AlfalfaGEDB | MS.gene61580

M. sativa cultivar XinJiangDaYe / MS.gene61580

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0008150 GO:0008152 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114
PFAM: PF00394.25 PF07731.17 PF07732.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61580.t1	XP_003605947.1	96.7	538	18	0	1	538	1	538	0.00E+00	1092.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61580.t1	Q00624	55.2	531	228	4	10	531	11	540	2.3e-173	610.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61580.t1	G7JDL2	96.7	538	18	0	1	538	1	538	0.0e+00	1092.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052143	MS.gene61580	0.801383	9.24E-49	-1.69E-46
MS.gene052308	MS.gene61580	0.80482	1.80E-49	-1.69E-46
MS.gene053173	MS.gene61580	0.812462	4.19E-51	-1.69E-46
MS.gene053348	MS.gene61580	0.806275	8.90E-50	-1.69E-46
MS.gene054551	MS.gene61580	0.812384	4.36E-51	-1.69E-46
MS.gene056041	MS.gene61580	0.818926	1.52E-52	-1.69E-46
MS.gene056042	MS.gene61580	0.806076	9.80E-50	-1.69E-46
MS.gene06093	MS.gene61580	0.831235	1.87E-55	-1.69E-46
MS.gene061099	MS.gene61580	0.820048	8.43E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene61580.t1	MTR_4g049390	96.654	538	18	0	1	538	1	538	1075
MS.gene61580.t1	MTR_4g048350	94.981	538	26	1	1	538	1	537	1041
MS.gene61580.t1	MTR_2g088080	88.054	519	62	0	18	536	21	539	944
MS.gene61580.t1	MTR_2g088080	86.900	458	60	0	79	536	1	458	821
MS.gene61580.t1	MTR_4g075690	71.751	531	142	2	7	537	17	539	806
MS.gene61580.t1	MTR_1g026410	72.693	531	145	0	7	537	9	539	803
MS.gene61580.t1	MTR_3g115050	69.754	529	160	0	9	537	12	540	795
MS.gene61580.t1	MTR_4g132320	71.508	537	150	1	3	536	4	540	779
MS.gene61580.t1	MTR_8g479390	60.735	517	200	2	22	537	26	540	662
MS.gene61580.t1	MTR_4g075690	70.843	439	120	2	7	445	17	447	659

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene61580.t1	AT1G76160	71.321	530	151	1	7	536	8	536	802
MS.gene61580.t1	AT4G22010	70.732	533	154	2	7	537	5	537	800
MS.gene61580.t1	AT1G41830	67.736	530	170	1	8	537	10	538	769
MS.gene61580.t1	AT1G21850	67.420	531	171	2	7	537	9	537	765
MS.gene61580.t1	AT1G21860	66.415	530	176	2	8	537	10	537	753
MS.gene61580.t1	AT4G38420	63.806	536	188	3	8	537	11	546	715
MS.gene61580.t1	AT4G28090	59.848	528	208	4	9	533	11	537	668
MS.gene61580.t1	AT5G66920	57.692	520	218	1	18	537	28	545	636
MS.gene61580.t1	AT4G38420	62.633	471	170	3	8	472	11	481	613
MS.gene61580.t1	AT4G37160	54.089	538	238	3	4	533	1	537	587

