Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61273.t1 | XP_013457593.1 | 97.2 | 251 | 7 | 0 | 1 | 251 | 1 | 251 | 1.90E-145 | 525 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61273.t1 | O23547 | 59.2 | 240 | 95 | 3 | 12 | 250 | 12 | 249 | 1.7e-86 | 320.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61273.t1 | A0A072UP56 | 97.2 | 251 | 7 | 0 | 1 | 251 | 1 | 251 | 1.4e-145 | 525.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61273 | MS.gene003384 | PPI |
| MS.gene61273 | MS.gene28934 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61273.t1 | MTR_4g099370 | 97.211 | 251 | 7 | 0 | 1 | 251 | 1 | 251 | 0.0 | 510 |
| MS.gene61273.t1 | MTR_5g013440 | 72.510 | 251 | 69 | 0 | 1 | 251 | 2 | 252 | 6.24e-146 | 408 |
| MS.gene61273.t1 | MTR_4g099400 | 69.231 | 169 | 52 | 0 | 81 | 249 | 10 | 178 | 3.34e-86 | 254 |
| MS.gene61273.t1 | MTR_4g098930 | 41.434 | 251 | 139 | 2 | 9 | 251 | 3 | 253 | 3.57e-66 | 206 |
| MS.gene61273.t1 | MTR_4g075790 | 37.838 | 222 | 134 | 3 | 31 | 251 | 26 | 244 | 7.26e-52 | 169 |
| MS.gene61273.t1 | MTR_4g075790 | 37.059 | 170 | 106 | 1 | 81 | 250 | 9 | 177 | 3.11e-38 | 132 |
| MS.gene61273.t1 | MTR_0809s0010 | 32.090 | 268 | 154 | 8 | 1 | 244 | 1 | 264 | 1.81e-33 | 122 |
| MS.gene61273.t1 | MTR_4g028640 | 30.736 | 231 | 150 | 7 | 25 | 250 | 39 | 264 | 4.27e-28 | 108 |
| MS.gene61273.t1 | MTR_0118s0070 | 32.468 | 231 | 135 | 9 | 33 | 250 | 53 | 275 | 3.48e-27 | 106 |
| MS.gene61273.t1 | MTR_2g090265 | 28.194 | 227 | 148 | 7 | 33 | 251 | 38 | 257 | 2.13e-26 | 103 |
| MS.gene61273.t1 | MTR_2g090270 | 27.273 | 253 | 164 | 8 | 12 | 251 | 14 | 259 | 3.86e-26 | 102 |
| MS.gene61273.t1 | MTR_0122s0020 | 26.374 | 273 | 169 | 10 | 1 | 250 | 1 | 264 | 5.81e-23 | 94.7 |
| MS.gene61273.t1 | MTR_3g094040 | 28.112 | 249 | 156 | 10 | 11 | 244 | 8 | 248 | 6.53e-22 | 91.7 |
| MS.gene61273.t1 | MTR_4g099380 | 48.649 | 111 | 36 | 4 | 112 | 218 | 1 | 94 | 3.37e-21 | 90.1 |
| MS.gene61273.t1 | MTR_3g094060 | 28.700 | 223 | 144 | 8 | 30 | 244 | 33 | 248 | 1.10e-20 | 88.2 |
| MS.gene61273.t1 | MTR_3g435430 | 27.197 | 239 | 159 | 8 | 17 | 247 | 14 | 245 | 2.97e-20 | 87.0 |
| MS.gene61273.t1 | MTR_7g013140 | 27.686 | 242 | 156 | 9 | 14 | 245 | 14 | 246 | 3.35e-20 | 87.0 |
| MS.gene61273.t1 | MTR_7g111010 | 26.255 | 259 | 163 | 10 | 11 | 250 | 5 | 254 | 5.11e-20 | 86.7 |
| MS.gene61273.t1 | MTR_7g011060 | 29.339 | 242 | 155 | 10 | 9 | 244 | 4 | 235 | 1.35e-19 | 85.1 |
| MS.gene61273.t1 | MTR_7g013120 | 27.686 | 242 | 158 | 8 | 14 | 245 | 14 | 248 | 2.17e-19 | 84.7 |
| MS.gene61273.t1 | MTR_4g102450 | 28.405 | 257 | 162 | 9 | 9 | 251 | 14 | 262 | 2.34e-19 | 84.7 |
| MS.gene61273.t1 | MTR_3g466760 | 25.714 | 245 | 167 | 8 | 9 | 245 | 19 | 256 | 5.96e-19 | 83.6 |
| MS.gene61273.t1 | MTR_3g466790 | 25.714 | 245 | 167 | 8 | 9 | 245 | 13 | 250 | 9.12e-19 | 83.2 |
| MS.gene61273.t1 | MTR_4g081950 | 26.953 | 256 | 168 | 9 | 1 | 244 | 30 | 278 | 1.43e-18 | 83.2 |
