Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60465.t1 | XP_003625028.1 | 96.2 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 1.20E-145 | 525.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60465.t1 | Q55EX9 | 31.0 | 261 | 158 | 7 | 5 | 257 | 15 | 261 | 3.2e-27 | 123.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60465.t1 | A2Q2Z0 | 96.2 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 8.3e-146 | 525.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene60465 | 0.804297 | 2.31E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene60465 | 0.804075 | 2.57E-49 | -1.69E-46 |
| MS.gene055724 | MS.gene60465 | 0.809477 | 1.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60465.t1 | MTR_7g090180 | 96.169 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 0.0 | 524 |
| MS.gene60465.t1 | MTR_7g090190 | 87.739 | 261 | 18 | 1 | 1 | 261 | 54 | 300 | 1.87e-167 | 468 |
| MS.gene60465.t1 | MTR_7g091520 | 72.031 | 261 | 73 | 0 | 1 | 261 | 1 | 261 | 7.21e-144 | 404 |
| MS.gene60465.t1 | MTR_7g091510 | 65.918 | 267 | 64 | 2 | 1 | 258 | 1 | 249 | 7.98e-127 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60465.t1 | AT2G41380 | 57.358 | 265 | 107 | 2 | 1 | 259 | 1 | 265 | 1.60e-109 | 317 |
| MS.gene60465.t1 | AT5G10830 | 42.739 | 241 | 136 | 2 | 1 | 240 | 1 | 240 | 4.71e-64 | 201 |
| MS.gene60465.t1 | AT4G22530 | 37.643 | 263 | 159 | 4 | 1 | 261 | 1 | 260 | 1.44e-58 | 187 |
| MS.gene60465.t1 | AT4G22530 | 37.643 | 263 | 159 | 4 | 1 | 261 | 1 | 260 | 1.44e-58 | 187 |
| MS.gene60465.t1 | AT3G61210 | 38.589 | 241 | 147 | 1 | 1 | 241 | 4 | 243 | 1.22e-56 | 182 |
| MS.gene60465.t1 | AT3G54150 | 37.066 | 259 | 161 | 2 | 1 | 258 | 1 | 258 | 3.77e-56 | 181 |
| MS.gene60465.t1 | AT3G54150 | 36.680 | 259 | 162 | 2 | 1 | 258 | 1 | 258 | 2.21e-55 | 181 |
| MS.gene60465.t1 | AT1G55450 | 38.017 | 242 | 147 | 2 | 1 | 241 | 1 | 240 | 9.47e-51 | 169 |
| MS.gene60465.t1 | AT1G55450 | 36.653 | 251 | 147 | 3 | 1 | 241 | 1 | 249 | 7.96e-48 | 161 |
Find 63 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTTGTTCATAGAAATT+TGG | 0.137606 | 3.2:+19904628 | None:intergenic |
| CTGGGATTCGGCGCGTAAAT+TGG | 0.205689 | 3.2:-19904488 | MS.gene60465:CDS |
| TCTCAGATAAACTGGAAATT+TGG | 0.212109 | 3.2:+19904234 | None:intergenic |
| CTGCCTCTCACAACCTTGTT+TGG | 0.240167 | 3.2:-19905936 | MS.gene60465:CDS |
| GTGTGTTTGTATTGCACATT+AGG | 0.280009 | 3.2:+19904751 | None:intergenic |
| ATACTGATTCGCAACCTTAC+TGG | 0.292069 | 3.2:-19904507 | MS.gene60465:CDS |
