Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61113.t1 | XP_003606627.1 | 97.9 | 141 | 3 | 0 | 1 | 141 | 1 | 141 | 2.40E-41 | 179.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61113.t1 | Q1S9I9 | 97.9 | 141 | 3 | 0 | 1 | 141 | 1 | 141 | 3.2e-42 | 173.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61113.t1 | G7JTQ7 | 97.9 | 141 | 3 | 0 | 1 | 141 | 1 | 141 | 1.7e-41 | 179.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050901 | MS.gene61113 | 0.80126 | 9.79E-49 | -1.69E-46 |
| MS.gene05608 | MS.gene61113 | 0.801529 | 8.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61113.t1 | MTR_4g063220 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 5.56e-96 | 277 |
| MS.gene61113.t1 | MTR_4g063990 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 5.56e-96 | 277 |
| MS.gene61113.t1 | MTR_4g063200 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 5.56e-96 | 277 |
| MS.gene61113.t1 | MTR_4g064020 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 5.56e-96 | 277 |
| MS.gene61113.t1 | MTR_4g071180 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 6.92e-96 | 277 |
| MS.gene61113.t1 | MTR_4g070240 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 6.92e-96 | 277 |
| MS.gene61113.t1 | MTR_4g070245 | 97.163 | 141 | 4 | 0 | 1 | 141 | 1 | 141 | 3.03e-94 | 273 |
| MS.gene61113.t1 | MTR_4g064983 | 97.872 | 141 | 3 | 0 | 1 | 141 | 1 | 141 | 5.84e-94 | 275 |
| MS.gene61113.t1 | MTR_4g063240 | 97.872 | 141 | 2 | 1 | 1 | 141 | 1 | 140 | 9.55e-94 | 271 |
| MS.gene61113.t1 | MTR_4g088025 | 94.326 | 141 | 3 | 1 | 1 | 141 | 1 | 136 | 1.79e-89 | 260 |
| MS.gene61113.t1 | MTR_4g063275 | 95.745 | 141 | 6 | 0 | 1 | 141 | 1 | 141 | 6.64e-87 | 254 |
| MS.gene61113.t1 | MTR_1g090780 | 88.652 | 141 | 5 | 3 | 1 | 141 | 1 | 130 | 5.30e-72 | 216 |
| MS.gene61113.t1 | MTR_1g492910 | 87.943 | 141 | 6 | 3 | 1 | 141 | 1 | 130 | 2.08e-71 | 214 |
| MS.gene61113.t1 | MTR_1g068600 | 92.308 | 104 | 4 | 1 | 38 | 141 | 30 | 129 | 6.37e-58 | 180 |
| MS.gene61113.t1 | MTR_7g099960 | 92.308 | 104 | 5 | 1 | 38 | 141 | 31 | 131 | 2.13e-57 | 179 |
| MS.gene61113.t1 | MTR_2g084480 | 62.651 | 83 | 31 | 0 | 59 | 141 | 136 | 218 | 7.81e-33 | 119 |
| MS.gene61113.t1 | MTR_8g069990 | 67.742 | 93 | 22 | 3 | 15 | 107 | 4 | 88 | 1.53e-32 | 114 |
| MS.gene61113.t1 | MTR_4g063270 | 90.196 | 51 | 5 | 0 | 86 | 136 | 1 | 51 | 8.65e-26 | 95.5 |
| MS.gene61113.t1 | MTR_7g114580 | 88.235 | 34 | 4 | 0 | 108 | 141 | 11 | 44 | 3.97e-14 | 65.1 |
| MS.gene61113.t1 | MTR_4g032777 | 39.773 | 88 | 48 | 1 | 50 | 132 | 23 | 110 | 6.74e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61113.t1 | AT3G45980 | 88.194 | 144 | 13 | 2 | 1 | 141 | 1 | 143 | 1.68e-77 | 230 |
