Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60510.t1 | XP_024628666.1 | 89.3 | 234 | 24 | 1 | 66 | 299 | 71 | 303 | 5.30E-116 | 427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60510.t1 | A0A396J752 | 62.5 | 355 | 125 | 7 | 66 | 419 | 134 | 481 | 9.7e-112 | 413.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049404 | MS.gene60510 | 0.810705 | 1.01E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene60510 | 0.804367 | 2.24E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene60510 | 0.803989 | 2.68E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene60510 | 0.826279 | 2.96E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene60510 | 0.831887 | 1.29E-55 | -1.69E-46 |
| MS.gene050026 | MS.gene60510 | 0.812151 | 4.90E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene60510 | 0.804167 | 2.46E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene60510 | 0.82364 | 1.24E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene60510 | 0.824643 | 7.22E-54 | -1.69E-46 |
| MS.gene052586 | MS.gene60510 | 0.814701 | 1.35E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene60510 | 0.812476 | 4.16E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene60510 | 0.802225 | 6.21E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene60510 | 0.827357 | 1.64E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene60510 | 0.800367 | 1.49E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60510.t1 | MTR_5g048720 | 87.218 | 133 | 15 | 1 | 265 | 397 | 19 | 149 | 2.26e-76 | 236 |
| MS.gene60510.t1 | MTR_8g040975 | 90.152 | 132 | 13 | 0 | 266 | 397 | 20 | 151 | 2.40e-73 | 231 |
| MS.gene60510.t1 | MTR_8g057120 | 91.453 | 117 | 10 | 0 | 303 | 419 | 156 | 272 | 7.93e-70 | 222 |
| MS.gene60510.t1 | MTR_4g014530 | 91.209 | 91 | 6 | 1 | 331 | 419 | 1 | 91 | 3.21e-49 | 162 |
| MS.gene60510.t1 | MTR_4g088560 | 81.000 | 100 | 10 | 1 | 298 | 397 | 11 | 101 | 6.39e-36 | 129 |
| MS.gene60510.t1 | MTR_0232s0030 | 57.647 | 85 | 32 | 2 | 51 | 135 | 122 | 202 | 7.28e-25 | 101 |
| MS.gene60510.t1 | MTR_0464s0010 | 76.786 | 56 | 13 | 0 | 245 | 300 | 6 | 61 | 1.44e-21 | 89.7 |
| MS.gene60510.t1 | MTR_4g013040 | 65.957 | 47 | 15 | 1 | 300 | 346 | 155 | 200 | 5.64e-12 | 65.1 |
| MS.gene60510.t1 | MTR_5g061300 | 23.431 | 239 | 141 | 5 | 105 | 340 | 70 | 269 | 4.13e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60510.t1 | AT1G40087 | 25.926 | 351 | 241 | 7 | 44 | 382 | 2 | 345 | 1.07e-33 | 130 |
| MS.gene60510.t1 | AT3G30200 | 26.182 | 275 | 190 | 4 | 116 | 382 | 196 | 465 | 5.98e-25 | 107 |
Find 86 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTATTAGCAAATTATT+TGG | 0.134917 | 3.2:+20643404 | MS.gene60510:CDS |
| TGCTTGCATTTGCATTAATA+AGG | 0.210712 | 3.2:-20644710 | None:intergenic |
| TGCTGGATATGTCCGTTCTA+TGG | 0.260226 | 3.2:+20644534 | MS.gene60510:CDS |
| ATTTAAAGATTTCCCGATAA+TGG | 0.263080 | 3.2:+20643443 | MS.gene60510:CDS |
| TCTCTTGTTTCTAAATTTGT+TGG | 0.322215 | 3.2:-20645880 | None:intergenic |
| AGCAAATTATTTGGGCCAAT+TGG | 0.338084 | 3.2:+20643413 | MS.gene60510:CDS |
| GAAGCATTTGCCAATGTGTT+TGG | 0.345306 | 3.2:+20644502 | MS.gene60510:CDS |
| GTCATTATCCTGGTTCCATT+TGG | 0.356509 | 3.2:-20643342 | None:intergenic |
| CTTTAAATTGCCTTGCCAAT+TGG | 0.357012 | 3.2:-20643428 | None:intergenic |
| AAATTATTAGCAAATTATTT+GGG | 0.372951 | 3.2:+20643405 | MS.gene60510:CDS |