| MS.gene61273.t1 | MTR_7g013150 | 26.829 | 246 | 160 | 9 | 11 | 244 | 10 | 247 | 2.03e-18 | 82.0 |
| MS.gene61273.t1 | MTR_1g085460 | 25.506 | 247 | 165 | 8 | 16 | 250 | 18 | 257 | 2.16e-18 | 82.0 |
| MS.gene61273.t1 | MTR_8g058990 | 27.016 | 248 | 163 | 9 | 8 | 245 | 9 | 248 | 3.34e-18 | 81.6 |
| MS.gene61273.t1 | MTR_5g075320 | 27.027 | 222 | 147 | 8 | 32 | 245 | 33 | 247 | 6.72e-18 | 80.5 |
| MS.gene61273.t1 | MTR_4g124340 | 30.172 | 232 | 136 | 11 | 27 | 244 | 60 | 279 | 9.32e-18 | 80.9 |
| MS.gene61273.t1 | MTR_7g110990 | 27.004 | 237 | 150 | 9 | 28 | 250 | 12 | 239 | 1.37e-17 | 79.7 |
| MS.gene61273.t1 | MTR_0122s0020 | 29.612 | 206 | 117 | 8 | 1 | 184 | 1 | 200 | 1.85e-17 | 78.6 |
| MS.gene61273.t1 | MTR_8g464350 | 26.991 | 226 | 148 | 8 | 30 | 246 | 33 | 250 | 3.38e-17 | 79.0 |
| MS.gene61273.t1 | MTR_5g041700 | 28.000 | 225 | 147 | 8 | 28 | 244 | 25 | 242 | 1.50e-16 | 77.0 |
| MS.gene61273.t1 | MTR_7g061720 | 26.407 | 231 | 153 | 8 | 24 | 244 | 28 | 251 | 9.32e-16 | 74.7 |
| MS.gene61273.t1 | MTR_5g011210 | 25.106 | 235 | 161 | 5 | 26 | 251 | 35 | 263 | 7.60e-15 | 72.4 |
| MS.gene61273.t1 | MTR_1g026020 | 22.530 | 253 | 176 | 10 | 9 | 250 | 12 | 255 | 2.39e-13 | 68.2 |
| MS.gene61273.t1 | MTR_4g063975 | 27.128 | 188 | 120 | 8 | 24 | 200 | 28 | 209 | 1.78e-12 | 65.9 |
| MS.gene61273.t1 | MTR_6g012520 | 29.091 | 220 | 143 | 9 | 28 | 244 | 28 | 237 | 7.34e-12 | 63.9 |
| MS.gene61273.t1 | MTR_2g090255 | 26.984 | 252 | 162 | 10 | 9 | 245 | 4 | 248 | 7.39e-12 | 63.9 |
| MS.gene61273.t1 | MTR_0040s0140 | 25.203 | 246 | 166 | 9 | 11 | 245 | 14 | 252 | 4.25e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61273.t1 | AT4G17030 | 57.371 | 251 | 104 | 3 | 1 | 250 | 1 | 249 | 4.83e-108 | 312 |
| MS.gene61273.t1 | AT3G45970 | 36.058 | 208 | 130 | 3 | 47 | 251 | 15 | 222 | 2.32e-44 | 149 |
| MS.gene61273.t1 | AT4G38400 | 38.095 | 189 | 116 | 1 | 64 | 251 | 61 | 249 | 1.31e-43 | 148 |
| MS.gene61273.t1 | AT3G45960 | 35.450 | 189 | 121 | 1 | 64 | 251 | 12 | 200 | 1.07e-41 | 142 |
| MS.gene61273.t1 | AT3G45970 | 36.842 | 190 | 118 | 2 | 64 | 251 | 60 | 249 | 1.51e-41 | 143 |
| MS.gene61273.t1 | AT3G45960 | 35.450 | 189 | 121 | 1 | 64 | 251 | 60 | 248 | 3.96e-41 | 142 |
| MS.gene61273.t1 | AT1G65680 | 33.750 | 240 | 139 | 9 | 23 | 250 | 42 | 273 | 9.46e-31 | 115 |
| MS.gene61273.t1 | AT4G28250 | 29.259 | 270 | 163 | 11 | 1 | 251 | 1 | 261 | 8.66e-28 | 107 |
| MS.gene61273.t1 | AT2G40610 | 29.032 | 248 | 162 | 7 | 5 | 244 | 7 | 248 | 8.92e-25 | 99.4 |
| MS.gene61273.t1 | AT4G28250 | 28.519 | 270 | 159 | 12 | 1 | 251 | 1 | 255 | 1.03e-23 | 96.7 |
| MS.gene61273.t1 | AT2G20750 | 26.740 | 273 | 173 | 10 | 1 | 251 | 1 | 268 | 1.47e-23 | 96.3 |
| MS.gene61273.t1 | AT1G65681 | 29.302 | 215 | 140 | 6 | 43 | 250 | 13 | 222 | 4.67e-21 | 88.6 |
| MS.gene61273.t1 | AT2G45110 | 28.077 | 260 | 161 | 9 | 9 | 250 | 8 | 259 | 1.29e-20 | 88.2 |
| MS.gene61273.t1 | AT5G39290 | 27.391 | 230 | 148 | 9 | 30 | 250 | 60 | 279 | 5.09e-20 | 87.0 |
