AlfalfaGEDB | MS.gene60189

M. sativa cultivar XinJiangDaYe / MS.gene60189

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60189.t1	XP_024636505.1	91.2	114	10	0	1	114	16	129	2.50E-50	208

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60189.t1	G7JF71	91.2	114	10	0	1	114	16	129	1.8e-50	208.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051388	MS.gene60189	0.809549	1.79E-50	-1.69E-46
MS.gene051719	MS.gene60189	0.800765	1.24E-48	-1.69E-46
MS.gene052519	MS.gene60189	0.800579	1.35E-48	-1.69E-46
MS.gene054775	MS.gene60189	0.809903	1.50E-50	-1.69E-46
MS.gene055466	MS.gene60189	0.808646	2.80E-50	-1.69E-46
MS.gene055608	MS.gene60189	0.831731	1.41E-55	-1.69E-46
MS.gene055818	MS.gene60189	0.814372	1.59E-51	-1.69E-46
MS.gene060429	MS.gene60189	0.832754	7.89E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60189.t1	MTR_4g097260	91.228	114	10	0	1	114	16	129	1.08e-73	216
MS.gene60189.t1	MTR_4g097250	57.273	110	33	6	1	106	17	116	2.01e-29	103

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATATGTTTTAATTATAAC+AGG	+	32965:74516-74535	MS.gene60189:intron	10.0%
!!	ATATTTATTAACTAAAGTGA+AGG	-	32965:74704-74723	None:intergenic	15.0%
!	GTAAATACTCTTCAGATTAT+AGG	+	32965:74737-74756	MS.gene60189:intron	25.0%
	TGAAGATGATGACAATATCA+AGG	+	32965:74441-74460	MS.gene60189:CDS	30.0%
!	CTAATTCACTTACACTGTTT+TGG	-	32965:74669-74688	None:intergenic	30.0%
!!	TCTGCTTCTAGAATAAAGAA+GGG	-	32965:74473-74492	None:intergenic	30.0%
!!	TTCTGCTTCTAGAATAAAGA+AGG	-	32965:74474-74493	None:intergenic	30.0%
	AGGAAAAATCACGAGAACAT+TGG	-	32965:74186-74205	None:intergenic	35.0%
	ATGATTTCAAGGAACTCGTA+AGG	+	32965:74299-74318	MS.gene60189:CDS	35.0%
	CTTGAAATCATCATCACTTG+TGG	-	32965:74290-74309	None:intergenic	35.0%
	GATGAAAATCGTGTTGAGTT+AGG	+	32965:74343-74362	MS.gene60189:CDS	35.0%
	TGATTTCAAGGAACTCGTAA+GGG	+	32965:74300-74319	MS.gene60189:CDS	35.0%
!	CACAAGTGATGATGATTTCA+AGG	+	32965:74288-74307	MS.gene60189:CDS	35.0%
!!	CTGCTTCTAGAATAAAGAAG+GGG	-	32965:74472-74491	None:intergenic	35.0%
	AAGGTTCCTGGTAAAGGTAA+AGG	+	32965:74138-74157	MS.gene60189:CDS	40.0%
	ACATGTCCTTTACCTTTACC+AGG	-	32965:74147-74166	None:intergenic	40.0%
	ACCATTAAGGTTCCTGGTAA+AGG	+	32965:74132-74151	MS.gene60189:CDS	40.0%
	ACCTTTACCAGGAACCTTAA+TGG	-	32965:74136-74155	None:intergenic	40.0%
	CATATTTGCTCTACTGCGAA+TGG	-	32965:74503-74522	None:intergenic	40.0%
	GTAAAGGACATGTACGTCAA+TGG	+	32965:74154-74173	MS.gene60189:CDS	40.0%
	TATGTAGATCCTGCAACCAT+GGG	+	32965:74205-74224	MS.gene60189:CDS	40.0%
	TCAGATTATAGGTGAAGCGT+GGG	+	32965:74748-74767	MS.gene60189:intron	40.0%
	TTCAGATTATAGGTGAAGCG+TGG	+	32965:74747-74766	MS.gene60189:intron	40.0%
	AACACTGAAGCTCCTAGGAA+AGG	-	32965:74251-74270	None:intergenic	45.0%
	CATGGTTGCAGGATCTACAT+AGG	-	32965:74206-74225	None:intergenic	45.0%
	CGCAACTTTACTCCTTTCCT+AGG	+	32965:74236-74255	MS.gene60189:CDS	45.0%
	CTATGTAGATCCTGCAACCA+TGG	+	32965:74204-74223	MS.gene60189:CDS	45.0%
	GAGTTAACACTGAAGCTCCT+AGG	-	32965:74256-74275	None:intergenic	45.0%
	GGAAAGGAGTAAAGTTGCGT+AGG	-	32965:74235-74254	None:intergenic	45.0%
	AAGTTGCGTAGGACATCCCA+TGG	-	32965:74224-74243	None:intergenic	50.0%
!	GTCGCAGTGTTGGAATTGGA+AGG	+	32965:74392-74411	MS.gene60189:CDS	50.0%
!!	CGAAAGCGATGAAAGTGCCT+CGG	+	32965:74368-74387	MS.gene60189:CDS	50.0%
!!	GAAGGCACCATTAAGGTTCC+TGG	+	32965:74126-74145	MS.gene60189:CDS	50.0%
	ATTCCAACACTGCGACTCCG+AGG	-	32965:74388-74407	None:intergenic	55.0%
	GTAGGACATCCCATGGTTGC+AGG	-	32965:74217-74236	None:intergenic	55.0%
	TCGTAAGGGCTGCGTCACTT+AGG	+	32965:74314-74333	MS.gene60189:CDS	55.0%
!	CGGAGTCGCAGTGTTGGAAT+TGG	+	32965:74388-74407	MS.gene60189:CDS	55.0%
	GTGCCTCGGAGTCGCAGTGT+TGG	+	32965:74382-74401	MS.gene60189:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
32965	gene	74124	74775	74124	ID=MS.gene60189
32965	mRNA	74124	74775	74124	ID=MS.gene60189.t1;Parent=MS.gene60189
32965	exon	74124	74462	74124	ID=MS.gene60189.t1.exon1;Parent=MS.gene60189.t1
32965	CDS	74124	74462	74124	ID=cds.MS.gene60189.t1;Parent=MS.gene60189.t1
32965	exon	74752	74775	74752	ID=MS.gene60189.t1.exon2;Parent=MS.gene60189.t1
32965	CDS	74752	74775	74752	ID=cds.MS.gene60189.t1;Parent=MS.gene60189.t1

