Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61501.t1 | XP_003609315.1 | 100 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 2.40E-183 | 651.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61501.t1 | Q3E6T0 | 81.7 | 344 | 63 | 0 | 2 | 345 | 6 | 349 | 3.3e-157 | 555.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61501.t1 | G7JCY0 | 100.0 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 1.7e-183 | 651.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050414 | MS.gene61501 | 0.820991 | 5.12E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene61501 | 0.822134 | 2.79E-53 | -1.69E-46 |
| MS.gene058330 | MS.gene61501 | 0.832988 | 6.90E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene61501 | 0.831787 | 1.37E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61501.t1 | MTR_4g114360 | 100.000 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 0.0 | 700 |
| MS.gene61501.t1 | MTR_3g107470 | 84.302 | 344 | 54 | 0 | 2 | 345 | 6 | 349 | 0.0 | 610 |
| MS.gene61501.t1 | MTR_0011s0320 | 83.381 | 349 | 53 | 3 | 1 | 344 | 1 | 349 | 0.0 | 588 |
| MS.gene61501.t1 | MTR_0662s0010 | 100.000 | 277 | 0 | 0 | 1 | 277 | 1 | 277 | 0.0 | 556 |
| MS.gene61501.t1 | MTR_7g110380 | 44.940 | 336 | 181 | 3 | 9 | 343 | 10 | 342 | 3.20e-104 | 311 |
| MS.gene61501.t1 | MTR_4g123900 | 50.000 | 306 | 151 | 2 | 9 | 313 | 6 | 310 | 2.61e-98 | 296 |
| MS.gene61501.t1 | MTR_4g123900 | 50.871 | 287 | 139 | 2 | 9 | 294 | 6 | 291 | 5.26e-94 | 282 |
| MS.gene61501.t1 | MTR_2g070400 | 43.302 | 321 | 179 | 3 | 13 | 331 | 10 | 329 | 1.92e-85 | 261 |
| MS.gene61501.t1 | MTR_3g070000 | 32.441 | 299 | 182 | 6 | 18 | 305 | 29 | 318 | 4.46e-33 | 125 |
| MS.gene61501.t1 | MTR_8g090130 | 34.007 | 297 | 180 | 9 | 18 | 305 | 16 | 305 | 1.63e-32 | 123 |
| MS.gene61501.t1 | MTR_5g081710 | 32.558 | 301 | 183 | 6 | 16 | 305 | 11 | 302 | 3.65e-32 | 122 |
| MS.gene61501.t1 | MTR_3g462070 | 30.693 | 303 | 194 | 6 | 12 | 305 | 8 | 303 | 5.12e-31 | 119 |
| MS.gene61501.t1 | MTR_1g030320 | 23.684 | 342 | 244 | 7 | 3 | 332 | 1 | 337 | 1.01e-27 | 111 |
| MS.gene61501.t1 | MTR_3g072380 | 23.708 | 329 | 239 | 6 | 11 | 332 | 12 | 335 | 2.66e-27 | 110 |
| MS.gene61501.t1 | MTR_4g018760 | 30.928 | 291 | 191 | 5 | 21 | 305 | 20 | 306 | 3.70e-27 | 109 |
| MS.gene61501.t1 | MTR_8g016090 | 27.326 | 344 | 235 | 9 | 8 | 338 | 163 | 504 | 2.48e-26 | 109 |
