AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60320.t1 MTR_4g107230 94.539 293 6 4 1 289 1 287 0.0 556
MS.gene60320.t1 MTR_5g037080 56.757 185 47 5 6 175 19 185 1.93e-49 166
MS.gene60320.t1 MTR_4g100630 57.746 142 52 4 18 155 25 162 2.84e-47 161
MS.gene60320.t1 MTR_2g100930 43.684 190 67 5 3 167 15 189 1.99e-42 149
MS.gene60320.t1 MTR_0036s0260 91.176 68 6 0 88 155 28 95 3.49e-38 134
MS.gene60320.t1 MTR_6g092540 51.020 147 56 4 13 152 24 161 1.15e-37 135
MS.gene60320.t1 MTR_2g090305 88.235 68 8 0 88 155 28 95 6.17e-36 127
MS.gene60320.t1 MTR_3g462790 61.702 94 32 1 76 165 135 228 2.53e-34 127
MS.gene60320.t1 MTR_8g101650 73.239 71 18 1 82 152 99 168 5.20e-34 125
MS.gene60320.t1 MTR_4g111975 71.622 74 21 0 81 154 131 204 6.36e-34 125
MS.gene60320.t1 MTR_1g111830 59.223 103 40 2 81 181 117 219 2.26e-33 122
MS.gene60320.t1 MTR_5g069710 66.667 81 27 0 78 158 122 202 1.72e-32 122
MS.gene60320.t1 MTR_7g067080 49.138 116 56 1 76 188 128 243 8.19e-32 120
MS.gene60320.t1 MTR_5g081860 61.176 85 31 1 76 158 113 197 8.50e-30 114
MS.gene60320.t1 MTR_3g104370 53.333 90 39 1 69 155 72 161 4.07e-27 105
MS.gene60320.t1 MTR_8g063600 60.811 74 27 1 82 153 100 173 6.48e-25 101
MS.gene60320.t1 MTR_5g027570 32.500 160 78 4 48 177 27 186 8.42e-24 97.1
MS.gene60320.t1 MTR_5g027550 45.631 103 49 3 70 166 60 161 1.14e-21 91.3
MS.gene60320.t1 MTR_5g088010 44.944 89 43 2 82 164 54 142 2.69e-20 88.2
MS.gene60320.t1 MTR_8g063870 44.545 110 51 3 90 189 94 203 4.32e-20 87.8
MS.gene60320.t1 MTR_1g048660 56.250 64 28 0 89 152 13 76 1.89e-19 81.6
MS.gene60320.t1 MTR_1g033620 46.875 96 46 1 104 194 21 116 2.62e-19 85.1
MS.gene60320.t1 MTR_5g088060 48.148 81 36 2 90 164 274 354 1.42e-18 85.5
MS.gene60320.t1 MTR_5g488160 48.148 81 36 2 90 164 274 354 1.42e-18 85.5
MS.gene60320.t1 MTR_4g015130 64.286 56 20 0 98 153 3 58 3.12e-18 77.8
MS.gene60320.t1 MTR_1g083180 51.429 70 30 2 90 156 63 131 4.43e-15 72.4
MS.gene60320.t1 MTR_5g075760 36.752 117 64 4 59 173 78 186 2.04e-14 71.2
MS.gene60320.t1 MTR_3g070110 48.611 72 30 1 90 154 97 168 4.15e-13 67.4
MS.gene60320.t1 MTR_5g075790 43.023 86 41 3 90 173 115 194 6.78e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60320.t1 AT1G74840 56.579 228 78 8 8 229 16 228 8.76e-60 191
MS.gene60320.t1 AT1G74840 63.542 192 60 6 8 194 16 202 1.57e-59 190
MS.gene60320.t1 AT1G19000 44.051 311 123 10 1 289 4 285 8.05e-54 177
MS.gene60320.t1 AT1G19000 44.051 311 123 10 1 289 4 285 8.05e-54 177
MS.gene60320.t1 AT5G47390 54.658 161 63 3 18 173 25 180 8.59e-52 174
MS.gene60320.t1 AT1G70000 61.988 171 43 6 5 168 23 178 3.41e-50 167
MS.gene60320.t1 AT1G70000 61.988 171 43 6 5 168 23 178 3.41e-50 167
MS.gene60320.t1 AT3G16350 44.550 211 87 7 18 207 49 250 1.43e-39 142
MS.gene60320.t1 AT5G58900 51.304 115 50 1 76 190 129 237 3.43e-34 125
MS.gene60320.t1 AT1G49010 72.973 74 20 0 81 154 127 200 4.67e-34 126
MS.gene60320.t1 AT2G38090 58.763 97 40 0 65 161 118 214 7.86e-34 125
MS.gene60320.t1 AT5G04760 64.368 87 30 1 76 161 87 173 1.71e-33 122
MS.gene60320.t1 AT5G61620 39.362 188 83 6 4 177 22 192 4.37e-33 124
MS.gene60320.t1 AT5G08520 70.270 74 22 0 81 154 111 184 8.94e-33 122
MS.gene60320.t1 AT5G56840 57.282 103 32 3 63 164 73 164 6.10e-32 118
MS.gene60320.t1 AT5G05790 61.250 80 31 0 75 154 118 197 2.73e-29 112
MS.gene60320.t1 AT5G05790 61.250 80 31 0 75 154 118 197 2.73e-29 112
MS.gene60320.t1 AT5G01200 64.865 74 26 0 81 154 139 212 2.98e-29 112
MS.gene60320.t1 AT3G11280 61.250 80 31 0 75 154 114 193 4.03e-29 112
MS.gene60320.t1 AT3G11280 61.250 80 31 0 75 154 114 193 4.03e-29 112
MS.gene60320.t1 AT3G10580 60.000 70 26 1 84 153 91 158 5.56e-23 95.5
MS.gene60320.t1 AT3G10580 60.000 70 26 1 84 153 91 158 8.71e-23 95.5
MS.gene60320.t1 AT4G09450 50.000 94 46 1 69 161 71 164 1.12e-22 93.2
MS.gene60320.t1 AT5G23650 58.333 72 30 0 82 153 114 185 3.00e-22 95.1
MS.gene60320.t1 AT3G10590 46.512 86 45 1 76 161 99 183 3.73e-19 84.0

Find 67 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTTCGCGGTCGCGGTTTC+TGG 0.130907 8.2:+18805103 None:intergenic
AACTCATATACTGACATAAA+AGG 0.288173 8.2:+18804131 None:intergenic
ATCAGACACAATGGAAGCTT+TGG 0.326101 8.2:+18803995 None:intergenic
GGAAGAGCACAAGCTGTTCT+TGG 0.356599 8.2:-18804960 MS.gene60320:CDS
TTGACCTGTTCTTCCTCCAT+TGG 0.357105 8.2:+18804215 None:intergenic
TCTGAAACAACAAAAGGAAT+TGG 0.370883 8.2:+18804020 None:intergenic
TCGAACCTCGTTTACGTTCG+CGG 0.379501 8.2:+18805090 None:intergenic
GTCATCGGCGGAGGCGTAAC+CGG 0.383661 8.2:+18805145 None:intergenic
CTCGTTTACGTTCGCGGTCG+CGG 0.408987 8.2:+18805096 None:intergenic
TTGGTTGGATTGCAGAAAGT+TGG 0.429183 8.2:-18804941 MS.gene60320:CDS
AATTGGATTGAATAGATTGT+TGG 0.429941 8.2:+18804037 None:intergenic
TTTATGTCAGTATATGAGTT+GGG 0.444220 8.2:-18804128 MS.gene60320:CDS
ACCGCAGACTCCACCGTCTC+CGG 0.449707 8.2:-18805314 MS.gene60320:CDS
AATTCCAATGGAGGAAGAAC+AGG 0.463202 8.2:-18804219 MS.gene60320:CDS
TCAGACACAATGGAAGCTTT+GGG 0.470464 8.2:+18803996 None:intergenic
AGAAAGTTGGAAAAGGTGAT+TGG 0.477943 8.2:-18804928 MS.gene60320:CDS
TGGAGGGTCAATGGATGAAC+TGG 0.479134 8.2:+18803959 None:intergenic
GGAAAGTGTTGGAGGGTCAA+TGG 0.479524 8.2:+18803950 None:intergenic
GAGCACAAGCTGTTCTTGGT+TGG 0.483963 8.2:-18804956 MS.gene60320:CDS
CCAATGGAAGAACTCACTCT+TGG 0.488703 8.2:-18804089 MS.gene60320:CDS
AGGAACGGCGTCATCGGCGG+AGG 0.501551 8.2:+18805136 None:intergenic
TCCGGCGAATTCATGCTCTT+CGG 0.514098 8.2:-18805296 MS.gene60320:CDS
CCAAGAGTGAGTTCTTCCAT+TGG 0.515535 8.2:+18804089 None:intergenic
GAGCATGAATTCGCCGGAGA+CGG 0.519327 8.2:+18805301 None:intergenic
TTTCCTTCTCGTCCGATCAA+AGG 0.521674 8.2:-18803920 MS.gene60320:CDS
GACCCTCCAACACTTTCCCT+CGG 0.522607 8.2:-18803945 MS.gene60320:CDS
TTGGGATCTGAAACAACAAA+AGG 0.525424 8.2:+18804014 None:intergenic
TGGATCAGGGATTCCGTGGA+CGG 0.525462 8.2:-18804984 MS.gene60320:intron
TGATGATGTCTTCCTTTGAT+CGG 0.527840 8.2:+18803908 None:intergenic
ATGATGTTGTTGTTGTCTTG+AGG 0.532951 8.2:+18805203 None:intergenic
GGTGGTGATATCAAAGAGAC+TGG 0.540239 8.2:+18804796 None:intergenic
TTGTGCTCTTCCTCCGTCCA+CGG 0.546086 8.2:+18804971 None:intergenic
GGATTGCAGAAAGTTGGAAA+AGG 0.553347 8.2:-18804935 MS.gene60320:CDS
AGTCCGAGGGAAAGTGTTGG+AGG 0.562456 8.2:+18803942 None:intergenic
TTCGCGGTCGCGGTTTCTGG+CGG 0.563265 8.2:+18805106 None:intergenic
CATGAATTCGCCGGAGACGG+TGG 0.565729 8.2:+18805304 None:intergenic
TCAGGTATCTGCAATTCCAA+TGG 0.575185 8.2:-18804231 MS.gene60320:intron
CTTCCTTTGATCGGACGAGA+AGG 0.575650 8.2:+18803917 None:intergenic
GCCGGAGACGGTGGAGTCTG+CGG 0.589898 8.2:+18805313 None:intergenic
TTGAGGAACGGCGTCATCGG+CGG 0.592610 8.2:+18805133 None:intergenic
TATCAAAGAGACTGGATCTA+CGG 0.592657 8.2:+18804804 None:intergenic
CGTTAATGAGAGTACTCCAA+TGG 0.593695 8.2:-18804105 MS.gene60320:CDS
TCCGAAGAGCATGAATTCGC+CGG 0.594213 8.2:+18805295 None:intergenic
AGACAACAACAACATCATCA+AGG 0.604820 8.2:-18805198 MS.gene60320:CDS
AACAAAGACGTTATCACCGC+CGG 0.612643 8.2:-18805164 MS.gene60320:CDS
GTGATTGGAGAGGTATCTCA+AGG 0.614661 8.2:-18804913 MS.gene60320:CDS
AATGGATGAACTGGAACTAG+AGG 0.623042 8.2:+18803968 None:intergenic
GAAGAACTCACTCTTGGACA+AGG 0.624406 8.2:-18804083 MS.gene60320:CDS
ATCGGCGGAGGCGTAACCGG+CGG 0.626944 8.2:+18805148 None:intergenic
CAGAAAAGTTACCGTGTCGG+TGG 0.629241 8.2:+18804778 None:intergenic
GGCGATTGAGATTACTTCGG+CGG 0.629813 8.2:+18804831 None:intergenic
CGCGACCGCGAACGTAAACG+AGG 0.635630 8.2:-18805095 MS.gene60320:intron
CTTTGATATCACCACCGACA+CGG 0.638033 8.2:-18804789 MS.gene60320:intron
GTCCGAGGGAAAGTGTTGGA+GGG 0.638496 8.2:+18803943 None:intergenic
GAAAGTCCGAGGGAAAGTGT+TGG 0.638503 8.2:+18803939 None:intergenic
TGCCAGAAAAGTTACCGTGT+CGG 0.638678 8.2:+18804775 None:intergenic
CGGACGAGAAGGAAAGTCCG+AGG 0.639721 8.2:+18803928 None:intergenic
GACGGCGATTGAGATTACTT+CGG 0.641222 8.2:+18804828 None:intergenic
GGTATCTGCAATTCCAATGG+AGG 0.648622 8.2:-18804228 MS.gene60320:CDS
AGAGGTGATATCAGACACAA+TGG 0.652354 8.2:+18803986 None:intergenic
GGACGAGAAGGAAAGTCCGA+GGG 0.654533 8.2:+18803929 None:intergenic
GTTGGAAAAGGTGATTGGAG+AGG 0.659248 8.2:-18804923 MS.gene60320:CDS
GGAGACGGTGGAGTCTGCGG+TGG 0.660956 8.2:+18805316 None:intergenic
ATCAGGGATTCCGTGGACGG+AGG 0.665588 8.2:-18804981 MS.gene60320:intron
GAAAACAAGAACACCTACGC+AGG 0.669459 8.2:-18804882 MS.gene60320:CDS
AGAGACTGGATCTACGGCGA+CGG 0.684123 8.2:+18804810 None:intergenic
GCATGACTTGCAACCTGCGT+AGG 0.689624 8.2:+18804869 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTCTCTCTTATTTAT+TGG - chr8.2:18804513-18804532 MS.gene60320:intron 15.0%
!!! TTTTTTTTTTTGTTTTTGTG+TGG - chr8.2:18804604-18804623 MS.gene60320:intron 15.0%
!! AAGGAAACAATAAAATAGAA+TGG - chr8.2:18804572-18804591 MS.gene60320:intron 20.0%
!! AATGCTATTAAAGATTGTAA+AGG - chr8.2:18804553-18804572 MS.gene60320:intron 20.0%
!! ATAAGATATATATCAACTCT+TGG + chr8.2:18804736-18804755 None:intergenic 20.0%
! AACTCATATACTGACATAAA+AGG + chr8.2:18805052-18805071 None:intergenic 25.0%
! AATTGGATTGAATAGATTGT+TGG + chr8.2:18805146-18805165 None:intergenic 25.0%
! AGATTTCTTTACAACTACAA+AGG + chr8.2:18804634-18804653 None:intergenic 25.0%
! GAAATCTAACAAAACTAGAA+TGG - chr8.2:18804647-18804666 MS.gene60320:intron 25.0%
! GAGAGTGATATAAGATTAAT+AGG - chr8.2:18804669-18804688 MS.gene60320:intron 25.0%
! TAATCAATAGAGTAGGATTA+TGG - chr8.2:18804472-18804491 MS.gene60320:intron 25.0%
! TAGTTACTAATCAATAGAGT+AGG - chr8.2:18804465-18804484 MS.gene60320:intron 25.0%
! TTTATGTCAGTATATGAGTT+GGG - chr8.2:18805052-18805071 MS.gene60320:intron 25.0%
!! CTTATAATAGTTGATGTATC+TGG - chr8.2:18804751-18804770 MS.gene60320:intron 25.0%
!! TTTTATGTCAGTATATGAGT+TGG - chr8.2:18805051-18805070 MS.gene60320:intron 25.0%
!!! GTACTAAAAGTTGATGTATT+TGG - chr8.2:18804817-18804836 MS.gene60320:CDS 25.0%
!!! GTGATTATCGTTATTGATTT+TGG - chr8.2:18804176-18804195 MS.gene60320:CDS 25.0%
!!! TTATCTCCATTTTTGAAACA+TGG + chr8.2:18805316-18805335 None:intergenic 25.0%
AACAACTTTGTGTTTATGTC+AGG - chr8.2:18804931-18804950 MS.gene60320:CDS 30.0%
ATGCATTTCAAAGAGTTTAC+TGG - chr8.2:18804710-18804729 MS.gene60320:intron 30.0%
TTGTTTATACTTCGTAACAG+AGG + chr8.2:18804792-18804811 None:intergenic 30.0%
! TCTGAAACAACAAAAGGAAT+TGG + chr8.2:18805163-18805182 None:intergenic 30.0%
!!! ATCGTTATTGATTTTGGATC+AGG - chr8.2:18804182-18804201 MS.gene60320:CDS 30.0%
!!! TCCATTGATTTTTCTAGCTT+CGG + chr8.2:18805026-18805045 None:intergenic 30.0%
!!! TCGTTATTGATTTTGGATCA+GGG - chr8.2:18804183-18804202 MS.gene60320:CDS 30.0%
AGAAAGTTGGAAAAGGTGAT+TGG - chr8.2:18804252-18804271 MS.gene60320:intron 35.0%
AGACAACAACAACATCATCA+AGG - chr8.2:18803982-18804001 MS.gene60320:CDS 35.0%
GCAATGCCATGTTTCAAAAA+TGG - chr8.2:18805307-18805326 MS.gene60320:CDS 35.0%
TATCAAAGAGACTGGATCTA+CGG + chr8.2:18804379-18804398 None:intergenic 35.0%
TTCGATCAATCTCTTCAATC+TGG - chr8.2:18804114-18804133 MS.gene60320:CDS 35.0%
! ATGATGTTGTTGTTGTCTTG+AGG + chr8.2:18803980-18803999 None:intergenic 35.0%
! TGATGATGTCTTCCTTTGAT+CGG + chr8.2:18805275-18805294 None:intergenic 35.0%
! TTGGGATCTGAAACAACAAA+AGG + chr8.2:18805169-18805188 None:intergenic 35.0%
!!! ATTGATTTTTCTAGCTTCGG+GGG + chr8.2:18805023-18805042 None:intergenic 35.0%
!!! CATTGATTTTTCTAGCTTCG+GGG + chr8.2:18805024-18805043 None:intergenic 35.0%
!!! CCATTGATTTTTCTAGCTTC+GGG + chr8.2:18805025-18805044 None:intergenic 35.0%
AATGGATGAACTGGAACTAG+AGG + chr8.2:18805215-18805234 None:intergenic 40.0%
AATTCCAATGGAGGAAGAAC+AGG - chr8.2:18804961-18804980 MS.gene60320:CDS 40.0%
AGAGGTGATATCAGACACAA+TGG + chr8.2:18805197-18805216 None:intergenic 40.0%
ATCAGACACAATGGAAGCTT+TGG + chr8.2:18805188-18805207 None:intergenic 40.0%
CCCGAAGCTAGAAAAATCAA+TGG - chr8.2:18805022-18805041 MS.gene60320:intron 40.0%
GGATTGCAGAAAGTTGGAAA+AGG - chr8.2:18804245-18804264 MS.gene60320:intron 40.0%
TCAGACACAATGGAAGCTTT+GGG + chr8.2:18805187-18805206 None:intergenic 40.0%
TCAGGTATCTGCAATTCCAA+TGG - chr8.2:18804949-18804968 MS.gene60320:CDS 40.0%
TTGGTTGGATTGCAGAAAGT+TGG - chr8.2:18804239-18804258 MS.gene60320:intron 40.0%
!! CGTTAATGAGAGTACTCCAA+TGG - chr8.2:18805075-18805094 MS.gene60320:intron 40.0%
AACAAAGACGTTATCACCGC+CGG - chr8.2:18804016-18804035 MS.gene60320:CDS 45.0%
CCAAGAGTGAGTTCTTCCAT+TGG + chr8.2:18805094-18805113 None:intergenic 45.0%
CCAATGGAAGAACTCACTCT+TGG - chr8.2:18805091-18805110 MS.gene60320:intron 45.0%
CTTTGATATCACCACCGACA+CGG - chr8.2:18804391-18804410 MS.gene60320:intron 45.0%
GAAAACAAGAACACCTACGC+AGG - chr8.2:18804298-18804317 MS.gene60320:intron 45.0%
GAAGAACTCACTCTTGGACA+AGG - chr8.2:18805097-18805116 MS.gene60320:CDS 45.0%
GACGGCGATTGAGATTACTT+CGG + chr8.2:18804355-18804374 None:intergenic 45.0%
GGTATCTGCAATTCCAATGG+AGG - chr8.2:18804952-18804971 MS.gene60320:CDS 45.0%
GGTGGTGATATCAAAGAGAC+TGG + chr8.2:18804387-18804406 None:intergenic 45.0%
GTTGGAAAAGGTGATTGGAG+AGG - chr8.2:18804257-18804276 MS.gene60320:intron 45.0%
TGCCAGAAAAGTTACCGTGT+CGG + chr8.2:18804408-18804427 None:intergenic 45.0%
TTGACCTGTTCTTCCTCCAT+TGG + chr8.2:18804968-18804987 None:intergenic 45.0%
TTTCCTTCTCGTCCGATCAA+AGG - chr8.2:18805260-18805279 MS.gene60320:CDS 45.0%
! ATTTTGGATCAGGGATTCCG+TGG - chr8.2:18804192-18804211 MS.gene60320:CDS 45.0%
!! GTGATTGGAGAGGTATCTCA+AGG - chr8.2:18804267-18804286 MS.gene60320:intron 45.0%
CAGAAAAGTTACCGTGTCGG+TGG + chr8.2:18804405-18804424 None:intergenic 50.0%
CTTCCTTTGATCGGACGAGA+AGG + chr8.2:18805266-18805285 None:intergenic 50.0%
GAGCACAAGCTGTTCTTGGT+TGG - chr8.2:18804224-18804243 MS.gene60320:CDS 50.0%
GGCGATTGAGATTACTTCGG+CGG + chr8.2:18804352-18804371 None:intergenic 50.0%
TCCGGCGAATTCATGCTCTT+CGG - chr8.2:18803884-18803903 MS.gene60320:CDS 50.0%
TCGAACCTCGTTTACGTTCG+CGG + chr8.2:18804093-18804112 None:intergenic 50.0%
TGGAGGGTCAATGGATGAAC+TGG + chr8.2:18805224-18805243 None:intergenic 50.0%
! CACCGACACGGTAACTTTTC+TGG - chr8.2:18804403-18804422 MS.gene60320:intron 50.0%
! GAAAGTCCGAGGGAAAGTGT+TGG + chr8.2:18805244-18805263 None:intergenic 50.0%
! GGAAGAGCACAAGCTGTTCT+TGG - chr8.2:18804220-18804239 MS.gene60320:CDS 50.0%
! TCCGAAGAGCATGAATTCGC+CGG + chr8.2:18803888-18803907 None:intergenic 50.0%
!! GGAAAGTGTTGGAGGGTCAA+TGG + chr8.2:18805233-18805252 None:intergenic 50.0%
!!! GTTTTGAGGAACGGCGTCAT+CGG + chr8.2:18804053-18804072 None:intergenic 50.0%
!!! TCTGGCGGAGTTTTGAGGAA+CGG + chr8.2:18804062-18804081 None:intergenic 50.0%
AGAGACTGGATCTACGGCGA+CGG + chr8.2:18804373-18804392 None:intergenic 55.0%
GACCCTCCAACACTTTCCCT+CGG - chr8.2:18805235-18805254 MS.gene60320:CDS 55.0%
GAGCATGAATTCGCCGGAGA+CGG + chr8.2:18803882-18803901 None:intergenic 55.0%
GGACGAGAAGGAAAGTCCGA+GGG + chr8.2:18805254-18805273 None:intergenic 55.0%
TGGATCAGGGATTCCGTGGA+CGG - chr8.2:18804196-18804215 MS.gene60320:CDS 55.0%
TTGTGCTCTTCCTCCGTCCA+CGG + chr8.2:18804212-18804231 None:intergenic 55.0%
! GCATGACTTGCAACCTGCGT+AGG + chr8.2:18804314-18804333 None:intergenic 55.0%
!! AGTCCGAGGGAAAGTGTTGG+AGG + chr8.2:18805241-18805260 None:intergenic 55.0%
!! GTCCGAGGGAAAGTGTTGGA+GGG + chr8.2:18805240-18805259 None:intergenic 55.0%
!!! CGGTTTCTGGCGGAGTTTTG+AGG + chr8.2:18804067-18804086 None:intergenic 55.0%
ATCAGGGATTCCGTGGACGG+AGG - chr8.2:18804199-18804218 MS.gene60320:CDS 60.0%
CATGAATTCGCCGGAGACGG+TGG + chr8.2:18803879-18803898 None:intergenic 60.0%
CGGACGAGAAGGAAAGTCCG+AGG + chr8.2:18805255-18805274 None:intergenic 60.0%
CTCGTTTACGTTCGCGGTCG+CGG + chr8.2:18804087-18804106 None:intergenic 60.0%
TTGAGGAACGGCGTCATCGG+CGG + chr8.2:18804050-18804069 None:intergenic 60.0%
!! TTCTAGCTTCGGGGGCTGCA+GGG + chr8.2:18805015-18805034 None:intergenic 60.0%
!! TTTCTAGCTTCGGGGGCTGC+AGG + chr8.2:18805016-18805035 None:intergenic 60.0%
ACCGCAGACTCCACCGTCTC+CGG - chr8.2:18803866-18803885 MS.gene60320:CDS 65.0%
ACGTTCGCGGTCGCGGTTTC+TGG + chr8.2:18804080-18804099 None:intergenic 65.0%
CGCGACCGCGAACGTAAACG+AGG - chr8.2:18804085-18804104 MS.gene60320:CDS 65.0%
! GTCATCGGCGGAGGCGTAAC+CGG + chr8.2:18804038-18804057 None:intergenic 65.0%
! TTCGCGGTCGCGGTTTCTGG+CGG + chr8.2:18804077-18804096 None:intergenic 65.0%
AGGAACGGCGTCATCGGCGG+AGG + chr8.2:18804047-18804066 None:intergenic 70.0%
GCCGGAGACGGTGGAGTCTG+CGG + chr8.2:18803870-18803889 None:intergenic 70.0%
GGAGACGGTGGAGTCTGCGG+TGG + chr8.2:18803867-18803886 None:intergenic 70.0%
! ATCGGCGGAGGCGTAACCGG+CGG + chr8.2:18804035-18804054 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 18803848 18805354 18803848 ID=MS.gene60320
chr8.2 mRNA 18803848 18805354 18803848 ID=MS.gene60320.t1;Parent=MS.gene60320
chr8.2 exon 18805096 18805354 18805096 ID=MS.gene60320.t1.exon1;Parent=MS.gene60320.t1
chr8.2 CDS 18805096 18805354 18805096 ID=cds.MS.gene60320.t1;Parent=MS.gene60320.t1
chr8.2 exon 18804790 18804998 18804790 ID=MS.gene60320.t1.exon2;Parent=MS.gene60320.t1
chr8.2 CDS 18804790 18804998 18804790 ID=cds.MS.gene60320.t1;Parent=MS.gene60320.t1
chr8.2 exon 18803848 18804249 18803848 ID=MS.gene60320.t1.exon3;Parent=MS.gene60320.t1
chr8.2 CDS 18803848 18804249 18803848 ID=cds.MS.gene60320.t1;Parent=MS.gene60320.t1
Gene Sequence

>MS.gene60320

ATGTCTTCTGCTTCAACCACCGCAGACTCCACCGTCTCCGGCGAATTCATGCTCTTCGGAGTTAGAGTCGTCGTTGATTCTATGAGAAAGAGTGTCAGTATGAACAATCTCTCACAATACGAACAACAACCTCAAGACAACAACAACATCATCAAGGATGATAATATCAACAAAGACGTTATCACCGCCGGTTACGCCTCCGCCGATGACGCCGTTCCTCAAAACTCCGCCAGAAACCGCGACCGCGAACGTAAACGAGGTTCGAATTCGATCAATCTCTTCAATCTGGATTATATTGTTTTATAATCGCTTTTCATTGAATTGAAACGTGATTATCGTTATTGATTTTGGATCAGGGATTCCGTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGATTGCAGAAAGTTGGAAAAGGTGATTGGAGAGGTATCTCAAGGAACTATGTGAAAACAAGAACACCTACGCAGGTTGCAAGTCATGCTCAAAAGTACTTTCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACCGACACGGTAACTTTTCTGGCAATCTCTTTATAGAAACAGTAAAAGTACTCTATTCAATTAGTTACTAATCAATAGAGTAGGATTATGGTATTGCAAAAATGAGATTTAATTTTCTCTCTTATTTATTGGTTTTCTAATTTTGATTCAATGCTATTAAAGATTGTAAAGGAAACAATAAAATAGAATGGAAATGCAATTTTTTTTTTTTGTTTTTGTGTGGAAATCCTTTGTAGTTGTAAAGAAATCTAACAAAACTAGAATGGAGAGTGATATAAGATTAATAGGTTTATGTTTGTTATCTGAATGCATTTCAAAGAGTTTACTGGCCAAGAGTTGATATATATCTTATAATAGTTGATGTATCTGGACTATAGAGAAATAACCTCTGTTACGAAGTATAAACAAAATGAGTACTAAAAGTTGATGTATTTGGTACAAATTTTGAACTTAATATATTAACTTTCTTTGACTTATTTTTGTTAATATTTTGTTAAGTAGTGTATAATTTACATGATCTGATTCTGAACAACTTTGTGTTTATGTCAGGTATCTGCAATTCCAATGGAGGAAGAACAGGTCAAGAATCAAGATAATGTTTCACAGTGCCCTGCAGCCCCCGAAGCTAGAAAAATCAATGGATTTCCTTTTATGTCAGTATATGAGTTGGGCGTTAATGAGAGTACTCCAATGGAAGAACTCACTCTTGGACAAGGAAATGTGAAACACAATTTTCAAACCAACAATCTATTCAATCCAATTCCTTTTGTTGTTTCAGATCCCAAAGCTTCCATTGTGTCTGATATCACCTCTAGTTCCAGTTCATCCATTGACCCTCCAACACTTTCCCTCGGACTTTCCTTCTCGTCCGATCAAAGGAAGACATCATCAACACATTTACATGCAATGCCATGTTTCAAAAATGGAGATAACATCATAAGTGTTGCTTAA
Protein sequence

>MS.gene60320.t1

MSSASTTADSTVSGEFMLFGVRVVVDSMRKSVSMNNLSQYEQQPQDNNNIIKDDNINKDVITAGYASADDAVPQNSARNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVKNQDNVSQCPAAPEARKINGFPFMSVYELGVNESTPMEELTLGQGNVKHNFQTNNLFNPIPFVVSDPKASIVSDITSSSSSSIDPPTLSLGLSFSSDQRKTSSTHLHAMPCFKNGDNIISVA