| MS.gene61113.t1 | AT2G28720 | 85.417 | 144 | 18 | 1 | 1 | 141 | 1 | 144 | 1.68e-74 | 223 |
| MS.gene61113.t1 | AT1G07790 | 85.417 | 144 | 15 | 2 | 1 | 141 | 1 | 141 | 2.47e-73 | 220 |
| MS.gene61113.t1 | AT5G59910 | 90.000 | 130 | 10 | 2 | 12 | 141 | 17 | 143 | 2.84e-71 | 214 |
| MS.gene61113.t1 | AT3G46030 | 94.118 | 119 | 6 | 1 | 23 | 141 | 21 | 138 | 1.35e-69 | 210 |
| MS.gene61113.t1 | AT2G37470 | 80.986 | 142 | 16 | 3 | 1 | 141 | 1 | 132 | 3.02e-65 | 199 |
| MS.gene61113.t1 | AT3G53650 | 80.986 | 142 | 15 | 3 | 1 | 141 | 1 | 131 | 4.20e-63 | 193 |
| MS.gene61113.t1 | AT5G22880 | 86.232 | 138 | 17 | 2 | 4 | 141 | 3 | 138 | 2.01e-60 | 187 |
| MS.gene61113.t1 | AT5G02570 | 78.723 | 141 | 14 | 1 | 1 | 141 | 1 | 125 | 2.80e-60 | 186 |
| MS.gene61113.t1 | AT3G09480 | 83.193 | 119 | 16 | 1 | 23 | 141 | 5 | 119 | 3.55e-56 | 176 |
| MS.gene61113.t1 | AT1G08170 | 57.303 | 89 | 38 | 0 | 53 | 141 | 143 | 231 | 3.14e-34 | 123 |
Find 62 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAATCTGACTGAGAAAT+TGG | 0.148592 | 4.4:-42623167 | None:intergenic |
| TTGCAGCTGAATGTTGTTTC+AGG | 0.237985 | 4.4:-42623199 | None:intergenic |
| TTGTTTCAGGAAAATAATTC+TGG | 0.250469 | 4.4:-42623186 | None:intergenic |
| GGCAGCTTCTTCCCGGCCTT+TGG | 0.287340 | 4.4:-42621776 | None:intergenic |
| GGCGGCGGAGCCACCTTCCT+TGG | 0.299013 | 4.4:-42621798 | None:intergenic |
| TTCCTTGGGCAGCTTCTTCC+CGG | 0.311991 | 4.4:-42621783 | None:intergenic |
| CCCGGCCTTTGGCTTCTTCT+CGG | 0.319891 | 4.4:-42621765 | None:intergenic |
| ACTTGTTCTGCCCGGTGAAT+TGG | 0.339006 | 4.4:+42622051 | MS.gene61113:CDS |
| CATGCTATTAGTGGTACTTC+TGG | 0.346547 | 4.4:+42623444 | MS.gene61113:CDS |
| TTGCTTGAGATACCAATGTC+TGG | 0.348013 | 4.4:-42621902 | None:intergenic |
| GCTGGCTTCTTCTCTCCCTT+TGG | 0.368494 | 4.4:-42621689 | None:intergenic |
| GCCTTTGGCTTCTTCTCGGC+CGG | 0.416799 | 4.4:-42621761 | None:intergenic |
| CTTCTTCTTGTCTCCGGCGG+CGG | 0.417024 | 4.4:-42621813 | None:intergenic |
| TCCTTCAGAAACAGCATGCT+TGG | 0.424952 | 4.4:-42622074 | None:intergenic |
| GTGGATTTCTTCTCCTCTGC+GGG | 0.433451 | 4.4:-42621722 | None:intergenic |
| ATACAAGATCTATATCTTCA+AGG | 0.439060 | 4.4:+42621862 | MS.gene61113:CDS |
| TCTCTTCTTCTTCTTGTCTC+CGG | 0.444808 | 4.4:-42621819 | None:intergenic |
| GCCGAGAAGAAGCCAAAGGC+CGG | 0.450246 | 4.4:+42621764 | MS.gene61113:CDS |
| GCGGCGGAGCCACCTTCCTT+GGG | 0.451415 | 4.4:-42621797 | None:intergenic |
| AGAAGCCAACCATCACTTCC+AGG | 0.453552 | 4.4:+42622008 | MS.gene61113:CDS |
| AGTAGATCTCATGCTATTAG+TGG | 0.464943 | 4.4:+42623435 | MS.gene61113:CDS |