| MS.gene61501.t1 | MTR_4g101860 | 28.947 | 304 | 202 | 7 | 18 | 313 | 57 | 354 | 9.83e-25 | 103 |
| MS.gene61501.t1 | MTR_8g016090 | 28.302 | 265 | 179 | 6 | 84 | 338 | 191 | 454 | 6.30e-20 | 90.9 |
| MS.gene61501.t1 | MTR_4g058860 | 26.957 | 345 | 208 | 15 | 25 | 345 | 22 | 346 | 2.35e-18 | 85.1 |
| MS.gene61501.t1 | MTR_2g094640 | 25.449 | 334 | 213 | 13 | 25 | 344 | 22 | 333 | 5.46e-18 | 84.3 |
| MS.gene61501.t1 | MTR_3g094270 | 25.723 | 311 | 186 | 12 | 42 | 335 | 37 | 319 | 5.41e-15 | 75.5 |
| MS.gene61501.t1 | MTR_3g094260 | 25.161 | 310 | 189 | 10 | 42 | 335 | 37 | 319 | 4.57e-14 | 72.8 |
| MS.gene61501.t1 | MTR_3g072380 | 24.859 | 177 | 129 | 3 | 11 | 186 | 12 | 185 | 8.13e-13 | 67.8 |
| MS.gene61501.t1 | MTR_2g038410 | 24.768 | 323 | 217 | 9 | 28 | 345 | 69 | 370 | 2.82e-12 | 67.4 |
| MS.gene61501.t1 | MTR_8g016090 | 25.275 | 182 | 132 | 3 | 8 | 186 | 163 | 343 | 8.22e-12 | 66.2 |
| MS.gene61501.t1 | MTR_6g005480 | 24.920 | 313 | 215 | 8 | 4 | 305 | 104 | 407 | 2.44e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61501.t1 | AT5G25400 | 81.686 | 344 | 63 | 0 | 2 | 345 | 6 | 349 | 0.0 | 598 |
| MS.gene61501.t1 | AT4G32390 | 82.029 | 345 | 61 | 1 | 2 | 345 | 6 | 350 | 0.0 | 593 |
| MS.gene61501.t1 | AT2G25520 | 82.558 | 344 | 58 | 1 | 2 | 345 | 6 | 347 | 0.0 | 593 |
| MS.gene61501.t1 | AT5G11230 | 79.710 | 345 | 69 | 1 | 2 | 345 | 6 | 350 | 0.0 | 569 |
| MS.gene61501.t1 | AT3G17430 | 45.427 | 328 | 177 | 2 | 9 | 335 | 7 | 333 | 4.66e-98 | 295 |
| MS.gene61501.t1 | AT3G17430 | 45.427 | 328 | 177 | 2 | 9 | 335 | 7 | 333 | 4.66e-98 | 295 |
| MS.gene61501.t1 | AT1G48230 | 46.334 | 341 | 169 | 3 | 9 | 336 | 7 | 346 | 1.35e-96 | 291 |
| MS.gene61501.t1 | AT3G14410 | 42.771 | 332 | 187 | 3 | 4 | 333 | 5 | 335 | 1.28e-82 | 254 |
| MS.gene61501.t1 | AT1G53660 | 41.390 | 331 | 183 | 6 | 6 | 334 | 9 | 330 | 2.30e-82 | 253 |
| MS.gene61501.t1 | AT1G53660 | 41.390 | 331 | 183 | 6 | 6 | 334 | 27 | 348 | 4.49e-82 | 253 |
| MS.gene61501.t1 | AT1G53660 | 42.434 | 304 | 164 | 6 | 33 | 334 | 2 | 296 | 2.09e-78 | 242 |
| MS.gene61501.t1 | AT1G48230 | 44.891 | 274 | 137 | 3 | 76 | 336 | 1 | 273 | 1.91e-74 | 232 |
| MS.gene61501.t1 | AT1G53660 | 42.449 | 245 | 131 | 5 | 91 | 334 | 1 | 236 | 1.77e-58 | 189 |
| MS.gene61501.t1 | AT1G53660 | 41.294 | 201 | 117 | 1 | 5 | 204 | 26 | 226 | 6.01e-51 | 170 |
| MS.gene61501.t1 | AT1G21870 | 23.810 | 315 | 230 | 5 | 21 | 330 | 22 | 331 | 1.26e-30 | 119 |
| MS.gene61501.t1 | AT3G11320 | 31.757 | 296 | 188 | 5 | 18 | 305 | 15 | 304 | 1.58e-30 | 118 |
| MS.gene61501.t1 | AT5G05820 | 32.095 | 296 | 187 | 5 | 18 | 305 | 15 | 304 | 4.85e-30 | 117 |
| MS.gene61501.t1 | AT1G77610 | 24.383 | 324 | 232 | 6 | 21 | 336 | 16 | 334 | 4.41e-29 | 115 |
| MS.gene61501.t1 | AT3G10290 | 30.392 | 306 | 197 | 8 | 9 | 305 | 53 | 351 | 4.15e-27 | 110 |
| MS.gene61501.t1 | AT5G04160 | 30.255 | 314 | 199 | 8 | 3 | 305 | 1 | 305 | 2.82e-26 | 106 |
| MS.gene61501.t1 | AT1G12500 | 28.065 | 310 | 211 | 6 | 3 | 305 | 48 | 352 | 1.26e-23 | 100 |
| MS.gene61501.t1 | AT1G06470 | 25.000 | 336 | 232 | 9 | 17 | 335 | 78 | 410 | 6.48e-23 | 99.0 |
| MS.gene61501.t1 | AT1G06470 | 25.000 | 336 | 232 | 9 | 17 | 335 | 78 | 410 | 6.48e-23 | 99.0 |
| MS.gene61501.t1 | AT1G06470 | 25.000 | 336 | 232 | 9 | 17 | 335 | 78 | 410 | 6.48e-23 | 99.0 |
| MS.gene61501.t1 | AT1G06470 | 25.000 | 336 | 232 | 9 | 17 | 335 | 78 | 410 | 6.48e-23 | 99.0 |
| MS.gene61501.t1 | AT2G28315 | 27.187 | 320 | 199 | 13 | 25 | 333 | 22 | 318 | 7.64e-19 | 86.7 |
| MS.gene61501.t1 | AT2G28315 | 28.276 | 290 | 181 | 12 | 25 | 303 | 22 | 295 | 2.20e-17 | 82.0 |
| MS.gene61501.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 73 | 331 | 9.14e-15 | 74.7 |
| MS.gene61501.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 73 | 331 | 9.14e-15 | 74.7 |
| MS.gene61501.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 52 | 310 | 9.74e-15 | 74.7 |
| MS.gene61501.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 52 | 310 | 9.74e-15 | 74.7 |
| MS.gene61501.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 52 | 310 | 9.74e-15 | 74.7 |
| MS.gene61501.t1 | AT1G06890 | 25.397 | 315 | 195 | 11 | 42 | 336 | 37 | 331 | 4.21e-13 | 70.1 |
| MS.gene61501.t1 | AT1G06890 | 25.397 | 315 | 195 | 11 | 42 | 336 | 37 | 331 | 4.31e-13 | 69.7 |
| MS.gene61501.t1 | AT1G06890 | 25.397 | 315 | 195 | 11 | 42 | 336 | 37 | 331 | 4.66e-13 | 69.7 |
| MS.gene61501.t1 | AT1G06890 | 25.397 | 315 | 195 | 11 | 42 | 336 | 37 | 331 | 4.66e-13 | 69.7 |
| MS.gene61501.t1 | AT5G33320 | 24.272 | 309 | 220 | 7 | 4 | 305 | 98 | 399 | 8.23e-11 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGTTACACTTCAGCTTA+TGG | 0.214354 | 8.3:+13187937 | MS.gene61501:CDS |
| CCGATTAATTTGATTGGTTA+TGG | 0.225210 | 8.3:+13188304 | MS.gene61501:CDS |
| ATTCTCGTGGTCGGTGATTA+AGG | 0.249502 | 8.3:+13188270 | MS.gene61501:CDS |
