Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61209.t1 | XP_003597769.1 | 94.3 | 544 | 26 | 2 | 1 | 540 | 218 | 760 | 3.30E-288 | 1000.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61209.t1 | Q93YU8 | 29.5 | 440 | 292 | 7 | 89 | 518 | 347 | 778 | 3.8e-43 | 177.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61209.t1 | G7II39 | 94.3 | 544 | 26 | 2 | 1 | 540 | 218 | 760 | 2.4e-288 | 1000.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049404 | MS.gene61209 | 0.807023 | 6.19E-50 | -1.69E-46 |
MS.gene051198 | MS.gene61209 | 0.837928 | 3.89E-57 | -1.69E-46 |
MS.gene051279 | MS.gene61209 | 0.838732 | 2.41E-57 | -1.69E-46 |
MS.gene051744 | MS.gene61209 | 0.803764 | 2.98E-49 | -1.69E-46 |
MS.gene051800 | MS.gene61209 | 0.818266 | 2.14E-52 | -1.69E-46 |
MS.gene052037 | MS.gene61209 | 0.805454 | 1.32E-49 | -1.69E-46 |
MS.gene053621 | MS.gene61209 | 0.821633 | 3.64E-53 | -1.69E-46 |
MS.gene055875 | MS.gene61209 | 0.803235 | 3.84E-49 | -1.69E-46 |
MS.gene05686 | MS.gene61209 | 0.814973 | 1.17E-51 | -1.69E-46 |
MS.gene058010 | MS.gene61209 | 0.84045 | 8.63E-58 | -1.69E-46 |
MS.gene06052 | MS.gene61209 | 0.815311 | 9.87E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61209.t1 | MTR_2g102050 | 96.875 | 544 | 12 | 2 | 1 | 540 | 218 | 760 | 0.0 | 1092 |
MS.gene61209.t1 | MTR_3g109450 | 63.920 | 449 | 158 | 3 | 84 | 532 | 260 | 704 | 0.0 | 586 |
MS.gene61209.t1 | MTR_4g012430 | 58.561 | 403 | 156 | 5 | 94 | 493 | 117 | 511 | 7.98e-162 | 470 |
MS.gene61209.t1 | MTR_5g022530 | 31.707 | 451 | 271 | 8 | 93 | 525 | 197 | 628 | 1.10e-55 | 198 |
MS.gene61209.t1 | MTR_8g006850 | 30.115 | 435 | 280 | 9 | 101 | 518 | 278 | 705 | 1.34e-51 | 188 |
MS.gene61209.t1 | MTR_7g081705 | 29.705 | 441 | 289 | 9 | 88 | 518 | 396 | 825 | 2.16e-49 | 183 |
MS.gene61209.t1 | MTR_1g112850 | 27.790 | 457 | 297 | 10 | 102 | 533 | 276 | 724 | 1.02e-44 | 169 |
MS.gene61209.t1 | MTR_2g048360 | 28.233 | 464 | 308 | 8 | 62 | 518 | 174 | 619 | 1.86e-40 | 155 |
MS.gene61209.t1 | MTR_8g091250 | 30.000 | 360 | 208 | 8 | 101 | 421 | 269 | 623 | 3.19e-40 | 155 |
MS.gene61209.t1 | MTR_4g127620 | 29.091 | 330 | 211 | 6 | 101 | 413 | 336 | 659 | 3.90e-36 | 143 |
MS.gene61209.t1 | MTR_5g098980 | 29.003 | 331 | 224 | 6 | 113 | 438 | 367 | 691 | 7.84e-33 | 134 |
MS.gene61209.t1 | MTR_3g088190 | 22.926 | 458 | 310 | 7 | 101 | 528 | 455 | 899 | 5.84e-29 | 122 |
MS.gene61209.t1 | MTR_2g036920 | 27.826 | 345 | 210 | 11 | 100 | 413 | 503 | 839 | 7.48e-28 | 119 |
MS.gene61209.t1 | MTR_2g036920 | 27.826 | 345 | 210 | 11 | 100 | 413 | 474 | 810 | 7.71e-28 | 119 |
MS.gene61209.t1 | MTR_3g078830 | 25.750 | 400 | 232 | 10 | 70 | 414 | 291 | 680 | 2.56e-27 | 117 |
MS.gene61209.t1 | MTR_3g096950 | 22.588 | 456 | 307 | 7 | 99 | 528 | 339 | 774 | 3.25e-27 | 116 |
MS.gene61209.t1 | MTR_3g115120 | 25.826 | 333 | 224 | 6 | 86 | 410 | 269 | 586 | 1.02e-26 | 115 |
MS.gene61209.t1 | MTR_5g087740 | 26.371 | 383 | 229 | 11 | 72 | 404 | 275 | 654 | 8.29e-26 | 112 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61209.t1 | AT1G52320 | 64.454 | 467 | 151 | 2 | 72 | 538 | 9 | 460 | 0.0 | 627 |
MS.gene61209.t1 | AT1G52320 | 64.454 | 467 | 151 | 2 | 72 | 538 | 9 | 460 | 0.0 | 627 |
MS.gene61209.t1 | AT1G52320 | 64.454 | 467 | 151 | 2 | 72 | 538 | 312 | 763 | 0.0 | 627 |
MS.gene61209.t1 | AT1G52320 | 64.454 | 467 | 151 | 2 | 72 | 538 | 335 | 786 | 0.0 | 627 |
MS.gene61209.t1 | AT1G52320 | 64.454 | 467 | 151 | 2 | 72 | 538 | 335 | 786 | 0.0 | 627 |
MS.gene61209.t1 | AT5G25590 | 60.470 | 468 | 181 | 2 | 77 | 540 | 303 | 770 | 0.0 | 549 |
MS.gene61209.t1 | AT3G51290 | 31.696 | 448 | 269 | 8 | 93 | 525 | 193 | 618 | 1.65e-59 | 208 |
MS.gene61209.t1 | AT3G51290 | 31.696 | 448 | 269 | 8 | 93 | 525 | 193 | 618 | 1.62e-58 | 208 |
MS.gene61209.t1 | AT1G02110 | 28.947 | 494 | 307 | 8 | 32 | 518 | 229 | 685 | 1.74e-55 | 198 |