| MS.gene61273.t1 | AT4G01630 | 24.904 | 261 | 179 | 8 | 1 | 250 | 1 | 255 | 1.14e-19 | 85.5 |
| MS.gene61273.t1 | AT2G03090 | 27.668 | 253 | 163 | 10 | 5 | 244 | 2 | 247 | 2.09e-19 | 84.7 |
| MS.gene61273.t1 | AT5G56320 | 27.668 | 253 | 167 | 9 | 1 | 244 | 1 | 246 | 2.66e-19 | 84.7 |
| MS.gene61273.t1 | AT5G56320 | 27.668 | 253 | 167 | 9 | 1 | 244 | 1 | 246 | 2.66e-19 | 84.7 |
| MS.gene61273.t1 | AT3G60570 | 27.309 | 249 | 156 | 10 | 15 | 250 | 21 | 257 | 7.21e-19 | 83.6 |
| MS.gene61273.t1 | AT5G39270 | 26.957 | 230 | 149 | 9 | 30 | 250 | 60 | 279 | 8.63e-19 | 83.6 |
| MS.gene61273.t1 | AT5G56320 | 27.668 | 253 | 167 | 9 | 1 | 244 | 1 | 246 | 8.99e-19 | 84.0 |
| MS.gene61273.t1 | AT5G05290 | 27.477 | 222 | 147 | 7 | 32 | 245 | 36 | 251 | 1.33e-18 | 82.8 |
| MS.gene61273.t1 | AT4G28250 | 32.683 | 205 | 107 | 10 | 1 | 187 | 1 | 192 | 3.23e-18 | 80.9 |
| MS.gene61273.t1 | AT4G28250 | 32.843 | 204 | 106 | 10 | 1 | 186 | 1 | 191 | 5.96e-18 | 80.1 |
| MS.gene61273.t1 | AT2G39700 | 26.407 | 231 | 153 | 8 | 24 | 244 | 27 | 250 | 6.26e-17 | 78.2 |
| MS.gene61273.t1 | AT2G20750 | 30.000 | 210 | 117 | 9 | 1 | 186 | 1 | 204 | 6.31e-17 | 77.4 |
| MS.gene61273.t1 | AT5G39280 | 26.087 | 230 | 157 | 8 | 27 | 250 | 53 | 275 | 7.91e-17 | 78.2 |
| MS.gene61273.t1 | AT5G39310 | 26.180 | 233 | 158 | 8 | 25 | 250 | 87 | 312 | 7.92e-17 | 78.6 |
| MS.gene61273.t1 | AT5G39300 | 26.087 | 230 | 157 | 8 | 27 | 250 | 54 | 276 | 1.23e-16 | 77.8 |
| MS.gene61273.t1 | AT5G02260 | 27.632 | 228 | 148 | 8 | 28 | 245 | 32 | 252 | 7.30e-16 | 75.1 |
| MS.gene61273.t1 | AT1G12560 | 23.810 | 231 | 156 | 6 | 31 | 250 | 40 | 261 | 1.18e-15 | 74.7 |
| MS.gene61273.t1 | AT3G29030 | 29.680 | 219 | 144 | 8 | 28 | 244 | 38 | 248 | 1.52e-15 | 74.3 |
| MS.gene61273.t1 | AT1G26770 | 25.000 | 248 | 168 | 9 | 8 | 244 | 3 | 243 | 4.16e-15 | 73.2 |
| MS.gene61273.t1 | AT1G26770 | 25.000 | 248 | 168 | 9 | 8 | 244 | 13 | 253 | 4.65e-15 | 73.2 |
| MS.gene61273.t1 | AT1G69530 | 26.407 | 231 | 154 | 9 | 28 | 250 | 27 | 249 | 5.53e-15 | 72.8 |
| MS.gene61273.t1 | AT1G69530 | 26.407 | 231 | 154 | 9 | 28 | 250 | 27 | 249 | 5.53e-15 | 72.8 |
| MS.gene61273.t1 | AT1G69530 | 25.778 | 225 | 152 | 8 | 28 | 244 | 27 | 244 | 9.05e-15 | 72.4 |
| MS.gene61273.t1 | AT2G37640 | 26.383 | 235 | 150 | 10 | 24 | 245 | 32 | 256 | 1.34e-14 | 71.6 |
| MS.gene61273.t1 | AT1G69530 | 27.072 | 181 | 119 | 6 | 28 | 200 | 27 | 202 | 5.38e-14 | 69.3 |
| MS.gene61273.t1 | AT1G69530 | 27.072 | 181 | 119 | 6 | 28 | 200 | 27 | 202 | 6.70e-14 | 69.7 |
| MS.gene61273.t1 | AT3G15370 | 25.681 | 257 | 152 | 10 | 11 | 246 | 8 | 246 | 4.31e-12 | 64.7 |
Find 63 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCCACTGAGGAGGGTTTA+TGG | 0.247415 | 8.2:-22814927 | MS.gene61273:CDS |
| TCCACGAGGCTACGCGAAAT+TGG | 0.256911 | 8.2:-22815495 | MS.gene61273:CDS |
| GCTTGTGGCTTTGGAGAATA+TGG | 0.263125 | 8.2:-22815813 | MS.gene61273:CDS |
| CCACAATACTGCGATGAAAA+TGG | 0.266801 | 8.2:-22815575 | MS.gene61273:CDS |
| TCCTCAGTGGCCTCCATTCT+TGG | 0.275497 | 8.2:+22814937 | None:intergenic |
| GTGGAAATGCAGGTGTTTAT+TGG | 0.317224 | 8.2:-22814845 | MS.gene61273:CDS |
| ATCACTAGGGATAGCATTCT+TGG | 0.323642 | 8.2:+22814815 | None:intergenic |
| TGGCTGCGGTGCATGCTATC+AGG | 0.344368 | 8.2:-22815733 | MS.gene61273:intron |
| CTTGGAGTCCCATAGCAATC+TGG | 0.347216 | 8.2:+22816316 | None:intergenic |
| ACCACAACAGCAAAGTAATA+AGG | 0.362326 | 8.2:+22815347 | None:intergenic |
| TCTGCAGAGCTATTCAAATA+TGG | 0.394107 | 8.2:-22815455 | MS.gene61273:CDS |
| TCCTTATTACTTTGCTGTTG+TGG | 0.402642 | 8.2:-22815348 | MS.gene61273:CDS |
| CTCAAGTTTATTTCACCACT+TGG | 0.406130 | 8.2:+22814879 | None:intergenic |
| TGGAAATGCAGGTGTTTATT+GGG | 0.410965 | 8.2:-22814844 | MS.gene61273:CDS |
| TATTTCACCACTTGGAGGAT+TGG | 0.431234 | 8.2:+22814887 | None:intergenic |
| ATCCCTAGTGATTGGAAGGC+TGG | 0.435906 | 8.2:-22814804 | MS.gene61273:CDS |
| CCACGAGGCTACGCGAAATT+GGG | 0.444079 | 8.2:-22815494 | MS.gene61273:CDS |
| GTGAATGATGGCAATGTTGC+TGG | 0.451506 | 8.2:-22815783 | MS.gene61273:CDS |
| GACTCCAGAGCAACATATTA+CGG | 0.456356 | 8.2:-22816343 | MS.gene61273:CDS |
| TGGAAGAATGGCACTGGCTG+CGG | 0.456676 | 8.2:-22815747 | MS.gene61273:CDS |
| CACCTGCATTTCCACTCACT+TGG | 0.460702 | 8.2:+22814853 | None:intergenic |
| TGCAGGAAGATTGCCAAGAA+TGG | 0.461897 | 8.2:-22814950 | MS.gene61273:intron |
| GTTGTGGTTCTCTATGTAGA+TGG | 0.464390 | 8.2:-22815332 | MS.gene61273:CDS |
| TGGAGCTGCATATGACACTA+TGG | 0.473430 | 8.2:-22814784 | MS.gene61273:CDS |
| AGAATGCTATCCCTAGTGAT+TGG | 0.481085 | 8.2:-22814812 | MS.gene61273:CDS |
| GTACAGTGGCTATAACATAA+TGG | 0.497067 | 8.2:-22815396 | MS.gene61273:CDS |
| ACCGTAGTGGTAACAGACTA+TGG | 0.499521 | 8.2:-22815548 | MS.gene61273:CDS |
| TTGGAGTCCCATAGCAATCT+GGG | 0.508697 | 8.2:+22816317 | None:intergenic |
| AAGTTTATTTCACCACTTGG+AGG | 0.511098 | 8.2:+22814882 | None:intergenic |
| CCCAATTTCGCGTAGCCTCG+TGG | 0.523724 | 8.2:+22815494 | None:intergenic |
| TTCCAAGTGAGTGGAAATGC+AGG | 0.526709 | 8.2:-22814855 | MS.gene61273:CDS |
| TACGGTAGCCCAGATTGCTA+TGG | 0.539732 | 8.2:-22816325 | MS.gene61273:CDS |
| TGTTGCTCTGGAGTCAGTAA+AGG | 0.544094 | 8.2:+22816351 | None:intergenic |
| TGCTATCCCTAGTGATTGGA+AGG | 0.547215 | 8.2:-22814808 | MS.gene61273:CDS |
| GCTACCGTAATATGTTGCTC+TGG | 0.555933 | 8.2:+22816339 | None:intergenic |
| TATGGAAGAACAGTGAATGA+TGG | 0.557044 | 8.2:-22815795 | MS.gene61273:CDS |
| TTATAGCCACTGTACATACA+TGG | 0.559188 | 8.2:+22815404 | None:intergenic |
| AGAATGGAGGCCACTGAGGA+GGG | 0.569852 | 8.2:-22814934 | MS.gene61273:CDS |
| ACCATAGTCTGTTACCACTA+CGG | 0.574425 | 8.2:+22815547 | None:intergenic |
| TTGCTGGTGTGTCTAAGCTA+TGG | 0.574596 | 8.2:-22815767 | MS.gene61273:CDS |
| AAGCTATGGAAGAATGGCAC+TGG | 0.579404 | 8.2:-22815753 | MS.gene61273:CDS |
| GCTCCAGCCTTCCAATCACT+AGG | 0.580531 | 8.2:+22814801 | None:intergenic |
| AAGAATGGAGGCCACTGAGG+AGG | 0.587098 | 8.2:-22814935 | MS.gene61273:CDS |
| TGATACAAACAAGGCCAAGT+TGG | 0.587186 | 8.2:+22816410 | None:intergenic |
| GTGTCTAAGCTATGGAAGAA+TGG | 0.587930 | 8.2:-22815759 | MS.gene61273:CDS |
| ACGGTAGCCCAGATTGCTAT+GGG | 0.590086 | 8.2:-22816324 | MS.gene61273:CDS |
| AACTTGAGGTTCCAAGTGAG+TGG | 0.592662 | 8.2:-22814864 | MS.gene61273:CDS |
| GACTATGCCAATCCTCCAAG+TGG | 0.622471 | 8.2:-22814894 | MS.gene61273:CDS |
| CTCCAGCCTTCCAATCACTA+GGG | 0.624095 | 8.2:+22814802 | None:intergenic |
| GTGGTAACAGACTATGGTGA+AGG | 0.629740 | 8.2:-22815542 | MS.gene61273:CDS |
| CAATGCTGTTGAGATGTGGC+AGG | 0.636272 | 8.2:-22815297 | MS.gene61273:intron |
| AGGAAGATTGCCAAGAATGG+AGG | 0.637762 | 8.2:-22814947 | MS.gene61273:CDS |
| GCCAAGAATGGAGGCCACTG+AGG | 0.654040 | 8.2:-22814938 | MS.gene61273:CDS |
| GTCAGTAAAGGAGTCTTGTG+AGG | 0.658578 | 8.2:+22816363 | None:intergenic |
| TATAGCCACTGTACATACAT+GGG | 0.665165 | 8.2:+22815405 | None:intergenic |
| TGAAAATGGAGCAACCGTAG+TGG | 0.671092 | 8.2:-22815561 | MS.gene61273:CDS |
| TCTTGTGAGGTACATAGCTG+AGG | 0.675312 | 8.2:+22816376 | None:intergenic |
| ATGTCAATGCTGTTGAGATG+TGG | 0.679068 | 8.2:-22815301 | MS.gene61273:CDS |
| AGAGTCCCATGTATGTACAG+TGG | 0.691229 | 8.2:-22815410 | MS.gene61273:CDS |
| CAAGTGGTGAAATAAACTTG+AGG | 0.692736 | 8.2:-22814878 | MS.gene61273:CDS |
| ACTCCATAAACCCTCCTCAG+TGG | 0.707415 | 8.2:+22814924 | None:intergenic |
| AGAGCAGTATGATACAAACA+AGG | 0.723610 | 8.2:+22816401 | None:intergenic |
| GACTTCATAATGAGTCCACG+AGG | 0.774042 | 8.2:-22815509 | MS.gene61273:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAATTTACTATTATTAA+TGG | + | chr8.2:22815556-22815575 | None:intergenic | 10.0% |
| !!! | TAAATATTTTGTTACAATTA+TGG | + | chr8.2:22815503-22815522 | None:intergenic | 10.0% |
| !! | AATTGAAATATATACTTTAG+GGG | - | chr8.2:22815362-22815381 | MS.gene61273:CDS | 15.0% |
| !! | AGAAATTAAATATCAAGTTT+AGG | + | chr8.2:22814928-22814947 | None:intergenic | 15.0% |
| !! | GAATTGAAATATATACTTTA+GGG | - | chr8.2:22815361-22815380 | MS.gene61273:CDS | 15.0% |
| !! | GTAAATTTACTAACTATAAA+TGG | - | chr8.2:22815565-22815584 | MS.gene61273:CDS | 15.0% |
| !! | TGAATTGAAATATATACTTT+AGG | - | chr8.2:22815360-22815379 | MS.gene61273:CDS | 15.0% |
| !! | ATTGAAATATATACTTTAGG+GGG | - | chr8.2:22815363-22815382 | MS.gene61273:CDS | 20.0% |
| !! | CTATATACATTGCATTTAAT+TGG | - | chr8.2:22815940-22815959 | MS.gene61273:intron | 20.0% |
| !! | TTATGACTAATTGATTAATC+AGG | - | chr8.2:22815588-22815607 | MS.gene61273:CDS | 20.0% |
| !!! | GTTGTTGTGTTTTTTATTTT+TGG | - | chr8.2:22815123-22815142 | MS.gene61273:intron | 20.0% |
| ! | ACAAAAAACATTTCAAGCAA+TGG | + | chr8.2:22816219-22816238 | None:intergenic | 25.0% |
| ! | ATATGACAGATATTATGAGA+CGG | - | chr8.2:22815309-22815328 | MS.gene61273:CDS | 25.0% |
| !! | ACGCATTTTTATGTTACATT+CGG | - | chr8.2:22815977-22815996 | MS.gene61273:intron | 25.0% |
| !! | TTGAAAACTACACTCTTTTA+AGG | - | chr8.2:22815271-22815290 | MS.gene61273:intron | 25.0% |
| AACATTTCAAGCAATGGTTT+CGG | + | chr8.2:22816213-22816232 | None:intergenic | 30.0% | |
| ACTAATTGATTAATCAGGTG+AGG | - | chr8.2:22815593-22815612 | MS.gene61273:CDS | 30.0% | |
| ATATCAAGTTTAGGTAGAAG+AGG | + | chr8.2:22814919-22814938 | None:intergenic | 30.0% | |
| ATGCATGTGATACTAATTCA+AGG | - | chr8.2:22815210-22815229 | MS.gene61273:intron | 30.0% | |
| TGCATGTGATACTAATTCAA+GGG | - | chr8.2:22815211-22815230 | MS.gene61273:intron | 30.0% | |
| TTTGAATTGATAGACCAATG+CGG | - | chr8.2:22816157-22816176 | MS.gene61273:intron | 30.0% | |
| ! | CGCATTTTTATGTTACATTC+GGG | - | chr8.2:22815978-22815997 | MS.gene61273:intron | 30.0% |
| !!! | GAAATGTTTTTTGTTGTGAG+TGG | - | chr8.2:22816225-22816244 | MS.gene61273:intron | 30.0% |
| !!! | TTATTTTTGGTCAAGATCGT+TGG | - | chr8.2:22815136-22815155 | MS.gene61273:intron | 30.0% |
| AAACACAACAACGACTGATA+AGG | + | chr8.2:22815115-22815134 | None:intergenic | 35.0% | |
| AAGTTTATTTCACCACTTGG+AGG | + | chr8.2:22816321-22816340 | None:intergenic | 35.0% | |
| ACCACAACAGCAAAGTAATA+AGG | + | chr8.2:22815856-22815875 | None:intergenic | 35.0% | |
| AGAGCAGTATGATACAAACA+AGG | + | chr8.2:22814802-22814821 | None:intergenic | 35.0% | |
| AGATATTATGAGACGGAGTA+AGG | - | chr8.2:22815316-22815335 | MS.gene61273:CDS | 35.0% | |
| CAAGTGGTGAAATAAACTTG+AGG | - | chr8.2:22816322-22816341 | MS.gene61273:CDS | 35.0% | |
| CAATCAATTGAACCATGATC+CGG | + | chr8.2:22816115-22816134 | None:intergenic | 35.0% | |
| CTCAAGTTTATTTCACCACT+TGG | + | chr8.2:22816324-22816343 | None:intergenic | 35.0% | |
| GATCAAACTGGTTAAATGTC+CGG | - | chr8.2:22816093-22816112 | MS.gene61273:intron | 35.0% | |
| GTACAGTGGCTATAACATAA+TGG | - | chr8.2:22815804-22815823 | MS.gene61273:CDS | 35.0% | |
| TATAGCCACTGTACATACAT+GGG | + | chr8.2:22815798-22815817 | None:intergenic | 35.0% | |
| TATGGAAGAACAGTGAATGA+TGG | - | chr8.2:22815405-22815424 | MS.gene61273:CDS | 35.0% | |
| TCTGCAGAGCTATTCAAATA+TGG | - | chr8.2:22815745-22815764 | MS.gene61273:CDS | 35.0% | |
| TGGAAATGCAGGTGTTTATT+GGG | - | chr8.2:22816356-22816375 | MS.gene61273:CDS | 35.0% | |
| TTATAGCCACTGTACATACA+TGG | + | chr8.2:22815799-22815818 | None:intergenic | 35.0% | |
| !! | AAGGATTTTTGCTGTGTTCA+TGG | + | chr8.2:22815837-22815856 | None:intergenic | 35.0% |
| !! | TCCTTATTACTTTGCTGTTG+TGG | - | chr8.2:22815852-22815871 | MS.gene61273:intron | 35.0% |
| ACCATAGTCTGTTACCACTA+CGG | + | chr8.2:22815656-22815675 | None:intergenic | 40.0% | |
| AGAATGCTATCCCTAGTGAT+TGG | - | chr8.2:22816388-22816407 | MS.gene61273:CDS | 40.0% | |
| ATCACTAGGGATAGCATTCT+TGG | + | chr8.2:22816388-22816407 | None:intergenic | 40.0% | |
| ATGTCAATGCTGTTGAGATG+TGG | - | chr8.2:22815899-22815918 | MS.gene61273:intron | 40.0% | |
| CATCAGACTGATGATCAAAC+TGG | - | chr8.2:22816081-22816100 | MS.gene61273:intron | 40.0% | |
| CCACAATACTGCGATGAAAA+TGG | - | chr8.2:22815625-22815644 | MS.gene61273:intron | 40.0% | |
| CGGTTCAACTTGGTATGATT+TGG | - | chr8.2:22816177-22816196 | MS.gene61273:intron | 40.0% | |
| GACTCCAGAGCAACATATTA+CGG | - | chr8.2:22814857-22814876 | MS.gene61273:CDS | 40.0% | |