| TCCCATCTTTCAACCATTAT+CGG | 0.380780 | 3.2:-20643456 | None:intergenic |
| TGTTTAAGAAACATTACAAA+TGG | 0.399446 | 3.2:+20643712 | MS.gene60510:CDS |
| GCTGGATATGTCCGTTCTAT+GGG | 0.400623 | 3.2:+20644535 | MS.gene60510:CDS |
| AGCCGAGATTGATTCTCTTA+AGG | 0.409612 | 3.2:+20644648 | MS.gene60510:CDS |
| CATCCTTCCATTTCTTTCCA+AGG | 0.410334 | 3.2:-20643677 | None:intergenic |
| ACATCAACCTCCCAGTATCT+TGG | 0.412857 | 3.2:-20643155 | None:intergenic |
| TCTCTAGCCTTGGAAAGAAA+TGG | 0.416906 | 3.2:+20643670 | MS.gene60510:CDS |
| AAGTTTGTTGTTGATGATGA+TGG | 0.421434 | 3.2:+20643627 | MS.gene60510:CDS |
| TACTTGTAGGAATTGAGATA+TGG | 0.423884 | 3.2:+20644126 | MS.gene60510:intron |
| AATTATGTTATCTCTAGCCT+TGG | 0.431210 | 3.2:+20643660 | MS.gene60510:CDS |
| TATCTCCCCTGCTATATTCT+CGG | 0.435166 | 3.2:-20644149 | None:intergenic |
| TTCATTGATAAATCTTCCCT+TGG | 0.440878 | 3.2:-20644196 | None:intergenic |
| CCCGATAATGGTTGAAAGAT+GGG | 0.441650 | 3.2:+20643455 | MS.gene60510:CDS |
| TCCCGATAATGGTTGAAAGA+TGG | 0.446335 | 3.2:+20643454 | MS.gene60510:CDS |
| ATGCGGTGGGTCATATTTCA+AGG | 0.456814 | 3.2:+20643283 | MS.gene60510:CDS |
| GCAGATTGCCCCACCGGTTG+AGG | 0.457756 | 3.2:-20643381 | None:intergenic |
| CCCATCTTTCAACCATTATC+GGG | 0.460909 | 3.2:-20643455 | None:intergenic |
| ATGGAATGATGTTCCTCAAC+CGG | 0.463679 | 3.2:+20643368 | MS.gene60510:CDS |
| TATGTCCGTTCTATGGGGCT+TGG | 0.464477 | 3.2:+20644541 | MS.gene60510:CDS |
| GTTTAAGAAACATTACAAAT+GGG | 0.473095 | 3.2:+20643713 | MS.gene60510:CDS |
| TTCAGAAGTTGATGTCTTGA+AGG | 0.473713 | 3.2:+20644678 | MS.gene60510:CDS |
| GAGGTGTCTCGTGTGGGTGG+TGG | 0.476635 | 3.2:-20642959 | None:intergenic |
| CAAATGGGAACTCACATTAG+AGG | 0.477412 | 3.2:+20643728 | MS.gene60510:CDS |
| GAGTCAGTTCCTAGTGTATG+AGG | 0.494286 | 3.2:-20643960 | None:intergenic |
| GATAGTCCGTACCTTGGCTC+TGG | 0.496615 | 3.2:+20643032 | MS.gene60510:CDS |
| AATTTAGCAGATTGCCCCAC+CGG | 0.499755 | 3.2:-20643387 | None:intergenic |
| TGATCTGGGTGAATAAAAGT+TGG | 0.508075 | 3.2:-20643771 | None:intergenic |
| TTGTTATTTGTTAGATGCGG+TGG | 0.512741 | 3.2:+20643269 | MS.gene60510:intron |
| GATTGATTCTCTTAAGGAGA+AGG | 0.517958 | 3.2:+20644654 | MS.gene60510:CDS |
| ACAAAATTCTAGAGACAAAG+AGG | 0.537706 | 3.2:+20644732 | MS.gene60510:CDS |
| GATATGGCCGAGAATATAGC+AGG | 0.537945 | 3.2:+20644142 | MS.gene60510:CDS |
| ATGGAGGTGTCTCGTGTGGG+TGG | 0.542597 | 3.2:-20642962 | None:intergenic |
| GTGCTTGAAGAATCTCCAAA+TGG | 0.542925 | 3.2:+20643327 | MS.gene60510:CDS |
| ATTTGCCAATGTGTTTGGAA+AGG | 0.548585 | 3.2:+20644507 | MS.gene60510:CDS |
| ATTATTTGGGCCAATTGGCA+AGG | 0.549492 | 3.2:+20643418 | MS.gene60510:CDS |
| CTCCTTAAGAGAATCAATCT+CGG | 0.554776 | 3.2:-20644650 | None:intergenic |
| GGCGATGGAGGTGTCTCGTG+TGG | 0.558685 | 3.2:-20642966 | None:intergenic |
| TGCGATCAGAAAAGATGAGT+TGG | 0.567830 | 3.2:+20643986 | MS.gene60510:CDS |
| ATTCCATCGAGTCATTATCC+TGG | 0.568967 | 3.2:-20643352 | None:intergenic |
| TTCAATGATCCTCAAGGCGG+TGG | 0.570763 | 3.2:-20645927 | None:intergenic |
| GCGATGGAGGTGTCTCGTGT+GGG | 0.578755 | 3.2:-20642965 | None:intergenic |
| TAGGAGGAAGGCTGAACAAG+TGG | 0.584537 | 3.2:+20643815 | MS.gene60510:CDS |
| GATTTATCAATGAATATGCA+AGG | 0.585878 | 3.2:+20644205 | MS.gene60510:CDS |
| AAGAATCTCCAAATGGAACC+AGG | 0.590266 | 3.2:+20643334 | MS.gene60510:CDS |
| GAATGATGTTCCTCAACCGG+TGG | 0.591938 | 3.2:+20643371 | MS.gene60510:CDS |