| TGACTTGTTCATAGAAATTT+GGG | 0.304263 | 3.2:+19904629 | None:intergenic |
| TCTACTTCATCACTAATTCT+TGG | 0.306205 | 3.2:+19904553 | None:intergenic |
| AGAAAGGTGTGGAGCTTCTT+GGG | 0.314357 | 3.2:-19904312 | MS.gene60465:CDS |
| CTTCCAATTCTCAGATAAAC+TGG | 0.314828 | 3.2:+19904226 | None:intergenic |
| TTTCCAGTTTATCTGAGAAT+TGG | 0.331830 | 3.2:-19904229 | MS.gene60465:CDS |
| CCATTGCTCAAGGCCTTCAT+TGG | 0.361075 | 3.2:-19904660 | MS.gene60465:CDS |
| AGGGAGCGAACTTACAGATT+TGG | 0.374229 | 3.2:+19905885 | None:intergenic |
| TGCCTCTCACAACCTTGTTT+GGG | 0.378336 | 3.2:-19905935 | MS.gene60465:CDS |
| GAGAAAGGTGTGGAGCTTCT+TGG | 0.390573 | 3.2:-19904313 | MS.gene60465:CDS |
| AGCAATGGTCACAAGGTCTA+TGG | 0.404104 | 3.2:+19904675 | None:intergenic |
| ATTTCTATGAACAAGTCAAA+TGG | 0.408253 | 3.2:-19904624 | MS.gene60465:CDS |
| ACTCCATCCACTGCCTCAAA+TGG | 0.430186 | 3.2:+19904436 | None:intergenic |
| TTTGGCGGCTTGGCCACTTC+CGG | 0.434668 | 3.2:+19905903 | None:intergenic |
| TGTTAACTTATATAAAATCA+TGG | 0.435646 | 3.2:-19904357 | MS.gene60465:CDS |
| TACTGATTCGCAACCTTACT+GGG | 0.442332 | 3.2:-19904506 | MS.gene60465:CDS |
| AACTTACAGATTTGGCGGCT+TGG | 0.455330 | 3.2:+19905893 | None:intergenic |
| GTATTGCACATTAGGGAGCT+TGG | 0.459446 | 3.2:+19904759 | None:intergenic |
| TGTGTTTGTATTGCACATTA+GGG | 0.471335 | 3.2:+19904752 | None:intergenic |
| TTTAAGCTTGCTTGGGGTGA+AGG | 0.474915 | 3.2:-19904271 | MS.gene60465:CDS |
| TTTCTATGAACAAGTCAAAT+GGG | 0.481205 | 3.2:-19904623 | MS.gene60465:CDS |
| TTCGCAACCTTACTGGGATT+CGG | 0.482307 | 3.2:-19904500 | MS.gene60465:CDS |
| GTTTCTGTCACAAACTCAAA+TGG | 0.482656 | 3.2:+19904400 | None:intergenic |
| AAGAGTTGTGGTGGATAACT+TGG | 0.490769 | 3.2:+19905979 | None:intergenic |
| TGGGATGTTGCTACCGGAAG+TGG | 0.494992 | 3.2:-19905916 | MS.gene60465:CDS |
| GTTACAATTTGTTCAACCTC+GGG | 0.499141 | 3.2:+19904709 | None:intergenic |
| AATTTGTTCAACCTCGGGAA+TGG | 0.501401 | 3.2:+19904714 | None:intergenic |
| GAGCGAACTTACAGATTTGG+CGG | 0.506617 | 3.2:+19905888 | None:intergenic |
| TTTCCATTTGAGGCAGTGGA+TGG | 0.511590 | 3.2:-19904439 | MS.gene60465:CDS |
| TTACGCGCCGAATCCCAGTA+AGG | 0.516922 | 3.2:+19904493 | None:intergenic |
| TATCAAACAGCAAAAGAGAA+AGG | 0.526553 | 3.2:-19904328 | MS.gene60465:CDS |
| CTCATGGAGTCATTGCTGCT+TGG | 0.538560 | 3.2:-19904588 | MS.gene60465:CDS |
| CTTGTTTGGGATGTTGCTAC+CGG | 0.539070 | 3.2:-19905922 | MS.gene60465:CDS |
| TTGGGAGGTCAAACCAATGA+AGG | 0.542079 | 3.2:+19904647 | None:intergenic |
