Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61433.t1 | PNX78683.1 | 67.3 | 404 | 100 | 8 | 1 | 399 | 1 | 377 | 9.00E-134 | 487.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61433.t1 | Q9SK32 | 24.3 | 346 | 213 | 13 | 16 | 337 | 45 | 365 | 1.0e-08 | 63.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61433.t1 | A0A2K3LJI0 | 67.3 | 404 | 100 | 8 | 1 | 399 | 1 | 377 | 6.5e-134 | 487.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058294 | MS.gene61433 | 0.803119 | 4.06E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene61433 | 0.805293 | 1.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 106 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATACTATTTCTGATTTA+TGG | 0.064262 | 6.3:-79607419 | MS.gene61433:CDS |
| CTTTACTTTATCTAGGTATT+TGG | 0.113519 | 6.3:+79606130 | None:intergenic |
| TTTACTTTATCTAGGTATTT+GGG | 0.171349 | 6.3:+79606131 | None:intergenic |
| CAACATATTTGACGAAGTTT+TGG | 0.280102 | 6.3:+79606992 | None:intergenic |
| GCAGCACTATTGGTGTTAAT+TGG | 0.284825 | 6.3:-79607045 | MS.gene61433:CDS |
| TCTAAGGCATCTGAATGATT+TGG | 0.291023 | 6.3:+79605678 | None:intergenic |
| TGTATCCAAAGACATCTTTC+GGG | 0.309378 | 6.3:+79605629 | None:intergenic |
| AGAAGCCATTCTCGGCGATT+TGG | 0.314123 | 6.3:-79606228 | MS.gene61433:CDS |
| CGAAAATCAACGGCAACCTT+TGG | 0.315115 | 6.3:-79606870 | MS.gene61433:CDS |
| GCTGCCTTCATCCTTGAAAT+AGG | 0.321401 | 6.3:+79607063 | None:intergenic |
| TATAACTGGTTTGCCCATTC+GGG | 0.323338 | 6.3:-79607208 | MS.gene61433:CDS |
| TTGTATCCAAAGACATCTTT+CGG | 0.325509 | 6.3:+79605628 | None:intergenic |
| ATATAACTGGTTTGCCCATT+CGG | 0.334592 | 6.3:-79607209 | MS.gene61433:CDS |
| TTTCGGGACTCGGAATGATT+TGG | 0.335895 | 6.3:+79605645 | None:intergenic |
| TTCTCTTTGTTGTCCACCAC+TGG | 0.337784 | 6.3:+79605429 | None:intergenic |
| TTTAACATAGAAATCTATAA+AGG | 0.338934 | 6.3:-79607138 | MS.gene61433:CDS |
| CGAGTCCCGAAAGATGTCTT+TGG | 0.343362 | 6.3:-79605634 | MS.gene61433:CDS |
| ATTTGGAGTCTCATATTCTA+AGG | 0.343609 | 6.3:+79605662 | None:intergenic |
| TGGCGGCTAGATGCGGTCTA+TGG | 0.350063 | 6.3:+79605874 | None:intergenic |
| CTTCTCATTAGGACATAACT+TGG | 0.361817 | 6.3:-79606001 | MS.gene61433:intron |
| GATTTCTGATGACGACGATT+AGG | 0.365266 | 6.3:-79604858 | None:intergenic |
| ACCTCGTGTCAAAACGAAAT+AGG | 0.368290 | 6.3:-79605794 | MS.gene61433:CDS |
| AAGGATGAAGGCAGCACTAT+TGG | 0.370447 | 6.3:-79607055 | MS.gene61433:CDS |
| AAACGAAATAGGAGATTGTT+TGG | 0.373321 | 6.3:-79605783 | MS.gene61433:CDS |
| CTCCTCACAAATACTTTCTC+AGG | 0.383729 | 6.3:-79607325 | MS.gene61433:CDS |
| AGTTTAAAAGAAGCCATTCT+CGG | 0.384280 | 6.3:-79606236 | MS.gene61433:CDS |
| CAGTCACAGTTACAGCTTCA+TGG | 0.384410 | 6.3:-79605966 | MS.gene61433:CDS |
| GTGCTTCCTTTACTTTATCT+AGG | 0.387840 | 6.3:+79606123 | None:intergenic |
| TATCTAGGTATTTGGGGTTG+TGG | 0.391613 | 6.3:+79606138 | None:intergenic |
| TTTCCGCACTGAGATTCTTC+GGG | 0.400515 | 6.3:+79605504 | None:intergenic |
| TTCTTACAAAGCTTCTCAAC+AGG | 0.407421 | 6.3:+79604905 | None:intergenic |
| CATTCTCGGCGATTTGGACT+TGG | 0.407861 | 6.3:-79606222 | MS.gene61433:CDS |
| CTCATTTGCACCATTCTGAC+GGG | 0.409043 | 6.3:+79605584 | None:intergenic |
| GACGTAGTGCTTGCTATGGT+TGG | 0.416348 | 6.3:-79604880 | MS.gene61433:CDS |
| CAAAGACATCTTTCGGGACT+CGG | 0.417703 | 6.3:+79605635 | None:intergenic |
| TGAGGATGTCTTCTTGTCCT+TGG | 0.419670 | 6.3:+79607164 | None:intergenic |