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Find 145 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTGAATGTGTAAGCAT+TGG	0.510570	4.1:+48339009	None:intergenic
AACGGACCAATCGATTTCAG+TGG	0.617391	4.1:+48338292	None:intergenic
AACTCAGCAGCAAGTGTTTC+TGG	0.200322	4.1:-48338335	MS.gene61580:CDS
AAGATAACCACCGCCACCGG+TGG	0.558909	4.1:+48337305	None:intergenic
AAGGCAGCAGGAGGTTATGG+CGG	0.659210	4.1:-48339286	MS.gene61580:CDS
AAGTAATCAGCTAGTTTGAG+TGG	0.592921	4.1:+48337372	None:intergenic
AAGTTCTGTCCTGGAGAGAT+TGG	0.452707	4.1:+48339376	None:intergenic
AATACACTCTAAGATAAAAT+TGG	0.336664	4.1:+48336508	None:intergenic
AATATGGTGAAATCTCCGGA+TGG	0.697908	4.1:+48339217	None:intergenic
AATTCTGCTCCAATTATCAA+TGG	0.480816	4.1:-48337444	MS.gene61580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCTGCTCCAATTATCAA+TGG	-	chr4.1:48339640-48339659	MS.gene61580:intron	30.0%
ATTCGTCGAAATTATTTGAG+AGG	+	chr4.1:48337356-48337375	None:intergenic	30.0%
ATTGTTTGTAACGAGAAAAG+AGG	+	chr4.1:48338322-48338341	None:intergenic	30.0%
ATTTATTGGAATTTGCAGGA+TGG	-	chr4.1:48340106-48340125	MS.gene61580:intron	30.0%
CTTCAAGTAAAAGATCAGAT+TGG	-	chr4.1:48337741-48337760	MS.gene61580:intron	30.0%
GACCGTCAATATATTCTTAA+GGG	+	chr4.1:48337260-48337279	None:intergenic	30.0%
GGATATTTATTGGAATTTGC+AGG	-	chr4.1:48340102-48340121	MS.gene61580:intron	30.0%
GTTTATCATTCCATAATGGT+AGG	+	chr4.1:48339596-48339615	None:intergenic	30.0%
TAAATCTATTAGAATGAGGG+CGG	-	chr4.1:48338410-48338429	MS.gene61580:CDS	30.0%
TATGGAGATATTTATCCACT+TGG	-	chr4.1:48336527-48336546	MS.gene61580:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	48336425	48340681	48336425	ID=MS.gene61580
chr4.1	mRNA	48336425	48340681	48336425	ID=MS.gene61580.t1;Parent=MS.gene61580
chr4.1	exon	48340544	48340681	48340544	ID=MS.gene61580.t1.exon1;Parent=MS.gene61580.t1
chr4.1	CDS	48340544	48340681	48340544	ID=cds.MS.gene61580.t1;Parent=MS.gene61580.t1
chr4.1	exon	48340222	48340331	48340222	ID=MS.gene61580.t1.exon2;Parent=MS.gene61580.t1
chr4.1	CDS	48340222	48340331	48340222	ID=cds.MS.gene61580.t1;Parent=MS.gene61580.t1
chr4.1	exon	48339186	48339456	48339186	ID=MS.gene61580.t1.exon3;Parent=MS.gene61580.t1
chr4.1	CDS	48339186	48339456	48339186	ID=cds.MS.gene61580.t1;Parent=MS.gene61580.t1
chr4.1	exon	48339002	48339104	48339002	ID=MS.gene61580.t1.exon4;Parent=MS.gene61580.t1
chr4.1	CDS	48339002	48339104	48339002	ID=cds.MS.gene61580.t1;Parent=MS.gene61580.t1
chr4.1	exon	48338272	48338617	48338272	ID=MS.gene61580.t1.exon5;Parent=MS.gene61580.t1
chr4.1	CDS	48338272	48338617	48338272	ID=cds.MS.gene61580.t1;Parent=MS.gene61580.t1
chr4.1	exon	48337192	48337557	48337192	ID=MS.gene61580.t1.exon6;Parent=MS.gene61580.t1
chr4.1	CDS	48337192	48337557	48337192	ID=cds.MS.gene61580.t1;Parent=MS.gene61580.t1
chr4.1	exon	48336904	48336982	48336904	ID=MS.gene61580.t1.exon7;Parent=MS.gene61580.t1
chr4.1	CDS	48336904	48336982	48336904	ID=cds.MS.gene61580.t1;Parent=MS.gene61580.t1
chr4.1	exon	48336425	48336628	48336425	ID=MS.gene61580.t1.exon8;Parent=MS.gene61580.t1
chr4.1	CDS	48336425	48336628	48336425	ID=cds.MS.gene61580.t1;Parent=MS.gene61580.t1

