AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052308


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052308.t1 MTR_4g076200 98.324 179 3 0 1 179 1 179 5.75e-132 367
MS.gene052308.t1 MTR_5g009020 85.311 177 26 0 1 177 1 177 1.31e-114 323
MS.gene052308.t1 MTR_4g076200 97.826 138 3 0 42 179 1 138 7.30e-101 286
MS.gene052308.t1 MTR_1g095510 66.871 163 53 1 18 179 27 189 3.30e-75 224
MS.gene052308.t1 MTR_1g095510 68.148 135 43 0 45 179 1 135 2.03e-64 194
MS.gene052308.t1 MTR_1g095510 60.123 163 44 2 18 179 27 169 9.53e-62 189
MS.gene052308.t1 MTR_4g108080 46.853 143 75 1 30 171 2 144 3.26e-40 134
MS.gene052308.t1 MTR_8g468530 45.517 145 78 1 30 173 18 162 1.09e-39 132
MS.gene052308.t1 MTR_2g078010 45.312 128 70 0 35 162 8 135 8.52e-35 119
MS.gene052308.t1 MTR_2g078010 45.312 128 70 0 35 162 8 135 1.15e-34 119
MS.gene052308.t1 MTR_8g071040 43.750 128 72 0 35 162 4 131 2.12e-34 119
MS.gene052308.t1 MTR_4g073240 44.715 123 68 0 35 157 4 126 7.62e-34 117
MS.gene052308.t1 MTR_3g062450 44.355 124 69 0 35 158 4 127 1.33e-33 116
MS.gene052308.t1 MTR_5g075580 44.355 124 69 0 35 158 4 127 1.48e-33 116
MS.gene052308.t1 MTR_7g116940 43.548 124 70 0 35 158 4 127 3.88e-33 115
MS.gene052308.t1 MTR_1g021150 42.969 128 73 0 35 162 4 131 9.23e-33 114
MS.gene052308.t1 MTR_2g078010 41.549 142 69 1 35 162 8 149 4.12e-32 113
MS.gene052308.t1 MTR_4g108080 48.624 109 56 0 30 138 2 110 1.45e-30 108
MS.gene052308.t1 MTR_1g021150 40.769 130 77 0 33 162 10 139 2.56e-30 108
MS.gene052308.t1 MTR_7g116940 41.221 131 70 1 35 158 4 134 4.37e-30 108
MS.gene052308.t1 MTR_4g073240 48.454 97 50 0 61 157 1 97 1.05e-29 105
MS.gene052308.t1 MTR_5g075580 47.959 98 51 0 61 158 1 98 2.13e-29 105
MS.gene052308.t1 MTR_4g108080 51.000 100 48 1 73 171 45 144 2.52e-28 103
MS.gene052308.t1 MTR_2g078010 45.545 101 55 0 35 135 8 108 6.49e-27 98.6
MS.gene052308.t1 MTR_4g063490 36.641 131 69 2 57 173 30 160 1.73e-26 99.4
MS.gene052308.t1 MTR_8g085690 38.710 124 76 0 35 158 25 148 4.30e-26 98.2
MS.gene052308.t1 MTR_7g116940 41.509 106 62 0 35 140 4 109 1.03e-25 95.9
MS.gene052308.t1 MTR_2g096690 36.641 131 69 2 57 173 30 160 1.27e-24 94.4
MS.gene052308.t1 MTR_2g096690 36.154 130 70 1 57 173 30 159 1.47e-24 94.4
MS.gene052308.t1 MTR_3g098780 37.778 135 80 3 36 168 6 138 6.19e-24 93.2
MS.gene052308.t1 MTR_3g098780 37.778 135 80 3 36 168 30 162 7.62e-24 93.6
MS.gene052308.t1 MTR_3g110110 38.393 112 68 1 47 157 20 131 3.27e-23 90.5
MS.gene052308.t1 MTR_4g094872 36.620 142 82 3 36 169 8 149 2.07e-21 85.9
MS.gene052308.t1 MTR_5g016630 35.616 146 86 3 36 173 8 153 2.51e-21 85.5
MS.gene052308.t1 MTR_4g106690 35.200 125 76 4 35 157 6 127 1.93e-19 81.3
MS.gene052308.t1 MTR_5g019480 38.144 97 57 1 73 169 21 114 5.71e-18 76.3
MS.gene052308.t1 MTR_5g019480 32.090 134 87 2 36 169 33 162 1.16e-17 76.6
MS.gene052308.t1 MTR_5g019480 38.144 97 57 1 73 169 72 165 1.20e-17 76.6
MS.gene052308.t1 MTR_8g028920 33.600 125 78 4 35 157 6 127 2.40e-17 75.9
MS.gene052308.t1 MTR_7g087590 30.968 155 99 2 18 171 3 150 3.36e-17 77.0
MS.gene052308.t1 MTR_4g073240 50.820 61 30 0 97 157 4 64 5.61e-16 69.7
MS.gene052308.t1 MTR_8g098595 36.667 90 55 2 70 157 23 112 1.78e-15 70.5
MS.gene052308.t1 MTR_8g076490 36.364 99 61 2 36 133 19 116 2.27e-15 70.1
MS.gene052308.t1 MTR_8g028920 36.905 84 51 2 76 157 5 88 9.26e-15 68.2
MS.gene052308.t1 MTR_5g021260 34.906 106 67 2 30 134 13 117 3.90e-14 67.0
MS.gene052308.t1 MTR_2g096690 44.615 65 36 0 57 121 30 94 8.28e-14 65.1
MS.gene052308.t1 MTR_4g121960 29.530 149 87 5 33 174 11 148 3.34e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052308.t1 AT3G20060 80.791 177 30 1 1 173 1 177 1.79e-101 290
MS.gene052308.t1 AT1G50490 81.111 180 31 1 1 177 1 180 3.12e-97 279
MS.gene052308.t1 AT3G20060 86.765 136 18 0 42 177 1 136 2.99e-87 252
MS.gene052308.t1 AT2G02760 46.154 143 76 1 30 171 2 144 1.78e-39 132
MS.gene052308.t1 AT2G02760 46.154 143 76 1 30 171 2 144 1.78e-39 132
MS.gene052308.t1 AT2G02760 46.154 143 76 1 30 171 2 144 1.78e-39 132
MS.gene052308.t1 AT2G02760 46.154 143 76 1 30 171 2 144 1.78e-39 132
MS.gene052308.t1 AT1G14400 46.154 143 76 1 30 171 2 144 1.88e-39 132
MS.gene052308.t1 AT1G14400 46.154 143 76 1 30 171 2 144 1.88e-39 132
MS.gene052308.t1 AT5G62540 46.479 142 74 2 30 169 2 143 5.27e-37 125
MS.gene052308.t1 AT1G78870 46.094 128 69 0 35 162 8 135 2.14e-35 121
MS.gene052308.t1 AT1G16890 45.312 128 70 0 35 162 8 135 7.77e-35 120
MS.gene052308.t1 AT5G56150 45.161 124 68 0 35 158 4 127 4.74e-34 118
MS.gene052308.t1 AT1G16890 46.923 130 67 1 35 162 15 144 5.11e-34 118
MS.gene052308.t1 AT1G64230 44.355 124 69 0 35 158 4 127 1.78e-33 116
MS.gene052308.t1 AT1G64230 44.355 124 69 0 35 158 4 127 1.78e-33 116
MS.gene052308.t1 AT2G16740 41.176 136 79 1 35 169 4 139 2.21e-33 116
MS.gene052308.t1 AT4G27960 41.860 129 75 0 35 163 4 132 2.44e-33 116
MS.gene052308.t1 AT3G08700 42.029 138 78 2 35 170 4 141 6.10e-33 115
MS.gene052308.t1 AT3G08700 42.029 138 78 2 35 170 4 141 6.10e-33 115
MS.gene052308.t1 AT3G08690 43.548 124 70 0 35 158 4 127 6.54e-33 115
MS.gene052308.t1 AT3G08690 43.548 124 70 0 35 158 4 127 6.54e-33 115
MS.gene052308.t1 AT5G53300 41.085 129 76 0 35 163 4 132 1.08e-32 114
MS.gene052308.t1 AT5G53300 41.085 129 76 0 35 163 4 132 1.08e-32 114
MS.gene052308.t1 AT5G53300 41.085 129 76 0 35 163 4 132 1.08e-32 114
MS.gene052308.t1 AT5G41700 42.742 124 71 0 35 158 4 127 1.41e-32 114
MS.gene052308.t1 AT5G41700 42.742 124 71 0 35 158 4 127 1.41e-32 114
MS.gene052308.t1 AT5G41700 42.742 124 71 0 35 158 4 127 1.41e-32 114
MS.gene052308.t1 AT4G27960 41.860 129 75 0 35 163 34 162 3.94e-32 114
MS.gene052308.t1 AT5G41700 43.200 125 70 1 35 158 4 128 6.79e-31 110
MS.gene052308.t1 AT1G64230 41.353 133 69 1 35 158 4 136 1.91e-30 108
MS.gene052308.t1 AT1G64230 46.602 103 55 0 56 158 67 169 1.27e-29 107
MS.gene052308.t1 AT1G64230 46.602 103 55 0 56 158 67 169 1.27e-29 107
MS.gene052308.t1 AT1G16890 50.526 95 47 0 68 162 8 102 4.65e-29 104
MS.gene052308.t1 AT1G78870 50.526 95 47 0 68 162 8 102 5.07e-29 104