| TCTGCGGGTTTCTTCTCCGC+TGG | 0.466008 | 4.4:-42621707 | None:intergenic |
| AGCATGCTTGGCCAATTCAC+CGG | 0.471051 | 4.4:-42622062 | None:intergenic |
| GAAATTGGTTTAGATTCTAA+AGG | 0.474107 | 4.4:-42623152 | None:intergenic |
| AAGGAAGGTGGCTCCGCCGC+CGG | 0.489167 | 4.4:+42621800 | MS.gene61113:CDS |
| GACAGCAGTCTGAATTTCCC+TGG | 0.496873 | 4.4:-42622026 | None:intergenic |
| CAAGTAGGTACCTGGGGTGT+AGG | 0.501802 | 4.4:-42623335 | None:intergenic |
| CCGAGAAGAAGCCAAAGGCC+GGG | 0.504134 | 4.4:+42621765 | MS.gene61113:CDS |
| GGTTTAGATTCTAAAGGAAG+AGG | 0.518499 | 4.4:-42623146 | None:intergenic |
| ATCAAAGCCCTTGACAGTCC+AGG | 0.518828 | 4.4:+42623268 | MS.gene61113:CDS |
| GCCAAGCATGCTGTTTCTGA+AGG | 0.521533 | 4.4:+42622073 | MS.gene61113:CDS |
| CTGAATTTCCCTGGAAGTGA+TGG | 0.524717 | 4.4:-42622017 | None:intergenic |
| GGTATCTCAAGCAAAGCAAT+GGG | 0.524741 | 4.4:+42621911 | MS.gene61113:CDS |
| TGGTATCTCAAGCAAAGCAA+TGG | 0.524801 | 4.4:+42621910 | MS.gene61113:CDS |
| GCATGCTTGGCCAATTCACC+GGG | 0.525255 | 4.4:-42622061 | None:intergenic |
| AAGTGTTAGCAGCTGCAACC+TGG | 0.526211 | 4.4:-42623286 | None:intergenic |
| ATTTCCCTGGAAGTGATGGT+TGG | 0.528298 | 4.4:-42622013 | None:intergenic |
| TCGGTGATTTGAAGCGAAGA+TGG | 0.529308 | 4.4:-42623311 | None:intergenic |
| TGCTTGAGATACCAATGTCT+GGG | 0.532971 | 4.4:-42621901 | None:intergenic |
| GAAATCCACCGTCGCAGAGA+AGG | 0.535764 | 4.4:+42621736 | MS.gene61113:CDS |
| GAAATTCTCAATGGCACCAA+AGG | 0.540291 | 4.4:+42621673 | None:intergenic |
| GGCCGGAGCCTTCTCTGCGA+CGG | 0.547872 | 4.4:-42621744 | None:intergenic |
| AGCTGCAACCTGGACTGTCA+AGG | 0.551856 | 4.4:-42623276 | None:intergenic |
| CGGAGCCTTCTCTGCGACGG+TGG | 0.553608 | 4.4:-42621741 | None:intergenic |
| AAATTCTCAATGGCACCAAA+GGG | 0.562232 | 4.4:+42621674 | None:intergenic |
| GGGAAGAAGCTGCCCAAGGA+AGG | 0.563967 | 4.4:+42621785 | MS.gene61113:CDS |
| GCTGCAACCTGGACTGTCAA+GGG | 0.565572 | 4.4:-42623275 | None:intergenic |
| TTTATACATTGCATATACCT+CGG | 0.574656 | 4.4:+42623232 | MS.gene61113:CDS |
| CACCGTCGCAGAGAAGGCTC+CGG | 0.576144 | 4.4:+42621742 | MS.gene61113:CDS |
| AGGTACCTGGGGTGTAGGAT+CGG | 0.576402 | 4.4:-42623330 | None:intergenic |
| GCTGTCAGACTTGTTCTGCC+CGG | 0.580285 | 4.4:+42622043 | MS.gene61113:CDS |
| AAGAAGCTGCCCAAGGAAGG+TGG | 0.582244 | 4.4:+42621788 | MS.gene61113:CDS |
| GGCCGGGAAGAAGCTGCCCA+AGG | 0.607201 | 4.4:+42621781 | MS.gene61113:CDS |
| AAACAAGTTCACCCAGACAT+TGG | 0.612279 | 4.4:+42621890 | MS.gene61113:CDS |
| TCCGGCCGAGAAGAAGCCAA+AGG | 0.621006 | 4.4:+42621760 | MS.gene61113:CDS |
| AATCACCGATCCTACACCCC+AGG | 0.622713 | 4.4:+42623325 | MS.gene61113:CDS |
| TGATGATTTCACAGTTGCCG+AGG | 0.628381 | 4.4:-42623249 | None:intergenic |