Gene Sequence

>MS.gene61580

ATGGGTTACTTCAAACAATGTTCTGTCTTGTTGTTGGTAGTGTTCCTTGTTGCATGTGCAAATGGAGAAGATCCTTATAGGTTTTATAATTGGAATGTTACATATGGAGATATTTATCCACTTGGAGTTAAACAACAGGTATTTTGTTTTCCATTTTTTTGAAGAAGAGGTATTTTGTTTTTCTTAATGTTCTTGTTGCTGTTTTTTGAATTTTCAATTGTTTTTTATTTCATAACATTGAGTTTTACTTCTTTCTTATAAATGAAATTTGGATGTTTCTTCAAATTATTAGCGGTGTCGGCGTGTCAGTGTTCATATATTCATTTCTATATGGTTTGTGAAATGTGCAGGGGATTTTGATAAATGGACAATTTCCAGGGCCACAGATTGAGTCAGTGACTAATGATAATTTGATTATCAATGTTTTTAATAGCTTGGATGAACCTTTCCTCATTTCTTGGTTAGTCTTGTTTCTTGTTTATTCCACTGGTTAAAGCATTAGTTGCATAAAATACTTTGTAGACAGTAATATATTTTTTTTCTCCTTTTTTAGCACAATTTATTGGAGTGAATTGTATGGTAATTTTAGTAGATCTAGATAATTTTGAAAACAGCTGGACAATGCATGGATGCGAGTCGATCACCAATTTAATCTTTGAATTTCGACTTAATCTCGGACATGGATATAAGGTTGGAGTGAGGGAGTTAAGCAGTTAAGTGATTACGAGATTGAGTGCTTTTTTTTTTTTGAAGGAACGAGATTGAGTGCTTGATCCTCGTCTTAAACTAAAATACTAACAACACTAATATTTATTTCTGGAGAGCATTGGTGCCCTTAAGAATATATTGACGGTCCATAAACAAATTAATTTGGTCTCTGAAATTTATGATATTCTTAATGATTACTTAAATTGAAAACCCTCGAGTCCCTCTCAAATAATTTCGACGAATAAATCGAACCATCCTCAAAGGAACAATACAATCGAGGATTTCAATTTCATAATTATTTTTGAATTTCGTTAATTTCATAGACCAACCTGCCTAACACCTCTGATTTTAAAGACTAAATTGGTAGTCCGCAAGTATAAAAACTGACGTGATTACATAAATTAGTGAAAACCAAACAAATAAGTAAATAACAATATCAGGACTAAGACTATAATAATGTACATATTCTACCATCCATGTTGAAAATTCAGTGTTTTTAGATTATGTAATTCTATAGGAATGGAGTGCTGCAGAGGAGAAACTCATGGCAGGATGGAGTGTATGGTACGAATTGTCCAATCTCTCCAGGACAGAACTTCACTTATATTCTTCAAGTAAAAGATCAGATTGGTAGCTATTTCTACTTTCCTTCCCTTGCATTCCACAAGGCAGCAGGAGGTTATGGCGGTTTCACAATCGCTAGTCGCTCTGTGATTCCTGTACCTTTTGATCCTCCATCCGGAGATTTCACCATATTGGCAGGAGATTGGTACAAAAGAAATCACACAGTTAAGTTTTAACTAAGAAACAACCTTCAATGTTTAAGAAATCTTGAATAAATCATGACTTAATTTGTGTTTATTTTGCAGGATTTGAGGGCCGTTTTAGATAGCGGAAGTGATCTTCCTTTCCCTGATGGACTTGTCATCAATGGCCGCGGTTCCAATGCTTACACATTCACTGTTGATCAAGGTATACATGAATTTCAACCAATTTGTTTACCTGAAATTTGATACCATAGCAGATGAAGCCGATTTTGTTTTGTATGACTACTAATCGGTTGTTAGATATGTTTTTCGAGGGAATTGAATCCACAATCCCTTATCTCTTCAACGGTTATGTTCCTAGATCCAGCTGATATTAGTTAACCACTAGCCTGTAGACGGCTACTGACATGCCCGTCTACCCTCTTTTCTCGTTACAAACAATAAAGCTACAAAATTTTATGCGATTATTTAAAAAAATTCAGTTTGTTGAGATACTGTTGCGAGATAAAATAAATCTATTAGAATGAGGGCGGAAGAGACACATGTACGTAAAATATATAGCACTGATAAAGTGCTTGATTGTTTGCAGGGAAGACTTACAGATTCCGGATATCAAATGTGGGGATTAGCACTTCCATCAATTTTAGAATCCAAGGGCATAAGATGAAGCTTGTTGAGGTGGAAGGAAGTCACACTCTGCAAAACACTTACGACTCACTTGACATTCATTTGGGGCAGACGTATTCTGTATTGGTTACTGCTGATCAACCACCAAATGACTACTACATTGTCGTCACAACAAGGTTCACCTCACAGGTGCTGAATGCTTCATCCATTCTTCATTACAGTAACTCAGCAGCAAGTGTTTCTGGTCCTCTTCCTGGTGGACCAACCACTGAAATCGATTGGTCCGTTGAACAAGCTCGGTCTCTAAGGTATTTATTTATTATTTCAATTTCATAGTTAAATGATACGTGATTCAGCGATTTTGCAGATTGCAGAGTAGTAAATACTTTTTTTTTTCGATCGATAAGAATTGAACTCGGTAGTACTTAGGGGCTTACAACAATCATACACACAACGCACCAATCACTTGCACTAGACCTCGGTGGTAGTTAAGTAAATTAGAAATGCTAAACATAGCAAGAGAATTATTCACGAATCCATTGCGACATAATGTGATAGGCTGTTCAATACCACTGCTGAGCATGTTTTCCATTATTTCCGGAACATTGTGCACACTTAACTCATAATAATATCCTTCGCAATTCGCGGTGTATAGCATCGCTCTAAGCAAATACTTGTAAGTTGTATACTCATTTTTATCTAGTCTTGTACTACTTCCAAAACGAATTATAAGCAAACTAATTCGCAGCAGTTACGGCTGTTAGTTAATCATATCTAACATACGCAATTTCAAAGAAAATAATTGTTAGACATATAAGCAAACTAGTTCTTGAATATAAATTACTGCACATATCGGTGTCCAATACTGACAATCGTTGGACACCAAACACACTTTCGATCTCAGGTTTCCGTGTTTCATAGGAATTTATACCGCCAAACTTTTTTTTTTTTTGTATATATATGATATCTGAAATATATGTTACTCTCCGATGCTGACTTTAACAAATGATTAATTGAATCAGGAGGAATCTTACAGCAAGTGGACCAAGACCAAATCCACAAGGAACCTACCATTATGGAATGATAAACACAACTCGTACAATTAGACTTCAAAATTCTGCTCCAATTATCAATGGAAAACAAAGATATGCTGTCAATAGTGTGTCATTCATCCCTGCTGATACACCACTCAAACTAGCTGATTACTTCAAGATCGAAGGGGTGTTTTCACTTGGAAGTATCCCGGACAACCCCACCGGTGGCGGTGGTTATCTTCAGACTTCTGTCATGGCGGCCGATTTTCGAGGTTTTGTGGAGGTTGTGTTTGAGAATCCTGAAGATACTTTGCAATCATGGCACATTGATGGACATAGCTTCTTTGTAGTAGGGTAAGTTCACTCAACTTCTTTCATGTGAATTTTATACTTTAATCAGTCAGAATTGAAATATTATTTTATTTTTCCCGTAAACCATGTATCCTCCATGCGCAACATGATCGAAATATTGATTTGTCTCAAACTATTTGTTACTTTAGAATATTGAGAATATTAATTATATTTTCCATTCTGATAATATGGATATTTATTGGAATTTGCAGGATGGATGGAGGACAATGGTCAGCTGCAAGCAGACTAAATTACAACTTAAGAGATACAATTGCTCGTAGTACAGTTCAGGTAAATCAAGTTCGCTATCCATTGTGATAAGGCTTAATGCTTTCTTTTGTGTATATATAACTTTAATATTTATAAGGGAACCTTTGGTTTGTAGATGATGCTATTTCCATTGACATATGATTTATGATGCACCTCTAATACTCATTCATATTTTTTTTTAAAATAGTTAATAATACTTATTTTACATATGACATATGATTTATGATGCATATTACTGATAATCATTTTGGTCTTTAACATGATTAAGGGTTTGTCTTTCTATGTTTCTTACACAGGTGTATCCAAAGTCATGGACTGCACTGTACATGCCATTGGATAATGTGGGAATGTGGAATGTGAGGTCTGAGAATTGGGCAAGACAGTATTTGGGCCACCAATTTTATCTTAGAGTGTATTCCCCTGCAAATTCATCGAGAGATGAGTACCCTATTCCAAGCAATGCACTTCAGTGTGGCAAGGCAGTGGGTCACCACAATTAG