| TATCTGAGAATTGGAAGAGT+GGG | 0.543043 | 3.2:-19904220 | MS.gene60465:CDS |
| TGTTACAATTTGTTCAACCT+CGG | 0.554611 | 3.2:+19904708 | None:intergenic |
| TCGGGAATGGACATTGTTGA+GGG | 0.555106 | 3.2:+19904727 | None:intergenic |
| TGGGTACTCAAGAAACCTCA+TGG | 0.560111 | 3.2:-19904604 | MS.gene60465:CDS |
| GTGGATGGAGTTGATCATAC+AGG | 0.561820 | 3.2:-19904424 | MS.gene60465:CDS |
| CTCGGGAATGGACATTGTTG+AGG | 0.563917 | 3.2:+19904726 | None:intergenic |
| AAGCTTGCTTGGGGTGAAGG+TGG | 0.569154 | 3.2:-19904268 | MS.gene60465:CDS |
| GGCCTTGAGCAATGGTCACA+AGG | 0.570523 | 3.2:+19904668 | None:intergenic |
| CGGTAGCAACATCCCAAACA+AGG | 0.582449 | 3.2:+19905923 | None:intergenic |
| CCAATGAAGGCCTTGAGCAA+TGG | 0.589997 | 3.2:+19904660 | None:intergenic |
| GAAAGGTGTGGAGCTTCTTG+GGG | 0.593637 | 3.2:-19904311 | MS.gene60465:CDS |
| GAAAGGAATACGCAGATGCA+AGG | 0.594821 | 3.2:-19906002 | MS.gene60465:CDS |
| TTGTTGTTCACTCACATCTG+TGG | 0.607763 | 3.2:+19904795 | None:intergenic |
| ATCCCAAACAAGGTTGTGAG+AGG | 0.614756 | 3.2:+19905933 | None:intergenic |
| GACCTTGTGACCATTGCTCA+AGG | 0.615868 | 3.2:-19904670 | MS.gene60465:CDS |
| CTCAACAATGTCCATTCCCG+AGG | 0.622494 | 3.2:-19904725 | MS.gene60465:CDS |
| ATGAATTGAAAGAGTTGTGG+TGG | 0.623238 | 3.2:+19905970 | None:intergenic |
| ACAAGGTCTATGGTTCCTTG+TGG | 0.630664 | 3.2:+19904685 | None:intergenic |
| CTTGTTCATAGAAATTTGGG+AGG | 0.638256 | 3.2:+19904632 | None:intergenic |
| TTATCTGAGAATTGGAAGAG+TGG | 0.649005 | 3.2:-19904221 | MS.gene60465:CDS |
| GCTATGAATTGAAAGAGTTG+TGG | 0.650825 | 3.2:+19905967 | None:intergenic |
| AACAGCAAAAGAGAAAGGTG+TGG | 0.664799 | 3.2:-19904323 | MS.gene60465:CDS |
| GAACAAATTGTAACACCACA+AGG | 0.678263 | 3.2:-19904700 | MS.gene60465:CDS |
| CAAGCAGCAATGACTCCATG+AGG | 0.711431 | 3.2:+19904589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTAACTTATATAAAATCA+TGG | - | chr3.2:19905880-19905899 | MS.gene60465:intron | 15.0% |
| !!! | CATTCAAGTTATATTTTATA+CGG | - | chr3.2:19904701-19904720 | MS.gene60465:CDS | 15.0% |
| !! | AATATTCTTACCTTATAAGT+CGG | + | chr3.2:19905009-19905028 | None:intergenic | 20.0% |
| !! | CTATAAGATATTGTAAGATA+AGG | + | chr3.2:19904398-19904417 | None:intergenic | 20.0% |
| !! | CTTATCTTACAATATCTTAT+AGG | - | chr3.2:19904396-19904415 | MS.gene60465:CDS | 20.0% |
| !! | TAGACTTTAATATTGTGTTA+TGG | - | chr3.2:19904973-19904992 | MS.gene60465:intron | 20.0% |
| !! | TTATTTAGACATACAAAAGT+CGG | + | chr3.2:19904742-19904761 | None:intergenic | 20.0% |