MS.gene61209.t1 | AT3G51290 | 31.473 | 448 | 264 | 10 | 93 | 525 | 193 | 612 | 2.04e-54 | 194 |
MS.gene61209.t1 | AT3G60320 | 29.933 | 451 | 286 | 12 | 91 | 527 | 349 | 783 | 5.49e-45 | 170 |
MS.gene61209.t1 | AT4G39790 | 29.107 | 347 | 200 | 6 | 101 | 403 | 252 | 596 | 2.59e-36 | 143 |
MS.gene61209.t1 | AT2G34670 | 28.806 | 427 | 267 | 9 | 105 | 514 | 254 | 660 | 2.83e-34 | 137 |
MS.gene61209.t1 | AT1G21740 | 24.151 | 530 | 332 | 12 | 28 | 525 | 447 | 938 | 5.45e-34 | 137 |
MS.gene61209.t1 | AT4G35240 | 27.492 | 331 | 233 | 4 | 104 | 428 | 423 | 752 | 2.21e-33 | 135 |
MS.gene61209.t1 | AT4G35240 | 27.492 | 331 | 233 | 4 | 104 | 428 | 423 | 752 | 2.21e-33 | 135 |
MS.gene61209.t1 | AT4G35240 | 27.492 | 331 | 233 | 4 | 104 | 428 | 423 | 752 | 2.63e-33 | 135 |
MS.gene61209.t1 | AT4G35240 | 27.492 | 331 | 233 | 4 | 104 | 428 | 423 | 752 | 2.63e-33 | 135 |
MS.gene61209.t1 | AT1G77500 | 25.676 | 444 | 285 | 10 | 101 | 525 | 450 | 867 | 6.18e-33 | 134 |
MS.gene61209.t1 | AT2G27090 | 28.255 | 361 | 213 | 8 | 113 | 431 | 320 | 676 | 2.10e-32 | 132 |
MS.gene61209.t1 | AT2G27090 | 28.255 | 361 | 213 | 8 | 113 | 431 | 320 | 676 | 2.10e-32 | 132 |
MS.gene61209.t1 | AT2G17110 | 27.640 | 322 | 219 | 4 | 104 | 412 | 313 | 633 | 7.14e-31 | 127 |
MS.gene61209.t1 | AT1G20530 | 27.042 | 355 | 241 | 5 | 99 | 449 | 230 | 570 | 5.44e-28 | 118 |
MS.gene61209.t1 | AT2G19090 | 31.579 | 285 | 154 | 7 | 100 | 350 | 385 | 662 | 6.00e-26 | 113 |
MS.gene61209.t1 | AT4G30130 | 30.612 | 245 | 154 | 3 | 181 | 413 | 398 | 638 | 8.85e-25 | 109 |
MS.gene61209.t1 | AT4G30130 | 30.612 | 245 | 154 | 3 | 181 | 413 | 398 | 638 | 8.85e-25 | 109 |
MS.gene61209.t1 | AT2G34670 | 30.000 | 300 | 188 | 6 | 105 | 394 | 254 | 541 | 1.05e-22 | 102 |
MS.gene61209.t1 | AT5G54480 | 21.957 | 419 | 275 | 10 | 122 | 532 | 345 | 719 | 3.53e-16 | 82.4 |
MS.gene61209.t1 | AT4G30130 | 40.964 | 83 | 49 | 0 | 181 | 263 | 398 | 480 | 1.52e-13 | 73.6 |
MS.gene61209.t1 | AT4G30130 | 40.964 | 83 | 49 | 0 | 181 | 263 | 398 | 480 | 1.52e-13 | 73.6 |
Find 111 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCAAAGGAATACCTAATT+TGG | 0.134123 | 2.1:+3225254 | MS.gene61209:CDS |
ACATAATAATAGTGTTAATT+TGG | 0.152686 | 2.1:+3224500 | MS.gene61209:CDS |
CCCTATTGAGAGCAGTTTAA+AGG | 0.173187 | 2.1:+3226500 | MS.gene61209:CDS |
ATCGCATGCCAGAGCTCTTC+AGG | 0.228632 | 2.1:+3226949 | MS.gene61209:CDS |
ACCTCTATTATCAGCAAAAT+TGG | 0.239779 | 2.1:-3224622 | None:intergenic |
GCCTCTGGATCAACTTCTTC+TGG | 0.257510 | 2.1:-3226783 | None:intergenic |
TGAGCGAACTTATCAGTTAT+TGG | 0.286444 | 2.1:+3226380 | MS.gene61209:CDS |
CACTTGTCTGCTTAGGAGAT+TGG | 0.327106 | 2.1:-3226347 | None:intergenic |
ACATAAAGTCCCTAAGTAAT+TGG | 0.330244 | 2.1:+3226460 | MS.gene61209:CDS |
TCCTTTAAACTGCTCTCAAT+AGG | 0.339506 | 2.1:-3226501 | None:intergenic |
TCCTTCCCGTCATCCAAATT+AGG | 0.341107 | 2.1:-3225267 | None:intergenic |
GGTGTTGGTGTTGAGATTCC+TGG | 0.349593 | 2.1:+3224351 | MS.gene61209:CDS |
ATGGAGTCGCCGTTGCCATC+GGG | 0.360382 | 2.1:+3224417 | MS.gene61209:CDS |
CAATTGACTGACAGCTGCTT+TGG | 0.366439 | 2.1:-3225810 | None:intergenic |
CCATCAATGGAGGATATTGC+AGG | 0.367960 | 2.1:+3224210 | None:intergenic |
TATTGTAGATATGCAATCAT+TGG | 0.371247 | 2.1:+3225844 | MS.gene61209:CDS |
ACAATTGTTCATCGCGTAAT+CGG | 0.371613 | 2.1:-3225889 | None:intergenic |
TCCATCGAAGGAGGCGTAAC+CGG | 0.384107 | 2.1:-3224459 | None:intergenic |
CCTTTAAACTGCTCTCAATA+GGG | 0.384711 | 2.1:-3226500 | None:intergenic |
GAAACTTTATGATGAAGTTA+AGG | 0.388245 | 2.1:+3225356 | MS.gene61209:CDS |
CAAATTAGGTATTCCTTTGA+AGG | 0.388251 | 2.1:-3225253 | None:intergenic |
AAGCACCTCATGATGAGTTC+TGG | 0.393286 | 2.1:-3227043 | None:intergenic |
ACACCCATTCGAGCTGTAAC+AGG | 0.407056 | 2.1:-3224333 | None:intergenic |
TCAACAAGCTTAACAAGTCT+TGG | 0.408725 | 2.1:-3225914 | None:intergenic |
CCGCAAAACCAGGCAATTTG+AGG | 0.409368 | 2.1:+3226728 | MS.gene61209:CDS |