Protein sequence

>MS.gene61580.t1

MGYFKQCSVLLLVVFLVACANGEDPYRFYNWNVTYGDIYPLGVKQQGILINGQFPGPQIESVTNDNLIINVFNSLDEPFLISWNGVLQRRNSWQDGVYGTNCPISPGQNFTYILQVKDQIGSYFYFPSLAFHKAAGGYGGFTIASRSVIPVPFDPPSGDFTILAGDWYKRNHTDLRAVLDSGSDLPFPDGLVINGRGSNAYTFTVDQGKTYRFRISNVGISTSINFRIQGHKMKLVEVEGSHTLQNTYDSLDIHLGQTYSVLVTADQPPNDYYIVVTTRFTSQVLNASSILHYSNSAASVSGPLPGGPTTEIDWSVEQARSLRRNLTASGPRPNPQGTYHYGMINTTRTIRLQNSAPIINGKQRYAVNSVSFIPADTPLKLADYFKIEGVFSLGSIPDNPTGGGGYLQTSVMAADFRGFVEVVFENPEDTLQSWHIDGHSFFVVGMDGGQWSAASRLNYNLRDTIARSTVQVYPKSWTALYMPLDNVGMWNVRSENWARQYLGHQFYLRVYSPANSSRDEYPIPSNALQCGKAVGHHN