AlfalfaGEDB | MS.gene61245

M. sativa cultivar XinJiangDaYe / MS.gene61245

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61245.t1	XP_013457554.1	95.2	290	14	0	6	295	70	359	9.40E-128	466.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61245.t1	A0A072V0D3	95.2	290	14	0	6	295	70	359	6.8e-128	466.5

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05188	MS.gene61245	0.80194	7.10E-49	-1.69E-46
MS.gene051975	MS.gene61245	0.814037	1.89E-51	-1.69E-46
MS.gene055513	MS.gene61245	0.821469	3.97E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61245.t1	MTR_4g099070	96.907	291	9	0	5	295	69	359	0.0	570
MS.gene61245.t1	MTR_4g099070	96.564	291	9	1	5	295	69	358	0.0	564

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61245.t1	AT1G32730	42.177	294	140	6	5	295	61	327	1.44e-59	193

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Find 46 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCCACTAACTAGAA+AGG	0.540503	8.2:+23060393	MS.gene61245:CDS
AACAATGAGGTAATGATCCC+TGG	0.455916	8.2:+23060702	MS.gene61245:CDS
AAGCTCAAGTCTGCTGTAGA+TGG	0.465375	8.2:+23060810	MS.gene61245:CDS
AATCTTCGAATAAGAGAAAG+AGG	0.496068	8.2:+23060868	MS.gene61245:CDS
AATTAACAAAGCCCGAAGTG+AGG	0.646396	8.2:+23060929	MS.gene61245:CDS
ACAATGAGGTAATGATCCCT+GGG	0.596258	8.2:+23060703	MS.gene61245:CDS
ACTCGTTACCAAAATTGGTT+GGG	0.456983	8.2:+23061093	MS.gene61245:CDS
ACTGCAAATCCTCCTCACTT+CGG	0.516635	8.2:-23060941	None:intergenic
ACTTGTAACTTACATTGACG+GGG	0.642253	8.2:-23055496	None:intergenic
AGTGGGGCAGCACCAGAAGA+TGG	0.528171	8.2:-23055450	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	23052701	23061193	23052701	ID=MS.gene61245
chr8.2	mRNA	23052701	23061193	23052701	ID=MS.gene61245.t1;Parent=MS.gene61245
chr8.2	exon	23052701	23052716	23052701	ID=MS.gene61245.t1.exon1;Parent=MS.gene61245.t1
chr8.2	CDS	23052701	23052716	23052701	ID=cds.MS.gene61245.t1;Parent=MS.gene61245.t1
chr8.2	exon	23055418	23055505	23055418	ID=MS.gene61245.t1.exon2;Parent=MS.gene61245.t1
chr8.2	CDS	23055418	23055505	23055418	ID=cds.MS.gene61245.t1;Parent=MS.gene61245.t1
chr8.2	exon	23060312	23060414	23060312	ID=MS.gene61245.t1.exon3;Parent=MS.gene61245.t1
chr8.2	CDS	23060312	23060414	23060312	ID=cds.MS.gene61245.t1;Parent=MS.gene61245.t1
chr8.2	exon	23060513	23061193	23060513	ID=MS.gene61245.t1.exon4;Parent=MS.gene61245.t1
chr8.2	CDS	23060513	23061193	23060513	ID=cds.MS.gene61245.t1;Parent=MS.gene61245.t1