GAAAAGTTGCCTCACTAAAC+AGG | 0.416122 | 2.1:+3225747 | MS.gene61209:CDS |
AGCATACTGCAATGCCTAGT+AGG | 0.421867 | 2.1:+3224292 | MS.gene61209:CDS |
TCCATCACTTCCTCAGCCTC+AGG | 0.424272 | 2.1:-3224399 | None:intergenic |
GATGGAGTCGCCGTTGCCAT+CGG | 0.427077 | 2.1:+3224416 | MS.gene61209:CDS |
ACTTGTCTGCTTAGGAGATT+GGG | 0.429628 | 2.1:-3226346 | None:intergenic |
TCTTGGACAAGTTGCTAGCT+TGG | 0.429870 | 2.1:+3225328 | MS.gene61209:CDS |
CAAAGATGCTTGAGGCTACA+AGG | 0.437960 | 2.1:+3224586 | MS.gene61209:CDS |
GCTGTCCTAGCAAGCTCATC+GGG | 0.447333 | 2.1:-3226606 | None:intergenic |
CTTGGACAAGTTGCTAGCTT+GGG | 0.454835 | 2.1:+3225329 | MS.gene61209:CDS |
TTCTCTGTAACAATTTCATC+AGG | 0.455151 | 2.1:-3226822 | None:intergenic |
GATGCTAGTCAACAATCAAA+AGG | 0.457427 | 2.1:+3226434 | MS.gene61209:CDS |
AAAAGCAATGCCTCCAAGTA+AGG | 0.465352 | 2.1:+3226901 | MS.gene61209:CDS |
GCATTGGCATCTTCAGCCTC+TGG | 0.467662 | 2.1:-3226798 | None:intergenic |
AACAATTTCATCAGGAGCAT+TGG | 0.468857 | 2.1:-3226814 | None:intergenic |
GCCTAGTAGGGTTGGTATTG+TGG | 0.472234 | 2.1:+3224305 | MS.gene61209:CDS |
GAAGGCCAACATGGAGGAGG+AGG | 0.473560 | 2.1:+3224249 | MS.gene61209:CDS |
GAGCTTGCTAGGACAGCTAT+AGG | 0.486641 | 2.1:+3226612 | MS.gene61209:CDS |
GCCGGTTACGCCTCCTTCGA+TGG | 0.492483 | 2.1:+3224458 | MS.gene61209:CDS |
GGGTCATGCGAGTTATTACT+TGG | 0.495204 | 2.1:+3225223 | MS.gene61209:CDS |
TGATGTTCACTTGTCTGCTT+AGG | 0.496116 | 2.1:-3226354 | None:intergenic |
AAACCAGGCAATTTGAGGAT+TGG | 0.497907 | 2.1:+3226733 | MS.gene61209:CDS |
TGAAACTCATGCTACCATCT+TGG | 0.499419 | 2.1:+3225311 | MS.gene61209:CDS |
TCCACAATACCAACCCTACT+AGG | 0.499855 | 2.1:-3224306 | None:intergenic |
TGGTTGAACAAGTGAGAAAG+AGG | 0.502404 | 2.1:+3226853 | MS.gene61209:CDS |
CACATAGCCCTGAAGAGCTC+TGG | 0.505622 | 2.1:-3226957 | None:intergenic |
CCCTGAGGCTGAGGAAGTGA+TGG | 0.506788 | 2.1:+3224398 | MS.gene61209:CDS |
ATACCAATCCTCAAATTGCC+TGG | 0.513343 | 2.1:-3226736 | None:intergenic |
AGGTAATAATTCTGAAGCAT+TGG | 0.515033 | 2.1:+3225781 | MS.gene61209:CDS |
ACAGGCGGACTTCTAACTCT+TGG | 0.517783 | 2.1:-3226540 | None:intergenic |
AGCTAGCAACTTGTCCAAGA+TGG | 0.525210 | 2.1:-3225325 | None:intergenic |
TCAGCCTCAGGGATATGCTC+AGG | 0.525311 | 2.1:-3224387 | None:intergenic |
ATCTGAACATGAGAAGCAAT+CGG | 0.527639 | 2.1:+3226290 | MS.gene61209:CDS |
ATCTTCAACCCCGATGGCAA+CGG | 0.528306 | 2.1:-3224426 | None:intergenic |
AGAGCCTGTTACAGCTCGAA+TGG | 0.529220 | 2.1:+3224329 | MS.gene61209:CDS |
GGAACAAGCTTGAATGAAGA+AGG | 0.530337 | 2.1:+3224231 | MS.gene61209:CDS |
ATCCTCTTTGCCTCCATCGA+AGG | 0.532894 | 2.1:-3224471 | None:intergenic |
GTTAGAAGTCCGCCTGTACA+AGG | 0.533566 | 2.1:+3226546 | MS.gene61209:CDS |
AGGAACTTTCCCGCAAAACC+AGG | 0.533878 | 2.1:+3226718 | MS.gene61209:CDS |
TCGCATGCCAGAGCTCTTCA+GGG | 0.535307 | 2.1:+3226950 | MS.gene61209:CDS |
TGAGCATATCCCTGAGGCTG+AGG | 0.536065 | 2.1:+3224389 | MS.gene61209:CDS |
GAGAAAGAGGTTAGAACATG+AGG | 0.537272 | 2.1:+3226866 | MS.gene61209:CDS |
GTGTTGGTGTTGAGATTCCT+GGG | 0.540980 | 2.1:+3224352 | MS.gene61209:CDS |
GGCGGACTTCTAACTCTTGG+AGG | 0.543431 | 2.1:-3226537 | None:intergenic |
ACTTGGAATCGATCCTTCAA+AGG | 0.543491 | 2.1:+3225240 | MS.gene61209:CDS |
GAATACCTAATTTGGATGAC+GGG | 0.546029 | 2.1:+3225262 | MS.gene61209:CDS |
CTAGACGATCATGCCATGCA+TGG | 0.548697 | 2.1:-3226575 | None:intergenic |
GTCTGCTTAGGAGATTGGGA+AGG | 0.548931 | 2.1:-3226342 | None:intergenic |
TACAAGGTCTTCTCCATGCA+TGG | 0.552507 | 2.1:+3226562 | MS.gene61209:CDS |
GGAATACCTAATTTGGATGA+CGG | 0.552913 | 2.1:+3225261 | MS.gene61209:CDS |
ATGCTAGTCAACAATCAAAA+GGG | 0.553198 | 2.1:+3226435 | MS.gene61209:CDS |
GCATACTGCAATGCCTAGTA+GGG | 0.554472 | 2.1:+3224293 | MS.gene61209:CDS |
AACTTCCCGATGAGCTTGCT+AGG | 0.557024 | 2.1:+3226601 | MS.gene61209:CDS |
GGCTTCTGAGAGTGCTCATG+AGG | 0.559170 | 2.1:+3224560 | MS.gene61209:CDS |
