Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60329.t1 | AES91128.2 | 98.6 | 358 | 4 | 1 | 1 | 357 | 1 | 358 | 1.60E-166 | 595.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60329.t1 | Q8LSZ4 | 55.2 | 364 | 135 | 9 | 5 | 355 | 22 | 370 | 4.4e-80 | 299.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60329.t1 | G7JNS6 | 98.6 | 358 | 4 | 1 | 1 | 357 | 1 | 358 | 1.2e-166 | 595.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene60329.t1 | TF | E2F-DP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene60329 | 0.810653 | 1.04E-50 | -1.69E-46 |
| MS.gene053173 | MS.gene60329 | 0.8073 | 5.41E-50 | -1.69E-46 |
| MS.gene053348 | MS.gene60329 | 0.822057 | 2.90E-53 | -1.69E-46 |
| MS.gene054593 | MS.gene60329 | 0.813015 | 3.17E-51 | -1.69E-46 |
| MS.gene054633 | MS.gene60329 | 0.802571 | 5.27E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60329.t1 | MTR_4g106540 | 98.603 | 358 | 4 | 1 | 1 | 357 | 1 | 358 | 0.0 | 729 |
| MS.gene60329.t1 | MTR_4g106540 | 98.319 | 357 | 5 | 1 | 1 | 356 | 1 | 357 | 0.0 | 726 |
| MS.gene60329.t1 | MTR_4g106540 | 96.703 | 364 | 5 | 2 | 1 | 357 | 1 | 364 | 0.0 | 720 |
| MS.gene60329.t1 | MTR_4g106540 | 98.230 | 339 | 5 | 1 | 1 | 338 | 1 | 339 | 0.0 | 682 |
| MS.gene60329.t1 | MTR_4g106540 | 96.232 | 345 | 6 | 2 | 1 | 338 | 1 | 345 | 0.0 | 674 |
| MS.gene60329.t1 | MTR_3g113800 | 46.377 | 69 | 37 | 0 | 14 | 82 | 99 | 167 | 9.77e-12 | 65.5 |
| MS.gene60329.t1 | MTR_3g113800 | 46.377 | 69 | 37 | 0 | 14 | 82 | 99 | 167 | 1.35e-11 | 65.5 |
| MS.gene60329.t1 | MTR_4g052000 | 44.776 | 67 | 37 | 0 | 17 | 83 | 138 | 204 | 1.41e-11 | 65.9 |
| MS.gene60329.t1 | MTR_1g105110 | 44.776 | 67 | 37 | 0 | 17 | 83 | 142 | 208 | 3.40e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60329.t1 | AT3G48160 | 54.596 | 359 | 133 | 11 | 12 | 356 | 29 | 371 | 8.01e-113 | 333 |
| MS.gene60329.t1 | AT3G48160 | 54.469 | 358 | 133 | 11 | 12 | 355 | 29 | 370 | 4.94e-111 | 330 |
| MS.gene60329.t1 | AT3G01330 | 47.813 | 343 | 150 | 5 | 13 | 355 | 17 | 330 | 8.38e-96 | 289 |
| MS.gene60329.t1 | AT5G14960 | 42.045 | 352 | 168 | 9 | 13 | 354 | 9 | 334 | 2.17e-80 | 250 |
| MS.gene60329.t1 | AT5G14960 | 37.915 | 211 | 114 | 6 | 154 | 354 | 38 | 241 | 2.94e-34 | 127 |
| MS.gene60329.t1 | AT5G22220 | 44.776 | 67 | 37 | 0 | 17 | 83 | 129 | 195 | 4.51e-11 | 64.3 |
| MS.gene60329.t1 | AT5G22220 | 44.776 | 67 | 37 | 0 | 17 | 83 | 129 | 195 | 4.95e-11 | 64.3 |
Find 84 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTGGGAAAAGTTGAATT+AGG | 0.171110 | 8.2:-18943503 | None:intergenic |
| AAAGACGATGTTCGTTTAAT+TGG | 0.211016 | 8.2:+18942765 | MS.gene60329:CDS |
| CACCCTGACTTCCAGTGGTT+TGG | 0.211662 | 8.2:-18943436 | None:intergenic |
| GGCAATTCCTGTTGCTTTAC+AGG | 0.216414 | 8.2:+18943116 | MS.gene60329:CDS |
| TTCAGGTGGCTAGGCTTAAA+AGG | 0.224076 | 8.2:+18945071 | MS.gene60329:CDS |
| GACGATGCTGCCGCCAAATT+AGG | 0.253633 | 8.2:+18942792 | MS.gene60329:CDS |
| GTAATAATGAATACCTAATT+TGG | 0.256592 | 8.2:-18942805 | None:intergenic |
| ATTCAAAACAAAACGATTCT+AGG | 0.280464 | 8.2:+18945123 | MS.gene60329:CDS |
| TTTCCAGGTATACTGATTCT+TGG | 0.296038 | 8.2:-18943085 | None:intergenic |
| AGTATATTACCTTCTCAATA+AGG | 0.302257 | 8.2:-18944889 | None:intergenic |
| ACCCTGACTTCCAGTGGTTT+GGG | 0.311184 | 8.2:-18943435 | None:intergenic |
| ATCTGGGAAAAGTTGAATTA+GGG | 0.323897 | 8.2:-18943502 | None:intergenic |
| TACCTTCTCAATAAGGTTCA+TGG | 0.335894 | 8.2:-18944882 | None:intergenic |