| TCATCTCCAGAGCCAAGGTA+CGG | 0.595150 | 3.2:-20643038 | None:intergenic |
| AATGATGTTCCTCAACCGGT+GGG | 0.604945 | 3.2:+20643372 | MS.gene60510:CDS |
| ACACATGATAGTCCGTACCT+TGG | 0.608571 | 3.2:+20643026 | MS.gene60510:CDS |
| GTGTTTGGAAAGGAACATGC+TGG | 0.608959 | 3.2:+20644517 | MS.gene60510:CDS |
| GAACCAGGATAATGACTCGA+TGG | 0.613463 | 3.2:+20643349 | MS.gene60510:CDS |
| CTTGGAAAGAAATGGAAGGA+TGG | 0.617605 | 3.2:+20643678 | MS.gene60510:CDS |
| TGTTTCGCATAAAGATGCCA+AGG | 0.617713 | 3.2:+20644179 | MS.gene60510:CDS |
| GTCACATGTGTAGGCGATGG+AGG | 0.618381 | 3.2:-20642978 | None:intergenic |
| TAGCCTTGGAAAGAAATGGA+AGG | 0.623697 | 3.2:+20643674 | MS.gene60510:CDS |
| TTATGCCAAGCCCCATAGAA+CGG | 0.625942 | 3.2:-20644546 | None:intergenic |
| TGTGAAGGTGTCACATGTGT+AGG | 0.626985 | 3.2:-20642987 | None:intergenic |
| TGTTATTTGTTAGATGCGGT+GGG | 0.632399 | 3.2:+20643270 | MS.gene60510:intron |
| ATGTTCCTTTCCAAACACAT+TGG | 0.633980 | 3.2:-20644512 | None:intergenic |
| GGTGTCACATGTGTAGGCGA+TGG | 0.637531 | 3.2:-20642981 | None:intergenic |
| ACAAATTTAGAAACAAGAGA+TGG | 0.638643 | 3.2:+20645883 | MS.gene60510:CDS |
| GAGCGACTAGAGATTCGAGA+TGG | 0.640237 | 3.2:-20644571 | None:intergenic |
| CATCATCATCTCCAGAGCCA+AGG | 0.642384 | 3.2:-20643043 | None:intergenic |
| ATTAGCCTCGATGGAAGACG+AGG | 0.645771 | 3.2:-20644605 | None:intergenic |
| TGAGTCTAGCCACCGCCTTG+AGG | 0.645918 | 3.2:+20645918 | MS.gene60510:CDS |
| GTTTCGCATAAAGATGCCAA+GGG | 0.648325 | 3.2:+20644180 | MS.gene60510:CDS |
| ATTTATCAATGAATATGCAA+GGG | 0.649599 | 3.2:+20644206 | MS.gene60510:CDS |
| TGTTGCTTCAATGATCCTCA+AGG | 0.650207 | 3.2:-20645933 | None:intergenic |
| CTGGATATGTCCGTTCTATG+GGG | 0.651362 | 3.2:+20644536 | MS.gene60510:CDS |
| GTTGTCACATGTGTATGTGA+AGG | 0.676465 | 3.2:-20643002 | None:intergenic |
| ATATGGCCGAGAATATAGCA+GGG | 0.687237 | 3.2:+20644143 | MS.gene60510:CDS |
| TTCAAGGAGACATTTAACAG+TGG | 0.703478 | 3.2:+20643299 | MS.gene60510:CDS |
| ATTAGCCTCGTCTTCCATCG+AGG | 0.707505 | 3.2:+20644600 | MS.gene60510:CDS |
| AAAGAAACCAAGATACTGGG+AGG | 0.708954 | 3.2:+20643148 | MS.gene60510:CDS |
| ATGATGTTCCTCAACCGGTG+GGG | 0.710243 | 3.2:+20643373 | MS.gene60510:CDS |
| TATGGCCGAGAATATAGCAG+GGG | 0.712749 | 3.2:+20644144 | MS.gene60510:CDS |
| TGCTTCAATGATCCTCAAGG+CGG | 0.730476 | 3.2:-20645930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTAGCAAATTATTT+GGG | + | chr3.2:20643405-20643424 | MS.gene60510:CDS | 10.0% |
| !! | TAAATTATTAGCAAATTATT+TGG | + | chr3.2:20643404-20643423 | MS.gene60510:CDS | 10.0% |
| !!! | AATTTCAAACATTTCATTTT+AGG | - | chr3.2:20644299-20644318 | None:intergenic | 15.0% |
| !!! | TAGAGATAACATAATTTTTA+TGG | - | chr3.2:20643656-20643675 | None:intergenic | 15.0% |
| !! | AAATTGAAAATTTAGAAGGT+AGG | + | chr3.2:20645145-20645164 | MS.gene60510:intron | 20.0% |
| !! | AATTATTGTCTAATTAATGC+AGG | + | chr3.2:20643893-20643912 | MS.gene60510:intron | 20.0% |
| !! | ATTTATCAATGAATATGCAA+GGG | + | chr3.2:20644206-20644225 | MS.gene60510:CDS | 20.0% |
| !! | GCATAAATTGAAAATTTAGA+AGG | + | chr3.2:20645141-20645160 | MS.gene60510:intron | 20.0% |
| !! | GTTTAAGAAACATTACAAAT+GGG | + | chr3.2:20643713-20643732 | MS.gene60510:CDS | 20.0% |
| !! | TGTTTAAGAAACATTACAAA+TGG | + | chr3.2:20643712-20643731 | MS.gene60510:CDS | 20.0% |
| !!! | CTGTTATTGATTGTTTTAAA+TGG | + | chr3.2:20643236-20643255 | MS.gene60510:intron | 20.0% |