| GAAGCCAACCATCACTTCCA+GGG | 0.633594 | 4.4:+42622009 | MS.gene61113:CDS |
| AAAGGGAGAGAAGAAGCCAG+CGG | 0.642633 | 4.4:+42621691 | MS.gene61113:CDS |
| GGTGGATTTCTTCTCCTCTG+CGG | 0.645875 | 4.4:-42621723 | None:intergenic |
| CTTCTTCTTCTTGTCTCCGG+CGG | 0.655854 | 4.4:-42621816 | None:intergenic |
| AGCGGAGAAGAAACCCGCAG+AGG | 0.676003 | 4.4:+42621709 | MS.gene61113:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTAAAAAAACCTAA+TGG | - | chr4.4:42622175-42622194 | None:intergenic | 10.0% |
| !! | CACATAAATCATTAAAATAA+TGG | - | chr4.4:42622338-42622357 | None:intergenic | 15.0% |
| !! | TGAATTTGTAACAAAGTAAT+GGG | + | chr4.4:42622871-42622890 | MS.gene61113:intron | 20.0% |
| !! | TTGAATTTGTAACAAAGTAA+TGG | + | chr4.4:42622870-42622889 | MS.gene61113:intron | 20.0% |
| !!! | AATTCTTAATTTTTTTGCCA+CGG | - | chr4.4:42622401-42622420 | None:intergenic | 20.0% |
| ! | AAAATAAACCCAATTCTAGA+AGG | - | chr4.4:42623391-42623410 | None:intergenic | 25.0% |
| ! | ACTGAGTAAGTAATTTGAAT+TGG | + | chr4.4:42622591-42622610 | MS.gene61113:intron | 25.0% |
| ! | ATACAAGATCTATATCTTCA+AGG | + | chr4.4:42621862-42621881 | MS.gene61113:CDS | 25.0% |
| ! | CTAAGTTGTAATGAACTAAT+TGG | + | chr4.4:42622208-42622227 | MS.gene61113:intron | 25.0% |
| ! | TATAAATCAATCGAAAACAG+AGG | - | chr4.4:42622968-42622987 | None:intergenic | 25.0% |
| ! | TGATTCTGAATCTTGAAAAA+GGG | - | chr4.4:42622945-42622964 | None:intergenic | 25.0% |
| ! | TTGTTTCAGGAAAATAATTC+TGG | - | chr4.4:42623189-42623208 | None:intergenic | 25.0% |
| ! | TTTAGTCATACCAATACAAA+TGG | - | chr4.4:42623055-42623074 | None:intergenic | 25.0% |
| ! | TTTATACATTGCATATACCT+CGG | + | chr4.4:42623232-42623251 | MS.gene61113:CDS | 25.0% |
| !! | ACAAACTTTTTGCTAAGTTA+TGG | - | chr4.4:42622443-42622462 | None:intergenic | 25.0% |
| !! | ATCAAACATCCTAAATTTTC+TGG | - | chr4.4:42622661-42622680 | None:intergenic | 25.0% |
| !! | GAAATTGGTTTAGATTCTAA+AGG | - | chr4.4:42623155-42623174 | None:intergenic | 25.0% |
| !! | GTATTAAAATGGTGGAATTA+AGG | + | chr4.4:42622250-42622269 | MS.gene61113:intron | 25.0% |
| !! | GTTCCTTTTGTGTATTAAAA+TGG | + | chr4.4:42622239-42622258 | MS.gene61113:intron | 25.0% |
| !!! | AAAATCTGCACTATTTTGAA+GGG | - | chr4.4:42623078-42623097 | None:intergenic | 25.0% |
| !!! | TATGTTGGTAGTTTTGTAAA+TGG | - | chr4.4:42623109-42623128 | None:intergenic | 25.0% |
| AAAATATGCTGCCAATTCTT+TGG | - | chr4.4:42622843-42622862 | None:intergenic | 30.0% | |
| AAACTACCAACATAATTCCT+AGG | + | chr4.4:42623115-42623134 | MS.gene61113:intron | 30.0% | |
| AATGTTAATCTCAGTCAAGT+AGG | - | chr4.4:42623353-42623372 | None:intergenic | 30.0% | |
| AATTGCTTGTGTAGTACAAT+TGG | + | chr4.4:42622287-42622306 | MS.gene61113:intron | 30.0% | |
| AGTCTAAGAACTTGTAAACT+TGG | - | chr4.4:42622113-42622132 | None:intergenic | 30.0% | |
| ATACTCTGCATTTATGGATT+TGG | + | chr4.4:42622486-42622505 | MS.gene61113:intron | 30.0% | |
| ATTGCTTGTGTAGTACAATT+GGG | + | chr4.4:42622288-42622307 | MS.gene61113:intron | 30.0% | |
| GAGCTATACTCTTTACAAAT+AGG | - | chr4.4:42622781-42622800 | None:intergenic | 30.0% | |
| GAGTAAGTAATTTGAATTGG+TGG | + | chr4.4:42622594-42622613 | MS.gene61113:intron | 30.0% | |
| GTGATTCTGAATCTTGAAAA+AGG | - | chr4.4:42622946-42622965 | None:intergenic | 30.0% | |
| GTGTTTAAACATGAACCATT+AGG | + | chr4.4:42622157-42622176 | MS.gene61113:intron | 30.0% | |
| GTTCACTCATAATCAACAAA+AGG | - | chr4.4:42622706-42622725 | None:intergenic | 30.0% | |
| TAATCCTGTCCAGAAAATTT+AGG | + | chr4.4:42622649-42622668 | MS.gene61113:intron | 30.0% | |
| TGCAAAATACTCTGCATTTA+TGG | + | chr4.4:42622480-42622499 | MS.gene61113:intron | 30.0% | |
| TTAGACTTGAAACTTTGTTG+TGG | + | chr4.4:42622126-42622145 | MS.gene61113:intron | 30.0% | |
| ! | CCTTTTGTGTATTAAAATGG+TGG | + | chr4.4:42622242-42622261 | MS.gene61113:intron | 30.0% |
| !! | ACTACATGTGTTTTTACAGT+AGG | + | chr4.4:42622626-42622645 | MS.gene61113:intron | 30.0% |
| !! | CAAAATCTGCACTATTTTGA+AGG | - | chr4.4:42623079-42623098 | None:intergenic | 30.0% |
| !! | CCACCATTTTAATACACAAA+AGG | - | chr4.4:42622245-42622264 | None:intergenic | 30.0% |
| AATACAAATGGCCTATAAGC+TGG | - | chr4.4:42623043-42623062 | None:intergenic | 35.0% | |
| AGCTTATAGGCCATTTGTAT+TGG | + | chr4.4:42623042-42623061 | MS.gene61113:intron | 35.0% | |
| AGTAGATCTCATGCTATTAG+TGG | + | chr4.4:42623435-42623454 | MS.gene61113:CDS | 35.0% | |
| GTGCTTTCGTGTATATGTTT+GGG | + | chr4.4:42622903-42622922 | MS.gene61113:intron | 35.0% | |
| TTGCCTATCTTCCAAAGAAT+TGG | + | chr4.4:42622829-42622848 | MS.gene61113:intron | 35.0% | |
| TTTCAGAGCCTAATAGAGTT+TGG | - | chr4.4:42623008-42623027 | None:intergenic | 35.0% | |
| ! | ACATCCTAAATTTTCTGGAC+AGG | - | chr4.4:42622656-42622675 | None:intergenic | 35.0% |
| ! | ATTCTTTGGAAGATAGGCAA+AGG | - | chr4.4:42622829-42622848 | None:intergenic | 35.0% |
| ! | GGTTTAGATTCTAAAGGAAG+AGG | - | chr4.4:42623149-42623168 | None:intergenic | 35.0% |
| ! | TGTAACAAAGTAATGGGATC+TGG | + | chr4.4:42622877-42622896 | MS.gene61113:intron | 35.0% |
| !! | AAACTCTATTAGGCTCTGAA+AGG | + | chr4.4:42623007-42623026 | MS.gene61113:intron | 35.0% |
| !! | AACTCTATTAGGCTCTGAAA+GGG | + | chr4.4:42623008-42623027 | MS.gene61113:intron | 35.0% |
| !! | GCTTTGAACCTTCTAGAATT+GGG | + | chr4.4:42623380-42623399 | MS.gene61113:intron | 35.0% |
| !! | TATGTTTGGGTGGTGTTATT+TGG | + | chr4.4:42622916-42622935 | MS.gene61113:intron | 35.0% |
| !! | TGCTTTGAACCTTCTAGAAT+TGG | + | chr4.4:42623379-42623398 | MS.gene61113:intron | 35.0% |
| AAACAAGTTCACCCAGACAT+TGG | + | chr4.4:42621890-42621909 | MS.gene61113:CDS | 40.0% | |
| CATGCTATTAGTGGTACTTC+TGG | + | chr4.4:42623444-42623463 | MS.gene61113:CDS | 40.0% | |
| CGTAATCTGTTACTAAACCG+TGG | + | chr4.4:42622381-42622400 | MS.gene61113:intron | 40.0% | |
| CTGGAATCTGACTGAGAAAT+TGG | - | chr4.4:42623170-42623189 | None:intergenic | 40.0% | |
| CTTTCGTGTATATGTTTGGG+TGG | + | chr4.4:42622906-42622925 | MS.gene61113:intron | 40.0% | |
| GAGACTCCTAGGAATTATGT+TGG | - | chr4.4:42623124-42623143 | None:intergenic | 40.0% | |
| GCATGCATAACAACAAAAGC+TGG | - | chr4.4:42623414-42623433 | None:intergenic | 40.0% | |
| GGTATCTCAAGCAAAGCAAT+GGG | + | chr4.4:42621911-42621930 | MS.gene61113:CDS | 40.0% | |
| GGTGCTTTCGTGTATATGTT+TGG | + | chr4.4:42622902-42622921 | MS.gene61113:intron | 40.0% | |
| TCCTCTAGCCAAACTCTATT+AGG | + | chr4.4:42622997-42623016 | MS.gene61113:intron | 40.0% | |
| TCTCTTCTTCTTCTTGTCTC+CGG | - | chr4.4:42621822-42621841 | None:intergenic | 40.0% | |
| TGCTTGAGATACCAATGTCT+GGG | - | chr4.4:42621904-42621923 | None:intergenic | 40.0% | |
| TGGATTTGGATTCCTCCTAT+TGG | + | chr4.4:42622500-42622519 | MS.gene61113:intron | 40.0% | |
| TGGTATCTCAAGCAAAGCAA+TGG | + | chr4.4:42621910-42621929 | MS.gene61113:CDS | 40.0% | |
| TTGCTTGAGATACCAATGTC+TGG | - | chr4.4:42621905-42621924 | None:intergenic | 40.0% | |
| ! | ACAAAGTAATGGGATCTGGT+TGG | + | chr4.4:42622881-42622900 | MS.gene61113:intron | 40.0% |
| ! | CTGCCAATTCTTTGGAAGAT+AGG | - | chr4.4:42622835-42622854 | None:intergenic | 40.0% |
| !! | TTGCAGCTGAATGTTGTTTC+AGG | - | chr4.4:42623202-42623221 | None:intergenic | 40.0% |
| AATAATGGCAGCGTGCATCT+TGG | - | chr4.4:42622323-42622342 | None:intergenic | 45.0% | |
| ACTTGCCTATCTTCTGCTTG+AGG | + | chr4.4:42622729-42622748 | MS.gene61113:intron | 45.0% | |
| ATCTCAGTCAAGTAGGTACC+TGG | - | chr4.4:42623346-42623365 | None:intergenic | 45.0% | |
| ATTTCCCTGGAAGTGATGGT+TGG | - | chr4.4:42622016-42622035 | None:intergenic | 45.0% | |
| CTGAATTTCCCTGGAAGTGA+TGG | - | chr4.4:42622020-42622039 | None:intergenic | 45.0% | |
| GCCTAATAGAGTTTGGCTAG+AGG | - | chr4.4:42623001-42623020 | None:intergenic | 45.0% | |
| GTTCACCTCAAGCAGAAGAT+AGG | - | chr4.4:42622737-42622756 | None:intergenic | 45.0% | |
| TCCTTCAGAAACAGCATGCT+TGG | - | chr4.4:42622077-42622096 | None:intergenic | 45.0% | |
| TCTCAGTCAAGTAGGTACCT+GGG | - | chr4.4:42623345-42623364 | None:intergenic | 45.0% | |