| AATTGCCGCAAAACCTTTCC+AGG | 0.340573 | 8.2:-18943100 | None:intergenic |
| TGTTGCTTTACAGGAGCTTA+AGG | 0.369256 | 8.2:+18943125 | MS.gene60329:CDS |
| ATTCTCAGAGCTTCCAGCTT+TGG | 0.369624 | 8.2:-18945339 | None:intergenic |
| ATCCCAAACCACTGGAAGTC+AGG | 0.370120 | 8.2:+18943433 | MS.gene60329:CDS |
| ATTCTGACTTCCAGTGGGTT+GGG | 0.370825 | 8.2:-18943468 | None:intergenic |
| ACTTCAGCTAACTATCAATT+TGG | 0.373900 | 8.2:+18945293 | MS.gene60329:CDS |
| CATTCTGACTTCCAGTGGGT+TGG | 0.380743 | 8.2:-18943469 | None:intergenic |
| GAACAAGTCTGTTCTATTCC+TGG | 0.392480 | 8.2:-18945186 | None:intergenic |
| ATGAAAATGCTTAATTGCCT+TGG | 0.399936 | 8.2:-18945424 | None:intergenic |
| TCAATGTTCTCGAAAGCATC+GGG | 0.403367 | 8.2:+18942936 | MS.gene60329:CDS |
| AAGTGAAGCAGGTGCATGAC+TGG | 0.407996 | 8.2:+18945363 | MS.gene60329:CDS |
| ACTCACCTTCACATCTTCAT+TGG | 0.412295 | 8.2:-18943296 | None:intergenic |
| AACAAAACGATTCTAGGAAA+AGG | 0.426966 | 8.2:+18945129 | MS.gene60329:CDS |
| GCACATTTGCAATATCATAA+AGG | 0.434271 | 8.2:-18944853 | None:intergenic |
| GATTCTAGGAAAAGGGCGTT+TGG | 0.443366 | 8.2:+18945137 | MS.gene60329:CDS |
| TTAAGCTCCTGTAAAGCAAC+AGG | 0.443519 | 8.2:-18943123 | None:intergenic |
| ATACAAGAAAACCAGCATTC+AGG | 0.443643 | 8.2:+18945054 | MS.gene60329:CDS |
| AAATGATAGTGGGCTATGTC+TGG | 0.446224 | 8.2:+18945244 | MS.gene60329:CDS |
| CTGGCCTTGCAGCAAAAGTT+AGG | 0.448266 | 8.2:+18944828 | MS.gene60329:intron |
| AAGACAATGGAAAATGATAG+TGG | 0.463413 | 8.2:+18945233 | MS.gene60329:CDS |
| GATACAAAGGCAGGAGCAAA+AGG | 0.470114 | 8.2:-18945317 | None:intergenic |
| AAGCCTAGCCACCTGAATGC+TGG | 0.489317 | 8.2:-18945065 | None:intergenic |
| CTCTGAGAATAAAGTGAAGC+AGG | 0.496045 | 8.2:+18945352 | MS.gene60329:CDS |
| ACAAAACGATTCTAGGAAAA+GGG | 0.498407 | 8.2:+18945130 | MS.gene60329:CDS |
| ACACTTACTTGGTGCATAAG+AGG | 0.500577 | 8.2:-18942641 | None:intergenic |
| CCTGCCTTTGTATCCAAAGC+TGG | 0.506957 | 8.2:+18945326 | MS.gene60329:CDS |
| GAATAGAACAGACTTGTTCA+TGG | 0.511403 | 8.2:+18945190 | MS.gene60329:CDS |
| ACAACCTTGCTGCATCATCA+AGG | 0.524403 | 8.2:-18944685 | None:intergenic |
| AAGCCAAGAATCAGTATACC+TGG | 0.526713 | 8.2:+18943082 | MS.gene60329:CDS |
| ACTTGGTGCATAAGAGGCCG+AGG | 0.537885 | 8.2:-18942635 | None:intergenic |
| GTCAATGTTCTCGAAAGCAT+CGG | 0.541833 | 8.2:+18942935 | MS.gene60329:CDS |
| TCACAAACATAAGCTTTGCC+AGG | 0.545422 | 8.2:+18945168 | MS.gene60329:CDS |
| AAGAATCAGTATACCTGGAA+AGG | 0.546799 | 8.2:+18943087 | MS.gene60329:CDS |
| GATGCAGCAAGGTTGTTGCT+TGG | 0.550005 | 8.2:+18944692 | MS.gene60329:CDS |
| CCAGCTTTGGATACAAAGGC+AGG | 0.550221 | 8.2:-18945326 | None:intergenic |
| ATCGGAGGAAGAAGCAGCCA+TGG | 0.550392 | 8.2:-18942571 | None:intergenic |
| ATTGTCATTCTGACTTCCAG+TGG | 0.553060 | 8.2:-18943474 | None:intergenic |
| CTCCATGAACCTTATTGAGA+AGG | 0.554046 | 8.2:+18944880 | MS.gene60329:CDS |
| AAACCAGCATTCAGGTGGCT+AGG | 0.559723 | 8.2:+18945062 | MS.gene60329:CDS |
| TCGTAAGTGTGGTGTCGTGA+AGG | 0.561541 | 8.2:-18942597 | None:intergenic |
| TTGTCATTCTGACTTCCAGT+GGG | 0.561775 | 8.2:-18943473 | None:intergenic |
| TCAGGTGGCTAGGCTTAAAA+GGG | 0.561931 | 8.2:+18945072 | MS.gene60329:CDS |
| AATCTCAATTCTTCACAAGA+AGG | 0.561963 | 8.2:+18943271 | MS.gene60329:CDS |
| GTTCAGGTGTTGAGAGAAGA+CGG | 0.579277 | 8.2:+18942900 | MS.gene60329:intron |
| TCCCAAACCACTGGAAGTCA+GGG | 0.581818 | 8.2:+18943434 | MS.gene60329:CDS |
| TGATTCACCCTGACTTCCAG+TGG | 0.587552 | 8.2:-18943441 | None:intergenic |
| ATAATGAATACCTAATTTGG+CGG | 0.587773 | 8.2:-18942802 | None:intergenic |
| GCTTCCAGCTTTGGATACAA+AGG | 0.589316 | 8.2:-18945330 | None:intergenic |
| GGTATCGGATGAAGAGGATG+AGG | 0.589877 | 8.2:+18943400 | MS.gene60329:intron |
| AAAAGGGAAGACATTGAATG+AGG | 0.592429 | 8.2:+18945088 | MS.gene60329:CDS |
| AGTGAAGCAGGTGCATGACT+GGG | 0.592595 | 8.2:+18945364 | MS.gene60329:CDS |
| GATTTAGGTATCGGATGAAG+AGG | 0.593110 | 8.2:+18943394 | MS.gene60329:intron |
| TTTGTTTACGATCGTAAGTG+TGG | 0.596230 | 8.2:-18942608 | None:intergenic |
| AATAGAACAGACTTGTTCAT+GGG | 0.597678 | 8.2:+18945191 | MS.gene60329:CDS |
| GTGGTGTCGTGAAGGAGGAT+CGG | 0.598361 | 8.2:-18942589 | None:intergenic |
| GAATCATTATCCCAACCCAC+TGG | 0.603753 | 8.2:+18943458 | MS.gene60329:CDS |
| CAACCTTGCTGCATCATCAA+GGG | 0.604844 | 8.2:-18944684 | None:intergenic |
| CTTGGTGCATAAGAGGCCGA+GGG | 0.608163 | 8.2:-18942634 | None:intergenic |
| AGACAATGGAAAATGATAGT+GGG | 0.608266 | 8.2:+18945234 | MS.gene60329:CDS |
| GAATTGTTATCCCAAACCAC+TGG | 0.620803 | 8.2:+18943425 | MS.gene60329:CDS |
| TAAGTGTGGTGTCGTGAAGG+AGG | 0.625428 | 8.2:-18942594 | None:intergenic |
| CTTTAAGAAGCAAAAGACAA+TGG | 0.627305 | 8.2:+18945220 | MS.gene60329:CDS |
| CAAGAAAACCAGCATTCAGG+TGG | 0.647844 | 8.2:+18945057 | MS.gene60329:CDS |
| CTTCTCAATAAGGTTCATGG+AGG | 0.657302 | 8.2:-18944879 | None:intergenic |
| TGCCCTCAGTATCAAAACCA+AGG | 0.661299 | 8.2:+18945407 | MS.gene60329:CDS |
| GTGTCGTGAAGGAGGATCGG+AGG | 0.668512 | 8.2:-18942586 | None:intergenic |
| AGAACAGACTTGTTCATGGG+TGG | 0.672206 | 8.2:+18945194 | MS.gene60329:CDS |
| AGGTGCCAATGAAGATGTGA+AGG | 0.673625 | 8.2:+18943291 | MS.gene60329:CDS |
| TGTCTGGAAGATGTGAAACA+AGG | 0.683639 | 8.2:+18945260 | MS.gene60329:CDS |
| CAATGTTCTCGAAAGCATCG+GGG | 0.717872 | 8.2:+18942937 | MS.gene60329:CDS |
| TATCCCTTGATGATGCAGCA+AGG | 0.728015 | 8.2:+18944681 | MS.gene60329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATAAAAAAAAAAGG+TGG | - | chr8.2:18943011-18943030 | None:intergenic | 10.0% |
| !! | AATTAATAAAAAAAAAAGGT+GGG | - | chr8.2:18943010-18943029 | None:intergenic | 10.0% |
| !! | TTATAAAATTCAATAAACAA+TGG | - | chr8.2:18944396-18944415 | None:intergenic | 10.0% |
| !!! | GATATTTTTAAATCATTAAA+AGG | - | chr8.2:18943737-18943756 | None:intergenic | 10.0% |
| !!! | TTTATTGAATTTTATAATAC+TGG | + | chr8.2:18944399-18944418 | MS.gene60329:intron | 10.0% |
| !!! | TTTTATTAATTTTTGTTCAT+CGG | + | chr8.2:18943019-18943038 | MS.gene60329:intron | 10.0% |
| !!! | AAATGGTAACTTTTTTATTT+TGG | + | chr8.2:18943532-18943551 | MS.gene60329:intron | 15.0% |
| !!! | AATATAAAATGAAAAGTGTA+AGG | - | chr8.2:18944915-18944934 | None:intergenic | 15.0% |
| !!! | AATGGTAACTTTTTTATTTT+GGG | + | chr8.2:18943533-18943552 | MS.gene60329:intron | 15.0% |
| !!! | ATTGTTTTTCTTCAAATTTT+GGG | + | chr8.2:18943699-18943718 | MS.gene60329:intron | 15.0% |
| !!! | ATTTTTATGAGAAGTATAAT+TGG | + | chr8.2:18943341-18943360 | MS.gene60329:intron | 15.0% |
| !!! | TAATTGTTTTGATTTTGAAT+GGG | + | chr8.2:18943223-18943242 | MS.gene60329:intron | 15.0% |
| !!! | TATTGTTTTTCTTCAAATTT+TGG | + | chr8.2:18943698-18943717 | MS.gene60329:intron | 15.0% |
| !!! | TATTTTGTTTGGTTTTTTTT+AGG | + | chr8.2:18943047-18943066 | MS.gene60329:intron | 15.0% |
| !!! | TCACTAATTATTTATTGATT+CGG | + | chr8.2:18942709-18942728 | MS.gene60329:intron | 15.0% |
| !!! | TTAAGGTAATTTCAAATTTT+AGG | + | chr8.2:18943142-18943161 | MS.gene60329:intron | 15.0% |
| !! | AGAAGAATAAACTGTAAATA+TGG | - | chr8.2:18943655-18943674 | None:intergenic | 20.0% |
| !! | GTAATAATGAATACCTAATT+TGG | - | chr8.2:18942808-18942827 | None:intergenic | 20.0% |
| !! | TATTCTTCTAAATGCATTAT+AGG | + | chr8.2:18943666-18943685 | MS.gene60329:intron | 20.0% |
| !! | TCACAGAATTTAAATTAAGA+AGG | - | chr8.2:18943176-18943195 | None:intergenic | 20.0% |
| !! | TTAACTAAATTATCATTCTC+TGG | - | chr8.2:18944358-18944377 | None:intergenic | 20.0% |
| !! | TTTAAGTAATTTCGTGATTT+AGG | + | chr8.2:18943379-18943398 | MS.gene60329:intron | 20.0% |
| !!! | ATAGCAAAATTTTTGAAACA+TGG | + | chr8.2:18943829-18943848 | MS.gene60329:intron | 20.0% |
| !!! | GTAATTGTTTTGATTTTGAA+TGG | + | chr8.2:18943222-18943241 | MS.gene60329:intron | 20.0% |
| !!! | TAGCAAAATTTTTGAAACAT+GGG | + | chr8.2:18943830-18943849 | MS.gene60329:intron | 20.0% |
| ! | AATTTAGTTAAAGATGTGCA+TGG | + | chr8.2:18944367-18944386 | MS.gene60329:intron | 25.0% |
| ! | AGTATATTACCTTCTCAATA+AGG | - | chr8.2:18944892-18944911 | None:intergenic | 25.0% |
| ! | AGTTTAACATATCAGATGTA+TGG | - | chr8.2:18944619-18944638 | None:intergenic | 25.0% |
| ! | ATAAAGAAATCAATGCAAAG+AGG | - | chr8.2:18944991-18945010 | None:intergenic | 25.0% |
| ! | ATAATGAATACCTAATTTGG+CGG | - | chr8.2:18942805-18942824 | None:intergenic | 25.0% |
| ! | ATTAAAGACATAAATCAGCT+TGG | - | chr8.2:18944589-18944608 | None:intergenic | 25.0% |
| ! | ATTCAAAACAAAACGATTCT+AGG | + | chr8.2:18945123-18945142 | MS.gene60329:CDS | 25.0% |
| ! | CTAAGTGTTTGTTTAGATTA+AGG | - | chr8.2:18944103-18944122 | None:intergenic | 25.0% |
| ! | GTTAACGAAAACAAACAAAT+TGG | - | chr8.2:18944769-18944788 | None:intergenic | 25.0% |
| ! | TAATTTCGTGATTTAGGTAT+CGG | + | chr8.2:18943385-18943404 | MS.gene60329:intron | 25.0% |
| ! | TGCAATTTGCAAATTAAAGT+TGG | - | chr8.2:18943888-18943907 | None:intergenic | 25.0% |
| !! | AACCCTTATTTAGTTAACTT+GGG | - | chr8.2:18943977-18943996 | None:intergenic | 25.0% |
| !! | AGAAGTATAATTGGTTTAGT+AGG | + | chr8.2:18943350-18943369 | MS.gene60329:intron | 25.0% |
| !! | GAAGTATAATTGGTTTAGTA+GGG | + | chr8.2:18943351-18943370 | MS.gene60329:intron | 25.0% |
| !! | TAGGATGTTTTCTTTTCTTA+GGG | + | chr8.2:18944253-18944272 | MS.gene60329:intron | 25.0% |
| !! | TTAGGATGTTTTCTTTTCTT+AGG | + | chr8.2:18944252-18944271 | MS.gene60329:intron | 25.0% |
| !!! | AAATTTTTGAAACATGGGTT+TGG | + | chr8.2:18943835-18943854 | MS.gene60329:intron | 25.0% |
| !!! | ATCAGATTGTTCAAGTTTTT+AGG | + | chr8.2:18944234-18944253 | MS.gene60329:intron | 25.0% |
| !!! | CATCGGTTTTTTATTTTGTT+TGG | + | chr8.2:18943036-18943055 | MS.gene60329:intron | 25.0% |
| !!! | TTACCATTTTTCAAAGATCT+GGG | - | chr8.2:18943521-18943540 | None:intergenic | 25.0% |
| !!! | TTGATTTTGAATGGGTTTTT+AGG | + | chr8.2:18943231-18943250 | MS.gene60329:intron | 25.0% |
| !!! | TTGTTTTGTTCGAATGTAAA+TGG | - | chr8.2:18944288-18944307 | None:intergenic | 25.0% |
| AAAGACGATGTTCGTTTAAT+TGG | + | chr8.2:18942765-18942784 | MS.gene60329:CDS | 30.0% | |
| AACAGTTGTTAATGATGTTC+AGG | + | chr8.2:18942884-18942903 | MS.gene60329:intron | 30.0% | |
| AACCCCAAGTTAACTAAATA+AGG | + | chr8.2:18943971-18943990 | MS.gene60329:intron | 30.0% | |
| AAGACAATGGAAAATGATAG+TGG | + | chr8.2:18945233-18945252 | MS.gene60329:CDS | 30.0% | |
| AATCTCAATTCTTCACAAGA+AGG | + | chr8.2:18943271-18943290 | MS.gene60329:CDS | 30.0% | |
| ACATGAGGGAACAAAAATTA+AGG | - | chr8.2:18942986-18943005 | None:intergenic | 30.0% | |
| ACCCCAAGTTAACTAAATAA+GGG | + | chr8.2:18943972-18943991 | MS.gene60329:intron | 30.0% | |
| ACTTCAGCTAACTATCAATT+TGG | + | chr8.2:18945293-18945312 | MS.gene60329:CDS | 30.0% | |
| AGACAATGGAAAATGATAGT+GGG | + | chr8.2:18945234-18945253 | MS.gene60329:CDS | 30.0% | |
| ATCTGGGAAAAGTTGAATTA+GGG | - | chr8.2:18943505-18943524 | None:intergenic | 30.0% | |
| GCACATTTGCAATATCATAA+AGG | - | chr8.2:18944856-18944875 | None:intergenic | 30.0% | |
| TAAGAAAAACTAGAGTAGAG+TGG | + | chr8.2:18943775-18943794 | MS.gene60329:intron | 30.0% | |
| TGAACAATCTGATGAGAATT+GGG | - | chr8.2:18944227-18944246 | None:intergenic | 30.0% | |
| TTGAACAATCTGATGAGAAT+TGG | - | chr8.2:18944228-18944247 | None:intergenic | 30.0% | |
| ! | AACAAAACGATTCTAGGAAA+AGG | + | chr8.2:18945129-18945148 | MS.gene60329:CDS | 30.0% |
| ! | AATAGAACAGACTTGTTCAT+GGG | + | chr8.2:18945191-18945210 | MS.gene60329:CDS | 30.0% |
| ! | ACAAAACGATTCTAGGAAAA+GGG | + | chr8.2:18945130-18945149 | MS.gene60329:CDS | 30.0% |
| ! | ACCCTTATTTAGTTAACTTG+GGG | - | chr8.2:18943976-18943995 | None:intergenic | 30.0% |
| ! | CTTTAAGAAGCAAAAGACAA+TGG | + | chr8.2:18945220-18945239 | MS.gene60329:CDS | 30.0% |
| ! | GAACCCTTATTTAGTTAACT+TGG | - | chr8.2:18943978-18943997 | None:intergenic | 30.0% |
| ! | GGCGATAATTTGAATTTTTG+AGG | + | chr8.2:18943796-18943815 | MS.gene60329:intron | 30.0% |
| ! | TTAATGTTTTGCAGACAGAA+GGG | + | chr8.2:18944479-18944498 | MS.gene60329:intron | 30.0% |
| ! | TTTAATGTTTTGCAGACAGA+AGG | + | chr8.2:18944478-18944497 | MS.gene60329:intron | 30.0% |
| ! | TTTCCCAGATCTTTGAAAAA+TGG | + | chr8.2:18943515-18943534 | MS.gene60329:CDS | 30.0% |
| ! | TTTTCTTGTATCTGTGGTAT+GGG | - | chr8.2:18945045-18945064 | None:intergenic | 30.0% |
| !! | GTTACCATTTTTCAAAGATC+TGG | - | chr8.2:18943522-18943541 | None:intergenic | 30.0% |
| AAAAAAAAGGTGGGAACATG+AGG | - | chr8.2:18943001-18943020 | None:intergenic | 35.0% | |
| AAAAAAAGGTGGGAACATGA+GGG | - | chr8.2:18943000-18943019 | None:intergenic | 35.0% | |
| AAAAGGGAAGACATTGAATG+AGG | + | chr8.2:18945088-18945107 | MS.gene60329:CDS | 35.0% | |
| AACATATCAGATGTATGGCA+TGG | - | chr8.2:18944614-18944633 | None:intergenic | 35.0% | |
| AAGAATCAGTATACCTGGAA+AGG | + | chr8.2:18943087-18943106 | MS.gene60329:CDS | 35.0% | |
| ACACACACATTAATACGTTG+TGG | + | chr8.2:18944049-18944068 | MS.gene60329:intron | 35.0% | |
| ATACAAGAAAACCAGCATTC+AGG | + | chr8.2:18945054-18945073 | MS.gene60329:CDS | 35.0% | |
| ATTAATGTGTGTGTAGACTG+AGG | - | chr8.2:18944043-18944062 | None:intergenic | 35.0% | |
| CAAGAGACATAATACAGGTA+TGG | - | chr8.2:18944156-18944175 | None:intergenic | 35.0% | |
| CACACACATTAATACGTTGT+GGG | + | chr8.2:18944050-18944069 | MS.gene60329:intron | 35.0% | |
| CTTGGAATGAACAAGAAACT+AGG | - | chr8.2:18944571-18944590 | None:intergenic | 35.0% | |
| GAGTAAGAGTAACACTTACT+TGG | - | chr8.2:18942655-18942674 | None:intergenic | 35.0% | |
| GATCGTAAACAAAAATCCCT+CGG | + | chr8.2:18942618-18942637 | MS.gene60329:CDS | 35.0% | |
| GATCTGGGAAAAGTTGAATT+AGG | - | chr8.2:18943506-18943525 | None:intergenic | 35.0% | |
| TACCTTCTCAATAAGGTTCA+TGG | - | chr8.2:18944885-18944904 | None:intergenic | 35.0% | |
| TATAATACTGGAGTCGTATG+TGG | + | chr8.2:18944411-18944430 | MS.gene60329:intron | 35.0% | |
| TTTGTTTACGATCGTAAGTG+TGG | - | chr8.2:18942611-18942630 | None:intergenic | 35.0% | |
| ! | GAATAGAACAGACTTGTTCA+TGG | + | chr8.2:18945190-18945209 | MS.gene60329:CDS | 35.0% |
| ! | GTTTTCTTGTATCTGTGGTA+TGG | - | chr8.2:18945046-18945065 | None:intergenic | 35.0% |
| ! | TACGTTGTGGGTTATAGTTA+AGG | + | chr8.2:18944062-18944081 | MS.gene60329:intron | 35.0% |
| !! | GTTTTTAGGAAGAGGGTTTA+TGG | + | chr8.2:18943245-18943264 | MS.gene60329:intron | 35.0% |
| !! | TGAATGGGTTTTTAGGAAGA+GGG | + | chr8.2:18943238-18943257 | MS.gene60329:intron | 35.0% |
| !! | TTATGAACCTGTGTTTTTGC+TGG | + | chr8.2:18943574-18943593 | MS.gene60329:intron | 35.0% |
| !! | TTGAATGGGTTTTTAGGAAG+AGG | + | chr8.2:18943237-18943256 | MS.gene60329:intron | 35.0% |
| !! | TTTCCAGGTATACTGATTCT+TGG | - | chr8.2:18943088-18943107 | None:intergenic | 35.0% |
| AACAACACCAGCAAAAACAC+AGG | - | chr8.2:18943584-18943603 | None:intergenic | 40.0% | |
| AAGCCAAGAATCAGTATACC+TGG | + | chr8.2:18943082-18943101 | MS.gene60329:CDS | 40.0% | |
| ACTCACCTTCACATCTTCAT+TGG | - | chr8.2:18943299-18943318 | None:intergenic | 40.0% | |
| AGACAGAAGGGAAAAATCTC+TGG | + | chr8.2:18944491-18944510 | MS.gene60329:intron | 40.0% | |
| ATTGTCATTCTGACTTCCAG+TGG | - | chr8.2:18943477-18943496 | None:intergenic | 40.0% | |
| CTATGCTTACCCAGCAAAAT+TGG | - | chr8.2:18944004-18944023 | None:intergenic | 40.0% | |
| CTCCATGAACCTTATTGAGA+AGG | + | chr8.2:18944880-18944899 | MS.gene60329:CDS | 40.0% | |
| CTTCTCAATAAGGTTCATGG+AGG | - | chr8.2:18944882-18944901 | None:intergenic | 40.0% | |
| GAACAAGTCTGTTCTATTCC+TGG | - | chr8.2:18945189-18945208 | None:intergenic | 40.0% | |
| GAATTGTTATCCCAAACCAC+TGG | + | chr8.2:18943425-18943444 | MS.gene60329:CDS | 40.0% | |
| GTGCACAAGAGACATAATAC+AGG | - | chr8.2:18944161-18944180 | None:intergenic | 40.0% | |
| TCACAAACATAAGCTTTGCC+AGG | + | chr8.2:18945168-18945187 | MS.gene60329:CDS | 40.0% | |
| TGAGAATTGGGATTGTTCTG+AGG | - | chr8.2:18944215-18944234 | None:intergenic | 40.0% | |
| TGTCTGGAAGATGTGAAACA+AGG | + | chr8.2:18945260-18945279 | MS.gene60329:CDS | 40.0% | |
| TTAAGCTCCTGTAAAGCAAC+AGG | - | chr8.2:18943126-18943145 | None:intergenic | 40.0% | |
| TTGTCATTCTGACTTCCAGT+GGG | - | chr8.2:18943476-18943495 | None:intergenic | 40.0% | |
| ! | AGGGTTCAATCCAATTTTGC+TGG | + | chr8.2:18943991-18944010 | MS.gene60329:intron | 40.0% |
| ! | CAATTTTGCTGGGTAAGCAT+AGG | + | chr8.2:18944002-18944021 | MS.gene60329:intron | 40.0% |
| ! | CTCTGAGAATAAAGTGAAGC+AGG | + | chr8.2:18945352-18945371 | MS.gene60329:CDS | 40.0% |
| ! | GGGTTCAATCCAATTTTGCT+GGG | + | chr8.2:18943992-18944011 | MS.gene60329:intron | 40.0% |
| ! | GTATACCTGGAAAGGTTTTG+CGG | + | chr8.2:18943095-18943114 | MS.gene60329:CDS | 40.0% |
| ! | GTCAATGTTCTCGAAAGCAT+CGG | + | chr8.2:18942935-18942954 | MS.gene60329:CDS | 40.0% |
| ! | TTTTCACTTACAGTCCCATC+TGG | + | chr8.2:18944809-18944828 | MS.gene60329:intron | 40.0% |
| !! | AAATGATAGTGGGCTATGTC+TGG | + | chr8.2:18945244-18945263 | MS.gene60329:CDS | 40.0% |
| !! | ACACTTACTTGGTGCATAAG+AGG | - | chr8.2:18942644-18942663 | None:intergenic | 40.0% |
| !! | GATTTAGGTATCGGATGAAG+AGG | + | chr8.2:18943394-18943413 | MS.gene60329:intron | 40.0% |
| !! | TCAATGTTCTCGAAAGCATC+GGG | + | chr8.2:18942936-18942955 | MS.gene60329:CDS | 40.0% |
| !! | TGTTGCTTTACAGGAGCTTA+AGG | + | chr8.2:18943125-18943144 | MS.gene60329:CDS | 40.0% |
| !!! | TGCCTTGGTTTTGATACTGA+GGG | - | chr8.2:18945412-18945431 | None:intergenic | 40.0% |
| !!! | TGCTGGTTTTCTTGTATCTG+TGG | - | chr8.2:18945051-18945070 | None:intergenic | 40.0% |
| !!! | TTGCCTTGGTTTTGATACTG+AGG | - | chr8.2:18945413-18945432 | None:intergenic | 40.0% |
| !!! | TTGGCACTGATTGCATTTTG+AGG | + | chr8.2:18944442-18944461 | MS.gene60329:intron | 40.0% |
| !!! | TTTTGCTGGTGTTGTTGTTG+TGG | + | chr8.2:18943588-18943607 | MS.gene60329:intron | 40.0% |
| AATTGCCGCAAAACCTTTCC+AGG | - | chr8.2:18943103-18943122 | None:intergenic | 45.0% | |
| ACAACCTTGCTGCATCATCA+AGG | - | chr8.2:18944688-18944707 | None:intergenic | 45.0% | |
| AGGTGCCAATGAAGATGTGA+AGG | + | chr8.2:18943291-18943310 | MS.gene60329:CDS | 45.0% | |
| ATTCTCAGAGCTTCCAGCTT+TGG | - | chr8.2:18945342-18945361 | None:intergenic | 45.0% | |
| CAACCTTGCTGCATCATCAA+GGG | - | chr8.2:18944687-18944706 | None:intergenic | 45.0% | |
| CAAGAAAACCAGCATTCAGG+TGG | + | chr8.2:18945057-18945076 | MS.gene60329:CDS | 45.0% | |
| GAATCATTATCCCAACCCAC+TGG | + | chr8.2:18943458-18943477 | MS.gene60329:CDS | 45.0% | |
| GATACAAAGGCAGGAGCAAA+AGG | - | chr8.2:18945320-18945339 | None:intergenic | 45.0% | |
| GTCGTATGTGGACTTAGACT+TGG | + | chr8.2:18944423-18944442 | MS.gene60329:intron | 45.0% | |
| TCAGGTGGCTAGGCTTAAAA+GGG | + | chr8.2:18945072-18945091 | MS.gene60329:CDS | 45.0% | |
| TGCCCTCAGTATCAAAACCA+AGG | + | chr8.2:18945407-18945426 | MS.gene60329:CDS | 45.0% | |
| TTCAGGTGGCTAGGCTTAAA+AGG | + | chr8.2:18945071-18945090 | MS.gene60329:CDS | 45.0% | |
| ! | AGAACAGACTTGTTCATGGG+TGG | + | chr8.2:18945194-18945213 | MS.gene60329:CDS | 45.0% |
| ! | ATTCTGACTTCCAGTGGGTT+GGG | - | chr8.2:18943471-18943490 | None:intergenic | 45.0% |
| !! | CAATGTTCTCGAAAGCATCG+GGG | + | chr8.2:18942937-18942956 | MS.gene60329:CDS | 45.0% |
| !! | GATTCTAGGAAAAGGGCGTT+TGG | + | chr8.2:18945137-18945156 | MS.gene60329:CDS | 45.0% |
| !! | GCTTCCAGCTTTGGATACAA+AGG | - | chr8.2:18945333-18945352 | None:intergenic | 45.0% |
| !! | GGCAATTCCTGTTGCTTTAC+AGG | + | chr8.2:18943116-18943135 | MS.gene60329:CDS | 45.0% |
| !! | GTTCAGGTGTTGAGAGAAGA+CGG | + | chr8.2:18942900-18942919 | MS.gene60329:intron | 45.0% |
| !! | TATCCCTTGATGATGCAGCA+AGG | + | chr8.2:18944681-18944700 | MS.gene60329:CDS | 45.0% |
| !! | CAAAAATTAATAAAAAAAAA+AGG | - | chr8.2:18943014-18943033 | None:intergenic | 5.0% |
| !! | TAAAAAAAAATAAAACAAAT+TGG | + | chr8.2:18942852-18942871 | MS.gene60329:intron | 5.0% |
| AAACCAGCATTCAGGTGGCT+AGG | + | chr8.2:18945062-18945081 | MS.gene60329:CDS | 50.0% | |
| AAGTGAAGCAGGTGCATGAC+TGG | + | chr8.2:18945363-18945382 | MS.gene60329:CDS | 50.0% | |
| ACCCTGACTTCCAGTGGTTT+GGG | - | chr8.2:18943438-18943457 | None:intergenic | 50.0% | |
| AGTGAAGCAGGTGCATGACT+GGG | + | chr8.2:18945364-18945383 | MS.gene60329:CDS | 50.0% | |
| ATCCCAAACCACTGGAAGTC+AGG | + | chr8.2:18943433-18943452 | MS.gene60329:CDS | 50.0% | |
| CATTCTGACTTCCAGTGGGT+TGG | - | chr8.2:18943472-18943491 | None:intergenic | 50.0% | |
| CCTGCCTTTGTATCCAAAGC+TGG | + | chr8.2:18945326-18945345 | MS.gene60329:CDS | 50.0% | |
| GATGCAGCAAGGTTGTTGCT+TGG | + | chr8.2:18944692-18944711 | MS.gene60329:CDS | 50.0% | |
| TAACCACTCTACTCTGCAGC+TGG | + | chr8.2:18944652-18944671 | MS.gene60329:intron | 50.0% | |
| TCCCAAACCACTGGAAGTCA+GGG | + | chr8.2:18943434-18943453 | MS.gene60329:CDS | 50.0% | |
| TGATTCACCCTGACTTCCAG+TGG | - | chr8.2:18943444-18943463 | None:intergenic | 50.0% | |
| TTTCCAGCTGCAGAGTAGAG+TGG | - | chr8.2:18944658-18944677 | None:intergenic | 50.0% | |
| ! | ACTTTTGCTGCAAGGCCAGA+TGG | - | chr8.2:18944827-18944846 | None:intergenic | 50.0% |
| ! | CTTTTGCTGCAAGGCCAGAT+GGG | - | chr8.2:18944826-18944845 | None:intergenic | 50.0% |
| ! | GGTATCGGATGAAGAGGATG+AGG | + | chr8.2:18943400-18943419 | MS.gene60329:intron | 50.0% |
| !! | CCAGCTTTGGATACAAAGGC+AGG | - | chr8.2:18945329-18945348 | None:intergenic | 50.0% |
| !! | CTGGCCTTGCAGCAAAAGTT+AGG | + | chr8.2:18944828-18944847 | MS.gene60329:intron | 50.0% |
| !! | TAAGTGTGGTGTCGTGAAGG+AGG | - | chr8.2:18942597-18942616 | None:intergenic | 50.0% |
| !! | TCGTAAGTGTGGTGTCGTGA+AGG | - | chr8.2:18942600-18942619 | None:intergenic | 50.0% |
| AAGCCTAGCCACCTGAATGC+TGG | - | chr8.2:18945068-18945087 | None:intergenic | 55.0% | |
| CACCCTGACTTCCAGTGGTT+TGG | - | chr8.2:18943439-18943458 | None:intergenic | 55.0% | |
| CTGGGTAAGCATAGGTCGAG+GGG | + | chr8.2:18944010-18944029 | MS.gene60329:intron | 55.0% | |
| GACGATGCTGCCGCCAAATT+AGG | + | chr8.2:18942792-18942811 | MS.gene60329:CDS | 55.0% | |
| GCTGGGTAAGCATAGGTCGA+GGG | + | chr8.2:18944009-18944028 | MS.gene60329:intron | 55.0% | |
| TGCTGGGTAAGCATAGGTCG+AGG | + | chr8.2:18944008-18944027 | MS.gene60329:intron | 55.0% | |
| ! | CTTGGTGCATAAGAGGCCGA+GGG | - | chr8.2:18942637-18942656 | None:intergenic | 55.0% |
| ! | GGCGCCTAACTTTTGCTGCA+AGG | - | chr8.2:18944835-18944854 | None:intergenic | 55.0% |
| !! | ACTTGGTGCATAAGAGGCCG+AGG | - | chr8.2:18942638-18942657 | None:intergenic | 55.0% |
| !! | GTGGTGTCGTGAAGGAGGAT+CGG | - | chr8.2:18942592-18942611 | None:intergenic | 55.0% |
| GTGTCGTGAAGGAGGATCGG+AGG | - | chr8.2:18942589-18942608 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 18942573 | 18945436 | 18942573 | ID=MS.gene60329 |
| chr8.2 | mRNA | 18942573 | 18945436 | 18942573 | ID=MS.gene60329.t1;Parent=MS.gene60329 |
| chr8.2 | exon | 18942573 | 18942655 | 18942573 | ID=MS.gene60329.t1.exon1;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18942573 | 18942655 | 18942573 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18942746 | 18942813 | 18942746 | ID=MS.gene60329.t1.exon2;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18942746 | 18942813 | 18942746 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18942906 | 18942958 | 18942906 | ID=MS.gene60329.t1.exon3;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18942906 | 18942958 | 18942906 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18943069 | 18943146 | 18943069 | ID=MS.gene60329.t1.exon4;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18943069 | 18943146 | 18943069 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18943253 | 18943312 | 18943253 | ID=MS.gene60329.t1.exon5;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18943253 | 18943312 | 18943253 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18943401 | 18943536 | 18943401 | ID=MS.gene60329.t1.exon6;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18943401 | 18943536 | 18943401 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18944493 | 18944557 | 18944493 | ID=MS.gene60329.t1.exon7;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18944493 | 18944557 | 18944493 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18944671 | 18944743 | 18944671 | ID=MS.gene60329.t1.exon8;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18944671 | 18944743 | 18944671 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18944840 | 18944901 | 18944840 | ID=MS.gene60329.t1.exon9;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18944840 | 18944901 | 18944840 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| chr8.2 | exon | 18945041 | 18945436 | 18945041 | ID=MS.gene60329.t1.exon10;Parent=MS.gene60329.t1 |
| chr8.2 | CDS | 18945041 | 18945436 | 18945041 | ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1 |
| Gene Sequence |
| Protein sequence |