| GTGGAAATGCAGGTGTTTAT+TGG | - | chr8.2:22816355-22816374 | MS.gene61273:CDS | 40.0% | |
| GTGTCTAAGCTATGGAAGAA+TGG | - | chr8.2:22815441-22815460 | MS.gene61273:CDS | 40.0% | |
| GTTGTGGTTCTCTATGTAGA+TGG | - | chr8.2:22815868-22815887 | MS.gene61273:intron | 40.0% | |
| TAGAAGAGGAGGATCATACT+TGG | + | chr8.2:22814905-22814924 | None:intergenic | 40.0% | |
| TATTTCACCACTTGGAGGAT+TGG | + | chr8.2:22816316-22816335 | None:intergenic | 40.0% | |
| TCAAGTTTAGGTAGAAGAGG+AGG | + | chr8.2:22814916-22814935 | None:intergenic | 40.0% | |
| TGATACAAACAAGGCCAAGT+TGG | + | chr8.2:22814793-22814812 | None:intergenic | 40.0% | |
| ! | CCATTTTCATCGCAGTATTG+TGG | + | chr8.2:22815628-22815647 | None:intergenic | 40.0% |
| !! | CTCACTTTTAAGCACCAACT+TGG | - | chr8.2:22814776-22814795 | MS.gene61273:CDS | 40.0% |
| AACTTGAGGTTCCAAGTGAG+TGG | - | chr8.2:22816336-22816355 | MS.gene61273:CDS | 45.0% | |
| AAGCTATGGAAGAATGGCAC+TGG | - | chr8.2:22815447-22815466 | MS.gene61273:CDS | 45.0% | |
| ACCGTAGTGGTAACAGACTA+TGG | - | chr8.2:22815652-22815671 | MS.gene61273:intron | 45.0% | |
| AGAGTCCCATGTATGTACAG+TGG | - | chr8.2:22815790-22815809 | MS.gene61273:CDS | 45.0% | |
| AGGAAGATTGCCAAGAATGG+AGG | - | chr8.2:22816253-22816272 | MS.gene61273:intron | 45.0% | |
| CTGGTTAAATGTCCGGATCA+TGG | - | chr8.2:22816100-22816119 | MS.gene61273:intron | 45.0% | |
| GACTTCATAATGAGTCCACG+AGG | - | chr8.2:22815691-22815710 | MS.gene61273:intron | 45.0% | |
| GCTACCGTAATATGTTGCTC+TGG | + | chr8.2:22814864-22814883 | None:intergenic | 45.0% | |
| GTGAATGATGGCAATGTTGC+TGG | - | chr8.2:22815417-22815436 | MS.gene61273:CDS | 45.0% | |
| GTGGTAACAGACTATGGTGA+AGG | - | chr8.2:22815658-22815677 | MS.gene61273:intron | 45.0% | |
| TAGACCAATGCGGTTCAACT+TGG | - | chr8.2:22816167-22816186 | MS.gene61273:intron | 45.0% | |
| TCTTGTGAGGTACATAGCTG+AGG | + | chr8.2:22814827-22814846 | None:intergenic | 45.0% | |
| TGAAAATGGAGCAACCGTAG+TGG | - | chr8.2:22815639-22815658 | MS.gene61273:intron | 45.0% | |
| TGCAGGAAGATTGCCAAGAA+TGG | - | chr8.2:22816250-22816269 | MS.gene61273:intron | 45.0% | |
| TGCTATCCCTAGTGATTGGA+AGG | - | chr8.2:22816392-22816411 | MS.gene61273:CDS | 45.0% | |
| TGGAGCTGCATATGACACTA+TGG | - | chr8.2:22816416-22816435 | MS.gene61273:CDS | 45.0% | |
| TTCCAAGTGAGTGGAAATGC+AGG | - | chr8.2:22816345-22816364 | MS.gene61273:CDS | 45.0% | |
| TTGCTGGTGTGTCTAAGCTA+TGG | - | chr8.2:22815433-22815452 | MS.gene61273:CDS | 45.0% | |
| TTGGAGTCCCATAGCAATCT+GGG | + | chr8.2:22814886-22814905 | None:intergenic | 45.0% | |
| ! | CATACCAAGTTGAACCGCAT+TGG | + | chr8.2:22816174-22816193 | None:intergenic | 45.0% |
| ! | GTCAGTAAAGGAGTCTTGTG+AGG | + | chr8.2:22814840-22814859 | None:intergenic | 45.0% |
| ! | TATACTTTAGGGGGAGCTTG+TGG | - | chr8.2:22815372-22815391 | MS.gene61273:CDS | 45.0% |
| !! | GCTTGTGGCTTTGGAGAATA+TGG | - | chr8.2:22815387-22815406 | MS.gene61273:CDS | 45.0% |
| !! | TGTTGCTCTGGAGTCAGTAA+AGG | + | chr8.2:22814852-22814871 | None:intergenic | 45.0% |
