AlfalfaGEDB | MS.gene056776

M. sativa cultivar XinJiangDaYe / MS.gene056776

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01344.28 PF13964.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056776.t1	XP_013444839.1	86.5	363	49	0	1	363	1	363	1.40E-165	592.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056776.t1	Q9M2C9	46.4	343	175	5	25	363	21	358	7.7e-80	298.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056776.t1	A0A072TN21	86.5	363	49	0	1	363	1	363	1.0e-165	592.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene056776	0.857506	1.56E-62	-1.69E-46
MS.gene049283	MS.gene056776	0.824265	8.86E-54	-1.69E-46
MS.gene049452	MS.gene056776	0.821	5.09E-53	-1.69E-46
MS.gene049499	MS.gene056776	0.806232	9.09E-50	-1.69E-46
MS.gene049821	MS.gene056776	0.802468	5.53E-49	-1.69E-46
MS.gene049983	MS.gene056776	0.843436	1.40E-58	-1.69E-46
MS.gene050654	MS.gene056776	0.810723	1.00E-50	-1.69E-46
MS.gene050759	MS.gene056776	0.815056	1.12E-51	-1.69E-46
MS.gene050962	MS.gene056776	0.801356	9.36E-49	-1.69E-46
MS.gene051198	MS.gene056776	0.807297	5.41E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056776.t1	MTR_8g030940	95.317	363	17	0	1	363	1	363	0.0	712
MS.gene056776.t1	MTR_4g114110	29.080	337	221	9	21	349	77	403	1.29e-33	129
MS.gene056776.t1	MTR_8g085600	28.797	316	211	8	24	331	76	385	1.44e-31	124
MS.gene056776.t1	MTR_2g019230	28.395	324	213	9	25	337	52	367	4.72e-29	116
MS.gene056776.t1	MTR_3g085570	28.283	297	171	10	21	296	31	306	8.71e-29	115
MS.gene056776.t1	MTR_8g080370	32.922	243	143	8	19	250	45	278	9.96e-29	115
MS.gene056776.t1	MTR_3g094850	29.924	264	161	8	20	276	4	250	7.89e-27	109
MS.gene056776.t1	MTR_7g095220	26.603	312	193	11	25	321	4	294	7.25e-19	87.0
MS.gene056776.t1	MTR_2g008440	28.571	238	153	6	21	252	39	265	2.73e-18	86.3
MS.gene056776.t1	MTR_3g073640	23.276	348	195	13	21	299	39	383	5.45e-18	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056776.t1	AT3G61350	53.644	343	150	5	25	363	21	358	1.68e-124	362
MS.gene056776.t1	AT3G61350	53.644	343	150	5	25	363	21	358	1.68e-124	362
MS.gene056776.t1	AT1G55270	29.781	319	208	8	24	333	77	388	7.23e-33	127
MS.gene056776.t1	AT2G24540	24.796	367	252	9	12	363	15	372	3.27e-29	116
MS.gene056776.t1	AT1G67480	29.739	306	185	11	3	296	23	310	1.27e-25	106
MS.gene056776.t1	AT1G67480	29.739	306	185	11	3	296	23	310	1.27e-25	106
MS.gene056776.t1	AT1G67480	29.739	306	185	11	3	296	23	310	1.27e-25	106
MS.gene056776.t1	AT1G30090	26.205	332	220	12	16	331	43	365	1.36e-24	103
MS.gene056776.t1	AT1G27420	24.739	287	191	8	20	293	5	279	1.18e-20	92.0
MS.gene056776.t1	AT4G39590	25.000	340	219	7	6	320	18	346	3.24e-20	91.7

