AlfalfaGEDB | MS.gene60329

M. sativa cultivar XinJiangDaYe / MS.gene60329

KEGG: K09391
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005667 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02319.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60329.t1	AES91128.2	98.6	358	4	1	1	357	1	358	1.60E-166	595.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60329.t1	Q8LSZ4	55.2	364	135	9	5	355	22	370	4.4e-80	299.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60329.t1	G7JNS6	98.6	358	4	1	1	357	1	358	1.2e-166	595.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene60329.t1	TF	E2F-DP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049251	MS.gene60329	0.810653	1.04E-50	-1.69E-46
MS.gene053173	MS.gene60329	0.8073	5.41E-50	-1.69E-46
MS.gene053348	MS.gene60329	0.822057	2.90E-53	-1.69E-46
MS.gene054593	MS.gene60329	0.813015	3.17E-51	-1.69E-46
MS.gene054633	MS.gene60329	0.802571	5.27E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60329.t1	MTR_4g106540	98.603	358	4	1	1	357	1	358	0.0	729
MS.gene60329.t1	MTR_4g106540	98.319	357	5	1	1	356	1	357	0.0	726
MS.gene60329.t1	MTR_4g106540	96.703	364	5	2	1	357	1	364	0.0	720
MS.gene60329.t1	MTR_4g106540	98.230	339	5	1	1	338	1	339	0.0	682
MS.gene60329.t1	MTR_4g106540	96.232	345	6	2	1	338	1	345	0.0	674
MS.gene60329.t1	MTR_3g113800	46.377	69	37	0	14	82	99	167	9.77e-12	65.5
MS.gene60329.t1	MTR_3g113800	46.377	69	37	0	14	82	99	167	1.35e-11	65.5
MS.gene60329.t1	MTR_4g052000	44.776	67	37	0	17	83	138	204	1.41e-11	65.9
MS.gene60329.t1	MTR_1g105110	44.776	67	37	0	17	83	142	208	3.40e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60329.t1	AT3G48160	54.596	359	133	11	12	356	29	371	8.01e-113	333
MS.gene60329.t1	AT3G48160	54.469	358	133	11	12	355	29	370	4.94e-111	330
MS.gene60329.t1	AT3G01330	47.813	343	150	5	13	355	17	330	8.38e-96	289
MS.gene60329.t1	AT5G14960	42.045	352	168	9	13	354	9	334	2.17e-80	250
MS.gene60329.t1	AT5G14960	37.915	211	114	6	154	354	38	241	2.94e-34	127
MS.gene60329.t1	AT5G22220	44.776	67	37	0	17	83	129	195	4.51e-11	64.3
MS.gene60329.t1	AT5G22220	44.776	67	37	0	17	83	129	195	4.95e-11	64.3