| !! | TTTTGTTGTGAGTGGTGTGC+AGG | - | chr8.2:22816233-22816252 | MS.gene61273:intron | 45.0% |
| ACGGTAGCCCAGATTGCTAT+GGG | - | chr8.2:22814876-22814895 | MS.gene61273:CDS | 50.0% | |
| ACTCCATAAACCCTCCTCAG+TGG | + | chr8.2:22816279-22816298 | None:intergenic | 50.0% | |
| ATCCCTAGTGATTGGAAGGC+TGG | - | chr8.2:22816396-22816415 | MS.gene61273:CDS | 50.0% | |
| CAATGCTGTTGAGATGTGGC+AGG | - | chr8.2:22815903-22815922 | MS.gene61273:intron | 50.0% | |
| CACCTGCATTTCCACTCACT+TGG | + | chr8.2:22816350-22816369 | None:intergenic | 50.0% | |
| CTCCAGCCTTCCAATCACTA+GGG | + | chr8.2:22816401-22816420 | None:intergenic | 50.0% | |
| CTTGGAGTCCCATAGCAATC+TGG | + | chr8.2:22814887-22814906 | None:intergenic | 50.0% | |
| GACTATGCCAATCCTCCAAG+TGG | - | chr8.2:22816306-22816325 | MS.gene61273:intron | 50.0% | |
| TACGGTAGCCCAGATTGCTA+TGG | - | chr8.2:22814875-22814894 | MS.gene61273:CDS | 50.0% | |
| AAGAATGGAGGCCACTGAGG+AGG | - | chr8.2:22816265-22816284 | MS.gene61273:intron | 55.0% | |
| AGAATGGAGGCCACTGAGGA+GGG | - | chr8.2:22816266-22816285 | MS.gene61273:intron | 55.0% | |
| AGGCCACTGAGGAGGGTTTA+TGG | - | chr8.2:22816273-22816292 | MS.gene61273:intron | 55.0% | |
| CCACGAGGCTACGCGAAATT+GGG | - | chr8.2:22815706-22815725 | MS.gene61273:intron | 55.0% | |
| GCTCCAGCCTTCCAATCACT+AGG | + | chr8.2:22816402-22816421 | None:intergenic | 55.0% | |
| TCCACGAGGCTACGCGAAAT+TGG | - | chr8.2:22815705-22815724 | MS.gene61273:intron | 55.0% | |
| TCCTCAGTGGCCTCCATTCT+TGG | + | chr8.2:22816266-22816285 | None:intergenic | 55.0% | |
| TTAGGGGGAGCTTGTGGCTT+TGG | - | chr8.2:22815378-22815397 | MS.gene61273:CDS | 55.0% | |
| !! | TGGAAGAATGGCACTGGCTG+CGG | - | chr8.2:22815453-22815472 | MS.gene61273:CDS | 55.0% |
| CCCAATTTCGCGTAGCCTCG+TGG | + | chr8.2:22815709-22815728 | None:intergenic | 60.0% | |
| GCCAAGAATGGAGGCCACTG+AGG | - | chr8.2:22816262-22816281 | MS.gene61273:intron | 60.0% | |
| TGGCTGCGGTGCATGCTATC+AGG | - | chr8.2:22815467-22815486 | MS.gene61273:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 22814770 | 22816452 | 22814770 | ID=MS.gene61273 |
| chr8.2 | mRNA | 22814770 | 22816452 | 22814770 | ID=MS.gene61273.t1;Parent=MS.gene61273 |
| chr8.2 | exon | 22816317 | 22816452 | 22816317 | ID=MS.gene61273.t1.exon1;Parent=MS.gene61273.t1 |
| chr8.2 | CDS | 22816317 | 22816452 | 22816317 | ID=cds.MS.gene61273.t1;Parent=MS.gene61273.t1 |
| chr8.2 | exon | 22815734 | 22815840 | 22815734 | ID=MS.gene61273.t1.exon2;Parent=MS.gene61273.t1 |
| chr8.2 | CDS | 22815734 | 22815840 | 22815734 | ID=cds.MS.gene61273.t1;Parent=MS.gene61273.t1 |
| chr8.2 | exon | 22815298 | 22815612 | 22815298 | ID=MS.gene61273.t1.exon3;Parent=MS.gene61273.t1 |
| chr8.2 | CDS | 22815298 | 22815612 | 22815298 | ID=cds.MS.gene61273.t1;Parent=MS.gene61273.t1 |
| chr8.2 | exon | 22814770 | 22814967 | 22814770 | ID=MS.gene61273.t1.exon4;Parent=MS.gene61273.t1 |
| chr8.2 | CDS | 22814770 | 22814967 | 22814770 | ID=cds.MS.gene61273.t1;Parent=MS.gene61273.t1 |
| Gene Sequence |
| Protein sequence |