GAAGAAGGCCAACATGGAGG+AGG | 0.560460 | 2.1:+3224246 | MS.gene61209:CDS |
TGAATGTTCTAAAATGTACA+TGG | 0.561377 | 2.1:+3226992 | MS.gene61209:CDS |
ACCTAATTTGGATGACGGGA+AGG | 0.566466 | 2.1:+3225266 | MS.gene61209:CDS |
TCTGCTTAGGAGATTGGGAA+GGG | 0.566753 | 2.1:-3226341 | None:intergenic |
GAGCCTGTTACAGCTCGAAT+GGG | 0.569273 | 2.1:+3224330 | MS.gene61209:CDS |
TAACTCCTCCTCCTCCATGT+TGG | 0.570608 | 2.1:-3224254 | None:intergenic |
TGCTTCATCTTCAACCCCGA+TGG | 0.575123 | 2.1:-3224432 | None:intergenic |
AGCTGTCCTAGCAAGCTCAT+CGG | 0.578087 | 2.1:-3226607 | None:intergenic |
CTCTTTGCCTCCATCGAAGG+AGG | 0.581200 | 2.1:-3224468 | None:intergenic |
GTTGAAGATGAAGCAGATGC+CGG | 0.584523 | 2.1:+3224440 | MS.gene61209:CDS |
GCATGGAGAAGACCTTGTAC+AGG | 0.585051 | 2.1:-3226558 | None:intergenic |
ACTGCAATGCCTAGTAGGGT+TGG | 0.586333 | 2.1:+3224297 | MS.gene61209:CDS |
GTTACAGCTCGAATGGGTGT+TGG | 0.592701 | 2.1:+3224336 | MS.gene61209:CDS |
GACACATTGATCACTCCGCA+AGG | 0.597277 | 2.1:+3225202 | MS.gene61209:CDS |
TGAGGTTTCAAAGATGCTTG+AGG | 0.598693 | 2.1:+3224578 | MS.gene61209:CDS |
CCATCACTTCCTCAGCCTCA+GGG | 0.605785 | 2.1:-3224398 | None:intergenic |
CTCCTTCGATGGAGGCAAAG+AGG | 0.606378 | 2.1:+3224469 | MS.gene61209:CDS |
TGTGACATTGCTGAGATCGT+TGG | 0.608493 | 2.1:+3226317 | MS.gene61209:CDS |
GGTATCACAAGTATATGCAA+AGG | 0.609073 | 2.1:+3226754 | MS.gene61209:CDS |
TTGAATGAAGAAGGCCAACA+TGG | 0.609334 | 2.1:+3224240 | MS.gene61209:CDS |
TCAGGCTCACGAATATGCCC+AGG | 0.609914 | 2.1:-3224369 | None:intergenic |
ACTGCAGGATGGCCTCTATG+TGG | 0.618136 | 2.1:+3226256 | MS.gene61209:intron |
TATTGGTCGTTGTTCAACAG+TGG | 0.619964 | 2.1:+3226397 | MS.gene61209:CDS |
GCCAGAAGAAGTTGATCCAG+AGG | 0.631302 | 2.1:+3226782 | MS.gene61209:CDS |
GGTTACGCCTCCTTCGATGG+AGG | 0.643550 | 2.1:+3224461 | MS.gene61209:CDS |
GAAATGTGAGGAAAGTCGAA+AGG | 0.658419 | 2.1:+3226698 | MS.gene61209:CDS |
CTGAGCCAGAACTCATCATG+AGG | 0.660589 | 2.1:+3227038 | MS.gene61209:CDS |
TGGAGAAGACCTTGTACAGG+CGG | 0.661230 | 2.1:-3226555 | None:intergenic |
TGGAGTCGCCGTTGCCATCG+GGG | 0.669096 | 2.1:+3224418 | MS.gene61209:CDS |
AATAACTCGCATGACCCTTG+CGG | 0.676668 | 2.1:-3225217 | None:intergenic |
ACACATTGATCACTCCGCAA+GGG | 0.685200 | 2.1:+3225203 | MS.gene61209:CDS |
AATGAAGAAGGCCAACATGG+AGG | 0.690535 | 2.1:+3224243 | MS.gene61209:CDS |
TGAGCCTGAGCATATCCCTG+AGG | 0.732046 | 2.1:+3224383 | MS.gene61209:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTCATATTACTTAACATT+TGG | - | chr2.1:3225395-3225414 | None:intergenic | 15.0% |
!! | ACATAATAATAGTGTTAATT+TGG | + | chr2.1:3224500-3224519 | MS.gene61209:CDS | 15.0% |
!! | TAAAAAATAACACACATTTA+AGG | - | chr2.1:3226006-3226025 | None:intergenic | 15.0% |
!! | TAAATCTAAATAGTTCTTTA+TGG | - | chr2.1:3225019-3225038 | None:intergenic | 15.0% |
!!! | TAATTTTAACCAATTACTTA+GGG | - | chr2.1:3226472-3226491 | None:intergenic | 15.0% |
!!! | TTAATTTTAACCAATTACTT+AGG | - | chr2.1:3226473-3226492 | None:intergenic | 15.0% |
!!! | TTTGTTTTTTTTCTTATTGA+AGG | + | chr2.1:3225180-3225199 | MS.gene61209:intron | 15.0% |
!! | AAGAAACATTTGAAAATATG+AGG | - | chr2.1:3226036-3226055 | None:intergenic | 20.0% |
!! | ATTAGACATGATTTATGAAA+TGG | + | chr2.1:3225050-3225069 | MS.gene61209:intron | 20.0% |
!! | TTAGACATGATTTATGAAAT+GGG | + | chr2.1:3225051-3225070 | MS.gene61209:intron | 20.0% |
!!! | ATTTTTTGGTTTTTTGGTAT+AGG | + | chr2.1:3225133-3225152 | MS.gene61209:intron | 20.0% |
!!! | CAAGTTATTTTTTGGTTTTT+TGG | + | chr2.1:3225127-3225146 | MS.gene61209:intron | 20.0% |
!!! | TAGTAACACAAGTTATTTTT+TGG | + | chr2.1:3225119-3225138 | MS.gene61209:intron | 20.0% |
! | GAAACTTTATGATGAAGTTA+AGG | + | chr2.1:3225356-3225375 | MS.gene61209:CDS | 25.0% |
! | TAGACATGATTTATGAAATG+GGG | + | chr2.1:3225052-3225071 | MS.gene61209:intron | 25.0% |
! | TATTGTAGATATGCAATCAT+TGG | + | chr2.1:3225844-3225863 | MS.gene61209:CDS | 25.0% |