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Find 84 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAAGACATTGAATG+AGG	0.592429	8.2:+18945088	MS.gene60329:CDS
AAACCAGCATTCAGGTGGCT+AGG	0.559723	8.2:+18945062	MS.gene60329:CDS
AAAGACGATGTTCGTTTAAT+TGG	0.211016	8.2:+18942765	MS.gene60329:CDS
AAATGATAGTGGGCTATGTC+TGG	0.446224	8.2:+18945244	MS.gene60329:CDS
AACAAAACGATTCTAGGAAA+AGG	0.426966	8.2:+18945129	MS.gene60329:CDS
AAGAATCAGTATACCTGGAA+AGG	0.546799	8.2:+18943087	MS.gene60329:CDS
AAGACAATGGAAAATGATAG+TGG	0.463413	8.2:+18945233	MS.gene60329:CDS
AAGCCAAGAATCAGTATACC+TGG	0.526713	8.2:+18943082	MS.gene60329:CDS
AAGCCTAGCCACCTGAATGC+TGG	0.489317	8.2:-18945065	None:intergenic
AAGTGAAGCAGGTGCATGAC+TGG	0.407996	8.2:+18945363	MS.gene60329:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACGATGTTCGTTTAAT+TGG	+	chr8.2:18942765-18942784	MS.gene60329:CDS	30.0%
AACAGTTGTTAATGATGTTC+AGG	+	chr8.2:18942884-18942903	MS.gene60329:intron	30.0%
AACCCCAAGTTAACTAAATA+AGG	+	chr8.2:18943971-18943990	MS.gene60329:intron	30.0%
AAGACAATGGAAAATGATAG+TGG	+	chr8.2:18945233-18945252	MS.gene60329:CDS	30.0%
AATCTCAATTCTTCACAAGA+AGG	+	chr8.2:18943271-18943290	MS.gene60329:CDS	30.0%
ACATGAGGGAACAAAAATTA+AGG	-	chr8.2:18942986-18943005	None:intergenic	30.0%
ACCCCAAGTTAACTAAATAA+GGG	+	chr8.2:18943972-18943991	MS.gene60329:intron	30.0%
ACTTCAGCTAACTATCAATT+TGG	+	chr8.2:18945293-18945312	MS.gene60329:CDS	30.0%
AGACAATGGAAAATGATAGT+GGG	+	chr8.2:18945234-18945253	MS.gene60329:CDS	30.0%
ATCTGGGAAAAGTTGAATTA+GGG	-	chr8.2:18943505-18943524	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	18942573	18945436	18942573	ID=MS.gene60329
chr8.2	mRNA	18942573	18945436	18942573	ID=MS.gene60329.t1;Parent=MS.gene60329
chr8.2	exon	18942573	18942655	18942573	ID=MS.gene60329.t1.exon1;Parent=MS.gene60329.t1
chr8.2	CDS	18942573	18942655	18942573	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18942746	18942813	18942746	ID=MS.gene60329.t1.exon2;Parent=MS.gene60329.t1
chr8.2	CDS	18942746	18942813	18942746	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18942906	18942958	18942906	ID=MS.gene60329.t1.exon3;Parent=MS.gene60329.t1
chr8.2	CDS	18942906	18942958	18942906	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18943069	18943146	18943069	ID=MS.gene60329.t1.exon4;Parent=MS.gene60329.t1
chr8.2	CDS	18943069	18943146	18943069	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18943253	18943312	18943253	ID=MS.gene60329.t1.exon5;Parent=MS.gene60329.t1
chr8.2	CDS	18943253	18943312	18943253	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18943401	18943536	18943401	ID=MS.gene60329.t1.exon6;Parent=MS.gene60329.t1
chr8.2	CDS	18943401	18943536	18943401	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18944493	18944557	18944493	ID=MS.gene60329.t1.exon7;Parent=MS.gene60329.t1
chr8.2	CDS	18944493	18944557	18944493	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18944671	18944743	18944671	ID=MS.gene60329.t1.exon8;Parent=MS.gene60329.t1
chr8.2	CDS	18944671	18944743	18944671	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18944840	18944901	18944840	ID=MS.gene60329.t1.exon9;Parent=MS.gene60329.t1
chr8.2	CDS	18944840	18944901	18944840	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1
chr8.2	exon	18945041	18945436	18945041	ID=MS.gene60329.t1.exon10;Parent=MS.gene60329.t1
chr8.2	CDS	18945041	18945436	18945041	ID=cds.MS.gene60329.t1;Parent=MS.gene60329.t1

Gene Sequence

>MS.gene60329

ATGGCTGCTTCTTCCTCCGATCCTCCTTCACGACACCACACTTACGATCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAAGTAAGTGTTACTCTTACTCTTCTTCTCTTCTCTCTCTCACTTAATTCTTTTATTCACTAATTATTTATTGATTCGGTTTATGAATTGCAGTTTCTTGAGCTTGTATAACAAAGACGATGTTCGTTTAATTGGTCTCGACGATGCTGCCGCCAAATTAGGTATTCATTATTACGATTCACTTTTTAGTTTTTTAATTTAAAAAAAAATAAAACAAATTGGATCTAATACAACAGTTGTTAATGATGTTCAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTCTCGAAAGCATCGGGGTTCGTTTATTTTTTATTTTTTAACCTTAATTTTTGTTCCCTCATGTTCCCACCTTTTTTTTTTATTAATTTTTGTTCATCGGTTTTTTATTTTGTTTGGTTTTTTTTAGGTTCTTGCAAGAAAAGCCAAGAATCAGTATACCTGGAAAGGTTTTGCGGCAATTCCTGTTGCTTTACAGGAGCTTAAGGTAATTTCAAATTTTAGGATTCAGTTCCTTCTTAATTTAAATTCTGTGATTCAATAATTGTAATTTATTTTTTATGTAATTGTTTTGATTTTGAATGGGTTTTTAGGAAGAGGGTTTATGGCAGAATCTCAATTCTTCACAAGAAGGTGCCAATGAAGATGTGAAGGTGAGTTCTATTTTCACATACATAATTTATTTTTATGAGAAGTATAATTGGTTTAGTAGGGTTGTTTTTAAGTAATTTCGTGATTTAGGTATCGGATGAAGAGGATGAGGACGAATTGTTATCCCAAACCACTGGAAGTCAGGGTGAATCATTATCCCAACCCACTGGAAGTCAGAATGACAATCTAAACCCTAATTCAACTTTTCCCAGATCTTTGAAAAATGGTAACTTTTTTATTTTGGGTACAAACATGTTTAAGATTTATGAACCTGTGTTTTTGCTGGTGTTGTTGTTGTGGTATATGATGTTTGTTCTGTCTTGTAATGTTTTACTAAAAAACCATATTTACAGTTTATTCTTCTAAATGCATTATAGGTCAGTAGATTATTGTTTTTCTTCAAATTTTGGGTCACTGAATTAGCCTTTTAATGATTTAAAAATATCATCATAATTTTGACTTTTTAAGAAAAACTAGAGTAGAGTGGCGATAATTTGAATTTTTGAGGAACTACTTTAATAGCAAAATTTTTGAAACATGGGTTTGGAACAAACTTTTATAACTTAAGTTTTAGCCAACTTTAATTTGCAAATTGCAAAAACAATTCTCTCTGCATACTATTAATAATTATGTTTGATGACAAAAAATGTGCTTTTAAATAACCCCAAGTTAACTAAATAAGGGTTCAATCCAATTTTGCTGGGTAAGCATAGGTCGAGGGGTCTTTAACCTCAGTCTACACACACATTAATACGTTGTGGGTTATAGTTAAGGTGCTATTGTACTCTACCTTAATCTAAACAAACACTTAGTTGTTAGAGTTTTCTTCTACATATTGTATGCCATACCTGTATTATGTCTCTTGTGCACGATTGCGAGAGATTTATTTTTACTTTTGTATCCTCAGAACAATCCCAATTCTCATCAGATTGTTCAAGTTTTTAGGATGTTTTCTTTTCTTAGGGTTATGAATACCATTTACATTCGAACAAAACAACTTTTAATATCGTATGATACTGTTAGTGATTATGACTGTTATTAGCACCAGAGAATGATAATTTAGTTAAAGATGTGCATGGATACCATTGTTTATTGAATTTTATAATACTGGAGTCGTATGTGGACTTAGACTTGGCACTGATTGCATTTTGAGGCTCACTTTTCTACTTTAATGTTTTGCAGACAGAAGGGAAAAATCTCTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGTTCTAACGTGAGAATTGCCTAGTTTCTTGTTCATTCCAAGCTGATTTATGTCTTTAATATCCATGCCATACATCTGATATGTTAAACTTGTTGACTAACGATAACCACTCTACTCTGCAGCTGGAAATGATATCCCTTGATGATGCAGCAAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATGAGAAGTAAGTAATATAAAATGAATTACCAATTTGTTTGTTTTCGTTAACAAAAGAGTCAGCGACGAATCTTTTCACTTACAGTCCCATCTGGCCTTGCAGCAAAAGTTAGGCGCCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTTATTGAGAAGGTAATATACTCCTTACACTTTTCATTTTATATTTTTTATTTGTTCAAATTTACTAGTAAATAGTAGTGAGAATGAGTTTCACATTTCCTCTTTGCATTGATTTCTTTATTGATTATTGTCACTCTACAAAATGATGCAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATTGAATGAGGCATCACTTTACAATTCAAAACAAAACGATTCTAGGAAAAGGGCGTTTGGAAATGATGTCACAAACATAAGCTTTGCCAGGAATAGAACAGACTTGTTCATGGGTGGTGACTTTAAGAAGCAAAAGACAATGGAAAATGATAGTGGGCTATGTCTGGAAGATGTGAAACAAGGCATAAAACAGACTTCAGCTAACTATCAATTTGGTCCTTTTGCTCCTGCCTTTGTATCCAAAGCTGGAAGCTCTGAGAATAAAGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCTACTGAACATTGCCCTCAGTATCAAAACCAAGGCAATTAA

Protein sequence

>MS.gene60329.t1

MAASSSDPPSRHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTGSQGESLSQPTGSQNDNLNPNSTFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLNEASLYNSKQNDSRKRAFGNDVTNISFARNRTDLFMGGDFKKQKTMENDSGLCLEDVKQGIKQTSANYQFGPFAPAFVSKAGSSENKVKQVHDWESLATEHCPQYQNQGN