGTTCGCACTAACA+AGG - chr8.4:15020963-15020982 MS.gene59912:CDS 55.0%
GAGCTACAACCTAGGTGGGA+TGG - chr8.4:15020717-15020736 MS.gene59912:CDS 55.0%
GTGCAACAGTGCAGTGTGGA+AGG - chr8.4:15021449-15021468 MS.gene59912:CDS 55.0%
GTTTCGAATGGGAGGAGCTG+TGG - chr8.4:15020888-15020907 MS.gene59912:CDS 55.0%
TCTTGAGAGATCGGGACTCG+GGG - chr8.4:15020462-15020481 MS.gene59912:CDS 55.0%
! TGCCGGAGGTAGAGCTGTTT+TGG - chr8.4:15021245-15021264 MS.gene59912:CDS 55.0%
!! AGCCTTGTTAGTGCGAACCG+TGG + chr8.4:15020968-15020987 None:intergenic 55.0%
CACTGCAACCCATCCCACCT+AGG + chr8.4:15020729-15020748 None:intergenic 60.0%
GTGCAGTGTGGAAGGCTCTC+AGG - chr8.4:15021457-15021476 MS.gene59912:CDS 60.0%
!! AGGTGGGATGGGTTGCAGTG+CGG - chr8.4:15020729-15020748 MS.gene59912:CDS 60.0%
!! GGTGGGATGGGTTGCAGTGC+GGG - chr8.4:15020730-15020749 MS.gene59912:CDS 65.0%
!! GTGGGATGGGTTGCAGTGCG+GGG - chr8.4:15020731-15020750 MS.gene59912:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 15020400 15021551 15020400 ID=MS.gene59912
chr8.4 mRNA 15020400 15021551 15020400 ID=MS.gene59912.t1;Parent=MS.gene59912
chr8.4 exon 15020400 15021551 15020400 ID=MS.gene59912.t1.exon1;Parent=MS.gene59912.t1
chr8.4 CDS 15020400 15021551 15020400 ID=cds.MS.gene59912.t1;Parent=MS.gene59912.t1
Gene Sequence

>MS.gene59912

ATGGATCAGTCTAGGATGATCAGTACTTTTACGGAGGAAAATCTTGAATTTCAGCGAAAGATTCTTGAGAGATCGGGACTCGGGGAATCTACTTATCTTCCAGAGGCTGTTCTTAACTTTCCTCCTAATCCTTCAATGAAAGAAGCTAGAAAAGAAGCTGAGACTGTGATGTTCGGTGCCATTGATGAGCTATTTAGTAAGACCACAGTAAAGCCTAAAGATATAGGAATTCTGATTGTAAATTGTAGCTTGTTCAACCCAACTCCGTCGCTATCTTCAATGATTGTCAATCATTACAAGCTTCGAGGGAATATAAAGAGCTACAACCTAGGTGGGATGGGTTGCAGTGCGGGGCTGATCTCGATTGATCTTGCTAAAGATCTTCTCCAGGCCAATCCTAATTCCTATGCATTGGTCATTAGCATGGAGAATATCACATTGAATTGGTATTTTGGAAACGATCGGTCGAAACTTGTTTCTAATTGTTTGTTTCGAATGGGAGGAGCTGTGGTTCTGCTTTCCAATAAAACCTCAGACAGAAGAAGATCAAAATACCAATTGATCACCACGGTTCGCACTAACAAGGCTTCTGATGACAAGTGTTTTAGCTGTGTAACCCAAGAAGAAGATGCCAATGGCAATATTGGTGTTACCTTGTCAAAAGATCTTATGGCAGTTGCCGGTGATGCTTTAAAAACTAATATCACTACGCTAGGGCCTCTCGTACTTCCAACATCAGAACAACTACTGTTCTTCACCACATTGGTTGGGAAGAAACTTTTCAAGATGAAGATAAAACCTTATATTCCTGATTTCAAGCTAGCTTTTGAACATTTTTGCATCCATGCCGGAGGTAGAGCTGTTTTGGATGAACTGGAGAAAAACTTGCAGCTATCACCATGGCATATGGAGCCATCAAGGATGACACTTTATCGTTTTGGAAACACATCTAGCAGTTCACTTTGGTATGAATTGGCTTACACAGAAGCCAAAGGGAGAATTAAGAAGGGAGATAGAACATGGCAAATAGCATTTGGTTCTGGATTCAAGTGCAACAGTGCAGTGTGGAAGGCTCTCAGGACAATCAACCCTGTGAAGGAGAAAAGCCCTTGGATAGATGAGATTGACCAGTTTCCTGTTGATGTTCCAAAG
Protein sequence

>MS.gene59912.t1

MDQSRMISTFTEENLEFQRKILERSGLGESTYLPEAVLNFPPNPSMKEARKEAETVMFGAIDELFSKTTVKPKDIGILIVNCSLFNPTPSLSSMIVNHYKLRGNIKSYNLGGMGCSAGLISIDLAKDLLQANPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAVVLLSNKTSDRRRSKYQLITTVRTNKASDDKCFSCVTQEEDANGNIGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFTTLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPVKEKSPWIDEIDQFPVDVPK