AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056776


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056776.t1 MTR_8g030940 95.317 363 17 0 1 363 1 363 0.0 712
MS.gene056776.t1 MTR_4g114110 29.080 337 221 9 21 349 77 403 1.29e-33 129
MS.gene056776.t1 MTR_8g085600 28.797 316 211 8 24 331 76 385 1.44e-31 124
MS.gene056776.t1 MTR_2g019230 28.395 324 213 9 25 337 52 367 4.72e-29 116
MS.gene056776.t1 MTR_3g085570 28.283 297 171 10 21 296 31 306 8.71e-29 115
MS.gene056776.t1 MTR_8g080370 32.922 243 143 8 19 250 45 278 9.96e-29 115
MS.gene056776.t1 MTR_3g094850 29.924 264 161 8 20 276 4 250 7.89e-27 109
MS.gene056776.t1 MTR_7g095220 26.603 312 193 11 25 321 4 294 7.25e-19 87.0
MS.gene056776.t1 MTR_2g008440 28.571 238 153 6 21 252 39 265 2.73e-18 86.3
MS.gene056776.t1 MTR_3g073640 23.276 348 195 13 21 299 39 383 5.45e-18 85.5
MS.gene056776.t1 MTR_4g108280 23.913 322 214 9 2 304 7 316 4.50e-16 79.0
MS.gene056776.t1 MTR_3g108860 23.904 251 168 8 25 270 17 249 9.76e-15 74.7
MS.gene056776.t1 MTR_2g094093 23.239 284 202 6 22 299 17 290 4.50e-12 67.0
MS.gene056776.t1 MTR_4g022400 24.675 231 161 5 25 252 68 288 3.05e-11 64.7
MS.gene056776.t1 MTR_0105s0130 24.658 219 148 5 16 230 80 285 3.74e-11 64.7
MS.gene056776.t1 MTR_0345s0010 24.658 219 148 5 16 230 80 285 4.29e-11 64.3
MS.gene056776.t1 MTR_1330s0010 24.658 219 148 5 16 230 93 298 4.43e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056776.t1 AT3G61350 53.644 343 150 5 25 363 21 358 1.68e-124 362
MS.gene056776.t1 AT3G61350 53.644 343 150 5 25 363 21 358 1.68e-124 362
MS.gene056776.t1 AT1G55270 29.781 319 208 8 24 333 77 388 7.23e-33 127
MS.gene056776.t1 AT2G24540 24.796 367 252 9 12 363 15 372 3.27e-29 116
MS.gene056776.t1 AT1G67480 29.739 306 185 11 3 296 23 310 1.27e-25 106
MS.gene056776.t1 AT1G67480 29.739 306 185 11 3 296 23 310 1.27e-25 106
MS.gene056776.t1 AT1G67480 29.739 306 185 11 3 296 23 310 1.27e-25 106
MS.gene056776.t1 AT1G30090 26.205 332 220 12 16 331 43 365 1.36e-24 103
MS.gene056776.t1 AT1G27420 24.739 287 191 8 20 293 5 279 1.18e-20 92.0
MS.gene056776.t1 AT4G39590 25.000 340 219 7 6 320 18 346 3.24e-20 91.7
MS.gene056776.t1 AT1G55270 27.509 269 179 8 74 333 1 262 1.13e-19 88.6
MS.gene056776.t1 AT1G22040 25.562 356 188 12 9 296 32 378 1.33e-18 87.4
MS.gene056776.t1 AT2G29830 23.599 339 221 13 7 323 9 331 7.81e-18 84.3
MS.gene056776.t1 AT3G63220 24.051 316 196 11 25 321 4 294 3.01e-17 82.4
MS.gene056776.t1 AT3G63220 24.051 316 196 11 25 321 11 301 3.48e-17 82.0
MS.gene056776.t1 AT3G63220 24.051 316 196 11 25 321 11 301 3.48e-17 82.0
MS.gene056776.t1 AT2G21950 26.568 271 176 10 18 276 13 272 5.79e-17 81.6
MS.gene056776.t1 AT1G16250 29.381 194 115 7 25 203 8 194 1.67e-16 80.5
MS.gene056776.t1 AT1G16250 29.381 194 115 7 25 203 8 194 1.67e-16 80.5
MS.gene056776.t1 AT4G39240 29.804 255 149 10 29 270 37 274 4.16e-14 73.2
MS.gene056776.t1 AT5G60570 22.000 300 216 8 11 303 35 323 8.25e-14 72.4
MS.gene056776.t1 AT5G60570 22.000 300 216 8 11 303 35 323 8.25e-14 72.4
MS.gene056776.t1 AT5G60570 22.000 300 216 8 11 303 35 323 8.25e-14 72.4
MS.gene056776.t1 AT3G43710 26.556 241 156 9 29 260 29 257 9.96e-14 72.0
MS.gene056776.t1 AT2G02870 23.151 311 207 10 8 299 100 397 4.41e-13 70.5
MS.gene056776.t1 AT2G02870 23.151 311 207 10 8 299 100 397 4.41e-13 70.5
MS.gene056776.t1 AT2G02870 23.151 311 207 10 8 299 100 397 4.41e-13 70.5
MS.gene056776.t1 AT1G14330 23.077 312 207 11 8 299 72 370 4.66e-13 70.5
MS.gene056776.t1 AT4G39550 24.806 258 160 6 29 261 27 275 8.02e-13 69.3
MS.gene056776.t1 AT4G39290 30.159 189 121 6 29 210 16 200 1.59e-12 68.6
MS.gene056776.t1 AT4G39756 23.765 324 202 10 15 315 9 310 2.60e-12 67.8
MS.gene056776.t1 AT1G61540 24.107 336 211 10 19 320 20 345 3.54e-12 67.8
MS.gene056776.t1 AT4G38940 25.338 296 190 12 25 303 20 301 4.93e-12 67.0
MS.gene056776.t1 AT5G49000 27.668 253 136 10 29 257 25 254 1.88e-11 65.1
MS.gene056776.t1 AT4G23580 26.154 260 147 9 29 261 19 260 2.25e-11 65.1
MS.gene056776.t1 AT4G39580 25.484 310 197 12 29 320 26 319 4.27e-11 64.3
MS.gene056776.t1 AT1G26930 24.675 308 203 10 10 299 56 352 6.87e-11 63.5
MS.gene056776.t1 AT4G34170 24.299 321 197 10 4 320 1 279 7.16e-11 62.8
MS.gene056776.t1 AT4G19870 26.613 248 149 11 31 257 35 270 7.30e-11 63.5
MS.gene056776.t1 AT4G19870 26.613 248 149 11 31 257 35 270 7.30e-11 63.5

Find 89 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAATAAGCTCTTCTTAT+TGG 0.156806 8.4:+66270637 MS.gene056776:CDS
TCAATTTCGGGAACTATATT+AGG 0.164167 8.4:-66272233 None:intergenic
GGTAAAAGCATTTATATTAT+TGG 0.186633 8.4:+66272548 MS.gene056776:CDS
TGCTTTGTGCAGGGATAAAT+TGG 0.190481 8.4:+66270502 MS.gene056776:CDS
ACTATTGAATCTTCAATTTC+GGG 0.198008 8.4:-66272245 None:intergenic
GCAGACACTGACATGGTTTC+AGG 0.199265 8.4:+66272365 MS.gene056776:CDS
AACTATTGAATCTTCAATTT+CGG 0.215275 8.4:-66272246 None:intergenic
TGTTGGTGATATTGGAAATA+TGG 0.261504 8.4:+66272598 MS.gene056776:CDS
AAATATGGGAAGGGCGATAC+TGG 0.279707 8.4:+66272613 MS.gene056776:CDS
GGAAATAAGCTCTTCTTATT+GGG 0.298222 8.4:+66270638 MS.gene056776:CDS
TCATGTTTACTGTTACGTTT+TGG 0.309221 8.4:+66270526 MS.gene056776:CDS
GTTGTTGATGTTGGTGATAT+TGG 0.315849 8.4:+66272590 MS.gene056776:CDS
ACCAACTGCAACAAGTTTGC+AGG 0.334342 8.4:-66272528 None:intergenic
AGCATTTATATTATTGGAAA+AGG 0.341860 8.4:+66272554 MS.gene056776:CDS
ATTCAAGTGATCCTCATTCT+TGG 0.348607 8.4:+66272165 MS.gene056776:CDS
TGTTGCCATGTGCCATTTGA+TGG 0.360250 8.4:-66272341 None:intergenic
CTCTTCTTATTGGGTGGTTG+TGG 0.364026 8.4:+66270647 MS.gene056776:CDS
GCATACACATGAGGTGTTAA+AGG 0.366134 8.4:-66272305 None:intergenic
AATTGAAGATTCAATAGTTA+TGG 0.374204 8.4:+66272250 MS.gene056776:CDS
TTGTGATCAGAGACTAATTT+CGG 0.379853 8.4:-66272647 None:intergenic
CTCGAAAAGATGGAGGGACT+TGG 0.398078 8.4:+66270418 MS.gene056776:CDS
TCTTATTGGGTGGTTGTGGC+TGG 0.404375 8.4:+66270651 MS.gene056776:CDS
ACATTTGATCCTTCCACAAA+TGG 0.418127 8.4:+66272191 MS.gene056776:CDS
AACCCCATGAATGAGCTTCC+AGG 0.418653 8.4:-66270570 None:intergenic
GAACTCTGATCCAAAACAAA+AGG 0.430781 8.4:-66272422 None:intergenic
TTCAAGTGATCCTCATTCTT+GGG 0.430876 8.4:+66272166 MS.gene056776:CDS
AAATCCTGGAAGCTCATTCA+TGG 0.431377 8.4:+66270566 MS.gene056776:CDS
AATAATACTCCACTGATTTG+TGG 0.437163 8.4:+66270323 MS.gene056776:CDS
AGAGAGACGCGAGTGGATAC+TGG 0.442798 8.4:+66272472 MS.gene056776:CDS
CACAAAAGAGAAATATCATC+TGG 0.445413 8.4:-66270350 None:intergenic
AGCACTGTGGTTGTTGATGT+TGG 0.464649 8.4:+66272581 MS.gene056776:CDS
TGAAGGCTGTCTCGAAAAGA+TGG 0.470081 8.4:+66270408 MS.gene056776:CDS
TGGATCAGAGTTCGGGTACT+AGG 0.474624 8.4:+66272432 MS.gene056776:CDS
GTTGGTGATATTGGAAATAT+GGG 0.477547 8.4:+66272599 MS.gene056776:CDS
CTATATGCTATTGGTGGCAT+AGG 0.479990 8.4:+66272137 MS.gene056776:CDS
GCATTTATATTATTGGAAAA+GGG 0.482758 8.4:+66272555 MS.gene056776:CDS
GTGAGATGTCCAACCATTTG+TGG 0.487502 8.4:-66272204 None:intergenic
TTCCACCTCACGTCATGAAA+AGG 0.490506 8.4:+66270591 MS.gene056776:CDS
CATGGATCTATGCTTTGTGC+AGG 0.492337 8.4:+66270492 MS.gene056776:CDS
ACAATGCTTCTTTGAACTCG+TGG 0.495071 8.4:+66270705 MS.gene056776:CDS
CAGACACTGACATGGTTTCA+GGG 0.496188 8.4:+66272366 MS.gene056776:CDS
CCATCGTCTAAATGCTCCAT+TGG 0.502817 8.4:-66270260 None:intergenic
AGTTCCTAGAAAATATCATT+CGG 0.505984 8.4:+66270382 MS.gene056776:CDS
GTTGTATACGATCCATCAAA+TGG 0.507083 8.4:+66272329 MS.gene056776:CDS
CGTCATGAAAAGGAAAGGAA+TGG 0.514213 8.4:+66270601 MS.gene056776:CDS
TTGATCCTTCCACAAATGGT+TGG 0.514537 8.4:+66272195 MS.gene056776:CDS
CTACCTCGTCAAGAAAATCC+TGG 0.524735 8.4:+66270552 MS.gene056776:CDS
CCCTGCAAACTTGTTGCAGT+TGG 0.525074 8.4:+66272527 MS.gene056776:CDS
CAATGCTTCTTTGAACTCGT+GGG 0.529590 8.4:+66270706 MS.gene056776:CDS
AATAAGCTCTTCTTATTGGG+TGG 0.535177 8.4:+66270641 MS.gene056776:CDS
AATCCTGGAAGCTCATTCAT+GGG 0.540754 8.4:+66270567 MS.gene056776:CDS
GTCATGAAAAGGAAAGGAAT+GGG 0.545551 8.4:+66270602 MS.gene056776:CDS
CTACTTTGCTTGTGAAGCAA+TGG 0.547084 8.4:+66272106 MS.gene056776:CDS
AACTCTGATCCAAAACAAAA+GGG 0.547129 8.4:-66272421 None:intergenic
CCAACTGCAACAAGTTTGCA+GGG 0.547956 8.4:-66272527 None:intergenic
AATATGGGAAGGGCGATACT+GGG 0.556784 8.4:+66272614 MS.gene056776:CDS
CTGCTTCCTTGTCAACTGCT+AGG 0.568618 8.4:+66270735 MS.gene056776:CDS
GTGATATTGGAAATATGGGA+AGG 0.573342 8.4:+66272603 MS.gene056776:CDS
AAAGAGAAATATCATCTGGA+AGG 0.578717 8.4:-66270346 None:intergenic
ACTTGGTTTGCAGCGAAGAG+TGG 0.580873 8.4:+66270435 MS.gene056776:CDS
AGCATAAACTTGATGAGACA+TGG 0.581062 8.4:+66270474 MS.gene056776:CDS
GAAGATTCAATAGTTATGGA+CGG 0.582095 8.4:+66272254 MS.gene056776:CDS
ATTCCGTTGACAACAACTGC+AGG 0.584997 8.4:-66272398 None:intergenic
GGCTGTCTCGAAAAGATGGA+GGG 0.589666 8.4:+66270412 MS.gene056776:CDS
TCAAATGTATCCCAAGAATG+AGG 0.590287 8.4:-66272176 None:intergenic
CAGGGTGGTCTTGTAAGCAA+CGG 0.599662 8.4:-66272509 None:intergenic
GACATGGTTTCAGGGTGGAG+AGG 0.607476 8.4:+66272374 MS.gene056776:CDS
GGTCCTGCAGTTGTTGTCAA+CGG 0.619586 8.4:+66272395 MS.gene056776:CDS
TCTGGAAGGCCACAAATCAG+TGG 0.621422 8.4:-66270332 None:intergenic
CCTCACGTCATGAAAAGGAA+AGG 0.622753 8.4:+66270596 MS.gene056776:CDS
CGGGTACTAGGTTGACGATG+TGG 0.627913 8.4:+66272444 MS.gene056776:CDS
TGATATTGGAAATATGGGAA+GGG 0.630143 8.4:+66272604 MS.gene056776:CDS
GATGTCCAACCATTTGTGGA+AGG 0.636239 8.4:-66272200 None:intergenic
GCAACATGCAGACACTGACA+TGG 0.637395 8.4:+66272358 MS.gene056776:CDS
AGGCTGTCTCGAAAAGATGG+AGG 0.640959 8.4:+66270411 MS.gene056776:CDS
TATTTACCTAGCAGTTGACA+AGG 0.645117 8.4:-66270741 None:intergenic
ATGGATCTATGCTTTGTGCA+GGG 0.650304 8.4:+66270493 MS.gene056776:CDS
TGGAAAAGGGCTTAGCACTG+TGG 0.661995 8.4:+66272568 MS.gene056776:CDS
CCAATGGAGCATTTAGACGA+TGG 0.664725 8.4:+66270260 None:intergenic
TATACAACGGCATACACATG+AGG 0.672079 8.4:-66272314 None:intergenic
ATCCTGGAAGCTCATTCATG+GGG 0.677577 8.4:+66270568 MS.gene056776:CDS
GGCATAAAGAGAGACGCGAG+TGG 0.682691 8.4:+66272465 MS.gene056776:CDS
ACGATCCATCAAATGGCACA+TGG 0.684559 8.4:+66272336 MS.gene056776:CDS
AGACGCGAGTGGATACTGGT+CGG 0.708143 8.4:+66272476 MS.gene056776:CDS
GGCAAAATATACATCCGATG+TGG 0.708393 8.4:+66272275 MS.gene056776:CDS
ATTTGATGGATCGTATACAA+CGG 0.723109 8.4:-66272327 None:intergenic
TTAAAGGAGATTTACCACAT+CGG 0.724075 8.4:-66272289 None:intergenic
ACACTGACATGGTTTCAGGG+TGG 0.743053 8.4:+66272369 MS.gene056776:CDS
ACTGCAACAAGTTTGCAGGG+TGG 0.781995 8.4:-66272524 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATATTGTAAAAGAAAA+TGG - chr8.4:66270849-66270868 None:intergenic 15.0%
!! TGAATGAAAATTGAAAATAA+GGG + chr8.4:66271113-66271132 MS.gene056776:intron 15.0%
!! TTTACTTGGAAATAAATATT+TGG + chr8.4:66271073-66271092 MS.gene056776:intron 15.0%
!! AACTATTGAATCTTCAATTT+CGG - chr8.4:66272249-66272268 None:intergenic 20.0%
!! AATTGAAGATTCAATAGTTA+TGG + chr8.4:66272250-66272269 MS.gene056776:CDS 20.0%
!! AGCATTTATATTATTGGAAA+AGG + chr8.4:66272554-66272573 MS.gene056776:CDS 20.0%
!! ATAAATATGAAAGGAACAAA+TGG - chr8.4:66271226-66271245 None:intergenic 20.0%
!! ATATTTAACTAGCACAAAAA+AGG - chr8.4:66271497-66271516 None:intergenic 20.0%
!! ATGATTCTTATATTACAGTA+GGG - chr8.4:66272059-66272078 None:intergenic 20.0%
!! GCATTTATATTATTGGAAAA+GGG + chr8.4:66272555-66272574 MS.gene056776:CDS 20.0%
!! GTGAATGAAAATTGAAAATA+AGG + chr8.4:66271112-66271131 MS.gene056776:intron 20.0%
!! TAACTATTTACTATCTGTTT+GGG + chr8.4:66271769-66271788 MS.gene056776:intron 20.0%
!! TTAACTATTTACTATCTGTT+TGG + chr8.4:66271768-66271787 MS.gene056776:intron 20.0%
!!! AAAACAGATGTAACATTTTT+CGG + chr8.4:66270868-66270887 MS.gene056776:intron 20.0%
!!! AAATGTTATTTGAGTAAACA+TGG + chr8.4:66271041-66271060 MS.gene056776:intron 20.0%
!!! ATTCATTTTAAATTGCTAAC+AGG - chr8.4:66270998-66271017 None:intergenic 20.0%
!!! GATTTTCATAAACAATGTTT+TGG - chr8.4:66270908-66270927 None:intergenic 20.0%
!!! GGTAAAAGCATTTATATTAT+TGG + chr8.4:66272548-66272567 MS.gene056776:CDS 20.0%
! AAGATGAATTAGAAAAAGAC+AGG - chr8.4:66271706-66271725 None:intergenic 25.0%
! ACTATTGAATCTTCAATTTC+GGG - chr8.4:66272248-66272267 None:intergenic 25.0%
! AGTTCCTAGAAAATATCATT+CGG + chr8.4:66270382-66270401 MS.gene056776:CDS 25.0%
! CATGATTCTTATATTACAGT+AGG - chr8.4:66272060-66272079 None:intergenic 25.0%
! TATTGTAAAAGAAAATGGTG+AGG - chr8.4:66270844-66270863 None:intergenic 25.0%
! TGATTCTTATATTACAGTAG+GGG - chr8.4:66272058-66272077 None:intergenic 25.0%
! TTGGCAAAATATCATTAATG+AGG + chr8.4:66271585-66271604 MS.gene056776:intron 25.0%
!! AAAACCGAATGATATTTTCT+AGG - chr8.4:66270389-66270408 None:intergenic 25.0%
!! GATTTTCCTTCTCTTTTTTT+GGG + chr8.4:66271441-66271460 MS.gene056776:intron 25.0%
!! GTTTTATATTACTACTATCG+AGG + chr8.4:66271649-66271668 MS.gene056776:intron 25.0%
!! TGATTTTCCTTCTCTTTTTT+TGG + chr8.4:66271440-66271459 MS.gene056776:intron 25.0%
!!! AAAATATCATTCGGTTTTGA+AGG + chr8.4:66270391-66270410 MS.gene056776:CDS 25.0%
!!! ATGCAATTTTAGCTTTGAAT+AGG - chr8.4:66272014-66272033 None:intergenic 25.0%
!!! ATTTTCCTTCTCTTTTTTTG+GGG + chr8.4:66271442-66271461 MS.gene056776:intron 25.0%
!!! GTATTGATTAAGTGTGTTTT+TGG - chr8.4:66271918-66271937 None:intergenic 25.0%
AAAATAAGGGTAGTGAGAAT+AGG + chr8.4:66271126-66271145 MS.gene056776:intron 30.0%
AAAGAGAAATATCATCTGGA+AGG - chr8.4:66270349-66270368 None:intergenic 30.0%
AAATAAGGGTAGTGAGAATA+GGG + chr8.4:66271127-66271146 MS.gene056776:intron 30.0%
AACTCTGATCCAAAACAAAA+GGG - chr8.4:66272424-66272443 None:intergenic 30.0%
AATATGAAAGGAACAAATGG+AGG - chr8.4:66271223-66271242 None:intergenic 30.0%
AATTGTGATAGAGAGAACAT+GGG - chr8.4:66270950-66270969 None:intergenic 30.0%
ACATGCTTGTATATTTGACT+TGG + chr8.4:66271566-66271585 MS.gene056776:intron 30.0%
ATTACTACTATCGAGGAATA+AGG + chr8.4:66271656-66271675 MS.gene056776:intron 30.0%
ATTTGATCTTTCACATGCTT+AGG + chr8.4:66271360-66271379 MS.gene056776:intron 30.0%
CACAAAAGAGAAATATCATC+TGG - chr8.4:66270353-66270372 None:intergenic 30.0%
CACTTAATCAATACCTACTT+TGG + chr8.4:66271924-66271943 MS.gene056776:intron 30.0%
GAAAAACTATATGCTATTGG+TGG + chr8.4:66272131-66272150 MS.gene056776:CDS 30.0%
GAAAATCTATTCTTCCTAAC+TGG + chr8.4:66270921-66270940 MS.gene056776:intron 30.0%
GAAAATGGTGAGGAAAATAT+AGG - chr8.4:66270834-66270853 None:intergenic 30.0%
GAAGATTCAATAGTTATGGA+CGG + chr8.4:66272254-66272273 MS.gene056776:CDS 30.0%
GACGAAAAACTATATGCTAT+TGG + chr8.4:66272128-66272147 MS.gene056776:CDS 30.0%
GGAAATAAGCTCTTCTTATT+GGG + chr8.4:66270638-66270657 MS.gene056776:CDS 30.0%
GTTCCTTAACTTCAAAAATG+TGG + chr8.4:66271403-66271422 MS.gene056776:intron 30.0%
TAATTGTGATAGAGAGAACA+TGG - chr8.4:66270951-66270970 None:intergenic 30.0%
TATTTACTATCTGTTTGGGT+TGG + chr8.4:66271773-66271792 MS.gene056776:intron 30.0%
TCAATTTCGGGAACTATATT+AGG - chr8.4:66272236-66272255 None:intergenic 30.0%
TGATATTGGAAATATGGGAA+GGG + chr8.4:66272604-66272623 MS.gene056776:CDS 30.0%
TGATTAACTTAGCTTCTGAA+GGG - chr8.4:66270780-66270799 None:intergenic 30.0%
TTAAAGGAGATTTACCACAT+CGG - chr8.4:66272292-66272311 None:intergenic 30.0%
TTCATTCACAGTAAAACTTG+TGG - chr8.4:66271101-66271120 None:intergenic 30.0%
TTGTGATCAGAGACTAATTT+CGG - chr8.4:66272650-66272669 None:intergenic 30.0%
! ATTTGATGGATCGTATACAA+CGG - chr8.4:66272330-66272349 None:intergenic 30.0%
! TCATGTTTACTGTTACGTTT+TGG + chr8.4:66270526-66270545 MS.gene056776:CDS 30.0%
! TGATATTTCTCTTTTGTGTC+TGG + chr8.4:66270355-66270374 MS.gene056776:CDS 30.0%
!! AATAATACTCCACTGATTTG+TGG + chr8.4:66270323-66270342 MS.gene056776:CDS 30.0%
!! CATGGTCTTAGTATTTTACT+TGG + chr8.4:66271059-66271078 MS.gene056776:intron 30.0%
!! GTTGGTGATATTGGAAATAT+GGG + chr8.4:66272599-66272618 MS.gene056776:CDS 30.0%
!! TGTTGGTGATATTGGAAATA+TGG + chr8.4:66272598-66272617 MS.gene056776:CDS 30.0%
!!! GATTAAGTGTGTTTTTGGAA+TGG - chr8.4:66271913-66271932 None:intergenic 30.0%
!!! GTACCACATTTTTGAAGTTA+AGG - chr8.4:66271409-66271428 None:intergenic 30.0%
!!! TTCCTTCACATTTTTTTTCC+AGG + chr8.4:66272081-66272100 MS.gene056776:intron 30.0%
!!! TTTTCCTTCTCTTTTTTTGG+GGG + chr8.4:66271443-66271462 MS.gene056776:intron 30.0%
!!! TTTTGTTTTGGATCAGAGTT+CGG + chr8.4:66272424-66272443 MS.gene056776:CDS 30.0%
AATAAGCTCTTCTTATTGGG+TGG + chr8.4:66270641-66270660 MS.gene056776:CDS 35.0%
ACATTTGATCCTTCCACAAA+TGG + chr8.4:66272191-66272210 MS.gene056776:CDS 35.0%
AGCATAAACTTGATGAGACA+TGG + chr8.4:66270474-66270493 MS.gene056776:CDS 35.0%
ATTCAAGTGATCCTCATTCT+TGG + chr8.4:66272165-66272184 MS.gene056776:CDS 35.0%
CACCTGGAAAAAAAATGTGA+AGG - chr8.4:66272086-66272105 None:intergenic 35.0%
GAACTCTGATCCAAAACAAA+AGG - chr8.4:66272425-66272444 None:intergenic 35.0%
GCTTAATTCTTTCAAAACGC+CGG - chr8.4:66271891-66271910 None:intergenic 35.0%
GGGAAATAAGCTCTTCTTAT+TGG + chr8.4:66270637-66270656 MS.gene056776:CDS 35.0%
GTCATGAAAAGGAAAGGAAT+GGG + chr8.4:66270602-66270621 MS.gene056776:CDS 35.0%
GTGATATTGGAAATATGGGA+AGG + chr8.4:66272603-66272622 MS.gene056776:CDS 35.0%
GTGATTAACTTAGCTTCTGA+AGG - chr8.4:66270781-66270800 None:intergenic 35.0%
GTTGTATACGATCCATCAAA+TGG + chr8.4:66272329-66272348 MS.gene056776:CDS 35.0%
TATTTACCTAGCAGTTGACA+AGG - chr8.4:66270744-66270763 None:intergenic 35.0%
TCAAATGTATCCCAAGAATG+AGG - chr8.4:66272179-66272198 None:intergenic 35.0%
TTCAAGTGATCCTCATTCTT+GGG + chr8.4:66272166-66272185 MS.gene056776:CDS 35.0%
! AGAAAAAGACAGGTGTGTTT+TGG - chr8.4:66271696-66271715 None:intergenic 35.0%
! GAAAAAGACAGGTGTGTTTT+GGG - chr8.4:66271695-66271714 None:intergenic 35.0%
!! GTTGTTGATGTTGGTGATAT+TGG + chr8.4:66272590-66272609 MS.gene056776:CDS 35.0%
!!! TTTGTTTTGGATCAGAGTTC+GGG + chr8.4:66272425-66272444 MS.gene056776:CDS 35.0%
AAAACTTCCACTTTCCTAGC+AGG - chr8.4:66271737-66271756 None:intergenic 40.0%
AAAGTAGCTCCTTGAAACGT+GGG - chr8.4:66271815-66271834 None:intergenic 40.0%
AAATCCTGGAAGCTCATTCA+TGG + chr8.4:66270566-66270585 MS.gene056776:CDS 40.0%
AACTCCCCCAAAAAAAGAGA+AGG - chr8.4:66271450-66271469 None:intergenic 40.0%
AATCCTGGAAGCTCATTCAT+GGG + chr8.4:66270567-66270586 MS.gene056776:CDS 40.0%
AATTCTTTCAAAACGCCGGT+AGG - chr8.4:66271887-66271906 None:intergenic 40.0%
ACAATGCTTCTTTGAACTCG+TGG + chr8.4:66270705-66270724 MS.gene056776:CDS 40.0%
ACAGTTGCATTCTACATAGG+CGG + chr8.4:66271311-66271330 MS.gene056776:intron 40.0%
ACCATGATAACAAGAGAGCA+TGG - chr8.4:66271952-66271971 None:intergenic 40.0%
ATGGATCTATGCTTTGTGCA+GGG + chr8.4:66270493-66270512 MS.gene056776:CDS 40.0%
CAATGCTTCTTTGAACTCGT+GGG + chr8.4:66270706-66270725 MS.gene056776:CDS 40.0%
CCTACAGTTGCATTCTACAT+AGG + chr8.4:66271308-66271327 MS.gene056776:intron 40.0%
CCTATGTAGAATGCAACTGT+AGG - chr8.4:66271311-66271330 None:intergenic 40.0%
CGTCATGAAAAGGAAAGGAA+TGG + chr8.4:66270601-66270620 MS.gene056776:CDS 40.0%
CTACTTTGCTTGTGAAGCAA+TGG + chr8.4:66272106-66272125 MS.gene056776:CDS 40.0%
GGCAAAATATACATCCGATG+TGG + chr8.4:66272275-66272294 MS.gene056776:CDS 40.0%
TATACAACGGCATACACATG+AGG - chr8.4:66272317-66272336 None:intergenic 40.0%
TGCTTTGTGCAGGGATAAAT+TGG + chr8.4:66270502-66270521 MS.gene056776:CDS 40.0%
TTGATCCTTCCACAAATGGT+TGG + chr8.4:66272195-66272214 MS.gene056776:CDS 40.0%
! CCATGATAACAAGAGAGCAT+GGG - chr8.4:66271951-66271970 None:intergenic 40.0%
! CTATATGCTATTGGTGGCAT+AGG + chr8.4:66272137-66272156 MS.gene056776:CDS 40.0%
! GCATACACATGAGGTGTTAA+AGG - chr8.4:66272308-66272327 None:intergenic 40.0%
!! CAACGGAATCCCTTTTGTTT+TGG + chr8.4:66272412-66272431 MS.gene056776:CDS 40.0%
!! TTACTATCTGTTTGGGTTGG+CGG + chr8.4:66271776-66271795 MS.gene056776:intron 40.0%
!!! AGGAATGGGTTTTGAAGCTT+TGG + chr8.4:66270616-66270635 MS.gene056776:CDS 40.0%
!!! CATCTTTTTTGAAGCCTGCT+AGG + chr8.4:66271720-66271739 MS.gene056776:intron 40.0%
!!! GGAATGGGTTTTGAAGCTTT+GGG + chr8.4:66270617-66270636 MS.gene056776:CDS 40.0%
!!! TTCTCTTTTTTTGGGGGAGT+TGG + chr8.4:66271449-66271468 MS.gene056776:intron 40.0%
AAAGCCAAACCCACGTTTCA+AGG + chr8.4:66271803-66271822 MS.gene056776:intron 45.0%
AAATATGGGAAGGGCGATAC+TGG + chr8.4:66272613-66272632 MS.gene056776:CDS 45.0%
AATATGGGAAGGGCGATACT+GGG + chr8.4:66272614-66272633 MS.gene056776:CDS 45.0%
ACCAACTGCAACAAGTTTGC+AGG - chr8.4:66272531-66272550 None:intergenic 45.0%
ACGATCCATCAAATGGCACA+TGG + chr8.4:66272336-66272355 MS.gene056776:CDS 45.0%
AGCACTGTGGTTGTTGATGT+TGG + chr8.4:66272581-66272600 MS.gene056776:CDS 45.0%
ATCCTGGAAGCTCATTCATG+GGG + chr8.4:66270568-66270587 MS.gene056776:CDS 45.0%
ATTCCGTTGACAACAACTGC+AGG - chr8.4:66272401-66272420 None:intergenic 45.0%
CAGACACTGACATGGTTTCA+GGG + chr8.4:66272366-66272385 MS.gene056776:CDS 45.0%
CATGGATCTATGCTTTGTGC+AGG + chr8.4:66270492-66270511 MS.gene056776:CDS 45.0%
CCAACTGCAACAAGTTTGCA+GGG - chr8.4:66272530-66272549 None:intergenic 45.0%
CCTCACGTCATGAAAAGGAA+AGG + chr8.4:66270596-66270615 MS.gene056776:CDS 45.0%
CTACCTCGTCAAGAAAATCC+TGG + chr8.4:66270552-66270571 MS.gene056776:CDS 45.0%
CTCTTCTTATTGGGTGGTTG+TGG + chr8.4:66270647-66270666 MS.gene056776:CDS 45.0%
GAAAGGAACAAATGGAGGAG+TGG - chr8.4:66271218-66271237 None:intergenic 45.0%
GAAAGTAGCTCCTTGAAACG+TGG - chr8.4:66271816-66271835 None:intergenic 45.0%
GATGTCCAACCATTTGTGGA+AGG - chr8.4:66272203-66272222 None:intergenic 45.0%
GGTAGTGAGAATAGGGAAGA+AGG + chr8.4:66271134-66271153 MS.gene056776:intron 45.0%
GTGAGATGTCCAACCATTTG+TGG - chr8.4:66272207-66272226 None:intergenic 45.0%
TGAAGGCTGTCTCGAAAAGA+TGG + chr8.4:66270408-66270427 MS.gene056776:CDS 45.0%
TTCACAAGCAAAGTAGCACC+TGG - chr8.4:66272102-66272121 None:intergenic 45.0%
TTCCACCTCACGTCATGAAA+AGG + chr8.4:66270591-66270610 MS.gene056776:CDS 45.0%
! CAGGATTTTCTTGACGAGGT+AGG - chr8.4:66270554-66270573 None:intergenic 45.0%
! CCCATGCTCTCTTGTTATCA+TGG + chr8.4:66271948-66271967 MS.gene056776:intron 45.0%
! CCTTTCCTTTTCATGACGTG+AGG - chr8.4:66270599-66270618 None:intergenic 45.0%
! CTTCCAGGATTTTCTTGACG+AGG - chr8.4:66270558-66270577 None:intergenic 45.0%
! GTTTCAAGGAGCTACTTTCG+TGG + chr8.4:66271817-66271836 MS.gene056776:intron 45.0%
! TTCCTTTTCATGACGTGAGG+TGG - chr8.4:66270596-66270615 None:intergenic 45.0%
! TTTGAAGCCTGCTAGGAAAG+TGG + chr8.4:66271727-66271746 MS.gene056776:intron 45.0%
!! TGTTGCCATGTGCCATTTGA+TGG - chr8.4:66272344-66272363 None:intergenic 45.0%
!!! TTCTAGCTTTTGCTGCAACG+TGG + chr8.4:66271858-66271877 MS.gene056776:intron 45.0%
!! TAAAAAAATATAAATATGAA+AGG - chr8.4:66271235-66271254 None:intergenic 5.0%
AACCCCATGAATGAGCTTCC+AGG - chr8.4:66270573-66270592 None:intergenic 50.0%
ACACTGACATGGTTTCAGGG+TGG + chr8.4:66272369-66272388 MS.gene056776:CDS 50.0%
ACTGCAACAAGTTTGCAGGG+TGG - chr8.4:66272527-66272546 None:intergenic 50.0%
AGCTCCTTGAAACGTGGGTT+TGG - chr8.4:66271810-66271829 None:intergenic 50.0%
AGGCTGTCTCGAAAAGATGG+AGG + chr8.4:66270411-66270430 MS.gene056776:CDS 50.0%
CTCGAAAAGATGGAGGGACT+TGG + chr8.4:66270418-66270437 MS.gene056776:CDS 50.0%
CTGCTTCCTTGTCAACTGCT+AGG + chr8.4:66270735-66270754 MS.gene056776:CDS 50.0%
GAGAACATGGGAAGCCAGTT+AGG - chr8.4:66270938-66270957 None:intergenic 50.0%
GCAACATGCAGACACTGACA+TGG + chr8.4:66272358-66272377 MS.gene056776:CDS 50.0%
GCAGACACTGACATGGTTTC+AGG + chr8.4:66272365-66272384 MS.gene056776:CDS 50.0%
GGCTGTCTCGAAAAGATGGA+GGG + chr8.4:66270412-66270431 MS.gene056776:CDS 50.0%
GGTCCTGCAGTTGTTGTCAA+CGG + chr8.4:66272395-66272414 MS.gene056776:CDS 50.0%
TCTGGAAGGCCACAAATCAG+TGG - chr8.4:66270335-66270354 None:intergenic 50.0%
TCTTATTGGGTGGTTGTGGC+TGG + chr8.4:66270651-66270670 MS.gene056776:CDS 50.0%
TGGAAAAGGGCTTAGCACTG+TGG + chr8.4:66272568-66272587 MS.gene056776:CDS 50.0%
TGGAGGAGTGGAAGTTGACA+AGG - chr8.4:66271206-66271225 None:intergenic 50.0%
TGGATCAGAGTTCGGGTACT+AGG + chr8.4:66272432-66272451 MS.gene056776:CDS 50.0%
! AGAGAGCATGGGACCAAAGT+AGG - chr8.4:66271940-66271959 None:intergenic 50.0%
! CTTCTGAAGGGAAAGTCGTG+AGG - chr8.4:66270768-66270787 None:intergenic 50.0%
!! ACTTGGTTTGCAGCGAAGAG+TGG + chr8.4:66270435-66270454 MS.gene056776:CDS 50.0%
!! AGGTGTGTTTTGGGCGTGAA+GGG - chr8.4:66271686-66271705 None:intergenic 50.0%
!! CAGGGTGGTCTTGTAAGCAA+CGG - chr8.4:66272512-66272531 None:intergenic 50.0%
!! CCCTGCAAACTTGTTGCAGT+TGG + chr8.4:66272527-66272546 MS.gene056776:CDS 50.0%
!! TATCTGTTTGGGTTGGCGGT+GGG + chr8.4:66271780-66271799 MS.gene056776:intron 50.0%
AGACGCGAGTGGATACTGGT+CGG + chr8.4:66272476-66272495 MS.gene056776:CDS 55.0%
AGAGAGACGCGAGTGGATAC+TGG + chr8.4:66272472-66272491 MS.gene056776:CDS 55.0%
GACATGGTTTCAGGGTGGAG+AGG + chr8.4:66272374-66272393 MS.gene056776:CDS 55.0%
GCTGCAACGTGGTTTCCTAC+CGG + chr8.4:66271869-66271888 MS.gene056776:intron 55.0%
GGCATAAAGAGAGACGCGAG+TGG + chr8.4:66272465-66272484 MS.gene056776:CDS 55.0%
! CGGGTACTAGGTTGACGATG+TGG + chr8.4:66272444-66272463 MS.gene056776:CDS 55.0%
!! CAGGTGTGTTTTGGGCGTGA+AGG - chr8.4:66271687-66271706 None:intergenic 55.0%