| !!! | GTTAGAGTAAAAGTAATTTT+GGG | + | chr3.2:19905373-19905392 | None:intergenic | 20.0% |
| !!! | TCTAAATAACATGTCTTTTA+TGG | - | chr3.2:19904753-19904772 | MS.gene60465:CDS | 20.0% |
| !!! | TGTTAGAGTAAAAGTAATTT+TGG | + | chr3.2:19905374-19905393 | None:intergenic | 20.0% |
| ! | AAAAAATTAAGTTCCACGTT+AGG | + | chr3.2:19904881-19904900 | None:intergenic | 25.0% |
| ! | AAAAATTAAGTTCCACGTTA+GGG | + | chr3.2:19904880-19904899 | None:intergenic | 25.0% |
| ! | ATTTCTATGAACAAGTCAAA+TGG | - | chr3.2:19905613-19905632 | MS.gene60465:intron | 25.0% |
| ! | TTTCTATGAACAAGTCAAAT+GGG | - | chr3.2:19905614-19905633 | MS.gene60465:intron | 25.0% |
| !! | CTCTTTTATCAGATAAAATG+TGG | - | chr3.2:19905206-19905225 | MS.gene60465:intron | 25.0% |
| !! | GATTTTGTCATGTACTATTT+AGG | + | chr3.2:19904501-19904520 | None:intergenic | 25.0% |
| !! | TGAAAAATTTAAGCTTGCTT+GGG | - | chr3.2:19905959-19905978 | MS.gene60465:CDS | 25.0% |
| !! | TTGAAAAATTTAAGCTTGCT+TGG | - | chr3.2:19905958-19905977 | MS.gene60465:CDS | 25.0% |
| !! | TTTCATAAAACCGACTTATA+AGG | - | chr3.2:19904996-19905015 | MS.gene60465:intron | 25.0% |
| !!! | GAGTCATATTTAATTTGGAT+TGG | + | chr3.2:19904557-19904576 | None:intergenic | 25.0% |
| !!! | TGACTTGTTCATAGAAATTT+GGG | + | chr3.2:19905611-19905630 | None:intergenic | 25.0% |
| !!! | TTGACTTGTTCATAGAAATT+TGG | + | chr3.2:19905612-19905631 | None:intergenic | 25.0% |
| AGAATTGTATTATGTGTGTG+TGG | + | chr3.2:19905342-19905361 | None:intergenic | 30.0% | |
| CATCCTTGTAACTCTAATAA+TGG | + | chr3.2:19904582-19904601 | None:intergenic | 30.0% | |
| CCTATATCCAACAAAATTCA+AGG | + | chr3.2:19905071-19905090 | None:intergenic | 30.0% | |
| GAATGTGTGTAATATTAGAC+AGG | + | chr3.2:19904686-19904705 | None:intergenic | 30.0% | |
| TATCAAACAGCAAAAGAGAA+AGG | - | chr3.2:19905909-19905928 | MS.gene60465:CDS | 30.0% | |
| TCTAACATATGTGGTTTAGA+TGG | - | chr3.2:19904819-19904838 | MS.gene60465:CDS | 30.0% | |
| TCTACTTCATCACTAATTCT+TGG | + | chr3.2:19905687-19905706 | None:intergenic | 30.0% | |
| TCTCAGATAAACTGGAAATT+TGG | + | chr3.2:19906006-19906025 | None:intergenic | 30.0% | |
| TGGAGGAGTCATATTTAATT+TGG | + | chr3.2:19904562-19904581 | None:intergenic | 30.0% | |
| TGTGTTTGTATTGCACATTA+GGG | + | chr3.2:19905488-19905507 | None:intergenic | 30.0% | |
| TTTCCAGTTTATCTGAGAAT+TGG | - | chr3.2:19906008-19906027 | MS.gene60465:CDS | 30.0% | |
| ! | AAGTAAGCCTTGAATTTTGT+TGG | - | chr3.2:19905061-19905080 | MS.gene60465:intron | 30.0% |