| !!! | TTGGAAATTTACTGTTTTAT+GGG | + | chr3.2:20645308-20645327 | MS.gene60510:intron | 20.0% |
| ! | AAAACAACCAAAAACTTTCA+AGG | - | chr3.2:20645799-20645818 | None:intergenic | 25.0% |
| ! | ACAAATTTAGAAACAAGAGA+TGG | + | chr3.2:20645883-20645902 | MS.gene60510:CDS | 25.0% |
| ! | ATAAAAAGAAACCAAGATAC+TGG | + | chr3.2:20643144-20643163 | MS.gene60510:CDS | 25.0% |
| ! | ATAGACAAAAGTTAGCAAAT+TGG | + | chr3.2:20645545-20645564 | MS.gene60510:intron | 25.0% |
| ! | ATGCATTTGTATTTCCTATT+AGG | - | chr3.2:20645125-20645144 | None:intergenic | 25.0% |
| ! | ATTTAAAGATTTCCCGATAA+TGG | + | chr3.2:20643443-20643462 | MS.gene60510:CDS | 25.0% |
| ! | GATTTATCAATGAATATGCA+AGG | + | chr3.2:20644205-20644224 | MS.gene60510:CDS | 25.0% |
| ! | TAAAAAGAAACCAAGATACT+GGG | + | chr3.2:20643145-20643164 | MS.gene60510:CDS | 25.0% |
| ! | TAGATAATACATGCATATGT+TGG | + | chr3.2:20645729-20645748 | MS.gene60510:intron | 25.0% |
| !! | ATAAGATCCTTGAAAGTTTT+TGG | + | chr3.2:20645789-20645808 | MS.gene60510:intron | 25.0% |
| !! | GTTGGAAATTTACTGTTTTA+TGG | + | chr3.2:20645307-20645326 | MS.gene60510:intron | 25.0% |
| !! | GTTTTATGATAGCAAAGTAA+AGG | + | chr3.2:20643509-20643528 | MS.gene60510:CDS | 25.0% |
| !! | TAACTTTTGTCTATACACAT+AGG | - | chr3.2:20645539-20645558 | None:intergenic | 25.0% |
| !! | TGCAAATTTACTGTTTTATG+TGG | + | chr3.2:20645390-20645409 | MS.gene60510:intron | 25.0% |
| !!! | AAGATGTTTTTGCAATAGTT+TGG | - | chr3.2:20644767-20644786 | None:intergenic | 25.0% |
| !!! | ATGTTGTTATTTGTTAGATG+CGG | + | chr3.2:20643266-20643285 | MS.gene60510:intron | 25.0% |
| !!! | TCTCTTGTTTCTAAATTTGT+TGG | - | chr3.2:20645883-20645902 | None:intergenic | 25.0% |
| AATACAGATGCAGAATATTC+TGG | + | chr3.2:20644914-20644933 | MS.gene60510:intron | 30.0% | |
| AATCTAGTGTTCCTATTTGT+GGG | + | chr3.2:20643189-20643208 | MS.gene60510:intron | 30.0% | |
| AATTATGTTATCTCTAGCCT+TGG | + | chr3.2:20643660-20643679 | MS.gene60510:CDS | 30.0% | |
| ACGCACATTATAAGATTGTT+TGG | + | chr3.2:20644075-20644094 | MS.gene60510:intron | 30.0% | |
| CCTAATGTTCATGAATATCA+GGG | + | chr3.2:20645440-20645459 | MS.gene60510:intron | 30.0% | |
| GATCTTATAAATGCTAGTTG+AGG | - | chr3.2:20645777-20645796 | None:intergenic | 30.0% | |
| GGCATAAAAATCATTAAGAC+AGG | - | chr3.2:20645575-20645594 | None:intergenic | 30.0% | |
| GGTATGAATGTACTATAGTT+TGG | + | chr3.2:20645166-20645185 | MS.gene60510:intron | 30.0% | |
| GTTATACAAAGACAAGTGTA+AGG | - | chr3.2:20644828-20644847 | None:intergenic | 30.0% | |
| TAATCTAGTGTTCCTATTTG+TGG | + | chr3.2:20643188-20643207 | MS.gene60510:intron | 30.0% | |
| TACTTGTAGGAATTGAGATA+TGG | + | chr3.2:20644126-20644145 | MS.gene60510:intron | 30.0% | |
| TATCATATGTGCTTACTTGT+AGG | + | chr3.2:20644113-20644132 | MS.gene60510:intron | 30.0% | |
| TCAGTTCCATATTATCAAAG+AGG | - | chr3.2:20645700-20645719 | None:intergenic | 30.0% | |
| TGCTTGCATTTGCATTAATA+AGG | - | chr3.2:20644713-20644732 | None:intergenic | 30.0% | |
| TTCATTGATAAATCTTCCCT+TGG | - | chr3.2:20644199-20644218 | None:intergenic | 30.0% | |
| ! | ACAAAATTCTAGAGACAAAG+AGG | + | chr3.2:20644732-20644751 | MS.gene60510:CDS | 30.0% |
| ! | ATCTAAGACAATCCAAGTTT+AGG | + | chr3.2:20645667-20645686 | MS.gene60510:intron | 30.0% |
| ! | TGTTTTATGGGTTTGTATTC+TGG | + | chr3.2:20645320-20645339 | MS.gene60510:intron | 30.0% |