!! CTATCTGTTTGGGTTGGCGG+TGG + chr8.4:66271779-66271798 MS.gene056776:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 66270263 66272700 66270263 ID=MS.gene056776
chr8.4 mRNA 66270263 66272700 66270263 ID=MS.gene056776.t1;Parent=MS.gene056776
chr8.4 exon 66270263 66270756 66270263 ID=MS.gene056776.t1.exon1;Parent=MS.gene056776.t1
chr8.4 CDS 66270263 66270756 66270263 ID=cds.MS.gene056776.t1;Parent=MS.gene056776.t1
chr8.4 exon 66272103 66272700 66272103 ID=MS.gene056776.t1.exon2;Parent=MS.gene056776.t1
chr8.4 CDS 66272103 66272700 66272103 ID=cds.MS.gene056776.t1;Parent=MS.gene056776.t1
Gene Sequence

>MS.gene056776

ATGGAGCATTTAGACGATGGCGAAGCATCAGAAAATAATGTTGATGAAGTAGAAGTCACTAATAATACTCCACTGATTTGTGGCCTTCCAGATGATATTTCTCTTTTGTGTCTGGCAAGAGTTCCTAGAAAATATCATTCGGTTTTGAAGGCTGTCTCGAAAAGATGGAGGGACTTGGTTTGCAGCGAAGAGTGGCTTTATTATCGTAGAAAGCATAAACTTGATGAGACATGGATCTATGCTTTGTGCAGGGATAAATTGGATCATGTTTACTGTTACGTTTTGGATCCTACCTCGTCAAGAAAATCCTGGAAGCTCATTCATGGGGTTCCACCTCACGTCATGAAAAGGAAAGGAATGGGTTTTGAAGCTTTGGGAAATAAGCTCTTCTTATTGGGTGGTTGTGGCTGGTCTGAAGATGCTACTGAAGAAGTTTATTCATACAATGCTTCTTTGAACTCGTGGGTTGAAGCTGCTTCCTTGTCAACTGCTAGGTAAATATCCTCACGACTTTCCCTTCAGAAGCTAAGTTAATCACTTGAACTAATAAATATAAGAAAATATATATCCTATATTTTCCTCACCATTTTCTTTTACAATATTTCAAAACAGATGTAACATTTTTCGGAAATTTTGAAAATGCCAAAACATTGTTTATGAAAATCTATTCTTCCTAACTGGCTTCCCATGTTCTCTCTATCACAATTATTCACTGCGCGAGTATTTCATTTTCCTGTTAGCAATTTAAAATGAATACATTTTAGAAAACGAAAACTGAAAATGTTATTTGAGTAAACATGGTCTTAGTATTTTACTTGGAAATAAATATTTGGATCCACAAGTTTTACTGTGAATGAAAATTGAAAATAAGGGTAGTGAGAATAGGGAAGAAGGAAAATTATGAGTTATGACTGTATCTTAAATCATATTTTGTCAAGTACCTTGTCAACTTCCACTCCTCCATTTGTTCCTTTCATATTTATATTTTTTTACGAAGAACAATCGTGAAGCTTGTAAATTAATGCTTCTAATAGTAATAGAATCTCCTACAGTTGCATTCTACATAGGCGGCATTATATATAATCTAGTATCTTAGTATTTGATCTTTCACATGCTTAGGCAGTCTTGAAGAATTATGTTGTTCCTTAACTTCAAAAATGTGGTACGAATCTTAATTTGATTTTCCTTCTCTTTTTTTGGGGGAGTTGGTGTTTTGACTATGAAATGTGAACCTTTTTTGTGCTAGTTAAATATCAAACTATATTATTTTGCACACAGTTCTGATTTACTTGAAAAATCTTTCACATGCTTGTATATTTGACTTGGCAAAATATCATTAATGAGGAACTATTAGTTCACAAATTCTTATTGATTTATGCTTGACTTGTTTTATATTACTACTATCGAGGAATAAGGTTATCCCTTCACGCCCAAAACACACCTGTCTTTTTCTAATTCATCTTTTTTGAAGCCTGCTAGGAAAGTGGAAGTTTTGTATTTTATGTTTAACTATTTACTATCTGTTTGGGTTGGCGGTGGGAAAGCCAAACCCACGTTTCAAGGAGCTACTTTCGTGGAAATCTAGAAGCTTGCTTTTCTAGCTTTTGCTGCAACGTGGTTTCCTACCGGCGTTTTGAAAGAATTAAGCCATTCCAAAAACACACTTAATCAATACCTACTTTGGTCCCATGCTCTCTTGTTATCATGGTCAAAAAATTATCTCTACGTATTTTGTTTGTCAATTTTTACCTATTCAAAGCTAAAATTGCATGATATCATCATCTGTCATTAGCCCCTACTGTAATATAAGAATCATGATTCCTTCACATTTTTTTTCCAGGTGCTACTTTGCTTGTGAAGCAATGGACGAAAAACTATATGCTATTGGTGGCATAGGTTCAAATTCAAGTGATCCTCATTCTTGGGATACATTTGATCCTTCCACAAATGGTTGGACATCTCACAGAGATCCTAATATAGTTCCCGAAATTGAAGATTCAATAGTTATGGACGGCAAAATATACATCCGATGTGGTAAATCTCCTTTAACACCTCATGTGTATGCCGTTGTATACGATCCATCAAATGGCACATGGCAACATGCAGACACTGACATGGTTTCAGGGTGGAGAGGTCCTGCAGTTGTTGTCAACGGAATCCCTTTTGTTTTGGATCAGAGTTCGGGTACTAGGTTGACGATGTGGCATAAAGAGAGACGCGAGTGGATACTGGTCGGTAAGTTGTCACCGTTGCTTACAAGACCACCCTGCAAACTTGTTGCAGTTGGTAAAAGCATTTATATTATTGGAAAAGGGCTTAGCACTGTGGTTGTTGATGTTGGTGATATTGGAAATATGGGAAGGGCGATACTGGGTTCTTCTATACCGAAATTAGTCTCTGATCACAATGTAATTAGTTGTAAATGCTTGTCAATCTGA

Protein sequence

>MS.gene056776.t1

MEHLDDGEASENNVDEVEVTNNTPLICGLPDDISLLCLARVPRKYHSVLKAVSKRWRDLVCSEEWLYYRRKHKLDETWIYALCRDKLDHVYCYVLDPTSSRKSWKLIHGVPPHVMKRKGMGFEALGNKLFLLGGCGWSEDATEEVYSYNASLNSWVEAASLSTARCYFACEAMDEKLYAIGGIGSNSSDPHSWDTFDPSTNGWTSHRDPNIVPEIEDSIVMDGKIYIRCGKSPLTPHVYAVVYDPSNGTWQHADTDMVSGWRGPAVVVNGIPFVLDQSSGTRLTMWHKERREWILVGKLSPLLTRPPCKLVAVGKSIYIIGKGLSTVVVDVGDIGNMGRAILGSSIPKLVSDHNVISCKCLSI