| TGATGATTTCACAGTTGCCG+AGG | - | chr4.4:42623252-42623271 | None:intergenic | 45.0% | |
| ! | TCGGTGATTTGAAGCGAAGA+TGG | - | chr4.4:42623314-42623333 | None:intergenic | 45.0% |
| !! | AGGCTCTGAAAGGGCATAAT+GGG | + | chr4.4:42623017-42623036 | MS.gene61113:intron | 45.0% |
| !! | TAGGCTCTGAAAGGGCATAA+TGG | + | chr4.4:42623016-42623035 | MS.gene61113:intron | 45.0% |
| AAAGGGAGAGAAGAAGCCAG+CGG | + | chr4.4:42621691-42621710 | MS.gene61113:CDS | 50.0% | |
| AAGTGTTAGCAGCTGCAACC+TGG | - | chr4.4:42623289-42623308 | None:intergenic | 50.0% | |
| ACAAATGCGCCACAGCCAAT+AGG | - | chr4.4:42622518-42622537 | None:intergenic | 50.0% | |
| ACTTGTTCTGCCCGGTGAAT+TGG | + | chr4.4:42622051-42622070 | MS.gene61113:CDS | 50.0% | |
| AGAAGCCAACCATCACTTCC+AGG | + | chr4.4:42622008-42622027 | MS.gene61113:CDS | 50.0% | |
| AGCATGCTTGGCCAATTCAC+CGG | - | chr4.4:42622065-42622084 | None:intergenic | 50.0% | |
| AGGAAGAGGTAGAGACTCCT+AGG | - | chr4.4:42623135-42623154 | None:intergenic | 50.0% | |
| ATCAAAGCCCTTGACAGTCC+AGG | + | chr4.4:42623268-42623287 | MS.gene61113:CDS | 50.0% | |
| CTCAGTCAAGTAGGTACCTG+GGG | - | chr4.4:42623344-42623363 | None:intergenic | 50.0% | |
| CTTCTTCTTCTTGTCTCCGG+CGG | - | chr4.4:42621819-42621838 | None:intergenic | 50.0% | |
| GAAGCCAACCATCACTTCCA+GGG | + | chr4.4:42622009-42622028 | MS.gene61113:CDS | 50.0% | |
| GACAGCAGTCTGAATTTCCC+TGG | - | chr4.4:42622029-42622048 | None:intergenic | 50.0% | |
| GTGGATTTCTTCTCCTCTGC+GGG | - | chr4.4:42621725-42621744 | None:intergenic | 50.0% | |
| ! | GGTGGATTTCTTCTCCTCTG+CGG | - | chr4.4:42621726-42621745 | None:intergenic | 50.0% |
| ! | TGGATTCCTCCTATTGGCTG+TGG | + | chr4.4:42622506-42622525 | MS.gene61113:intron | 50.0% |
| !! | GCCAAGCATGCTGTTTCTGA+AGG | + | chr4.4:42622073-42622092 | MS.gene61113:CDS | 50.0% |
| !! | GGCATAATGGGCCAGCTTAT+AGG | + | chr4.4:42623029-42623048 | MS.gene61113:intron | 50.0% |
| AAGAAGCTGCCCAAGGAAGG+TGG | + | chr4.4:42621788-42621807 | MS.gene61113:CDS | 55.0% | |
| AATCACCGATCCTACACCCC+AGG | + | chr4.4:42623325-42623344 | MS.gene61113:CDS | 55.0% | |
| AATGCGCCACAGCCAATAGG+AGG | - | chr4.4:42622515-42622534 | None:intergenic | 55.0% | |
| AGCTGCAACCTGGACTGTCA+AGG | - | chr4.4:42623279-42623298 | None:intergenic | 55.0% | |
| AGGTACCTGGGGTGTAGGAT+CGG | - | chr4.4:42623333-42623352 | None:intergenic | 55.0% | |
| CAAGTAGGTACCTGGGGTGT+AGG | - | chr4.4:42623338-42623357 | None:intergenic | 55.0% | |
| GAAATCCACCGTCGCAGAGA+AGG | + | chr4.4:42621736-42621755 | MS.gene61113:CDS | 55.0% | |
| GCATGCTTGGCCAATTCACC+GGG | - | chr4.4:42622064-42622083 | None:intergenic | 55.0% | |