| CACTTTACTCGCTTTCGTTA+TGG | 0.286530 | 8.3:+13187720 | MS.gene61501:CDS |
| GGTGTTGCTGTTGCTGCTTA+TGG | 0.298598 | 8.3:+13187893 | MS.gene61501:CDS |
| CCTGTTGCTGTTTATTCAAT+TGG | 0.300195 | 8.3:+13187806 | MS.gene61501:CDS |
| CGATTAATTTGATTGGTTAT+GGG | 0.330326 | 8.3:+13188305 | MS.gene61501:CDS |
| TTCGAAGTTGCAGGCTCTTA+AGG | 0.341248 | 8.3:+13188360 | MS.gene61501:CDS |
| AAGATAAATATACGCAGAAT+TGG | 0.353850 | 8.3:-13187747 | None:intergenic |
| GTTACACCGATTAATTTGAT+TGG | 0.366012 | 8.3:+13188298 | MS.gene61501:CDS |
| GCTTTGACTATGAATGTTGC+TGG | 0.377294 | 8.3:+13188220 | MS.gene61501:CDS |
| GGATAACTCAAGTTTCCATT+TGG | 0.385544 | 8.3:+13188117 | MS.gene61501:CDS |
| TTCCGATGGCGTTGTGAAGA+AGG | 0.398342 | 8.3:+13187460 | MS.gene61501:CDS |
| TTATAATCATTCGAAGTTGC+AGG | 0.406175 | 8.3:+13188351 | MS.gene61501:CDS |
| TTACATTGCGCCGTGTTGTT+TGG | 0.410506 | 8.3:+13188048 | MS.gene61501:CDS |
| GAATGTTGCTGGGGTTGTTA+AGG | 0.411142 | 8.3:+13188231 | MS.gene61501:CDS |
| ATGTAATACAACGAAGTAAT+GGG | 0.413044 | 8.3:-13188031 | None:intergenic |
| GTGAAGCGAAATTTGATACT+TGG | 0.421132 | 8.3:+13187915 | MS.gene61501:CDS |
| TCGACGAGTTGAATCAGTTC+TGG | 0.421300 | 8.3:-13188480 | None:intergenic |
| CATACACCTACGTCGCAATC+TGG | 0.421498 | 8.3:+13187492 | MS.gene61501:CDS |
| AACAGCAACACCAAGAGAAA+TGG | 0.430794 | 8.3:-13187882 | None:intergenic |
| CCATAACCAATCAAATTAAT+CGG | 0.432294 | 8.3:-13188304 | None:intergenic |
| CCAATTGAATAAACAGCAAC+AGG | 0.439135 | 8.3:-13187806 | None:intergenic |
| AATATGATTTCCATTTCTCT+TGG | 0.447676 | 8.3:+13187872 | MS.gene61501:CDS |
| CTTTGACTATGAATGTTGCT+GGG | 0.457141 | 8.3:+13188221 | MS.gene61501:CDS |
| CTCAAATCTGTTGTTCCAAT+CGG | 0.464601 | 8.3:+13187695 | MS.gene61501:CDS |
| AGATCGCGTGACATTGAAAC+AGG | 0.469171 | 8.3:-13187668 | None:intergenic |
| TAGATCGTAAGATGTACAAT+TGG | 0.478800 | 8.3:+13187558 | MS.gene61501:CDS |
| TTGAGCCTTCTTCTGCGTCT+CGG | 0.479012 | 8.3:-13188386 | None:intergenic |
| TAATTTGATTGGTTATGGGT+TGG | 0.488621 | 8.3:+13188309 | MS.gene61501:CDS |
| TTGCTGGGGTTGTTAAGGAT+TGG | 0.496578 | 8.3:+13188236 | MS.gene61501:CDS |
| GTATTTGTTGTAAACGATAA+CGG | 0.498137 | 8.3:-13187531 | None:intergenic |
| AGCGAGTAAAGTGCACCGAT+TGG | 0.499200 | 8.3:-13187710 | None:intergenic |
| AATGTAATACAACGAAGTAA+TGG | 0.505644 | 8.3:-13188032 | None:intergenic |
| TGAAGAGGCTGGAAGGTTGT+TGG | 0.507877 | 8.3:+13188417 | MS.gene61501:CDS |
| TGAATCATAGTTAGAGAGAT+CGG | 0.517090 | 8.3:-13187587 | None:intergenic |
| GGCTTCCGAGACGCAGAAGA+AGG | 0.521970 | 8.3:+13188381 | MS.gene61501:CDS |
| AGGTTGTTGGAACAGAGAGA+TGG | 0.527055 | 8.3:+13188430 | MS.gene61501:CDS |
| CAGAGAGATGGAGAAGGGAC+TGG | 0.531231 | 8.3:+13188442 | MS.gene61501:CDS |
| GAATCATAGTTAGAGAGATC+GGG | 0.535967 | 8.3:-13187586 | None:intergenic |
| TTGTTGAGTATCCTTCATTG+AGG | 0.539802 | 8.3:+13188095 | MS.gene61501:CDS |
| TGTTGAGTATCCTTCATTGA+GGG | 0.542766 | 8.3:+13188096 | MS.gene61501:CDS |
| CAACAGAGTGATGAAGAGGC+TGG | 0.548342 | 8.3:+13188406 | MS.gene61501:CDS |
| CTTGAGTTATCCCTCAATGA+AGG | 0.550863 | 8.3:-13188106 | None:intergenic |
| TGAAGCGAAATTTGATACTT+GGG | 0.552919 | 8.3:+13187916 | MS.gene61501:CDS |
| GTTGATTGCATTCTCGTGGT+CGG | 0.553496 | 8.3:+13188261 | MS.gene61501:CDS |
| GGCTCAACAGAGTGATGAAG+AGG | 0.559642 | 8.3:+13188402 | MS.gene61501:CDS |
| ATAGTTAGAGAGATCGGGTA+AGG | 0.564533 | 8.3:-13187581 | None:intergenic |
| GAGATGGAGAAGGGACTGGA+AGG | 0.571557 | 8.3:+13188446 | MS.gene61501:CDS |
| AACCTTCTTCACAACGCCAT+CGG | 0.572106 | 8.3:-13187462 | None:intergenic |
| CTCTCTAACTATGATTCACA+TGG | 0.574369 | 8.3:+13187592 | MS.gene61501:CDS |
| TTTGTTGGTTGGGAAGACAT+CGG | 0.594533 | 8.3:+13188198 | MS.gene61501:CDS |
| TTGGAACAGAGAGATGGAGA+AGG | 0.602800 | 8.3:+13188436 | MS.gene61501:CDS |
| AGAGTGATGAAGAGGCTGGA+AGG | 0.603959 | 8.3:+13188410 | MS.gene61501:CDS |
| GGTTGTTGATTGCATTCTCG+TGG | 0.604485 | 8.3:+13188257 | MS.gene61501:CDS |
| GAAGATCCAGATTGCGACGT+AGG | 0.612548 | 8.3:-13187498 | None:intergenic |
| TGGAACAGAGAGATGGAGAA+GGG | 0.630504 | 8.3:+13188437 | MS.gene61501:CDS |
| GGATACTCAACAATAAGCCA+AGG | 0.631347 | 8.3:-13188085 | None:intergenic |
| AAACGATAACGGTGAAGCTG+AGG | 0.632551 | 8.3:-13187520 | None:intergenic |
| TTGCGACGTAGGTGTATGAG+AGG | 0.648256 | 8.3:-13187487 | None:intergenic |
| TTTGACTATGAATGTTGCTG+GGG | 0.655153 | 8.3:+13188222 | MS.gene61501:CDS |
| GAAGCGAAATTTGATACTTG+GGG | 0.703107 | 8.3:+13187917 | MS.gene61501:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGATAAATATACGCAGAAT+TGG | - | chr8.3:13187750-13187769 | None:intergenic | 25.0% |
| ! | AATATGATTTCCATTTCTCT+TGG | + | chr8.3:13187872-13187891 | MS.gene61501:CDS | 25.0% |
| ! | AATGTAATACAACGAAGTAA+TGG | - | chr8.3:13188035-13188054 | None:intergenic | 25.0% |
| ! | ATGTAATACAACGAAGTAAT+GGG | - | chr8.3:13188034-13188053 | None:intergenic | 25.0% |
| ! | CCATAACCAATCAAATTAAT+CGG | - | chr8.3:13188307-13188326 | None:intergenic | 25.0% |
| !! | AGATTTTGCTTAATTCTAAG+GGG | + | chr8.3:13187996-13188015 | MS.gene61501:CDS | 25.0% |
| !! | ATTTGGATTTCGCAATTTTT+GGG | + | chr8.3:13188134-13188153 | MS.gene61501:CDS | 25.0% |
| !! | CAGATTTTGCTTAATTCTAA+GGG | + | chr8.3:13187995-13188014 | MS.gene61501:CDS | 25.0% |
| !! | CGATTAATTTGATTGGTTAT+GGG | + | chr8.3:13188305-13188324 | MS.gene61501:CDS | 25.0% |
| !! | TCAGATTTTGCTTAATTCTA+AGG | + | chr8.3:13187994-13188013 | MS.gene61501:CDS | 25.0% |
| !!! | GTATTTGTTGTAAACGATAA+CGG | - | chr8.3:13187534-13187553 | None:intergenic | 25.0% |
| CAAAAATTGCGAAATCCAAA+TGG | - | chr8.3:13188135-13188154 | None:intergenic | 30.0% | |
| TAGATCGTAAGATGTACAAT+TGG | + | chr8.3:13187558-13187577 | MS.gene61501:CDS | 30.0% | |
| TGAAGCGAAATTTGATACTT+GGG | + | chr8.3:13187916-13187935 | MS.gene61501:CDS | 30.0% | |
| TGAATCATAGTTAGAGAGAT+CGG | - | chr8.3:13187590-13187609 | None:intergenic | 30.0% | |
| TTATAATCATTCGAAGTTGC+AGG | + | chr8.3:13188351-13188370 | MS.gene61501:CDS | 30.0% | |
| ! | CATTTGGATTTCGCAATTTT+TGG | + | chr8.3:13188133-13188152 | MS.gene61501:CDS | 30.0% |
| ! | CCGATTAATTTGATTGGTTA+TGG | + | chr8.3:13188304-13188323 | MS.gene61501:CDS | 30.0% |
| ! | GTTACACCGATTAATTTGAT+TGG | + | chr8.3:13188298-13188317 | MS.gene61501:CDS | 30.0% |
| ! | TAATTTGATTGGTTATGGGT+TGG | + | chr8.3:13188309-13188328 | MS.gene61501:CDS | 30.0% |
| !!! | GGGTTTTAAGAATGAAACTA+TGG | + | chr8.3:13187847-13187866 | MS.gene61501:CDS | 30.0% |
| !!! | GGTGTTTTGTTTAAGAAAGA+GGG | + | chr8.3:13187827-13187846 | MS.gene61501:CDS | 30.0% |
| !!! | TGGTGTTTTGTTTAAGAAAG+AGG | + | chr8.3:13187826-13187845 | MS.gene61501:CDS | 30.0% |
| CCAATTGAATAAACAGCAAC+AGG | - | chr8.3:13187809-13187828 | None:intergenic | 35.0% | |
| CTCAAATCTGTTGTTCCAAT+CGG | + | chr8.3:13187695-13187714 | MS.gene61501:CDS | 35.0% | |
| CTCTCTAACTATGATTCACA+TGG | + | chr8.3:13187592-13187611 | MS.gene61501:CDS | 35.0% | |
| CTTTGACTATGAATGTTGCT+GGG | + | chr8.3:13188221-13188240 | MS.gene61501:CDS | 35.0% | |
| GAAGCGAAATTTGATACTTG+GGG | + | chr8.3:13187917-13187936 | MS.gene61501:CDS | 35.0% | |
| GAATCATAGTTAGAGAGATC+GGG | - | chr8.3:13187589-13187608 | None:intergenic | 35.0% | |
| GACAAAAACACCAAACAACA+CGG | - | chr8.3:13188061-13188080 | None:intergenic | 35.0% | |
| GGATAACTCAAGTTTCCATT+TGG | + | chr8.3:13188117-13188136 | MS.gene61501:CDS | 35.0% | |
| GTGAAGCGAAATTTGATACT+TGG | + | chr8.3:13187915-13187934 | MS.gene61501:CDS | 35.0% | |
| TGTTGAGTATCCTTCATTGA+GGG | + | chr8.3:13188096-13188115 | MS.gene61501:CDS | 35.0% | |
| TTGTTGAGTATCCTTCATTG+AGG | + | chr8.3:13188095-13188114 | MS.gene61501:CDS | 35.0% | |
| TTTGACTATGAATGTTGCTG+GGG | + | chr8.3:13188222-13188241 | MS.gene61501:CDS | 35.0% | |
| !! | CCTGTTGCTGTTTATTCAAT+TGG | + | chr8.3:13187806-13187825 | MS.gene61501:CDS | 35.0% |
| !! | GAATCTTGCTGTGTTTTTGT+TGG | + | chr8.3:13188183-13188202 | MS.gene61501:CDS | 35.0% |
| !! | TTGCTGTGTTTTTGTTGGTT+GGG | + | chr8.3:13188188-13188207 | MS.gene61501:CDS | 35.0% |
| AACAGCAACACCAAGAGAAA+TGG | - | chr8.3:13187885-13187904 | None:intergenic | 40.0% | |
| ATAGTTAGAGAGATCGGGTA+AGG | - | chr8.3:13187584-13187603 | None:intergenic | 40.0% | |
| CACTTTACTCGCTTTCGTTA+TGG | + | chr8.3:13187720-13187739 | MS.gene61501:CDS | 40.0% | |
| CTTGAGTTATCCCTCAATGA+AGG | - | chr8.3:13188109-13188128 | None:intergenic | 40.0% | |
| GCTTTGACTATGAATGTTGC+TGG | + | chr8.3:13188220-13188239 | MS.gene61501:CDS | 40.0% | |
| GGATACTCAACAATAAGCCA+AGG | - | chr8.3:13188088-13188107 | None:intergenic | 40.0% | |
| ! | TTTGTTGGTTGGGAAGACAT+CGG | + | chr8.3:13188198-13188217 | MS.gene61501:CDS | 40.0% |
| !! | CTTGCTGTGTTTTTGTTGGT+TGG | + | chr8.3:13188187-13188206 | MS.gene61501:CDS | 40.0% |
| !! | TGGTGTTTTTGTCTGTTCCT+TGG | + | chr8.3:13188068-13188087 | MS.gene61501:CDS | 40.0% |
| !!! | TGCTTTTGAAGCTACACGTT+TGG | + | chr8.3:13187964-13187983 | MS.gene61501:CDS | 40.0% |
| AACCTTCTTCACAACGCCAT+CGG | - | chr8.3:13187465-13187484 | None:intergenic | 45.0% | |
| AGATCGCGTGACATTGAAAC+AGG | - | chr8.3:13187671-13187690 | None:intergenic | 45.0% | |
| AGGTTGTTGGAACAGAGAGA+TGG | + | chr8.3:13188430-13188449 | MS.gene61501:CDS | 45.0% | |
| ATTCTCGTGGTCGGTGATTA+AGG | + | chr8.3:13188270-13188289 | MS.gene61501:CDS | 45.0% | |
| GAATGTTGCTGGGGTTGTTA+AGG | + | chr8.3:13188231-13188250 | MS.gene61501:CDS | 45.0% | |
| GTTGATTGCATTCTCGTGGT+CGG | + | chr8.3:13188261-13188280 | MS.gene61501:CDS | 45.0% | |
| TGGAACAGAGAGATGGAGAA+GGG | + | chr8.3:13188437-13188456 | MS.gene61501:CDS | 45.0% | |
| TTCGAAGTTGCAGGCTCTTA+AGG | + | chr8.3:13188360-13188379 | MS.gene61501:CDS | 45.0% | |
| TTGCTGGGGTTGTTAAGGAT+TGG | + | chr8.3:13188236-13188255 | MS.gene61501:CDS | 45.0% | |
| TTGGAACAGAGAGATGGAGA+AGG | + | chr8.3:13188436-13188455 | MS.gene61501:CDS | 45.0% | |
| ! | AAACGATAACGGTGAAGCTG+AGG | - | chr8.3:13187523-13187542 | None:intergenic | 45.0% |
| ! | GGGTGTTACACTTCAGCTTA+TGG | + | chr8.3:13187937-13187956 | MS.gene61501:CDS | 45.0% |
| ! | GGTTGTTGATTGCATTCTCG+TGG | + | chr8.3:13188257-13188276 | MS.gene61501:CDS | 45.0% |
| ! | TTACATTGCGCCGTGTTGTT+TGG | + | chr8.3:13188048-13188067 | MS.gene61501:CDS | 45.0% |
| !!! | GGTTATGGGTTGGCGTTTTT+GGG | + | chr8.3:13188319-13188338 | MS.gene61501:CDS | 45.0% |
| !!! | GTTATGGGTTGGCGTTTTTG+GGG | + | chr8.3:13188320-13188339 | MS.gene61501:CDS | 45.0% |
| !!! | TGGTTATGGGTTGGCGTTTT+TGG | + | chr8.3:13188318-13188337 | MS.gene61501:CDS | 45.0% |
| !!! | TTATGGGTTGGCGTTTTTGG+GGG | + | chr8.3:13188321-13188340 | MS.gene61501:CDS | 45.0% |
| AGAGTGATGAAGAGGCTGGA+AGG | + | chr8.3:13188410-13188429 | MS.gene61501:CDS | 50.0% | |
| CAACAGAGTGATGAAGAGGC+TGG | + | chr8.3:13188406-13188425 | MS.gene61501:CDS | 50.0% | |
| CATACACCTACGTCGCAATC+TGG | + | chr8.3:13187492-13187511 | MS.gene61501:CDS | 50.0% | |
| GAAGATCCAGATTGCGACGT+AGG | - | chr8.3:13187501-13187520 | None:intergenic | 50.0% | |
| GGCTCAACAGAGTGATGAAG+AGG | + | chr8.3:13188402-13188421 | MS.gene61501:CDS | 50.0% | |
| TGAAGAGGCTGGAAGGTTGT+TGG | + | chr8.3:13188417-13188436 | MS.gene61501:CDS | 50.0% | |
| TTCCGATGGCGTTGTGAAGA+AGG | + | chr8.3:13187460-13187479 | MS.gene61501:CDS | 50.0% | |
| TTGAGCCTTCTTCTGCGTCT+CGG | - | chr8.3:13188389-13188408 | None:intergenic | 50.0% | |
| TTGCGACGTAGGTGTATGAG+AGG | - | chr8.3:13187490-13187509 | None:intergenic | 50.0% | |
| ! | AGCGAGTAAAGTGCACCGAT+TGG | - | chr8.3:13187713-13187732 | None:intergenic | 50.0% |
| !! | GGTGTTGCTGTTGCTGCTTA+TGG | + | chr8.3:13187893-13187912 | MS.gene61501:CDS | 50.0% |
| CAGAGAGATGGAGAAGGGAC+TGG | + | chr8.3:13188442-13188461 | MS.gene61501:CDS | 55.0% | |
| GAGATGGAGAAGGGACTGGA+AGG | + | chr8.3:13188446-13188465 | MS.gene61501:CDS | 55.0% | |
| GGCTTCCGAGACGCAGAAGA+AGG | + | chr8.3:13188381-13188400 | MS.gene61501:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13187452 | 13188489 | 13187452 | ID=MS.gene61501 |
| chr8.3 | mRNA | 13187452 | 13188489 | 13187452 | ID=MS.gene61501.t1;Parent=MS.gene61501 |
| chr8.3 | exon | 13187452 | 13188489 | 13187452 | ID=MS.gene61501.t1.exon1;Parent=MS.gene61501.t1 |
| chr8.3 | CDS | 13187452 | 13188489 | 13187452 | ID=cds.MS.gene61501.t1;Parent=MS.gene61501.t1 |
| Gene Sequence |
| Protein sequence |