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Find 89 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAAATATCATCTGGA+AGG	0.578717	8.4:-66270346	None:intergenic
AAATATGGGAAGGGCGATAC+TGG	0.279707	8.4:+66272613	MS.gene056776:CDS
AAATCCTGGAAGCTCATTCA+TGG	0.431377	8.4:+66270566	MS.gene056776:CDS
AACCCCATGAATGAGCTTCC+AGG	0.418653	8.4:-66270570	None:intergenic
AACTATTGAATCTTCAATTT+CGG	0.215275	8.4:-66272246	None:intergenic
AACTCTGATCCAAAACAAAA+GGG	0.547129	8.4:-66272421	None:intergenic
AATAAGCTCTTCTTATTGGG+TGG	0.535177	8.4:+66270641	MS.gene056776:CDS
AATAATACTCCACTGATTTG+TGG	0.437163	8.4:+66270323	MS.gene056776:CDS
AATATGGGAAGGGCGATACT+GGG	0.556784	8.4:+66272614	MS.gene056776:CDS
AATCCTGGAAGCTCATTCAT+GGG	0.540754	8.4:+66270567	MS.gene056776:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGGGTAGTGAGAAT+AGG	+	chr8.4:66271126-66271145	MS.gene056776:intron	30.0%
AAAGAGAAATATCATCTGGA+AGG	-	chr8.4:66270349-66270368	None:intergenic	30.0%
AAATAAGGGTAGTGAGAATA+GGG	+	chr8.4:66271127-66271146	MS.gene056776:intron	30.0%
AACTCTGATCCAAAACAAAA+GGG	-	chr8.4:66272424-66272443	None:intergenic	30.0%
AATATGAAAGGAACAAATGG+AGG	-	chr8.4:66271223-66271242	None:intergenic	30.0%
AATTGTGATAGAGAGAACAT+GGG	-	chr8.4:66270950-66270969	None:intergenic	30.0%
ACATGCTTGTATATTTGACT+TGG	+	chr8.4:66271566-66271585	MS.gene056776:intron	30.0%
ATTACTACTATCGAGGAATA+AGG	+	chr8.4:66271656-66271675	MS.gene056776:intron	30.0%
ATTTGATCTTTCACATGCTT+AGG	+	chr8.4:66271360-66271379	MS.gene056776:intron	30.0%
CACAAAAGAGAAATATCATC+TGG	-	chr8.4:66270353-66270372	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	66270263	66272700	66270263	ID=MS.gene056776
chr8.4	mRNA	66270263	66272700	66270263	ID=MS.gene056776.t1;Parent=MS.gene056776
chr8.4	exon	66270263	66270756	66270263	ID=MS.gene056776.t1.exon1;Parent=MS.gene056776.t1
chr8.4	CDS	66270263	66270756	66270263	ID=cds.MS.gene056776.t1;Parent=MS.gene056776.t1
chr8.4	exon	66272103	66272700	66272103	ID=MS.gene056776.t1.exon2;Parent=MS.gene056776.t1
chr8.4	CDS	66272103	66272700	66272103	ID=cds.MS.gene056776.t1;Parent=MS.gene056776.t1