Gene Sequence

>MS.gene61245

ATGGCAGCAAAACAAGGTGACGTCGGGAGGTCGAATGGACCTATTTTTATTATCGGAGTGGGGTCTCCAATTTCATAGGGACGGCCTTGCATGTCATCCAAATAAAAACCAGGTCTTGTTAACTGATGGCCCCGTGACACAAGTTAAGGAGCTAAAAATAGAAAGAAAATACAAGTTTTACATCGAAAATATCACTTTTTAAAATTTTAAAGAGTATAATACACAATTTTCATGACAATATTTTCTTTTATAATTCCTTAACAAGTGTTCATTAGACACTTGTTAACATTTCCCATAAAATATGTTGTGTATCTCAATTGTTATCTGAACTTGTAATCTTTGTTGGGATAAATAATTTATTTTCTTGATCAAAAAAAAAAAAAATTATTTTCAACTTTTAGCACGAACACTTATCATAATAAGCATTTATGTTTAAAAATAACCATTGATTATGTATTACTTTAGTCAAAATAATCTTCAACGTTAAAATGTTCCATTAATTATTTCATATCATGTCCTTAAGACCTTAACATCCAAATCACTATTATCCTAGAAGTAAATTAAGAAGTTACCACGTCAGTTTAGGGTTAAAACACAAACGGGAACTAGAGTTCCTTCCTAGCCTCTGAACTCACAAACCCCCAGCTTCTTAAGAACCGAAACCCAACGCTCGCACGCGGTTAAGCAAAGGGTTCGTACTTCGTAAAACCAATTCCCACCCATTTTTCCTTCAAATTTTTCTCTTCCCAAAAAGATTAACCCTACAATTTCATCAAAATAAAAATAAAAATTACCCCCATTAATTTTTACTATTTTTCCTTCTTTCTTCGAATCAACTGATTCAACTCTCTCATTTCGCCGTTGAAACGAAAACGAAAATTGTTGTTCTTTATGCGTGTTTATGGCGACGGCACCGAGCAACAATTCAACGGCGAAAGTCGGAACCCTAGGTCTAACCAATTCACCGGTGGCTTCATCGGCGCCGAAATCTCAACGCGGGCAGAACAAACCTAAGTGCAAACAGTGTGGCAATGTTGCTCGTTCTAGGTCTAACTCCTTTTTCTTTCAAACTTTGATTTTACTTTACTCGTTTATCATTTTCAATTCTGATTTTTTATTTTATTTTCAGGTGTCCTTATGAGCAATGCAAGAGTTGCTGTTCCAAGAATCAAAATCCTTGTCCGATTCATGGTCAGTTTGGCTCTTTTTGATGTGTTTTTGTTTTCAATTCTATATTTTTTTTTTGAATCCTTGATGGCGACTTGATTAACTTGGTTTTGATGCTGAAATGTTGAAATTTAATGGAAGTTCAAATACTAGATATATGTTTGAGAATCTAGAGTACGTCGTCAGTGTAAAATTATTTTACCGTTACGTTAGGTTAAATTTCATTGTTTTGCCACGTCATACCACTCGCGTAAATGTGTTTTGAACTTGATCGTATGAAGTGGCAAGATAGAGAATTTTTATTGGCTGTCTGTTTAAAACGTATTTACATCGACTGTGCATCTCCGTTTAACTCGATGTTTGAACACTAACGAAAGTTTCTAGACGATTACTTTTGCTATAATTGCTTTGCACACATATTTCTTACAGTGTTAGTACAATTGAAAATAAACCATTGCACAATACAAATTATTTATTATTACGAAACTGAAGCTAGGGGGACCATAGGGTTAATTTGCTTTCTGCCACTATCTGGGGTTAGCTACTTTGGTTTGTTAGAGGCAAAAGGAGGAGACTTCATTGTTGTCAGAATCCTGATCAGAATCGTGAAAACCCACAATTTTGCGATTTCACTCACCCTTATCGATCCAGATCGTGAATTGAATCCTGAGTTGAGTAAAATCCCTGTGAAATAACATGAAAACATGAAATCAGGTGAAATCGTGTGATTCCATACGATTCTAGCTTTGAGTTGTTTATGTTTAAGCTTTGTGACTCGATTGTTTTATGTTTAGGATTTGAGATTTGGTTGTTTTATCCTTGTTTATGATTTGAAACTTTGAGTGGTTTATATACAATATATATTCAGTATTATTTTTGTTTTGGTAGGATCTTTCAAATTTGGTTGCGATTTTATGTTTTATGATCTTGCTATCCCCTCTAGATCCTACAAAATTAATTGAGTAGAATACTTCGATCTTGTTTTCGATTTTATGTTTTATGATCTTGCTATCCCCTTTCGATCTGATACAATATCTCGATTTTGACATCCTTACTTTCATGAGTATTTGGGTTACAAAGAACTTAAATCTTGATATCGATTAAAAAGATATTGTATTTTCCTGTTTCTTTTGGATAGAAGTGAAACATATGATTGAAATAAAAATGAAACATATTTTCCTTTTTTATTCCAGAGTAATAGTAATTAAGATACTGCCTTTCTGGTCTAGAGCTTTCTAACATGGCTAGCTTATATATTTTGAAATTGGAAAAATGCCCTCTGAAGGGTGTATCGGCTCTTGAATTCTTTTATTTGACGGTATTTTAAAAACATCCCCACTTTAGAGGAGCTTTATCCACAAAGACTTGGTGTGAGTTACGAAAATGTAATGTAACACAAAAAAGATGCAATTATTTCAGTGAATCGTCAATCCTTTTGCAAGATTTACAATATCTGTTACTTTCTATTACTCATGTTGATATTTCCCATACTTGAAAGATCCTAACAACTTTTCATACCCCCTCTTTTTCATGTCATATGGTGAATGTAGTGTTAAAAGCCAGTACAATTCCTGACAACACTCCATCTTCTGGTGCTGCCCCACTTGATCGAAAATCCTTTGAACCACCCCCGTCAATGTAAGTTACAAGTATCAACACCCTACATTTATATCATATTCATTATGTTAGTTTTATATATCAAACATGTTATTCATTATGTTAGTTTTATATATCAAACATGTTAATCTTTATTGAAAAATAAATTTGGTTGGAAACTTTGTTTTTTGCGGAATAGCATTGCTATTCTTCTTTTGAAAGCTTGGCTGGACTTTGTACTTTGTAGTGCGGTACCTACAGTTATCTTGTATATACCTCACATAAGTCATGCTATTTGCTACAATATTGGCCAAAGTTTCAAAGGTTTATTTGTCTCAAACTCTACGGCAAGAGGTAGCAGGCGCGCACACACATTTTAATTTTTTGTATTATTTGATTTGGTTGATATCTTTGTATTATTAAAATAGAGTCATAATATGCAGTTTTTGTAAACAGATATACCAGTCACTAAAATTTTGGAATTTAGGGACCATTTATGGTTTATGTAATACGAGTGTAAGCGTAACTCCATGAGGCTGGGAGCTTTAATCTCAATCAACACTATACAATACATGCGATAAATTTAGAGTCAGATGAGTCTAACTACCTATGCAATAGAATTTAGCAATCTCTAATTGATTAATCAGAACTAACAGTTTGAAGCCCAATGCTTAGCTAACCTCTTGTGATTGATACAATGTACTCCAATTTCATTCTCCTGTCATCTCCCTTGTTAAACTCAGGGTGTTTTGAGGCATAGTCATCACCCTGAGTTGGGCTCTAAGTCAAGGGCTTGGTGAGATTATTTGCTACTTGGTCCAGTGCTGAAATAGTTATGACGATCAGCTACTTCGGTAGAATATTTTCTGACAAAATATAGATCAAGTTCCACAACAACACTTCAATTATGACAAAAAACAGTAGTGGAGAAAGGCAACTGTAACTCGGATAAAAGAGACCATCCACACTAGTTTTGCTGCAGTGAGAGAGCAACATTCCTGTACTCTGCCTTGGCATCAAGTCTGGCCACATTTGGTTGGCTGGTTGCTTGCTAGACCACCAATAAATCAAGTTATTGTAAAGAAAAATGCATGTGCAGCCTGTCATCAATGTCTGAAGTCTAATCAACACCACTGAATGCCTACAAGCTGATGGGCGTAGACTGCAGAGGCAAAATGTGGCTATAAAAGAAGCCAATGAGTAGCAATGCCTTGTATTACCGACCCCCATAACTGACCAACCTTGTTTACTGAAAACCAAATTTCAGGTCTAGTAATGGTTTGCATATTGAAGAACTCCCACTACAAACCTGTAAAGCTGAAGATCCATTCATGGGAGAAATCCAAATCTTGATACTTTAAAGTTAGTAACATGGGTTTCCAATCTGCCATAACATTCTTTCTAGGAGGTCTTTGATTTATGTAGTTTGAATCACTAACAGGGACCCGAGGACGACCTCTGGACTTATAGCCCACAAATAGTCAATATGCACATTTATTATTAAGTTTAGAATCATAGATTGAGATTCGAATTAGCAAATCATAATGATTAGCATTTATTGCACACACGATTGTAAAGAGGGGGAGTTGGTCTGATTTTGACATAGGCATCAGAGCAGGTTATGAGCATATGACCACTGGGGTTCATTGCAGCCGCTGGCGGCGACAAGCTATAAAGTTTCTCTTACGTCGTTACTATTTGCTGCTGCTGGTTATTGTCACAGTGAGGGAAAGAATTGAAATGCTATTGACACAAAATTGAGAGTGAACTTTGTTGATCGTGTGTGTTACTCCTTTATATGATTTTTGAAAAAACCCTAAAATTTCATTTAAACATACCGGGTGTTGTCACCTGACCTGACCCATTTTTTCAGCAATTCAACATGTGCGATCTTAACAGCAGTACCATGGTAGTAAAAATCATGAGCCAATGTGTGAGATCGTGTGGTTATGCGATCTTCATAGGTCTTGTCGAGATCGCGCATGGGAAGAATCACAAATTGGCTGGAAGCGGCTGGGATCGTGGGTCAGCCATTTTTTCTGGTCATGTTGCACAGAGCCTTGTTTTGTGGGTCAGGACCACGACCCGGTTCTTAAAACGACACCGTCATTAAAGAAAACCCTAAAATAACATGTCAAAAACACATGAAAGGCTGAGTCAGTCCGTTTCTAGCCTACTGCACATTAATTTGTCGCTTTGCTTTTTTGTTTTATATGCTTTGCTTTCTACTAAAGGGGGCCTCGGTAAAGTTGTTGTCATGTGACTGAAAGATCACGGGTTCAAGTCCTGGAAACAACCCCTTGTGTAAAATTAGGGTAAGGCTACATACAATACACCAAATGGTGGGACCCTTTACCGGACCCTGCGTATGCTGGGGCTTTAGTGCACTGGCCAACCCTTTACGCTTTGCTTTCCACTTTGTTCTACAACTTTTTTTTTTTTTTTTGCAATAATGAATAATTGCCAATGTGATTTAAAAAAGTCAAACACATACATAATAATAACAATAAAAGAAAATATCTTATGCTATACTAGTTTTTAATTAAGTATACAGTTTATTTGTTTATTAATTAAGTAACTGTGGTGTTCTGAAGTGTTATTTTTATGCATATACATGAAATTATATGTCAATTTGTGAATCTGGTAGGATCTTACGATCCTTGTTATGATTCATCAGTTTACGATCTTGCAACTCCTTCCTGATCCTATGTAGGATCTCAATCTTTACATCTTTAGCAGTACAGTACCCATACTAAGCCATACTTTTTGTACTGAAGCGTTTCCTCTCTATACATAAAGAGGAGTACCCGCACACGGTACTTTGCGATTTCCAATGTACTGATTCTTTGGAGATTAATATTGACGATGTTCAATTATTTATTAGTGACATACATCACTCTGGTGAGTGGCCTGTCAATCTTCTCGCCACTCAACTCCCTACTGATATCTTGCAAGAAATGTGGTGTCTTTGTTAACTCATGTGGATTGTGGATAGCACTCCTTCCTGTTTACATGACTAAAAGAGCCACACATGGCTAAGTAAGCGCAATACAACTCCTGTGCCTATTTCCCATAACTGGTCTTGGATCTGGACTTATGATAGTCTTCCCACAAATGTTTTTAGATCCTCACGACTTGTCTCCCATTACACTTCTTGTTGTAGATGTGGTGCAGCTCAAGAGACAACTTTACATGATTTGTAAGTTTGTATGGTTGATGGGCGTATCCGGTGCAGTTTCTGTTTCACTTAGCCCCAAAATTTCCTTGCCAATGATGTCATTGGATAAAGTACAATGCTGCATAAACTATTTTTAATTCCTTGCTGGTTGGTTTGGAAATCTCACAATGGGAGTTTTTTTTTCCCGAAAGGACCGGCTTGTTGTTAATGACATTAAGGCTCTTTTTGATTCCACCTTAAGTGTTTGGTTTCCAACAACAGAACGACATGAGGTTTGTTTCTTGGCAGCCTTATGAGAATATTGTGAAACTTGATGTGGATGGGAGCTCATTTTGGAAACCGTAGCTATTGGGTTATGGCTGTCTCATCATAACCTCCTCTAGTAATTGGATCATTGATGTCTCTAGTAGCCATGACGGATCATTGATGTCTCTAGTAGCCATGACTTCGATTCAAATATTAAATGCTGAATTACATGCAATTGCTTGTGGTTTGGTTTTTTGACTTGGAGCGCTGTTATGGATGCCATTTGTGAATCTAATAGCAAGTCTACTCTCCATCATTTAGCATATTAGAAGGCATGACGGGAAATACTTGTGTGACATTAATGTCACGGTGACATTAAATCTGGACCACACATTGGGTGACATTAGATGTGTTGTGTGGTCCAGATGCAATGGCAATGATAATGTGTGGTTCAGATTTAATGTCACCGTGACATTAATGTCACCAAAGTGCCACCCAAGGCATGACTGACTCCTAGAACCTGTGTTTTCAGCACACCTTGTTGGAAGGTAACCATTGTGCAGATTGGCTTACCAAGCTCTGGGCCAGCTTGGATTATGGAATGCAAATTTGGAGTCTTTGTTCCCCCGCTCTGTCTATTTCTCTTCTAGCAGATGCATTAGGAGTTTAGATAGTTTGATTGTAGTCCTAGTCTCCTCTGTTCTTTTCCAAATGATAAAAAGAGACCTTACAAAAATTATTGTTCCTGATACAAATGGAGATTGGGATGGTCTCAGTTATAAAAAGTTGGCTTCTGGATTCAATGTTCTTATTAGATAAAATCTTAAACATAGCTAGTTGCAAGATCTGGAAAAGCCGAGTTTCAAACCAGACTCTTTCTGTATGTGAAGTTGAATGTTGGAAACAATTACAAGATTCGAGGTTTTGATAAATAAATAAAAAAACTAAGCATATAGGGATGTCCCTGTATATATAAAACCTTGTTGATTATGTCACTGGGGTTAAGAATGTTGCAGTAGCATTAAATTTGTTGGTAACCTTTATTACTCTTTCAGTTTTATCCTTTAAATTACTGAAACTCGTCAACTTACATTATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATCTCCAATGTTTAAATAAGAGAGGAATAATTTATCTTTCTCATGCAACACTTATTGCTAAGCGGCTTACTAATGTAAAATAATCAAGTGTACTCGGGTAAACAAATAATAAATGGAATGAAATTTTTGAAAGGGGTTTTATGCAATTTTTGAACTTCCAGTTTGCTCTGGTAGTATTTATTTCTAATTCTTCGATTGATTCAATTATATAATCAGATTTCAGATTCTTATATTTTTCCCTGAGGATCATTTTGTTTTTTATATCAGAAGTGCTGGTAGAGCTGCGTCACTTCGACAACTTTCCAATAGTTTTGCTCAGTTCAATAATTTGCATCTTTCACTTCGATCAAAGAAGCCACTAACTAGAAAGGTACATGCACAATATATAAATTAAGTTTGATCGAGTATAAAACTTGTTCTAGCAAGCTGTATGTTGCTTGGAAGTAATGGCACTGTGTCTGATTACAGGATGCTGCAGCTATCAATGAATGGAGGTTTTCCAAGTTAAAGGAATACAAGGAGCGAAATGTTGAAGCGGAAAATGAAGCCTTTGACCGATACATGCAAAATGTAGATTTGCTGGAAGAAGTATTATCTGTGAAGCATTCAGATGAGGATGTGTCTTCTGCATCGGAGGCTAATCCTACCTCGACAGAGAACAATGAGGTAATGATCCCTGGGTTAAAATTGCAACTAAGGTCAAACTCGACGAGAAGTGATGGTGTTAGAATAAGAATAAAAAAAACTGTAGATGATGGATTGAAGAAGCTCAAGTCTGCTGTAGATGGTGACAGCAATAATGAACAAATCGATGAAGTTAGTGAATCTTCGAATAAGAGAAAGAGGACCGAAAAGTTATCAGCTATAAGTGATCTTCTGGACAAAATTAACAAAGCCCGAAGTGAGGAGGATTTGCAGTCATGCTTGGAGGTGAAGTTACAGCTTTTCAATTCAGACGAAGACTCTGCTATGGTGCAACACACAGACAATGAAATGCATCAGAATCAAACTGCTGAAGGCGATGTTGTACCAGCAAAAGAATTGGATTACTCGTTACCAAAATTGGTTGGGTCCTCAGAAATTGATCAAGAAACTCTCAACATCATTGACAAACACTTTTCTTCTCTCGAGAATGTAGAGCAGTTATGA

Protein sequence

>MS.gene61245.t1

MAAKQVLKASTIPDNTPSSGAAPLDRKSFEPPPSISAGRAASLRQLSNSFAQFNNLHLSLRSKKPLTRKDAAAINEWRFSKLKEYKERNVEAENEAFDRYMQNVDLLEEVLSVKHSDEDVSSASEANPTSTENNEVMIPGLKLQLRSNSTRSDGVRIRIKKTVDDGLKKLKSAVDGDSNNEQIDEVSESSNKRKRTEKLSAISDLLDKINKARSEEDLQSCLEVKLQLFNSDEDSAMVQHTDNEMHQNQTAEGDVVPAKELDYSLPKLVGSSEIDQETLNIIDKHFSSLENVEQL