| ! | TTTTATTCACCCAGATCATT+GGG | + | chr3.2:20643776-20643795 | MS.gene60510:CDS | 30.0% |
| ! | TTTTTGCACAATTGAAAACG+AGG | + | chr3.2:20644253-20644272 | MS.gene60510:intron | 30.0% |
| !! | AAGTTTGTTGTTGATGATGA+TGG | + | chr3.2:20643627-20643646 | MS.gene60510:CDS | 30.0% |
| !! | TTGTATTCTGGCTGTTTTAT+GGG | + | chr3.2:20645365-20645384 | MS.gene60510:intron | 30.0% |
| !! | TTGTTTCTAAATTTGTTGGC+TGG | - | chr3.2:20645879-20645898 | None:intergenic | 30.0% |
| !! | TTTGTATTCTGGCTGTTTTA+TGG | + | chr3.2:20645364-20645383 | MS.gene60510:intron | 30.0% |
| !! | TTTTGTCAATTTTAGGAGGA+AGG | + | chr3.2:20643803-20643822 | MS.gene60510:CDS | 30.0% |
| !!! | CTGTTTTTGTCAATTTTAGG+AGG | + | chr3.2:20643799-20643818 | MS.gene60510:CDS | 30.0% |
| !!! | GGAATTTTTTGTATTCAACC+AGG | - | chr3.2:20645476-20645495 | None:intergenic | 30.0% |
| AGCAAATTATTTGGGCCAAT+TGG | + | chr3.2:20643413-20643432 | MS.gene60510:CDS | 35.0% | |
| ATCTAGTGTTCCTATTTGTG+GGG | + | chr3.2:20643190-20643209 | MS.gene60510:intron | 35.0% | |
| ATGTTCCTTTCCAAACACAT+TGG | - | chr3.2:20644515-20644534 | None:intergenic | 35.0% | |
| ATTCCTTATTGCCATAACGT+TGG | + | chr3.2:20645491-20645510 | MS.gene60510:intron | 35.0% | |
| ATTTGCCAATGTGTTTGGAA+AGG | + | chr3.2:20644507-20644526 | MS.gene60510:CDS | 35.0% | |
| CAAAAAACTCCTCATACACT+AGG | + | chr3.2:20643951-20643970 | MS.gene60510:CDS | 35.0% | |
| CACTGTATTATTGCCTAAAG+AGG | + | chr3.2:20644321-20644340 | MS.gene60510:intron | 35.0% | |
| CCCTGATATTCATGAACATT+AGG | - | chr3.2:20645443-20645462 | None:intergenic | 35.0% | |
| CTCCTTAAGAGAATCAATCT+CGG | - | chr3.2:20644653-20644672 | None:intergenic | 35.0% | |
| CTTTAAATTGCCTTGCCAAT+TGG | - | chr3.2:20643431-20643450 | None:intergenic | 35.0% | |
| GCCTAATGTTCATGAATATC+AGG | + | chr3.2:20645439-20645458 | MS.gene60510:intron | 35.0% | |
| TAGTAACATCTTCCCAAGTT+GGG | + | chr3.2:20645235-20645254 | MS.gene60510:intron | 35.0% | |
| TATATATAATCGATCCCGAG+TGG | + | chr3.2:20644866-20644885 | MS.gene60510:intron | 35.0% | |
| TCATCAATGAACCAACGTTA+TGG | - | chr3.2:20645505-20645524 | None:intergenic | 35.0% | |
| TCATGAACTGTTGTATATGC+AGG | + | chr3.2:20644438-20644457 | MS.gene60510:intron | 35.0% | |
| TCCCATCTTTCAACCATTAT+CGG | - | chr3.2:20643459-20643478 | None:intergenic | 35.0% | |
| TGATCTGGGTGAATAAAAGT+TGG | - | chr3.2:20643774-20643793 | None:intergenic | 35.0% | |
| TTCAAGGAGACATTTAACAG+TGG | + | chr3.2:20643299-20643318 | MS.gene60510:CDS | 35.0% | |
| TTCAATGTGATGACCTCTTT+AGG | - | chr3.2:20644337-20644356 | None:intergenic | 35.0% | |
| ! | ATGGGATGCTGCAATTTTAA+AGG | + | chr3.2:20643473-20643492 | MS.gene60510:CDS | 35.0% |
| ! | CTTTTATTCACCCAGATCAT+TGG | + | chr3.2:20643775-20643794 | MS.gene60510:CDS | 35.0% |
| ! | GATTGATTCTCTTAAGGAGA+AGG | + | chr3.2:20644654-20644673 | MS.gene60510:CDS | 35.0% |
| ! | GCAAGTCCTCTTTGATAATA+TGG | + | chr3.2:20645691-20645710 | MS.gene60510:intron | 35.0% |
| ! | TACTGTTTTATGTGGTGAGT+TGG | + | chr3.2:20645289-20645308 | MS.gene60510:intron | 35.0% |
| ! | TGTTATTTGTTAGATGCGGT+GGG | + | chr3.2:20643270-20643289 | MS.gene60510:intron | 35.0% |
| ! | TTGTATTCTGGCTGATATCA+GGG | + | chr3.2:20645332-20645351 | MS.gene60510:intron | 35.0% |
| ! | TTTGTATTCTGGCTGATATC+AGG | + | chr3.2:20645331-20645350 | MS.gene60510:intron | 35.0% |
| !! | AAATTTGTTGGCTGGAAAGA+AGG | - | chr3.2:20645871-20645890 | None:intergenic | 35.0% |