Gene Sequence

>MS.gene056776

ATGGAGCATTTAGACGATGGCGAAGCATCAGAAAATAATGTTGATGAAGTAGAAGTCACTAATAATACTCCACTGATTTGTGGCCTTCCAGATGATATTTCTCTTTTGTGTCTGGCAAGAGTTCCTAGAAAATATCATTCGGTTTTGAAGGCTGTCTCGAAAAGATGGAGGGACTTGGTTTGCAGCGAAGAGTGGCTTTATTATCGTAGAAAGCATAAACTTGATGAGACATGGATCTATGCTTTGTGCAGGGATAAATTGGATCATGTTTACTGTTACGTTTTGGATCCTACCTCGTCAAGAAAATCCTGGAAGCTCATTCATGGGGTTCCACCTCACGTCATGAAAAGGAAAGGAATGGGTTTTGAAGCTTTGGGAAATAAGCTCTTCTTATTGGGTGGTTGTGGCTGGTCTGAAGATGCTACTGAAGAAGTTTATTCATACAATGCTTCTTTGAACTCGTGGGTTGAAGCTGCTTCCTTGTCAACTGCTAGGTAAATATCCTCACGACTTTCCCTTCAGAAGCTAAGTTAATCACTTGAACTAATAAATATAAGAAAATATATATCCTATATTTTCCTCACCATTTTCTTTTACAATATTTCAAAACAGATGTAACATTTTTCGGAAATTTTGAAAATGCCAAAACATTGTTTATGAAAATCTATTCTTCCTAACTGGCTTCCCATGTTCTCTCTATCACAATTATTCACTGCGCGAGTATTTCATTTTCCTGTTAGCAATTTAAAATGAATACATTTTAGAAAACGAAAACTGAAAATGTTATTTGAGTAAACATGGTCTTAGTATTTTACTTGGAAATAAATATTTGGATCCACAAGTTTTACTGTGAATGAAAATTGAAAATAAGGGTAGTGAGAATAGGGAAGAAGGAAAATTATGAGTTATGACTGTATCTTAAATCATATTTTGTCAAGTACCTTGTCAACTTCCACTCCTCCATTTGTTCCTTTCATATTTATATTTTTTTACGAAGAACAATCGTGAAGCTTGTAAATTAATGCTTCTAATAGTAATAGAATCTCCTACAGTTGCATTCTACATAGGCGGCATTATATATAATCTAGTATCTTAGTATTTGATCTTTCACATGCTTAGGCAGTCTTGAAGAATTATGTTGTTCCTTAACTTCAAAAATGTGGTACGAATCTTAATTTGATTTTCCTTCTCTTTTTTTGGGGGAGTTGGTGTTTTGACTATGAAATGTGAACCTTTTTTGTGCTAGTTAAATATCAAACTATATTATTTTGCACACAGTTCTGATTTACTTGAAAAATCTTTCACATGCTTGTATATTTGACTTGGCAAAATATCATTAATGAGGAACTATTAGTTCACAAATTCTTATTGATTTATGCTTGACTTGTTTTATATTACTACTATCGAGGAATAAGGTTATCCCTTCACGCCCAAAACACACCTGTCTTTTTCTAATTCATCTTTTTTGAAGCCTGCTAGGAAAGTGGAAGTTTTGTATTTTATGTTTAACTATTTACTATCTGTTTGGGTTGGCGGTGGGAAAGCCAAACCCACGTTTCAAGGAGCTACTTTCGTGGAAATCTAGAAGCTTGCTTTTCTAGCTTTTGCTGCAACGTGGTTTCCTACCGGCGTTTTGAAAGAATTAAGCCATTCCAAAAACACACTTAATCAATACCTACTTTGGTCCCATGCTCTCTTGTTATCATGGTCAAAAAATTATCTCTACGTATTTTGTTTGTCAATTTTTACCTATTCAAAGCTAAAATTGCATGATATCATCATCTGTCATTAGCCCCTACTGTAATATAAGAATCATGATTCCTTCACATTTTTTTTCCAGGTGCTACTTTGCTTGTGAAGCAATGGACGAAAAACTATATGCTATTGGTGGCATAGGTTCAAATTCAAGTGATCCTCATTCTTGGGATACATTTGATCCTTCCACAAATGGTTGGACATCTCACAGAGATCCTAATATAGTTCCCGAAATTGAAGATTCAATAGTTATGGACGGCAAAATATACATCCGATGTGGTAAATCTCCTTTAACACCTCATGTGTATGCCGTTGTATACGATCCATCAAATGGCACATGGCAACATGCAGACACTGACATGGTTTCAGGGTGGAGAGGTCCTGCAGTTGTTGTCAACGGAATCCCTTTTGTTTTGGATCAGAGTTCGGGTACTAGGTTGACGATGTGGCATAAAGAGAGACGCGAGTGGATACTGGTCGGTAAGTTGTCACCGTTGCTTACAAGACCACCCTGCAAACTTGTTGCAGTTGGTAAAAGCATTTATATTATTGGAAAAGGGCTTAGCACTGTGGTTGTTGATGTTGGTGATATTGGAAATATGGGAAGGGCGATACTGGGTTCTTCTATACCGAAATTAGTCTCTGATCACAATGTAATTAGTTGTAAATGCTTGTCAATCTGA

Protein sequence

>MS.gene056776.t1

MEHLDDGEASENNVDEVEVTNNTPLICGLPDDISLLCLARVPRKYHSVLKAVSKRWRDLVCSEEWLYYRRKHKLDETWIYALCRDKLDHVYCYVLDPTSSRKSWKLIHGVPPHVMKRKGMGFEALGNKLFLLGGCGWSEDATEEVYSYNASLNSWVEAASLSTARCYFACEAMDEKLYAIGGIGSNSSDPHSWDTFDPSTNGWTSHRDPNIVPEIEDSIVMDGKIYIRCGKSPLTPHVYAVVYDPSNGTWQHADTDMVSGWRGPAVVVNGIPFVLDQSSGTRLTMWHKERREWILVGKLSPLLTRPPCKLVAVGKSIYIIGKGLSTVVVDVGDIGNMGRAILGSSIPKLVSDHNVISCKCLSI