| ! | CCTTGAATTTTGTTGGATAT+AGG | - | chr3.2:19905068-19905087 | MS.gene60465:intron | 30.0% |
| ! | GAAAAATTTAAGCTTGCTTG+GGG | - | chr3.2:19905960-19905979 | MS.gene60465:CDS | 30.0% |
| ! | TGTTACAATTTGTTCAACCT+CGG | + | chr3.2:19905532-19905551 | None:intergenic | 30.0% |
| !! | GAAACATTGATGAGTTTTGA+TGG | - | chr3.2:19905855-19905874 | MS.gene60465:intron | 30.0% |
| !! | GGACTGATTTTCAAAATTGT+AGG | + | chr3.2:19905233-19905252 | None:intergenic | 30.0% |
| !!! | AAGCATTGATTTTCCATTTG+AGG | - | chr3.2:19905788-19905807 | MS.gene60465:intron | 30.0% |
| AAAATCAGTCCCACATAAAG+TGG | - | chr3.2:19905242-19905261 | MS.gene60465:intron | 35.0% | |
| ATGAATTGAAAGAGTTGTGG+TGG | + | chr3.2:19904270-19904289 | None:intergenic | 35.0% | |
| ATTCAAGGCTTACTTAGTTC+AGG | + | chr3.2:19905056-19905075 | None:intergenic | 35.0% | |
| CATATGTGGTTTAGATGGTT+AGG | - | chr3.2:19904824-19904843 | MS.gene60465:CDS | 35.0% | |
| CCTCCATTATTAGAGTTACA+AGG | - | chr3.2:19904576-19904595 | MS.gene60465:CDS | 35.0% | |
| CCTTGTAACTCTAATAATGG+AGG | + | chr3.2:19904579-19904598 | None:intergenic | 35.0% | |
| CTAAACCACATATGTTAGAG+AGG | + | chr3.2:19904818-19904837 | None:intergenic | 35.0% | |
| CTAGCATGCAAATGCAAATT+CGG | + | chr3.2:19905109-19905128 | None:intergenic | 35.0% | |
| CTTCCAATTCTCAGATAAAC+TGG | + | chr3.2:19906014-19906033 | None:intergenic | 35.0% | |
| CTTGTTCATAGAAATTTGGG+AGG | + | chr3.2:19905608-19905627 | None:intergenic | 35.0% | |
| GAACAAATTGTAACACCACA+AGG | - | chr3.2:19905537-19905556 | MS.gene60465:intron | 35.0% | |
| GCTATGAATTGAAAGAGTTG+TGG | + | chr3.2:19904273-19904292 | None:intergenic | 35.0% | |
| GCTTCTTCTTAGTTAGTGTA+AGG | - | chr3.2:19905132-19905151 | MS.gene60465:intron | 35.0% | |
| GTGTGTTTGTATTGCACATT+AGG | + | chr3.2:19905489-19905508 | None:intergenic | 35.0% | |
| GTTCAGTACTTACTTTACGA+GGG | + | chr3.2:19904456-19904475 | None:intergenic | 35.0% | |
| GTTTCTGTCACAAACTCAAA+TGG | + | chr3.2:19905840-19905859 | None:intergenic | 35.0% | |
| TATCTGAGAATTGGAAGAGT+GGG | - | chr3.2:19906017-19906036 | MS.gene60465:CDS | 35.0% | |
| TTATCTGAGAATTGGAAGAG+TGG | - | chr3.2:19906016-19906035 | MS.gene60465:CDS | 35.0% | |
| TTCAAGGCTTACTTAGTTCA+GGG | + | chr3.2:19905055-19905074 | None:intergenic | 35.0% | |
| TTTCTCCTCTCTAACATATG+TGG | - | chr3.2:19904810-19904829 | MS.gene60465:CDS | 35.0% | |
| ! | ACTTTTTGTGAATCAGGGAA+AGG | - | chr3.2:19904218-19904237 | MS.gene60465:CDS | 35.0% |
| ! | CATATGTTGTTGGTTGATGT+TGG | + | chr3.2:19904623-19904642 | None:intergenic | 35.0% |
| ! | GCAGAACTTTTTGTGAATCA+GGG | - | chr3.2:19904213-19904232 | MS.gene60465:CDS | 35.0% |
| ! | GTTACAATTTGTTCAACCTC+GGG | + | chr3.2:19905531-19905550 | None:intergenic | 35.0% |
| !! | CTCGTAAAGTAAGTACTGAA+CGG | - | chr3.2:19904455-19904474 | MS.gene60465:CDS | 35.0% |
| !! | GCAATGCTTTGAAACATAGA+TGG | - | chr3.2:19904521-19904540 | MS.gene60465:CDS | 35.0% |
| AACAGCAAAAGAGAAAGGTG+TGG | - | chr3.2:19905914-19905933 | MS.gene60465:CDS | 40.0% | |
| AAGGAAGAGATAAAGTGCGA+GGG | + | chr3.2:19904379-19904398 | None:intergenic | 40.0% | |
| ACAGTGTGCACATATGTTGT+TGG | + | chr3.2:19904633-19904652 | None:intergenic | 40.0% | |
| CGTAATAGTACGAGACGTAA+GGG | + | chr3.2:19904914-19904933 | None:intergenic | 40.0% | |
| CGTTCAGTACTTACTTTACG+AGG | + | chr3.2:19904457-19904476 | None:intergenic | 40.0% | |
| CGTTCATCGGTGAAATCATA+CGG | + | chr3.2:19905274-19905293 | None:intergenic | 40.0% | |
| CTTGGTACGCTAATATAGAC+TGG | - | chr3.2:19904934-19904953 | MS.gene60465:intron | 40.0% | |
| GAGTTACAAGGATGTTTCTC+TGG | - | chr3.2:19904588-19904607 | MS.gene60465:CDS | 40.0% | |
| GGAGAATTGAGCTAGTTGTT+TGG | - | chr3.2:19904845-19904864 | MS.gene60465:intron | 40.0% | |
| GTAATAGTACGAGACGTAAG+GGG | + | chr3.2:19904913-19904932 | None:intergenic | 40.0% | |
| GTTCATCGGTGAAATCATAC+GGG | + | chr3.2:19905273-19905292 | None:intergenic | 40.0% | |
| TAAGGAAGAGATAAAGTGCG+AGG | + | chr3.2:19904380-19904399 | None:intergenic | 40.0% | |
| TAATAGTACGAGACGTAAGG+GGG | + | chr3.2:19904912-19904931 | None:intergenic | 40.0% | |
| ! | AATTTGTTCAACCTCGGGAA+TGG | + | chr3.2:19905526-19905545 | None:intergenic | 40.0% |
| ! | CTGGAAATTTGGCAGTTTTG+TGG | + | chr3.2:19905995-19906014 | None:intergenic | 40.0% |
| ! | GGCAGAACTTTTTGTGAATC+AGG | - | chr3.2:19904212-19904231 | MS.gene60465:CDS | 40.0% |
| ! | TTGTTGTTCACTCACATCTG+TGG | + | chr3.2:19905445-19905464 | None:intergenic | 40.0% |
| !! | AAGAGTTGTGGTGGATAACT+TGG | + | chr3.2:19904261-19904280 | None:intergenic | 40.0% |
| !! | ATACTGATTCGCAACCTTAC+TGG | - | chr3.2:19905730-19905749 | MS.gene60465:intron | 40.0% |
| !! | TACTGATTCGCAACCTTACT+GGG | - | chr3.2:19905731-19905750 | MS.gene60465:intron | 40.0% |
| !! | TGATTTTCCATTTGAGGCAG+TGG | - | chr3.2:19905794-19905813 | MS.gene60465:intron | 40.0% |
| !! | TGCAAATGCAAATTCGGTGT+CGG | + | chr3.2:19905103-19905122 | None:intergenic | 40.0% |
| !!! | TGGTTTTATAAGCCCTAACG+TGG | - | chr3.2:19904865-19904884 | MS.gene60465:intron | 40.0% |
| AACTTACAGATTTGGCGGCT+TGG | + | chr3.2:19904347-19904366 | None:intergenic | 45.0% | |
| AAGAGATAAAGTGCGAGGGA+AGG | + | chr3.2:19904375-19904394 | None:intergenic | 45.0% | |
| ACAAGGTCTATGGTTCCTTG+TGG | + | chr3.2:19905555-19905574 | None:intergenic | 45.0% | |
| ACGTCTCGTACTATTACGCT+TGG | - | chr3.2:19904916-19904935 | MS.gene60465:intron | 45.0% | |
| ACTCTTTCTCCTGCGTTCAT+CGG | + | chr3.2:19905287-19905306 | None:intergenic | 45.0% | |
| AGAGATAAAGTGCGAGGGAA+GGG | + | chr3.2:19904374-19904393 | None:intergenic | 45.0% | |
| AGCAATGGTCACAAGGTCTA+TGG | + | chr3.2:19905565-19905584 | None:intergenic | 45.0% | |
| AGGGAGCGAACTTACAGATT+TGG | + | chr3.2:19904355-19904374 | None:intergenic | 45.0% | |
| ATCAGTCCCACATAAAGTGG+TGG | - | chr3.2:19905245-19905264 | MS.gene60465:intron | 45.0% | |
| ATCCCAAACAAGGTTGTGAG+AGG | + | chr3.2:19904307-19904326 | None:intergenic | 45.0% | |
| ATGATTTCACCGATGAACGC+AGG | - | chr3.2:19905275-19905294 | MS.gene60465:intron | 45.0% | |
| CAGTACTTACTTTACGAGGG+AGG | + | chr3.2:19904453-19904472 | None:intergenic | 45.0% | |
| GAAAGGAATACGCAGATGCA+AGG | - | chr3.2:19904235-19904254 | MS.gene60465:CDS | 45.0% | |
| GAGCGAACTTACAGATTTGG+CGG | + | chr3.2:19904352-19904371 | None:intergenic | 45.0% | |
| GCGTAATAGTACGAGACGTA+AGG | + | chr3.2:19904915-19904934 | None:intergenic | 45.0% | |
| GCTTACTTAGTTCAGGGAGA+AGG | + | chr3.2:19905049-19905068 | None:intergenic | 45.0% | |
| GTATTGCACATTAGGGAGCT+TGG | + | chr3.2:19905481-19905500 | None:intergenic | 45.0% | |
| TCGGGAATGGACATTGTTGA+GGG | + | chr3.2:19905513-19905532 | None:intergenic | 45.0% | |
| TGGGTACTCAAGAAACCTCA+TGG | - | chr3.2:19905633-19905652 | MS.gene60465:intron | 45.0% | |
| TTCGCAACCTTACTGGGATT+CGG | - | chr3.2:19905737-19905756 | MS.gene60465:intron | 45.0% | |
| TTGGGAGGTCAAACCAATGA+AGG | + | chr3.2:19905593-19905612 | None:intergenic | 45.0% | |
| ! | AGAAAGGTGTGGAGCTTCTT+GGG | - | chr3.2:19905925-19905944 | MS.gene60465:CDS | 45.0% |
| ! | CTTGTTTGGGATGTTGCTAC+CGG | - | chr3.2:19904315-19904334 | MS.gene60465:CDS | 45.0% |
| ! | GTGGATGGAGTTGATCATAC+AGG | - | chr3.2:19905813-19905832 | MS.gene60465:intron | 45.0% |
| ! | TGCCTCTCACAACCTTGTTT+GGG | - | chr3.2:19904302-19904321 | MS.gene60465:CDS | 45.0% |
| ! | TTTAAGCTTGCTTGGGGTGA+AGG | - | chr3.2:19905966-19905985 | MS.gene60465:CDS | 45.0% |
| ! | TTTCCATTTGAGGCAGTGGA+TGG | - | chr3.2:19905798-19905817 | MS.gene60465:intron | 45.0% |
| ACGGGTTCCACCACTTTATG+TGG | + | chr3.2:19905255-19905274 | None:intergenic | 50.0% | |
| ACTCCATCCACTGCCTCAAA+TGG | + | chr3.2:19905804-19905823 | None:intergenic | 50.0% | |
| CAAGCAGCAATGACTCCATG+AGG | + | chr3.2:19905651-19905670 | None:intergenic | 50.0% | |
| CCAATGAAGGCCTTGAGCAA+TGG | + | chr3.2:19905580-19905599 | None:intergenic | 50.0% | |
| CCATTGCTCAAGGCCTTCAT+TGG | - | chr3.2:19905577-19905596 | MS.gene60465:intron | 50.0% | |
| CGGGTTCCACCACTTTATGT+GGG | + | chr3.2:19905254-19905273 | None:intergenic | 50.0% | |
| CGGTAGCAACATCCCAAACA+AGG | + | chr3.2:19904317-19904336 | None:intergenic | 50.0% | |
| CTCAACAATGTCCATTCCCG+AGG | - | chr3.2:19905512-19905531 | MS.gene60465:intron | 50.0% | |
| CTCATGGAGTCATTGCTGCT+TGG | - | chr3.2:19905649-19905668 | MS.gene60465:intron | 50.0% | |
| CTCGGGAATGGACATTGTTG+AGG | + | chr3.2:19905514-19905533 | None:intergenic | 50.0% | |
| CTGCCTCTCACAACCTTGTT+TGG | - | chr3.2:19904301-19904320 | MS.gene60465:CDS | 50.0% | |
| GACCTTGTGACCATTGCTCA+AGG | - | chr3.2:19905567-19905586 | MS.gene60465:intron | 50.0% | |
| ! | GAAAGGTGTGGAGCTTCTTG+GGG | - | chr3.2:19905926-19905945 | MS.gene60465:CDS | 50.0% |
| ! | GAGAAAGGTGTGGAGCTTCT+TGG | - | chr3.2:19905924-19905943 | MS.gene60465:CDS | 50.0% |
| CTGGGATTCGGCGCGTAAAT+TGG | - | chr3.2:19905749-19905768 | MS.gene60465:intron | 55.0% | |
| GGCCTTGAGCAATGGTCACA+AGG | + | chr3.2:19905572-19905591 | None:intergenic | 55.0% | |
| TGGGATGTTGCTACCGGAAG+TGG | - | chr3.2:19904321-19904340 | MS.gene60465:CDS | 55.0% | |
| TTACGCGCCGAATCCCAGTA+AGG | + | chr3.2:19905747-19905766 | None:intergenic | 55.0% | |
| ! | AAGCTTGCTTGGGGTGAAGG+TGG | - | chr3.2:19905969-19905988 | MS.gene60465:CDS | 55.0% |
| ! | TTTGGCGGCTTGGCCACTTC+CGG | + | chr3.2:19904337-19904356 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 19904210 | 19906049 | 19904210 | ID=MS.gene60465 |
| chr3.2 | mRNA | 19904210 | 19906049 | 19904210 | ID=MS.gene60465.t1;Parent=MS.gene60465 |
| chr3.2 | exon | 19905900 | 19906049 | 19905900 | ID=MS.gene60465.t1.exon1;Parent=MS.gene60465.t1 |
| chr3.2 | CDS | 19905900 | 19906049 | 19905900 | ID=cds.MS.gene60465.t1;Parent=MS.gene60465.t1 |
| chr3.2 | exon | 19904210 | 19904845 | 19904210 | ID=MS.gene60465.t1.exon2;Parent=MS.gene60465.t1 |
| chr3.2 | CDS | 19904210 | 19904845 | 19904210 | ID=cds.MS.gene60465.t1;Parent=MS.gene60465.t1 |
| Gene Sequence |
| Protein sequence |