| !! | ATAACGTTGGTTCATTGATG+AGG | + | chr3.2:20645504-20645523 | MS.gene60510:intron | 35.0% |
| !! | GCTGCTGATTTACAATATTC+TGG | + | chr3.2:20644947-20644966 | MS.gene60510:intron | 35.0% |
| !! | GTTTTCAAGACACAATCACT+AGG | + | chr3.2:20645814-20645833 | MS.gene60510:intron | 35.0% |
| !! | TCAGAAAAGATGAGTTGGTA+TGG | + | chr3.2:20643991-20644010 | MS.gene60510:intron | 35.0% |
| !! | TTCAGAAGTTGATGTCTTGA+AGG | + | chr3.2:20644678-20644697 | MS.gene60510:CDS | 35.0% |
| !! | TTCATTTTAGGTGAGCTATG+AGG | - | chr3.2:20644287-20644306 | None:intergenic | 35.0% |
| !! | TTGTTATTTGTTAGATGCGG+TGG | + | chr3.2:20643269-20643288 | MS.gene60510:intron | 35.0% |
| !!! | GAGGAGTTTTTTGCATTTTC+CGG | - | chr3.2:20643944-20643963 | None:intergenic | 35.0% |
| !!! | GGCTTACTGATTTTGTATTC+TGG | + | chr3.2:20645353-20645372 | MS.gene60510:intron | 35.0% |
| !!! | GGGCTGTTTTTGTCAATTTT+AGG | + | chr3.2:20643796-20643815 | MS.gene60510:CDS | 35.0% |
| AAAAACACAGCCCCACAAAT+AGG | - | chr3.2:20643203-20643222 | None:intergenic | 40.0% | |
| AAAGAAACCAAGATACTGGG+AGG | + | chr3.2:20643148-20643167 | MS.gene60510:CDS | 40.0% | |
| AACATTAGGCTTGAGTAAGC+TGG | - | chr3.2:20645429-20645448 | None:intergenic | 40.0% | |
| AAGAATCTCCAAATGGAACC+AGG | + | chr3.2:20643334-20643353 | MS.gene60510:CDS | 40.0% | |
| ACAAAAACAGCCCAATGATC+TGG | - | chr3.2:20643789-20643808 | None:intergenic | 40.0% | |
| ACTAAATCAACTGCCTGAGT+AGG | + | chr3.2:20644890-20644909 | MS.gene60510:intron | 40.0% | |
| ATATGGCCGAGAATATAGCA+GGG | + | chr3.2:20644143-20644162 | MS.gene60510:CDS | 40.0% | |
| ATGGAATGATGTTCCTCAAC+CGG | + | chr3.2:20643368-20643387 | MS.gene60510:CDS | 40.0% | |
| ATTATTTGGGCCAATTGGCA+AGG | + | chr3.2:20643418-20643437 | MS.gene60510:CDS | 40.0% | |
| ATTCCATCGAGTCATTATCC+TGG | - | chr3.2:20643355-20643374 | None:intergenic | 40.0% | |
| CAAAAACAGCCCAATGATCT+GGG | - | chr3.2:20643788-20643807 | None:intergenic | 40.0% | |
| CAAATGGGAACTCACATTAG+AGG | + | chr3.2:20643728-20643747 | MS.gene60510:CDS | 40.0% | |
| CACAAAAAAACGCAAGAAGC+CGG | + | chr3.2:20643922-20643941 | MS.gene60510:CDS | 40.0% | |
| CATCCTTCCATTTCTTTCCA+AGG | - | chr3.2:20643680-20643699 | None:intergenic | 40.0% | |
| CCCATCTTTCAACCATTATC+GGG | - | chr3.2:20643458-20643477 | None:intergenic | 40.0% | |
| CTAGTAACATCTTCCCAAGT+TGG | + | chr3.2:20645234-20645253 | MS.gene60510:intron | 40.0% | |
| CTTGGAAAGAAATGGAAGGA+TGG | + | chr3.2:20643678-20643697 | MS.gene60510:CDS | 40.0% | |
| GAACCAACGTTATGGCAATA+AGG | - | chr3.2:20645497-20645516 | None:intergenic | 40.0% | |
| GAAGCCAATTTCTGATCTCA+GGG | + | chr3.2:20645264-20645283 | MS.gene60510:intron | 40.0% | |
| GGCTGTTATTACTGCCTAAT+AGG | + | chr3.2:20645108-20645127 | MS.gene60510:intron | 40.0% | |
| GTAAATCAGCAGCAAGTGTA+AGG | - | chr3.2:20644940-20644959 | None:intergenic | 40.0% | |
| GTCATTATCCTGGTTCCATT+TGG | - | chr3.2:20643345-20643364 | None:intergenic | 40.0% | |
| GTGCTTGAAGAATCTCCAAA+TGG | + | chr3.2:20643327-20643346 | MS.gene60510:CDS | 40.0% | |
| GTTGTCACATGTGTATGTGA+AGG | - | chr3.2:20643005-20643024 | None:intergenic | 40.0% | |
| GTTTCGCATAAAGATGCCAA+GGG | + | chr3.2:20644180-20644199 | MS.gene60510:CDS | 40.0% | |
| TAAGCCCTGAGATCAGAAAT+TGG | - | chr3.2:20645271-20645290 | None:intergenic | 40.0% | |
| TATCTCCCCTGCTATATTCT+CGG | - | chr3.2:20644152-20644171 | None:intergenic | 40.0% | |