!! | AAATAACTTGTGTTACTATG+AGG | - | chr2.1:3225117-3225136 | None:intergenic | 25.0% |
!! | AATAACTTGTGTTACTATGA+GGG | - | chr2.1:3225116-3225135 | None:intergenic | 25.0% |
!!! | AAGATGAGATGATTTTAAAG+AGG | + | chr2.1:3226676-3226695 | MS.gene61209:CDS | 25.0% |
!!! | CTAATTTTAAGACAGATTGA+GGG | + | chr2.1:3224754-3224773 | MS.gene61209:intron | 25.0% |
!!! | TAACATTTTTTTCCACATAG+AGG | - | chr2.1:3226271-3226290 | None:intergenic | 25.0% |
!!! | TAATTTTAAGACAGATTGAG+GGG | + | chr2.1:3224755-3224774 | MS.gene61209:intron | 25.0% |
!!! | TCTTGATGATCATTTTCTTA+AGG | + | chr2.1:3224539-3224558 | MS.gene61209:CDS | 25.0% |
!!! | TGAATGTTCTAAAATGTACA+TGG | + | chr2.1:3226992-3227011 | MS.gene61209:CDS | 25.0% |
ACATAAAGTCCCTAAGTAAT+TGG | + | chr2.1:3226460-3226479 | MS.gene61209:CDS | 30.0% | |
ACCTCTATTATCAGCAAAAT+TGG | - | chr2.1:3224625-3224644 | None:intergenic | 30.0% | |
ATGCTAGTCAACAATCAAAA+GGG | + | chr2.1:3226435-3226454 | MS.gene61209:CDS | 30.0% | |
ATTATACAAAACTCCTACCA+TGG | - | chr2.1:3225477-3225496 | None:intergenic | 30.0% | |
CAAATTAGGTATTCCTTTGA+AGG | - | chr2.1:3225256-3225275 | None:intergenic | 30.0% | |
CAAGTAAGGCAAAAAACTTT+GGG | + | chr2.1:3226915-3226934 | MS.gene61209:CDS | 30.0% | |
CTTCAAAGGAATACCTAATT+TGG | + | chr2.1:3225254-3225273 | MS.gene61209:CDS | 30.0% | |
TAAGTTGCATGATTCTTGTA+GGG | + | chr2.1:3226119-3226138 | MS.gene61209:intron | 30.0% | |
TATAGTAATGTTTCCCTCAT+GGG | + | chr2.1:3226066-3226085 | MS.gene61209:intron | 30.0% | |
TATTAGGGTGGATAAAATAG+AGG | + | chr2.1:3224953-3224972 | MS.gene61209:intron | 30.0% | |
TCCACTTCATATAATGTTGT+AGG | + | chr2.1:3225694-3225713 | MS.gene61209:intron | 30.0% | |
TTATAGTAATGTTTCCCTCA+TGG | + | chr2.1:3226065-3226084 | MS.gene61209:intron | 30.0% | |
TTCTCTGTAACAATTTCATC+AGG | - | chr2.1:3226825-3226844 | None:intergenic | 30.0% | |
TTGTATGACATAACCAAACA+AGG | - | chr2.1:3224908-3224927 | None:intergenic | 30.0% | |
TTTAAACAAGTATCCCATGA+GGG | - | chr2.1:3226082-3226101 | None:intergenic | 30.0% | |
! | ATAACTTGTGTTACTATGAG+GGG | - | chr2.1:3225115-3225134 | None:intergenic | 30.0% |
! | TCCAATTTTGCTGATAATAG+AGG | + | chr2.1:3224621-3224640 | MS.gene61209:CDS | 30.0% |
!! | AGGTAATAATTCTGAAGCAT+TGG | + | chr2.1:3225781-3225800 | MS.gene61209:CDS | 30.0% |
!! | AGTTCTAGAGTTAAAAGCAA+AGG | + | chr2.1:3224978-3224997 | MS.gene61209:intron | 30.0% |
!! | GATTTTAAAGAGGAAATGTG+AGG | + | chr2.1:3226686-3226705 | MS.gene61209:CDS | 30.0% |
!! | GGAGTTTTGTATAATCAAGT+TGG | + | chr2.1:3225482-3225501 | MS.gene61209:intron | 30.0% |
!!! | GCTAATTTTAAGACAGATTG+AGG | + | chr2.1:3224753-3224772 | MS.gene61209:intron | 30.0% |
AACTACAAGACTACTAGACA+TGG | - | chr2.1:3225979-3225998 | None:intergenic | 35.0% | |
ACAATTGTTCATCGCGTAAT+CGG | - | chr2.1:3225892-3225911 | None:intergenic | 35.0% | |
ACTACAAGACTACTAGACAT+GGG | - | chr2.1:3225978-3225997 | None:intergenic | 35.0% | |
ATCTGAACATGAGAAGCAAT+CGG | + | chr2.1:3226290-3226309 | MS.gene61209:CDS | 35.0% | |
CCAAGTAAGGCAAAAAACTT+TGG | + | chr2.1:3226914-3226933 | MS.gene61209:CDS | 35.0% | |
CCTTTAAACTGCTCTCAATA+GGG | - | chr2.1:3226503-3226522 | None:intergenic | 35.0% | |
CTAAACAGGCTGAAAAAAAG+AGG | + | chr2.1:3225761-3225780 | MS.gene61209:CDS | 35.0% | |
CTTCATATAATGTTGTAGGC+TGG | + | chr2.1:3225698-3225717 | MS.gene61209:intron | 35.0% | |
GAATACCTAATTTGGATGAC+GGG | + | chr2.1:3225262-3225281 | MS.gene61209:CDS | 35.0% | |
GATCTGGACTCAAGTATTAA+TGG | - | chr2.1:3226165-3226184 | None:intergenic | 35.0% | |
GATGCTAGTCAACAATCAAA+AGG | + | chr2.1:3226434-3226453 | MS.gene61209:CDS | 35.0% | |
GCCTACAACATTATATGAAG+TGG | - | chr2.1:3225698-3225717 | None:intergenic | 35.0% | |
GGAATACCTAATTTGGATGA+CGG | + | chr2.1:3225261-3225280 | MS.gene61209:CDS | 35.0% | |
GGTATCACAAGTATATGCAA+AGG | + | chr2.1:3226754-3226773 | MS.gene61209:CDS | 35.0% | |
GTAAGTTGCATGATTCTTGT+AGG | + | chr2.1:3226118-3226137 | MS.gene61209:intron | 35.0% | |
GTTTAAACAAGTATCCCATG+AGG | - | chr2.1:3226083-3226102 | None:intergenic | 35.0% | |
TCAACAAGCTTAACAAGTCT+TGG | - | chr2.1:3225917-3225936 | None:intergenic | 35.0% | |
TCCTTTAAACTGCTCTCAAT+AGG | - | chr2.1:3226504-3226523 | None:intergenic | 35.0% | |
TGAGCGAACTTATCAGTTAT+TGG | + | chr2.1:3226380-3226399 | MS.gene61209:CDS | 35.0% | |
TTAATACTTGAGTCCAGATC+TGG | + | chr2.1:3226165-3226184 | MS.gene61209:intron | 35.0% | |
! | AACAATTTCATCAGGAGCAT+TGG | - | chr2.1:3226817-3226836 | None:intergenic | 35.0% |
! | ACAATTTTCTTACAGAGTCG+TGG | + | chr2.1:3225446-3225465 | MS.gene61209:intron | 35.0% |
! | ATTTTGCCTTTTCACAAGAG+TGG | + | chr2.1:3224862-3224881 | MS.gene61209:intron | 35.0% |
! | TCATTGAATGTTGCCTTGTT+TGG | + | chr2.1:3224892-3224911 | MS.gene61209:intron | 35.0% |
! | TGTTACAGAGAAGCAGTTTT+TGG | + | chr2.1:3226833-3226852 | MS.gene61209:CDS | 35.0% |
! | TTAGTGAGGCAACTTTTCTT+TGG | - | chr2.1:3225745-3225764 | None:intergenic | 35.0% |
!! | GATAATAGAGGTACTCTACT+GGG | + | chr2.1:3224633-3224652 | MS.gene61209:intron | 35.0% |
!! | GCTTCTCTGCTAATTTTGAT+AGG | + | chr2.1:3226221-3226240 | MS.gene61209:intron | 35.0% |
!! | TGATAATAGAGGTACTCTAC+TGG | + | chr2.1:3224632-3224651 | MS.gene61209:intron | 35.0% |
!! | TTTTTCTTTTGACTGCAGGA+TGG | + | chr2.1:3226245-3226264 | MS.gene61209:intron | 35.0% |
!!! | AAGTTTTTTGCCTTACTTGG+AGG | - | chr2.1:3226914-3226933 | None:intergenic | 35.0% |
!!! | AGGTTTTTTCTTTTGACTGC+AGG | + | chr2.1:3226241-3226260 | MS.gene61209:intron | 35.0% |
!!! | CCAAAGTTTTTTGCCTTACT+TGG | - | chr2.1:3226917-3226936 | None:intergenic | 35.0% |
!!! | TTTTTTCAGCCTGTTTAGTG+AGG | - | chr2.1:3225759-3225778 | None:intergenic | 35.0% |
AAAAGCAATGCCTCCAAGTA+AGG | + | chr2.1:3226901-3226920 | MS.gene61209:CDS | 40.0% | |
AAACCAGGCAATTTGAGGAT+TGG | + | chr2.1:3226733-3226752 | MS.gene61209:CDS | 40.0% | |
ACTTGGAATCGATCCTTCAA+AGG | + | chr2.1:3225240-3225259 | MS.gene61209:CDS | 40.0% | |
ACTTGTCTGCTTAGGAGATT+GGG | - | chr2.1:3226349-3226368 | None:intergenic | 40.0% | |
ATACCAATCCTCAAATTGCC+TGG | - | chr2.1:3226739-3226758 | None:intergenic | 40.0% | |
ATGAGCAGGCACTAGTTATT+AGG | + | chr2.1:3224937-3224956 | MS.gene61209:intron | 40.0% | |
ATTGTGCATTCATCCAGATC+TGG | - | chr2.1:3226181-3226200 | None:intergenic | 40.0% | |
CCCTATTGAGAGCAGTTTAA+AGG | + | chr2.1:3226500-3226519 | MS.gene61209:CDS | 40.0% | |
GAAAAGTTGCCTCACTAAAC+AGG | + | chr2.1:3225747-3225766 | MS.gene61209:CDS | 40.0% | |
GAAATGTGAGGAAAGTCGAA+AGG | + | chr2.1:3226698-3226717 | MS.gene61209:CDS | 40.0% | |
GAGAAAGAGGTTAGAACATG+AGG | + | chr2.1:3226866-3226885 | MS.gene61209:CDS | 40.0% | |
GATACACACAAACACACACA+TGG | - | chr2.1:3225650-3225669 | None:intergenic | 40.0% | |
GGAACAAGCTTGAATGAAGA+AGG | + | chr2.1:3224231-3224250 | MS.gene61209:CDS | 40.0% | |
TACAAAGAGAAGACATGAGC+AGG | + | chr2.1:3224923-3224942 | MS.gene61209:intron | 40.0% | |
TAGAGCAGTAGGAAAATGAC+TGG | - | chr2.1:3225596-3225615 | None:intergenic | 40.0% | |
TATTGGTCGTTGTTCAACAG+TGG | + | chr2.1:3226397-3226416 | MS.gene61209:CDS | 40.0% | |
TGAAACTCATGCTACCATCT+TGG | + | chr2.1:3225311-3225330 | MS.gene61209:CDS | 40.0% | |
TGAGCAGGCACTAGTTATTA+GGG | + | chr2.1:3224938-3224957 | MS.gene61209:intron | 40.0% | |
TGAGGTTTCAAAGATGCTTG+AGG | + | chr2.1:3224578-3224597 | MS.gene61209:CDS | 40.0% | |
TGATGTTCACTTGTCTGCTT+AGG | - | chr2.1:3226357-3226376 | None:intergenic | 40.0% | |
TGGTTGAACAAGTGAGAAAG+AGG | + | chr2.1:3226853-3226872 | MS.gene61209:CDS | 40.0% | |
TTAAGACAGATTGAGGGGAA+TGG | + | chr2.1:3224760-3224779 | MS.gene61209:intron | 40.0% | |
TTGAATGAAGAAGGCCAACA+TGG | + | chr2.1:3224240-3224259 | MS.gene61209:CDS | 40.0% | |
AATAACTCGCATGACCCTTG+CGG | - | chr2.1:3225220-3225239 | None:intergenic | 45.0% | |
AATGAAGAAGGCCAACATGG+AGG | + | chr2.1:3224243-3224262 | MS.gene61209:CDS | 45.0% | |
ACAAAACTCCTACCATGGCA+TGG | - | chr2.1:3225472-3225491 | None:intergenic | 45.0% | |
ACACATTGATCACTCCGCAA+GGG | + | chr2.1:3225203-3225222 | MS.gene61209:CDS | 45.0% | |
AGCATACTGCAATGCCTAGT+AGG | + | chr2.1:3224292-3224311 | MS.gene61209:CDS | 45.0% | |
AGCTAGCAACTTGTCCAAGA+TGG | - | chr2.1:3225328-3225347 | None:intergenic | 45.0% | |
CAAAGATGCTTGAGGCTACA+AGG | + | chr2.1:3224586-3224605 | MS.gene61209:CDS | 45.0% | |
CAATTGACTGACAGCTGCTT+TGG | - | chr2.1:3225813-3225832 | None:intergenic | 45.0% | |
CACTTGTCTGCTTAGGAGAT+TGG | - | chr2.1:3226350-3226369 | None:intergenic | 45.0% | |
GCAGAGAAGCTTGTACTGTA+TGG | - | chr2.1:3226211-3226230 | None:intergenic | 45.0% | |
GCATACTGCAATGCCTAGTA+GGG | + | chr2.1:3224293-3224312 | MS.gene61209:CDS | 45.0% | |
GGGTCATGCGAGTTATTACT+TGG | + | chr2.1:3225223-3225242 | MS.gene61209:CDS | 45.0% | |
GTCTAGCCACTCTTGTGAAA+AGG | - | chr2.1:3224871-3224890 | None:intergenic | 45.0% | |
GTTGAAGATGAAGCAGATGC+CGG | + | chr2.1:3224440-3224459 | MS.gene61209:CDS | 45.0% | |
GTTGCACTAGATAGAGACTC+TGG | + | chr2.1:3224655-3224674 | MS.gene61209:intron | 45.0% | |
TACAAGGTCTTCTCCATGCA+TGG | + | chr2.1:3226562-3226581 | MS.gene61209:CDS | 45.0% | |
TCAAGCGAAGATAGAGCAGT+AGG | - | chr2.1:3225607-3225626 | None:intergenic | 45.0% | |
TCCACAATACCAACCCTACT+AGG | - | chr2.1:3224309-3224328 | None:intergenic | 45.0% | |
TCCTTCCCGTCATCCAAATT+AGG | - | chr2.1:3225270-3225289 | None:intergenic | 45.0% | |
TCTGCTTAGGAGATTGGGAA+GGG | - | chr2.1:3226344-3226363 | None:intergenic | 45.0% | |
TCTTGGACAAGTTGCTAGCT+TGG | + | chr2.1:3225328-3225347 | MS.gene61209:CDS | 45.0% | |
TGTGACATTGCTGAGATCGT+TGG | + | chr2.1:3226317-3226336 | MS.gene61209:CDS | 45.0% | |
! | CTTGGACAAGTTGCTAGCTT+GGG | + | chr2.1:3225329-3225348 | MS.gene61209:CDS | 45.0% |
!! | ACCTAATTTGGATGACGGGA+AGG | + | chr2.1:3225266-3225285 | MS.gene61209:CDS | 45.0% |
!! | GTGTTGGTGTTGAGATTCCT+GGG | + | chr2.1:3224352-3224371 | MS.gene61209:CDS | 45.0% |
!!! | CCTCAAATTGCCTGGTTTTG+CGG | - | chr2.1:3226731-3226750 | None:intergenic | 45.0% |
!!! | CTCAAATTGCCTGGTTTTGC+GGG | - | chr2.1:3226730-3226749 | None:intergenic | 45.0% |
!! | TTCATATTAAATAATATTTA+TGG | + | chr2.1:3225157-3225176 | MS.gene61209:intron | 5.0% |
ACACCCATTCGAGCTGTAAC+AGG | - | chr2.1:3224336-3224355 | None:intergenic | 50.0% | |
ACTGCAATGCCTAGTAGGGT+TGG | + | chr2.1:3224297-3224316 | MS.gene61209:CDS | 50.0% | |
AGAGCCTGTTACAGCTCGAA+TGG | + | chr2.1:3224329-3224348 | MS.gene61209:CDS | 50.0% | |
AGCTGTCCTAGCAAGCTCAT+CGG | - | chr2.1:3226610-3226629 | None:intergenic | 50.0% | |
AGGAACTTTCCCGCAAAACC+AGG | + | chr2.1:3226718-3226737 | MS.gene61209:CDS | 50.0% | |
ATCCTCTTTGCCTCCATCGA+AGG | - | chr2.1:3224474-3224493 | None:intergenic | 50.0% | |
ATCTTCAACCCCGATGGCAA+CGG | - | chr2.1:3224429-3224448 | None:intergenic | 50.0% | |
CCGCAAAACCAGGCAATTTG+AGG | + | chr2.1:3226728-3226747 | MS.gene61209:CDS | 50.0% | |
CTAGACGATCATGCCATGCA+TGG | - | chr2.1:3226578-3226597 | None:intergenic | 50.0% | |
GACACATTGATCACTCCGCA+AGG | + | chr2.1:3225202-3225221 | MS.gene61209:CDS | 50.0% | |
GAGCCTGTTACAGCTCGAAT+GGG | + | chr2.1:3224330-3224349 | MS.gene61209:CDS | 50.0% | |
GCAGGCACTAGTTATTAGGG+TGG | + | chr2.1:3224941-3224960 | MS.gene61209:intron | 50.0% | |
GCATGGAGAAGACCTTGTAC+AGG | - | chr2.1:3226561-3226580 | None:intergenic | 50.0% | |
GCCTCTGGATCAACTTCTTC+TGG | - | chr2.1:3226786-3226805 | None:intergenic | 50.0% | |
GTCTGCTTAGGAGATTGGGA+AGG | - | chr2.1:3226345-3226364 | None:intergenic | 50.0% | |
GTTACAGCTCGAATGGGTGT+TGG | + | chr2.1:3224336-3224355 | MS.gene61209:CDS | 50.0% | |
GTTAGAAGTCCGCCTGTACA+AGG | + | chr2.1:3226546-3226565 | MS.gene61209:CDS | 50.0% | |
TAACTCCTCCTCCTCCATGT+TGG | - | chr2.1:3224257-3224276 | None:intergenic | 50.0% | |
TGCTTCATCTTCAACCCCGA+TGG | - | chr2.1:3224435-3224454 | None:intergenic | 50.0% | |
TGGAGAAGACCTTGTACAGG+CGG | - | chr2.1:3226558-3226577 | None:intergenic | 50.0% | |
! | AACTTCCCGATGAGCTTGCT+AGG | + | chr2.1:3226601-3226620 | MS.gene61209:CDS | 50.0% |
! | ACAGGCGGACTTCTAACTCT+TGG | - | chr2.1:3226543-3226562 | None:intergenic | 50.0% |
! | GCCAGAAGAAGTTGATCCAG+AGG | + | chr2.1:3226782-3226801 | MS.gene61209:CDS | 50.0% |
!! | GAGCTTGCTAGGACAGCTAT+AGG | + | chr2.1:3226612-3226631 | MS.gene61209:CDS | 50.0% |
!! | GCCTAGTAGGGTTGGTATTG+TGG | + | chr2.1:3224305-3224324 | MS.gene61209:CDS | 50.0% |
!! | GGTGTTGGTGTTGAGATTCC+TGG | + | chr2.1:3224351-3224370 | MS.gene61209:CDS | 50.0% |
ACTGCAGGATGGCCTCTATG+TGG | + | chr2.1:3226256-3226275 | MS.gene61209:intron | 55.0% | |
ATCGCATGCCAGAGCTCTTC+AGG | + | chr2.1:3226949-3226968 | MS.gene61209:CDS | 55.0% | |
CACATAGCCCTGAAGAGCTC+TGG | - | chr2.1:3226960-3226979 | None:intergenic | 55.0% | |
CCATCACTTCCTCAGCCTCA+GGG | - | chr2.1:3224401-3224420 | None:intergenic | 55.0% | |
CTCCTTCGATGGAGGCAAAG+AGG | + | chr2.1:3224469-3224488 | MS.gene61209:CDS | 55.0% | |
CTCTTTGCCTCCATCGAAGG+AGG | - | chr2.1:3224471-3224490 | None:intergenic | 55.0% | |
GAAGAAGGCCAACATGGAGG+AGG | + | chr2.1:3224246-3224265 | MS.gene61209:CDS | 55.0% | |
GCTGTCCTAGCAAGCTCATC+GGG | - | chr2.1:3226609-3226628 | None:intergenic | 55.0% | |
TCAGCCTCAGGGATATGCTC+AGG | - | chr2.1:3224390-3224409 | None:intergenic | 55.0% | |
TCAGGCTCACGAATATGCCC+AGG | - | chr2.1:3224372-3224391 | None:intergenic | 55.0% | |
TCCATCACTTCCTCAGCCTC+AGG | - | chr2.1:3224402-3224421 | None:intergenic | 55.0% | |
TCGCATGCCAGAGCTCTTCA+GGG | + | chr2.1:3226950-3226969 | MS.gene61209:CDS | 55.0% | |
TGAGCATATCCCTGAGGCTG+AGG | + | chr2.1:3224389-3224408 | MS.gene61209:CDS | 55.0% | |
TGAGCCTGAGCATATCCCTG+AGG | + | chr2.1:3224383-3224402 | MS.gene61209:CDS | 55.0% | |
! | GCATTGGCATCTTCAGCCTC+TGG | - | chr2.1:3226801-3226820 | None:intergenic | 55.0% |
! | GGCGGACTTCTAACTCTTGG+AGG | - | chr2.1:3226540-3226559 | None:intergenic | 55.0% |
! | TCCATCGAAGGAGGCGTAAC+CGG | - | chr2.1:3224462-3224481 | None:intergenic | 55.0% |
!! | GGCTTCTGAGAGTGCTCATG+AGG | + | chr2.1:3224560-3224579 | MS.gene61209:CDS | 55.0% |
ACAGAGTCGTGGCCATGCCA+TGG | + | chr2.1:3225457-3225476 | MS.gene61209:intron | 60.0% | |
AGTCGTGGCCATGCCATGGT+AGG | + | chr2.1:3225461-3225480 | MS.gene61209:intron | 60.0% | |
ATGGAGTCGCCGTTGCCATC+GGG | + | chr2.1:3224417-3224436 | MS.gene61209:CDS | 60.0% | |
CCCTGAGGCTGAGGAAGTGA+TGG | + | chr2.1:3224398-3224417 | MS.gene61209:CDS | 60.0% | |
GAAGGCCAACATGGAGGAGG+AGG | + | chr2.1:3224249-3224268 | MS.gene61209:CDS | 60.0% | |
GATGGAGTCGCCGTTGCCAT+CGG | + | chr2.1:3224416-3224435 | MS.gene61209:CDS | 60.0% | |
GGTTACGCCTCCTTCGATGG+AGG | + | chr2.1:3224461-3224480 | MS.gene61209:CDS | 60.0% | |
GCCGGTTACGCCTCCTTCGA+TGG | + | chr2.1:3224458-3224477 | MS.gene61209:CDS | 65.0% | |
TGGAGTCGCCGTTGCCATCG+GGG | + | chr2.1:3224418-3224437 | MS.gene61209:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 3224216 | 3227058 | 3224216 | ID=MS.gene61209 |
chr2.1 | mRNA | 3224216 | 3227058 | 3224216 | ID=MS.gene61209.t1;Parent=MS.gene61209 |
chr2.1 | exon | 3224216 | 3224642 | 3224216 | ID=MS.gene61209.t1.exon1;Parent=MS.gene61209.t1 |
chr2.1 | CDS | 3224216 | 3224642 | 3224216 | ID=cds.MS.gene61209.t1;Parent=MS.gene61209.t1 |
chr2.1 | exon | 3225202 | 3225377 | 3225202 | ID=MS.gene61209.t1.exon2;Parent=MS.gene61209.t1 |
chr2.1 | CDS | 3225202 | 3225377 | 3225202 | ID=cds.MS.gene61209.t1;Parent=MS.gene61209.t1 |
chr2.1 | exon | 3225716 | 3225939 | 3225716 | ID=MS.gene61209.t1.exon3;Parent=MS.gene61209.t1 |
chr2.1 | CDS | 3225716 | 3225939 | 3225716 | ID=cds.MS.gene61209.t1;Parent=MS.gene61209.t1 |
chr2.1 | exon | 3226263 | 3227058 | 3226263 | ID=MS.gene61209.t1.exon4;Parent=MS.gene61209.t1 |
chr2.1 | CDS | 3226263 | 3227058 | 3226263 | ID=cds.MS.gene61209.t1;Parent=MS.gene61209.t1 |
Gene Sequence |
Protein sequence |