Gene Sequence

>MS.gene60189

ATGAAGGCACCATTAAGGTTCCTGGTAAAGGTAAAGGACATGTACGTCAATGGCATGATCCAATGTTCTCGTGATTTTTCCTATGTAGATCCTGCAACCATGGGATGTCCTACGCAACTTTACTCCTTTCCTAGGAGCTTCAGTGTTAACTCTACAACATCGACCACAAGTGATGATGATTTCAAGGAACTCGTAAGGGCTGCGTCACTTAGGATCAGAGATGAAAATCGTGTTGAGTTAGGATCGAAAGCGATGAAAGTGCCTCGGAGTCGCAGTGTTGGAATTGGAAGGATTGAAGAAGACGAGATATGTGAGTTTGAAGATGATGACAATATCAAGGTCAAGCCCCTTCTTTATTCTAGAAGCAGAAGTTGTGCCATTCGCAGTAGAGCAAATATGTTTTAATTATAACAGGTAATATTCATTTTACAATTGTTTCTTATGATATTTAAACTCTATTTTAAAATTATAAAGTCAAACTCTTATTATTTTGTTGTCAACAATTATATATGTTTTTATTTGTCATATATATAATAGAACTTCCAAAACAGTGTAAGTGAATTAGTGTTATATATATCCTTCACTTTAGTTAATAAATATTGATGTTAGTCTCGTAAATACTCTTCAGATTATAGGTGAAGCGTGGGTTTGA

Protein sequence

>MS.gene60189.t1

MKAPLRFLVKVKDMYVNGMIQCSRDFSYVDPATMGCPTQLYSFPRSFSVNSTTSTTSDDDFKELVRAASLRIRDENRVELGSKAMKVPRSRSVGIGRIEEDEICEFEDDDNIKIIGEAWV