| TCTGTGTATGCAATCTCATC+TGG | + | chr3.2:20644052-20644071 | MS.gene60510:intron | 40.0% | |
| TGCATCTGTATTTCCTACTC+AGG | - | chr3.2:20644906-20644925 | None:intergenic | 40.0% | |
| TGCGATCAGAAAAGATGAGT+TGG | + | chr3.2:20643986-20644005 | MS.gene60510:CDS | 40.0% | |
| TGTTTCGCATAAAGATGCCA+AGG | + | chr3.2:20644179-20644198 | MS.gene60510:CDS | 40.0% | |
| ! | AGCCGAGATTGATTCTCTTA+AGG | + | chr3.2:20644648-20644667 | MS.gene60510:CDS | 40.0% |
| ! | AGTTTGGAGCAGTGCAATTT+AGG | + | chr3.2:20645182-20645201 | MS.gene60510:intron | 40.0% |
| ! | CAGTTGATTTAGTTCCACTC+GGG | - | chr3.2:20644883-20644902 | None:intergenic | 40.0% |
| ! | CCCGATAATGGTTGAAAGAT+GGG | + | chr3.2:20643455-20643474 | MS.gene60510:CDS | 40.0% |
| ! | GAAGCATTTGCCAATGTGTT+TGG | + | chr3.2:20644502-20644521 | MS.gene60510:CDS | 40.0% |
| ! | GCAGTTGATTTAGTTCCACT+CGG | - | chr3.2:20644884-20644903 | None:intergenic | 40.0% |
| ! | TAGCCTTGGAAAGAAATGGA+AGG | + | chr3.2:20643674-20643693 | MS.gene60510:CDS | 40.0% |
| ! | TCAGGGCTTACTGTTTTATG+TGG | + | chr3.2:20645281-20645300 | MS.gene60510:intron | 40.0% |
| ! | TCCCGATAATGGTTGAAAGA+TGG | + | chr3.2:20643454-20643473 | MS.gene60510:CDS | 40.0% |
| !! | CATTTTCTCATTAGCCTCGA+TGG | - | chr3.2:20644617-20644636 | None:intergenic | 40.0% |
| !! | TCTCTAGCCTTGGAAAGAAA+TGG | + | chr3.2:20643670-20643689 | MS.gene60510:CDS | 40.0% |
| !!! | GGCTGTGTTTTTTCTCTTGT+TGG | + | chr3.2:20643211-20643230 | MS.gene60510:intron | 40.0% |
| AATGATGTTCCTCAACCGGT+GGG | + | chr3.2:20643372-20643391 | MS.gene60510:CDS | 45.0% | |
| AATTTAGCAGATTGCCCCAC+CGG | - | chr3.2:20643390-20643409 | None:intergenic | 45.0% | |
| ACACATGATAGTCCGTACCT+TGG | + | chr3.2:20643026-20643045 | MS.gene60510:CDS | 45.0% | |
| ACATCAACCTCCCAGTATCT+TGG | - | chr3.2:20643158-20643177 | None:intergenic | 45.0% | |
| AGAGGACTTGCACCTAAACT+TGG | - | chr3.2:20645682-20645701 | None:intergenic | 45.0% | |
| ATGCGGTGGGTCATATTTCA+AGG | + | chr3.2:20643283-20643302 | MS.gene60510:CDS | 45.0% | |
| CGAAGCCAATTTCTGATCTC+AGG | + | chr3.2:20645263-20645282 | MS.gene60510:intron | 45.0% | |
| CTGGATATGTCCGTTCTATG+GGG | + | chr3.2:20644536-20644555 | MS.gene60510:CDS | 45.0% | |
| GAACCAGGATAATGACTCGA+TGG | + | chr3.2:20643349-20643368 | MS.gene60510:CDS | 45.0% | |
| GAGTCAGTTCCTAGTGTATG+AGG | - | chr3.2:20643963-20643982 | None:intergenic | 45.0% | |
| GATATGGCCGAGAATATAGC+AGG | + | chr3.2:20644142-20644161 | MS.gene60510:CDS | 45.0% | |
| GCTGGATATGTCCGTTCTAT+GGG | + | chr3.2:20644535-20644554 | MS.gene60510:CDS | 45.0% | |
| GTGTTTGGAAAGGAACATGC+TGG | + | chr3.2:20644517-20644536 | MS.gene60510:CDS | 45.0% | |
| TATGGCCGAGAATATAGCAG+GGG | + | chr3.2:20644144-20644163 | MS.gene60510:CDS | 45.0% | |
| TGCTGGATATGTCCGTTCTA+TGG | + | chr3.2:20644534-20644553 | MS.gene60510:CDS | 45.0% | |
| TTATGCCAAGCCCCATAGAA+CGG | - | chr3.2:20644549-20644568 | None:intergenic | 45.0% | |
| ! | ACATCTTCCCAAGTTGGGTT+TGG | + | chr3.2:20645240-20645259 | MS.gene60510:intron | 45.0% |
| !! | TGTGAAGGTGTCACATGTGT+AGG | - | chr3.2:20642990-20643009 | None:intergenic | 45.0% |
| !! | AAATAATAAATAACTAAAAA+AGG | - | chr3.2:20645596-20645615 | None:intergenic | 5.0% |
| ATGATGTTCCTCAACCGGTG+GGG | + | chr3.2:20643373-20643392 | MS.gene60510:CDS | 50.0% | |
| CATCATCATCTCCAGAGCCA+AGG | - | chr3.2:20643046-20643065 | None:intergenic | 50.0% | |