| GCTGCAACCTGGACTGTCAA+GGG | - | chr4.4:42623278-42623297 | None:intergenic | 55.0% | |
| TTCCTTGGGCAGCTTCTTCC+CGG | - | chr4.4:42621786-42621805 | None:intergenic | 55.0% | |
| ! | GCTGGCTTCTTCTCTCCCTT+TGG | - | chr4.4:42621692-42621711 | None:intergenic | 55.0% |
| ! | GCTGTCAGACTTGTTCTGCC+CGG | + | chr4.4:42622043-42622062 | MS.gene61113:CDS | 55.0% |
| AGCGGAGAAGAAACCCGCAG+AGG | + | chr4.4:42621709-42621728 | MS.gene61113:CDS | 60.0% | |
| CCGAGAAGAAGCCAAAGGCC+GGG | + | chr4.4:42621765-42621784 | MS.gene61113:CDS | 60.0% | |
| CTTCTTCTTGTCTCCGGCGG+CGG | - | chr4.4:42621816-42621835 | None:intergenic | 60.0% | |
| GCCGAGAAGAAGCCAAAGGC+CGG | + | chr4.4:42621764-42621783 | MS.gene61113:CDS | 60.0% | |
| GGGAAGAAGCTGCCCAAGGA+AGG | + | chr4.4:42621785-42621804 | MS.gene61113:CDS | 60.0% | |
| TCCGGCCGAGAAGAAGCCAA+AGG | + | chr4.4:42621760-42621779 | MS.gene61113:CDS | 60.0% | |
| TCTGCGGGTTTCTTCTCCGC+TGG | - | chr4.4:42621710-42621729 | None:intergenic | 60.0% | |
| ! | CCCGGCCTTTGGCTTCTTCT+CGG | - | chr4.4:42621768-42621787 | None:intergenic | 60.0% |
| ! | GCCTTTGGCTTCTTCTCGGC+CGG | - | chr4.4:42621764-42621783 | None:intergenic | 60.0% |
| CACCGTCGCAGAGAAGGCTC+CGG | + | chr4.4:42621742-42621761 | MS.gene61113:CDS | 65.0% | |
| GGCAGCTTCTTCCCGGCCTT+TGG | - | chr4.4:42621779-42621798 | None:intergenic | 65.0% | |
| AAGGAAGGTGGCTCCGCCGC+CGG | + | chr4.4:42621800-42621819 | MS.gene61113:CDS | 70.0% | |
| CGGAGCCTTCTCTGCGACGG+TGG | - | chr4.4:42621744-42621763 | None:intergenic | 70.0% | |
| GCGGCGGAGCCACCTTCCTT+GGG | - | chr4.4:42621800-42621819 | None:intergenic | 70.0% | |
| GGCCGGAGCCTTCTCTGCGA+CGG | - | chr4.4:42621747-42621766 | None:intergenic | 70.0% | |
| GGCCGGGAAGAAGCTGCCCA+AGG | + | chr4.4:42621781-42621800 | MS.gene61113:CDS | 70.0% | |
| GGCGGCGGAGCCACCTTCCT+TGG | - | chr4.4:42621801-42621820 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 42621683 | 42623498 | 42621683 | ID=MS.gene61113 |
| chr4.4 | mRNA | 42621683 | 42623498 | 42621683 | ID=MS.gene61113.t1;Parent=MS.gene61113 |
| chr4.4 | exon | 42621683 | 42622105 | 42621683 | ID=MS.gene61113.t1.exon1;Parent=MS.gene61113.t1 |
| chr4.4 | CDS | 42621683 | 42622105 | 42621683 | ID=cds.MS.gene61113.t1;Parent=MS.gene61113.t1 |
| chr4.4 | exon | 42623137 | 42623346 | 42623137 | ID=MS.gene61113.t1.exon2;Parent=MS.gene61113.t1 |
| chr4.4 | CDS | 42623137 | 42623346 | 42623137 | ID=cds.MS.gene61113.t1;Parent=MS.gene61113.t1 |
| chr4.4 | exon | 42623415 | 42623498 | 42623415 | ID=MS.gene61113.t1.exon3;Parent=MS.gene61113.t1 |
| chr4.4 | CDS | 42623415 | 42623498 | 42623415 | ID=cds.MS.gene61113.t1;Parent=MS.gene61113.t1 |
| Gene Sequence |
| Protein sequence |