| GAAAATCAACGGCAACCTTT+GGG | 0.421762 | 6.3:-79606869 | MS.gene61433:CDS |
| CGGCAACCTTTGGGTTGTAC+TGG | 0.423232 | 6.3:-79606860 | MS.gene61433:intron |
| GAGCTCACGGAATGGAATGC+TGG | 0.439313 | 6.3:-79605741 | MS.gene61433:CDS |
| TCCTTGGAAGCGTCAATGAT+TGG | 0.447721 | 6.3:+79607180 | None:intergenic |
| ATGGATTTCATACAATATAT+CGG | 0.449372 | 6.3:+79605903 | None:intergenic |
| AGCTCACGGAATGGAATGCT+GGG | 0.459053 | 6.3:-79605740 | MS.gene61433:CDS |
| ATGCGGTCTATGGTGCACTA+TGG | 0.465550 | 6.3:+79605884 | None:intergenic |
| TTCATAACGCAATCATCAAA+TGG | 0.469089 | 6.3:-79606915 | MS.gene61433:CDS |
| TCATGGCATACTGAAGGAAC+AGG | 0.473813 | 6.3:-79605949 | MS.gene61433:CDS |
| CAAGTCCAAATCGCCGAGAA+TGG | 0.474431 | 6.3:+79606223 | None:intergenic |
| CCTCATTTGCACCATTCTGA+CGG | 0.476066 | 6.3:+79605583 | None:intergenic |
| ATCATCAAATGGAAGAAAGC+GGG | 0.484564 | 6.3:-79606904 | MS.gene61433:CDS |
| ATTCTTCGGGTATAGAATGA+TGG | 0.486046 | 6.3:+79605517 | None:intergenic |
| GCACGCAAAGGATAAGAGTC+TGG | 0.489105 | 6.3:-79607088 | MS.gene61433:CDS |
| TAGATTTGAGCAAGCTAACC+TGG | 0.491850 | 6.3:-79605827 | MS.gene61433:CDS |
| AGAAAATGAAGTTGCTCAGA+AGG | 0.501525 | 6.3:-79605364 | MS.gene61433:CDS |
| TATAAGGCTATGGCGACAAA+AGG | 0.505200 | 6.3:-79607453 | None:intergenic |
| TCTAGCCGCCAAGCAGTTTG+AGG | 0.505291 | 6.3:-79605862 | MS.gene61433:CDS |
| TTACTTTATCTAGGTATTTG+GGG | 0.507437 | 6.3:+79606132 | None:intergenic |
| AGAGTCTGGATCCTATTTCA+AGG | 0.510043 | 6.3:-79607074 | MS.gene61433:CDS |
| ATGATTGGTATGCCCCGAAT+GGG | 0.520564 | 6.3:+79607195 | None:intergenic |
| GGAATGGAATGCTGGGAAGC+TGG | 0.521998 | 6.3:-79605733 | MS.gene61433:CDS |
| CGTCAGTTCCTCAAACTGCT+TGG | 0.523092 | 6.3:+79605854 | None:intergenic |
| TGTAACTGTGACTGTTTGTA+TGG | 0.525632 | 6.3:+79605975 | None:intergenic |
| CCGTCAGAATGGTGCAAATG+AGG | 0.527041 | 6.3:-79605583 | MS.gene61433:CDS |
| TTTGGATTCTCTTCATACCT+CGG | 0.529014 | 6.3:+79605696 | None:intergenic |
| TATGCAAAGGCTGCATCACT+AGG | 0.531708 | 6.3:+79605549 | None:intergenic |
| TAGAGGGAGTAATGTTGAGC+AGG | 0.534656 | 6.3:-79605466 | MS.gene61433:CDS |
| GGATCCTATTTCAAGGATGA+AGG | 0.545527 | 6.3:-79607067 | MS.gene61433:CDS |
| TTTGTTTACTGACTTGATCA+CGG | 0.546062 | 6.3:+79607379 | None:intergenic |
| TCATACAATATATCGGTGAC+AGG | 0.548429 | 6.3:+79605910 | None:intergenic |
| ACCAATCATTGACGCTTCCA+AGG | 0.549063 | 6.3:-79607181 | MS.gene61433:CDS |
| AACATAGAAATCTATAAAGG+TGG | 0.549556 | 6.3:-79607135 | MS.gene61433:CDS |
| TTACGCTATTAGCAAACTAA+AGG | 0.552395 | 6.3:-79607112 | MS.gene61433:CDS |
| AACTGCTTGGCGGCTAGATG+CGG | 0.555488 | 6.3:+79605867 | None:intergenic |
| TTCTTCGGGTATAGAATGAT+GGG | 0.555996 | 6.3:+79605518 | None:intergenic |
| CAAATACCTAGATAAAGTAA+AGG | 0.559194 | 6.3:-79606129 | MS.gene61433:CDS |
| CAGTTCCTCAAACTGCTTGG+CGG | 0.562632 | 6.3:+79605857 | None:intergenic |
| AATGATTGGTATGCCCCGAA+TGG | 0.563677 | 6.3:+79607194 | None:intergenic |
| TTCACAACTGAGTGCAGCAA+AGG | 0.577696 | 6.3:+79606185 | None:intergenic |
| ATTCACAGTCCCCGTCAGAA+TGG | 0.578168 | 6.3:-79605594 | MS.gene61433:CDS |
| ACTTTCTACAACTGAGCTCA+CGG | 0.583963 | 6.3:-79605754 | MS.gene61433:CDS |
| GCTCAACATTACTCCCTCTA+CGG | 0.587011 | 6.3:+79605469 | None:intergenic |
| TTTGCTGCACTCAGTTGTGA+AGG | 0.587038 | 6.3:-79606183 | MS.gene61433:CDS |
| TTCTCATTAGGACATAACTT+GGG | 0.591058 | 6.3:-79606000 | MS.gene61433:intron |
| CTACAACTGAGCTCACGGAA+TGG | 0.591298 | 6.3:-79605749 | MS.gene61433:CDS |
| TGAAGTCGACAATTATGCGT+GGG | 0.592376 | 6.3:-79606959 | MS.gene61433:CDS |
| ACTGAACACTCTTTCTGAGA+AGG | 0.592570 | 6.3:-79606102 | MS.gene61433:intron |
| ACTATTTCTGATTTATGGAG+CGG | 0.594038 | 6.3:-79607414 | MS.gene61433:CDS |
| AAGCTTCTCAACAGGTTGTG+AGG | 0.598561 | 6.3:+79604913 | None:intergenic |
| AAGAGACGTAGTGCTTGCTA+TGG | 0.604335 | 6.3:-79604884 | MS.gene61433:CDS |
| AAGTGTATAAACTCCGTAGA+GGG | 0.606986 | 6.3:-79605482 | MS.gene61433:CDS |
| AAAGATTAACATGCCAGTGG+TGG | 0.612367 | 6.3:-79605442 | MS.gene61433:CDS |
| ATGGGCATTCTCATATGCAA+AGG | 0.622249 | 6.3:+79605536 | None:intergenic |
| AATCGAAAATCGAAAATCAA+CGG | 0.630652 | 6.3:-79606880 | MS.gene61433:CDS |
| GGTTGTGAGGACTTTGTCTG+AGG | 0.631759 | 6.3:+79604926 | None:intergenic |
| AATCATCAAATGGAAGAAAG+CGG | 0.635076 | 6.3:-79606905 | MS.gene61433:CDS |
| ACAGCTTCATGGCATACTGA+AGG | 0.637291 | 6.3:-79605955 | MS.gene61433:CDS |
| ATGAAGTCGACAATTATGCG+TGG | 0.637958 | 6.3:-79606960 | MS.gene61433:CDS |
| GCTCAGAAGGCTATGAGACA+AGG | 0.647945 | 6.3:-79605351 | MS.gene61433:intron |
| ATAACTGGTTTGCCCATTCG+GGG | 0.650604 | 6.3:-79607207 | MS.gene61433:CDS |
| CAAACTAAAGGAGCACGCAA+AGG | 0.651705 | 6.3:-79607100 | MS.gene61433:CDS |
| TCATTTGCACCATTCTGACG+GGG | 0.652967 | 6.3:+79605585 | None:intergenic |
| AAAGTGTATAAACTCCGTAG+AGG | 0.653099 | 6.3:-79605483 | MS.gene61433:CDS |
| TCATCAAATGGAAGAAAGCG+GGG | 0.663497 | 6.3:-79606903 | MS.gene61433:CDS |
| AACCTGAGAAAGTATTTGTG+AGG | 0.666395 | 6.3:+79607323 | None:intergenic |
| GAAGTCGACAATTATGCGTG+GGG | 0.674342 | 6.3:-79606958 | MS.gene61433:CDS |
| AGCTTACCAGTACAACCCAA+AGG | 0.681695 | 6.3:+79606854 | None:intergenic |
| GGAAAAGATTAACATGCCAG+TGG | 0.696388 | 6.3:-79605445 | MS.gene61433:CDS |
| ATACCCGAAGAATCTCAGTG+CGG | 0.818724 | 6.3:-79605507 | MS.gene61433:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAGTTAATTAAATTAAA+GGG | - | chr6.3:79605489-79605508 | MS.gene61433:CDS | 10.0% |
| !! | TTCATAGTTAATTAAATTAA+AGG | - | chr6.3:79605488-79605507 | MS.gene61433:CDS | 10.0% |
| !! | CATAGTTAATTAAATTAAAG+GGG | - | chr6.3:79605490-79605509 | MS.gene61433:CDS | 15.0% |
| !! | TTTAACATAGAAATCTATAA+AGG | - | chr6.3:79605165-79605184 | MS.gene61433:intron | 15.0% |
| !!! | TATATACTATTTCTGATTTA+TGG | - | chr6.3:79604884-79604903 | MS.gene61433:CDS | 15.0% |
| !!! | TATTTTTAATTCTTCTCATT+AGG | - | chr6.3:79606291-79606310 | MS.gene61433:intron | 15.0% |
| !! | AATAGTAAAAACAGTTTGAA+TGG | + | chr6.3:79605918-79605937 | None:intergenic | 20.0% |
| !! | AATTCTTTAAGTAAGCATAT+AGG | + | chr6.3:79605832-79605851 | None:intergenic | 20.0% |
| !! | AGAAGAATAATACAATGTAA+AGG | + | chr6.3:79607283-79607302 | None:intergenic | 20.0% |
| !! | ATATAGGATCAATAATTAGT+AGG | + | chr6.3:79605816-79605835 | None:intergenic | 20.0% |
| !! | ATATGCTTACTTAAAGAATT+AGG | - | chr6.3:79605832-79605851 | MS.gene61433:CDS | 20.0% |
| !! | ATGGATTTCATACAATATAT+CGG | + | chr6.3:79606403-79606422 | None:intergenic | 20.0% |
| !! | GATTTCTATGTTAAAAATTG+AGG | + | chr6.3:79605160-79605179 | None:intergenic | 20.0% |
| !! | TATGCTTACTTAAAGAATTA+GGG | - | chr6.3:79605833-79605852 | MS.gene61433:CDS | 20.0% |
| !! | TTTACTTTATCTAGGTATTT+GGG | + | chr6.3:79606175-79606194 | None:intergenic | 20.0% |
| !!! | CTTATTTTCTATTACAACTT+TGG | - | chr6.3:79605947-79605966 | MS.gene61433:CDS | 20.0% |
| ! | AACATAGAAATCTATAAAGG+TGG | - | chr6.3:79605168-79605187 | MS.gene61433:intron | 25.0% |
| ! | AATCGAAAATCGAAAATCAA+CGG | - | chr6.3:79605423-79605442 | MS.gene61433:CDS | 25.0% |
| ! | ATTCACCTTAAAAGTTCAAA+AGG | - | chr6.3:79607186-79607205 | MS.gene61433:CDS | 25.0% |
| ! | CAAATACCTAGATAAAGTAA+AGG | - | chr6.3:79606174-79606193 | MS.gene61433:CDS | 25.0% |
| ! | CTTTACTTTATCTAGGTATT+TGG | + | chr6.3:79606176-79606195 | None:intergenic | 25.0% |
| ! | TTACTTTATCTAGGTATTTG+GGG | + | chr6.3:79606174-79606193 | None:intergenic | 25.0% |
| !! | ATGAACCTTTTGAACTTTTA+AGG | + | chr6.3:79607194-79607213 | None:intergenic | 25.0% |
| !! | ATTATCTACGTTTTTACGTA+AGG | + | chr6.3:79607082-79607101 | None:intergenic | 25.0% |
| !! | CTTCTTTTAAACTTCGAATA+CGG | + | chr6.3:79606060-79606079 | None:intergenic | 25.0% |
| !! | GAGGATATTTTGTATATAAC+TGG | - | chr6.3:79605081-79605100 | MS.gene61433:intron | 25.0% |
| !! | TTGAACACTTTTATCTTCAA+CGG | - | chr6.3:79605036-79605055 | MS.gene61433:intron | 25.0% |
| !!! | CAAGAACTTTGAAATTCTAT+TGG | + | chr6.3:79606252-79606271 | None:intergenic | 25.0% |
| !!! | CATTTTCTTTAGAACTAAAC+AGG | + | chr6.3:79606927-79606946 | None:intergenic | 25.0% |
| AAACGAAATAGGAGATTGTT+TGG | - | chr6.3:79606520-79606539 | MS.gene61433:intron | 30.0% | |
| AAACTCTAAATTCAGTTGCT+AGG | + | chr6.3:79607220-79607239 | None:intergenic | 30.0% | |
| AATCATCAAATGGAAGAAAG+CGG | - | chr6.3:79605398-79605417 | MS.gene61433:CDS | 30.0% | |
| ACTTAAACTGCAGTTAAGTA+AGG | + | chr6.3:79605999-79606018 | None:intergenic | 30.0% | |
| AGTAATGTGAGATTTACTTG+TGG | + | chr6.3:79605868-79605887 | None:intergenic | 30.0% | |
| AGTTTAAAAGAAGCCATTCT+CGG | - | chr6.3:79606067-79606086 | MS.gene61433:intron | 30.0% | |
| ATTAACTAAAAAGGGTAACC+CGG | + | chr6.3:79605677-79605696 | None:intergenic | 30.0% | |
| CTTACTTAAAGAATTAGGGT+TGG | - | chr6.3:79605837-79605856 | MS.gene61433:CDS | 30.0% | |
| GACAACAAAGAGAAAAAATG+TGG | - | chr6.3:79606883-79606902 | MS.gene61433:CDS | 30.0% | |
| TGAATGGAATCTCAAATCTT+TGG | + | chr6.3:79605902-79605921 | None:intergenic | 30.0% | |
| TTAAATTAAAGGGGTAACCT+TGG | - | chr6.3:79605499-79605518 | MS.gene61433:CDS | 30.0% | |
| TTACGCTATTAGCAAACTAA+AGG | - | chr6.3:79605191-79605210 | MS.gene61433:intron | 30.0% | |
| TTCATAACGCAATCATCAAA+TGG | - | chr6.3:79605388-79605407 | MS.gene61433:CDS | 30.0% | |
| TTCTCATTAGGACATAACTT+GGG | - | chr6.3:79606303-79606322 | MS.gene61433:intron | 30.0% | |
| TTGTATCCAAAGACATCTTT+CGG | + | chr6.3:79606678-79606697 | None:intergenic | 30.0% | |
| ! | ATTTGGAGTCTCATATTCTA+AGG | + | chr6.3:79606644-79606663 | None:intergenic | 30.0% |
| ! | CAACATATTTGACGAAGTTT+TGG | + | chr6.3:79605314-79605333 | None:intergenic | 30.0% |
| ! | TCTTGTTTAAAAACAGGGTA+AGG | - | chr6.3:79605585-79605604 | MS.gene61433:CDS | 30.0% |
| !! | ACTATTTCTGATTTATGGAG+CGG | - | chr6.3:79604889-79604908 | MS.gene61433:CDS | 30.0% |
| !! | TTTGTTTACTGACTTGATCA+CGG | + | chr6.3:79604927-79604946 | None:intergenic | 30.0% |
| !!! | GAAGTTTTACTTTTTGCAGT+CGG | - | chr6.3:79606024-79606043 | MS.gene61433:intron | 30.0% |
| !!! | TAGTTTTGCTATTACTTTGG+AGG | - | chr6.3:79605062-79605081 | MS.gene61433:intron | 30.0% |
| !!! | TCGTAGTTTTGCTATTACTT+TGG | - | chr6.3:79605059-79605078 | MS.gene61433:intron | 30.0% |
| !!! | TTACCCTGTTTTTAAACAAG+AGG | + | chr6.3:79605586-79605605 | None:intergenic | 30.0% |
| AAAGTGTATAAACTCCGTAG+AGG | - | chr6.3:79606820-79606839 | MS.gene61433:intron | 35.0% | |
| AAGGTGAATAGACAAAGTTG+AGG | + | chr6.3:79607175-79607194 | None:intergenic | 35.0% | |
| AAGTGTATAAACTCCGTAGA+GGG | - | chr6.3:79606821-79606840 | MS.gene61433:intron | 35.0% | |
| AATGTGAGATTTACTTGTGG+TGG | + | chr6.3:79605865-79605884 | None:intergenic | 35.0% | |
| ACAAAGAGAAAAAATGTGGC+AGG | - | chr6.3:79606887-79606906 | MS.gene61433:CDS | 35.0% | |
| AGAAAATGAAGTTGCTCAGA+AGG | - | chr6.3:79606939-79606958 | MS.gene61433:CDS | 35.0% | |
| AGAAGCAGATAATCAAAGCT+AGG | - | chr6.3:79605762-79605781 | MS.gene61433:CDS | 35.0% | |
| AGGTGAATAGACAAAGTTGA+GGG | + | chr6.3:79607174-79607193 | None:intergenic | 35.0% | |
| ATCATCAAATGGAAGAAAGC+GGG | - | chr6.3:79605399-79605418 | MS.gene61433:CDS | 35.0% | |
| ATCCCAAAAGCTTAAGCTAT+TGG | - | chr6.3:79607012-79607031 | MS.gene61433:CDS | 35.0% | |
| ATTCTTCGGGTATAGAATGA+TGG | + | chr6.3:79606789-79606808 | None:intergenic | 35.0% | |
| CTTCTCATTAGGACATAACT+TGG | - | chr6.3:79606302-79606321 | MS.gene61433:intron | 35.0% | |
| GATAATCAAAGCTAGGAACT+TGG | - | chr6.3:79605769-79605788 | MS.gene61433:CDS | 35.0% | |
| GTGCTTCCTTTACTTTATCT+AGG | + | chr6.3:79606183-79606202 | None:intergenic | 35.0% | |
| TAGAGTTTGCATGAGGAAAA+AGG | - | chr6.3:79607232-79607251 | MS.gene61433:CDS | 35.0% | |
| TCATACAATATATCGGTGAC+AGG | + | chr6.3:79606396-79606415 | None:intergenic | 35.0% | |
| TCCCAAAAGCTTAAGCTATT+GGG | - | chr6.3:79607013-79607032 | MS.gene61433:CDS | 35.0% | |
| TGTAACTGTGACTGTTTGTA+TGG | + | chr6.3:79606331-79606350 | None:intergenic | 35.0% | |
| TGTATCCAAAGACATCTTTC+GGG | + | chr6.3:79606677-79606696 | None:intergenic | 35.0% | |
| TTCTTACAAAGCTTCTCAAC+AGG | + | chr6.3:79607401-79607420 | None:intergenic | 35.0% | |
| TTCTTCGGGTATAGAATGAT+GGG | + | chr6.3:79606788-79606807 | None:intergenic | 35.0% | |
| TTTGGATTCTCTTCATACCT+CGG | + | chr6.3:79606610-79606629 | None:intergenic | 35.0% | |
| ! | ACAGCCTCTTGTTTAAAAAC+AGG | - | chr6.3:79605579-79605598 | MS.gene61433:CDS | 35.0% |
| ! | ACCCAATAGCTTAAGCTTTT+GGG | + | chr6.3:79607017-79607036 | None:intergenic | 35.0% |
| ! | ATCTACGTTTTTACGTAAGG+AGG | + | chr6.3:79607079-79607098 | None:intergenic | 35.0% |
| ! | CAGCCTCTTGTTTAAAAACA+GGG | - | chr6.3:79605580-79605599 | MS.gene61433:CDS | 35.0% |
| ! | CTGAATTTAGAGTTTGCATG+AGG | - | chr6.3:79607225-79607244 | MS.gene61433:CDS | 35.0% |
| ! | GCTCAGTTGTAGAAAGTTTT+TGG | + | chr6.3:79606546-79606565 | None:intergenic | 35.0% |
| ! | TCTAAGGCATCTGAATGATT+TGG | + | chr6.3:79606628-79606647 | None:intergenic | 35.0% |
| !! | AACCTGAGAAAGTATTTGTG+AGG | + | chr6.3:79604983-79605002 | None:intergenic | 35.0% |
| !! | ATATAACTGGTTTGCCCATT+CGG | - | chr6.3:79605094-79605113 | MS.gene61433:intron | 35.0% |
| AAAGATTAACATGCCAGTGG+TGG | - | chr6.3:79606861-79606880 | MS.gene61433:CDS | 40.0% | |
| ACCTCGTGTCAAAACGAAAT+AGG | - | chr6.3:79606509-79606528 | MS.gene61433:intron | 40.0% | |
| ACTTTCTACAACTGAGCTCA+CGG | - | chr6.3:79606549-79606568 | MS.gene61433:intron | 40.0% | |
| AGAGTCTGGATCCTATTTCA+AGG | - | chr6.3:79605229-79605248 | MS.gene61433:intron | 40.0% | |
| ATGAAGTCGACAATTATGCG+TGG | - | chr6.3:79605343-79605362 | MS.gene61433:intron | 40.0% | |
| ATGGGCATTCTCATATGCAA+AGG | + | chr6.3:79606770-79606789 | None:intergenic | 40.0% | |
| CGTACATTACACCAAATGGT+GGG | - | chr6.3:79605611-79605630 | MS.gene61433:CDS | 40.0% | |
| CTCCTCACAAATACTTTCTC+AGG | - | chr6.3:79604978-79604997 | MS.gene61433:intron | 40.0% | |
| GAAAATCAACGGCAACCTTT+GGG | - | chr6.3:79605434-79605453 | MS.gene61433:CDS | 40.0% | |
| GGAAAAGATTAACATGCCAG+TGG | - | chr6.3:79606858-79606877 | MS.gene61433:intron | 40.0% | |
| GGATCCTATTTCAAGGATGA+AGG | - | chr6.3:79605236-79605255 | MS.gene61433:intron | 40.0% | |
| GTTGCGTACATTACACCAAA+TGG | - | chr6.3:79605607-79605626 | MS.gene61433:CDS | 40.0% | |
| TAGATTTGAGCAAGCTAACC+TGG | - | chr6.3:79606476-79606495 | MS.gene61433:intron | 40.0% | |
| TCATCAAATGGAAGAAAGCG+GGG | - | chr6.3:79605400-79605419 | MS.gene61433:CDS | 40.0% | |
| TGAAGTCGACAATTATGCGT+GGG | - | chr6.3:79605344-79605363 | MS.gene61433:intron | 40.0% | |
| TTCATACCTCGGCAAAAAGT+CGG | + | chr6.3:79606599-79606618 | None:intergenic | 40.0% | |
| ! | ACTGAACACTCTTTCTGAGA+AGG | - | chr6.3:79606201-79606220 | MS.gene61433:CDS | 40.0% |
| ! | CACCCAATAGCTTAAGCTTT+TGG | + | chr6.3:79607018-79607037 | None:intergenic | 40.0% |
| ! | TATCTAGGTATTTGGGGTTG+TGG | + | chr6.3:79606168-79606187 | None:intergenic | 40.0% |
| ! | TTAAACAAGAGGCTGTTTCC+AGG | + | chr6.3:79605575-79605594 | None:intergenic | 40.0% |
| ! | TTTTCCGCACTGAGATTCTT+CGG | + | chr6.3:79606803-79606822 | None:intergenic | 40.0% |
| !! | GCAGCACTATTGGTGTTAAT+TGG | - | chr6.3:79605258-79605277 | MS.gene61433:intron | 40.0% |
| !! | TATAACTGGTTTGCCCATTC+GGG | - | chr6.3:79605095-79605114 | MS.gene61433:intron | 40.0% |
| !! | TCCTATTTCGTTTTGACACG+AGG | + | chr6.3:79606513-79606532 | None:intergenic | 40.0% |
| !!! | GCTTAAGCTTTTGGGATAGT+TGG | + | chr6.3:79607009-79607028 | None:intergenic | 40.0% |
| !!! | TGACGAAGTTTTGGTTTACG+TGG | + | chr6.3:79605305-79605324 | None:intergenic | 40.0% |
| AAGCTTCTCAACAGGTTGTG+AGG | + | chr6.3:79607393-79607412 | None:intergenic | 45.0% | |
| AAGGATGAAGGCAGCACTAT+TGG | - | chr6.3:79605248-79605267 | MS.gene61433:intron | 45.0% | |
| AATGATTGGTATGCCCCGAA+TGG | + | chr6.3:79605112-79605131 | None:intergenic | 45.0% | |
| ACAGCTTCATGGCATACTGA+AGG | - | chr6.3:79606348-79606367 | MS.gene61433:intron | 45.0% | |
| ACCAATCATTGACGCTTCCA+AGG | - | chr6.3:79605122-79605141 | MS.gene61433:intron | 45.0% | |
| AGCTTACCAGTACAACCCAA+AGG | + | chr6.3:79605452-79605471 | None:intergenic | 45.0% | |
| ATACCCGAAGAATCTCAGTG+CGG | - | chr6.3:79606796-79606815 | MS.gene61433:intron | 45.0% | |
| ATGATTGGTATGCCCCGAAT+GGG | + | chr6.3:79605111-79605130 | None:intergenic | 45.0% | |
| CAAAGACATCTTTCGGGACT+CGG | + | chr6.3:79606671-79606690 | None:intergenic | 45.0% | |
| CAGTCACAGTTACAGCTTCA+TGG | - | chr6.3:79606337-79606356 | MS.gene61433:intron | 45.0% | |
| CCTCATTTGCACCATTCTGA+CGG | + | chr6.3:79606723-79606742 | None:intergenic | 45.0% | |
| CGAAAATCAACGGCAACCTT+TGG | - | chr6.3:79605433-79605452 | MS.gene61433:CDS | 45.0% | |
| CTCATTTGCACCATTCTGAC+GGG | + | chr6.3:79606722-79606741 | None:intergenic | 45.0% | |
| GAAGTCGACAATTATGCGTG+GGG | - | chr6.3:79605345-79605364 | MS.gene61433:intron | 45.0% | |
| GCGTACATTACACCAAATGG+TGG | - | chr6.3:79605610-79605629 | MS.gene61433:CDS | 45.0% | |
| GCTCAACATTACTCCCTCTA+CGG | + | chr6.3:79606837-79606856 | None:intergenic | 45.0% | |
| GCTGCCTTCATCCTTGAAAT+AGG | + | chr6.3:79605243-79605262 | None:intergenic | 45.0% | |
| GTTGTTGTCATGTGACCGTA+AGG | - | chr6.3:79605535-79605554 | MS.gene61433:CDS | 45.0% | |
| TAGAGGGAGTAATGTTGAGC+AGG | - | chr6.3:79606837-79606856 | MS.gene61433:intron | 45.0% | |
| TATGCAAAGGCTGCATCACT+AGG | + | chr6.3:79606757-79606776 | None:intergenic | 45.0% | |
| TCATGGCATACTGAAGGAAC+AGG | - | chr6.3:79606354-79606373 | MS.gene61433:intron | 45.0% | |
| TCATTTGCACCATTCTGACG+GGG | + | chr6.3:79606721-79606740 | None:intergenic | 45.0% | |
| TCTGAGGAGTTTCTGCAAGA+GGG | + | chr6.3:79607364-79607383 | None:intergenic | 45.0% | |
| TGAGGATGTCTTCTTGTCCT+TGG | + | chr6.3:79605142-79605161 | None:intergenic | 45.0% | |
| TTCACAACTGAGTGCAGCAA+AGG | + | chr6.3:79606121-79606140 | None:intergenic | 45.0% | |
| TTTCCGCACTGAGATTCTTC+GGG | + | chr6.3:79606802-79606821 | None:intergenic | 45.0% | |
| TTTCGGGACTCGGAATGATT+TGG | + | chr6.3:79606661-79606680 | None:intergenic | 45.0% | |
| TTTGCTGCACTCAGTTGTGA+AGG | - | chr6.3:79606120-79606139 | MS.gene61433:CDS | 45.0% | |
| ! | AAGAGACGTAGTGCTTGCTA+TGG | - | chr6.3:79607419-79607438 | MS.gene61433:CDS | 45.0% |
| ! | CAAACTAAAGGAGCACGCAA+AGG | - | chr6.3:79605203-79605222 | MS.gene61433:intron | 45.0% |
| ! | TTCTCTTTGTTGTCCACCAC+TGG | + | chr6.3:79606877-79606896 | None:intergenic | 45.0% |
| !! | ATAACTGGTTTGCCCATTCG+GGG | - | chr6.3:79605096-79605115 | MS.gene61433:intron | 45.0% |
| !! | TCCTTGGAAGCGTCAATGAT+TGG | + | chr6.3:79605126-79605145 | None:intergenic | 45.0% |
| !! | TTAATTTAATTAACTAAAAA+GGG | + | chr6.3:79605685-79605704 | None:intergenic | 5.0% |
| !!! | TTTAATTTAATTAACTAAAA+AGG | + | chr6.3:79605686-79605705 | None:intergenic | 5.0% |
| AGAAGCCATTCTCGGCGATT+TGG | - | chr6.3:79606075-79606094 | MS.gene61433:intron | 50.0% | |
| AGCTCACGGAATGGAATGCT+GGG | - | chr6.3:79606563-79606582 | MS.gene61433:intron | 50.0% | |
| ATGCGGTCTATGGTGCACTA+TGG | + | chr6.3:79606422-79606441 | None:intergenic | 50.0% | |
| ATTCACAGTCCCCGTCAGAA+TGG | - | chr6.3:79606709-79606728 | MS.gene61433:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr6.3:79605519-79605538 | None:intergenic | 50.0% | |
| CAAGTCCAAATCGCCGAGAA+TGG | + | chr6.3:79606083-79606102 | None:intergenic | 50.0% | |
| CAGTTCCTCAAACTGCTTGG+CGG | + | chr6.3:79606449-79606468 | None:intergenic | 50.0% | |
| CCGTCAGAATGGTGCAAATG+AGG | - | chr6.3:79606720-79606739 | MS.gene61433:intron | 50.0% | |
| CGAGTCCCGAAAGATGTCTT+TGG | - | chr6.3:79606669-79606688 | MS.gene61433:intron | 50.0% | |
| CGTCAGTTCCTCAAACTGCT+TGG | + | chr6.3:79606452-79606471 | None:intergenic | 50.0% | |
| CTACAACTGAGCTCACGGAA+TGG | - | chr6.3:79606554-79606573 | MS.gene61433:intron | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | + | chr6.3:79605553-79605572 | None:intergenic | 50.0% | |
| GCACGCAAAGGATAAGAGTC+TGG | - | chr6.3:79605215-79605234 | MS.gene61433:intron | 50.0% | |
| GCTCAGAAGGCTATGAGACA+AGG | - | chr6.3:79606952-79606971 | MS.gene61433:CDS | 50.0% | |
| GGTTGTGAGGACTTTGTCTG+AGG | + | chr6.3:79607380-79607399 | None:intergenic | 50.0% | |
| GTCATGTGACCGTAAGGTCA+CGG | - | chr6.3:79605541-79605560 | MS.gene61433:CDS | 50.0% | |
| GTCTGAGGAGTTTCTGCAAG+AGG | + | chr6.3:79607365-79607384 | None:intergenic | 50.0% | |
| TCATGTGACCGTAAGGTCAC+GGG | - | chr6.3:79605542-79605561 | MS.gene61433:CDS | 50.0% | |
| ! | CATTCTCGGCGATTTGGACT+TGG | - | chr6.3:79606081-79606100 | MS.gene61433:intron | 50.0% |
| !! | GACGTAGTGCTTGCTATGGT+TGG | - | chr6.3:79607423-79607442 | MS.gene61433:CDS | 50.0% |
| !!! | TGGTTACCGACTTTTTGCCG+AGG | - | chr6.3:79606590-79606609 | MS.gene61433:intron | 50.0% |
| AACTGCTTGGCGGCTAGATG+CGG | + | chr6.3:79606439-79606458 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr6.3:79605554-79605573 | MS.gene61433:CDS | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr6.3:79605651-79605670 | None:intergenic | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr6.3:79605650-79605669 | None:intergenic | 55.0% | |
| GAGCTCACGGAATGGAATGC+TGG | - | chr6.3:79606562-79606581 | MS.gene61433:intron | 55.0% | |
| GGAATGGAATGCTGGGAAGC+TGG | - | chr6.3:79606570-79606589 | MS.gene61433:intron | 55.0% | |
| TCTAGCCGCCAAGCAGTTTG+AGG | - | chr6.3:79606441-79606460 | MS.gene61433:intron | 55.0% | |
| ! | CACGAGGTCAGTTTTCTGCC+AGG | + | chr6.3:79606497-79606516 | None:intergenic | 55.0% |
| !! | CGGCAACCTTTGGGTTGTAC+TGG | - | chr6.3:79605443-79605462 | MS.gene61433:CDS | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr6.3:79605508-79605527 | MS.gene61433:CDS | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr6.3:79605655-79605674 | MS.gene61433:CDS | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr6.3:79605638-79605657 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr6.3:79605638-79605657 | MS.gene61433:CDS | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr6.3:79605639-79605658 | None:intergenic | 60.0% | |
| TGGCGGCTAGATGCGGTCTA+TGG | + | chr6.3:79606432-79606451 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr6.3:79605639-79605658 | MS.gene61433:CDS | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr6.3:79605623-79605642 | MS.gene61433:CDS | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr6.3:79605640-79605659 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr6.3:79605625-79605644 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr6.3:79605644-79605663 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr6.3:79605645-79605664 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr6.3:79605656-79605675 | MS.gene61433:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 79604859 | 79607466 | 79604859 | ID=MS.gene61433 |
| chr6.3 | mRNA | 79604859 | 79607466 | 79604859 | ID=MS.gene61433.t1;Parent=MS.gene61433 |
| chr6.3 | exon | 79606861 | 79607466 | 79606861 | ID=MS.gene61433.t1.exon1;Parent=MS.gene61433.t1 |
| chr6.3 | CDS | 79606861 | 79607466 | 79606861 | ID=cds.MS.gene61433.t1;Parent=MS.gene61433.t1 |
| chr6.3 | exon | 79606103 | 79606282 | 79606103 | ID=MS.gene61433.t1.exon2;Parent=MS.gene61433.t1 |
| chr6.3 | CDS | 79606103 | 79606282 | 79606103 | ID=cds.MS.gene61433.t1;Parent=MS.gene61433.t1 |
| chr6.3 | exon | 79605352 | 79606012 | 79605352 | ID=MS.gene61433.t1.exon3;Parent=MS.gene61433.t1 |
| chr6.3 | CDS | 79605352 | 79606012 | 79605352 | ID=cds.MS.gene61433.t1;Parent=MS.gene61433.t1 |
| chr6.3 | exon | 79604859 | 79604953 | 79604859 | ID=MS.gene61433.t1.exon4;Parent=MS.gene61433.t1 |
| chr6.3 | CDS | 79604859 | 79604953 | 79604859 | ID=cds.MS.gene61433.t1;Parent=MS.gene61433.t1 |
| Gene Sequence |
| Protein sequence |