| GAATGATGTTCCTCAACCGG+TGG | + | chr3.2:20643371-20643390 | MS.gene60510:CDS | 50.0% | |
| GAGCGACTAGAGATTCGAGA+TGG | - | chr3.2:20644574-20644593 | None:intergenic | 50.0% | |
| TAGGAGGAAGGCTGAACAAG+TGG | + | chr3.2:20643815-20643834 | MS.gene60510:CDS | 50.0% | |
| TATCAGGGCTTAGAGCAACC+TGG | + | chr3.2:20645455-20645474 | MS.gene60510:intron | 50.0% | |
| TATGTCCGTTCTATGGGGCT+TGG | + | chr3.2:20644541-20644560 | MS.gene60510:CDS | 50.0% | |
| TCATCTCCAGAGCCAAGGTA+CGG | - | chr3.2:20643041-20643060 | None:intergenic | 50.0% | |
| ! | ATTAGCCTCGATGGAAGACG+AGG | - | chr3.2:20644608-20644627 | None:intergenic | 50.0% |
| ! | ATTAGCCTCGTCTTCCATCG+AGG | + | chr3.2:20644600-20644619 | MS.gene60510:CDS | 50.0% |
| GATAGTCCGTACCTTGGCTC+TGG | + | chr3.2:20643032-20643051 | MS.gene60510:CDS | 55.0% | |
| GGCTTCGCCAAACCCAACTT+GGG | - | chr3.2:20645250-20645269 | None:intergenic | 55.0% | |
| GTCACATGTGTAGGCGATGG+AGG | - | chr3.2:20642981-20643000 | None:intergenic | 55.0% | |
| TGGCTTCGCCAAACCCAACT+TGG | - | chr3.2:20645251-20645270 | None:intergenic | 55.0% | |
| ! | GGTGTCACATGTGTAGGCGA+TGG | - | chr3.2:20642984-20643003 | None:intergenic | 55.0% |
| TGAGTCTAGCCACCGCCTTG+AGG | + | chr3.2:20645918-20645937 | MS.gene60510:CDS | 60.0% | |
| !! | ATGGAGGTGTCTCGTGTGGG+TGG | - | chr3.2:20642965-20642984 | None:intergenic | 60.0% |
| !! | GCGATGGAGGTGTCTCGTGT+GGG | - | chr3.2:20642968-20642987 | None:intergenic | 60.0% |
| ! | GAGGTGTCTCGTGTGGGTGG+TGG | - | chr3.2:20642962-20642981 | None:intergenic | 65.0% |
| ! | GCAGATTGCCCCACCGGTTG+AGG | - | chr3.2:20643384-20643403 | None:intergenic | 65.0% |
| !! | GGCGATGGAGGTGTCTCGTG+TGG | - | chr3.2:20642969-20642988 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 20642942 | 20645948 | 20642942 | ID=MS.gene60510 |
| chr3.2 | mRNA | 20642942 | 20645948 | 20642942 | ID=MS.gene60510.t1;Parent=MS.gene60510 |
| chr3.2 | exon | 20642942 | 20643182 | 20642942 | ID=MS.gene60510.t1.exon1;Parent=MS.gene60510.t1 |
| chr3.2 | CDS | 20642942 | 20643182 | 20642942 | ID=cds.MS.gene60510.t1;Parent=MS.gene60510.t1 |
| chr3.2 | exon | 20643283 | 20643530 | 20643283 | ID=MS.gene60510.t1.exon2;Parent=MS.gene60510.t1 |
| chr3.2 | CDS | 20643283 | 20643530 | 20643283 | ID=cds.MS.gene60510.t1;Parent=MS.gene60510.t1 |
| chr3.2 | exon | 20643624 | 20643836 | 20643624 | ID=MS.gene60510.t1.exon3;Parent=MS.gene60510.t1 |
| chr3.2 | CDS | 20643624 | 20643836 | 20643624 | ID=cds.MS.gene60510.t1;Parent=MS.gene60510.t1 |
| chr3.2 | exon | 20643915 | 20644007 | 20643915 | ID=MS.gene60510.t1.exon4;Parent=MS.gene60510.t1 |
| chr3.2 | CDS | 20643915 | 20644007 | 20643915 | ID=cds.MS.gene60510.t1;Parent=MS.gene60510.t1 |
| chr3.2 | exon | 20644135 | 20644236 | 20644135 | ID=MS.gene60510.t1.exon5;Parent=MS.gene60510.t1 |
| chr3.2 | CDS | 20644135 | 20644236 | 20644135 | ID=cds.MS.gene60510.t1;Parent=MS.gene60510.t1 |
| chr3.2 | exon | 20644460 | 20644753 | 20644460 | ID=MS.gene60510.t1.exon6;Parent=MS.gene60510.t1 |
| chr3.2 | CDS | 20644460 | 20644753 | 20644460 | ID=cds.MS.gene60510.t1;Parent=MS.gene60510.t1 |
| chr3.2 | exon | 20645880 | 20645948 | 20645880 | ID=MS.gene60510.t1.exon7;Parent=MS.gene60510.t1 |
| chr3.2 | CDS | 20645880 | 20645948 | 20645880 | ID=cds.MS.gene60510.t1;Parent=MS.gene60510.t1 |
| Gene Sequence |
| Protein sequence |