MS.gene052308.t1 AT1G78870 45.714 105 57 0 35 139 8 112 5.68e-28 101
MS.gene052308.t1 AT1G78870 50.000 96 47 1 68 162 8 103 1.26e-27 100
MS.gene052308.t1 AT3G13550 37.500 136 85 0 35 170 39 174 6.05e-27 100
MS.gene052308.t1 AT1G36340 40.876 137 79 2 26 162 3 137 5.91e-26 97.4
MS.gene052308.t1 AT1G36340 40.876 137 79 2 26 162 3 137 5.91e-26 97.4
MS.gene052308.t1 AT5G50870 41.935 124 67 3 34 155 4 124 1.08e-25 97.8
MS.gene052308.t1 AT5G50870 41.935 124 67 3 34 155 4 124 1.36e-25 97.8
MS.gene052308.t1 AT5G56150 43.000 100 57 0 35 134 4 103 1.73e-25 95.1
MS.gene052308.t1 AT5G41700 40.385 104 62 0 35 138 4 107 2.47e-24 93.2
MS.gene052308.t1 AT3G13550 39.640 111 67 0 35 145 39 149 3.51e-24 93.2
MS.gene052308.t1 AT3G55380 35.115 131 71 2 57 173 31 161 8.54e-24 92.4
MS.gene052308.t1 AT5G53300 40.404 99 59 0 35 133 4 102 9.48e-24 90.5
MS.gene052308.t1 AT5G59300 35.115 131 71 2 57 173 30 160 9.57e-24 92.0
MS.gene052308.t1 AT3G46460 35.878 131 70 2 57 173 30 160 1.65e-23 91.7
MS.gene052308.t1 AT5G25760 38.739 111 67 1 48 157 21 131 3.35e-23 90.5
MS.gene052308.t1 AT5G25760 38.739 111 67 1 48 157 21 131 3.35e-23 90.5
MS.gene052308.t1 AT1G63800 37.600 125 73 4 35 157 6 127 5.72e-21 85.5
MS.gene052308.t1 AT3G57870 36.620 142 82 3 36 169 9 150 1.57e-20 83.6
MS.gene052308.t1 AT5G41340 36.800 125 74 4 35 157 6 127 2.09e-20 84.0
MS.gene052308.t1 AT2G18600 34.959 123 77 3 36 157 35 155 5.70e-19 80.1
MS.gene052308.t1 AT2G18600 34.959 123 77 3 36 157 35 155 5.70e-19 80.1
MS.gene052308.t1 AT1G63800 40.217 92 53 2 68 157 21 112 8.45e-19 79.3
MS.gene052308.t1 AT2G46030 35.200 125 76 4 35 157 6 127 1.30e-18 79.3
MS.gene052308.t1 AT2G46030 35.200 125 76 4 35 157 6 127 1.30e-18 79.3
MS.gene052308.t1 AT5G05080 33.099 142 93 2 32 172 10 150 7.16e-18 78.6
MS.gene052308.t1 AT5G05080 33.099 142 93 2 32 172 10 150 7.16e-18 78.6
MS.gene052308.t1 AT5G05080 33.099 142 93 2 32 172 10 150 7.16e-18 78.6
MS.gene052308.t1 AT5G05080 33.099 142 93 2 32 172 10 150 7.16e-18 78.6
MS.gene052308.t1 AT2G46030 35.200 125 76 4 35 157 78 199 9.15e-18 78.6
MS.gene052308.t1 AT4G36800 31.148 122 83 1 36 157 34 154 5.43e-17 75.1
MS.gene052308.t1 AT4G36800 31.148 122 83 1 36 157 34 154 5.43e-17 75.1
MS.gene052308.t1 AT3G55380 27.907 172 75 4 51 173 24 195 1.99e-16 73.9
MS.gene052308.t1 AT3G46460 33.333 111 60 2 77 173 8 118 5.28e-16 70.9
MS.gene052308.t1 AT3G46460 33.333 111 60 2 77 173 8 118 5.28e-16 70.9
MS.gene052308.t1 AT2G46030 35.644 101 63 2 59 157 30 130 7.38e-16 72.0
MS.gene052308.t1 AT2G46030 35.644 101 63 2 59 157 30 130 7.38e-16 72.0
MS.gene052308.t1 AT5G41340 40.000 85 49 2 75 157 8 92 8.25e-16 71.2
MS.gene052308.t1 AT3G24515 37.391 115 63 4 68 173 51 165 9.78e-16 74.3
MS.gene052308.t1 AT3G24515 37.391 115 63 4 68 173 76 190 1.41e-15 73.9
MS.gene052308.t1 AT1G45050 33.929 112 72 2 24 134 7 117 6.38e-15 68.9
MS.gene052308.t1 AT1G75440 34.234 111 71 2 24 133 7 116 2.66e-14 67.4
MS.gene052308.t1 AT5G42990 33.929 112 72 2 24 134 7 117 2.80e-14 67.4
MS.gene052308.t1 AT4G36410 35.354 99 62 2 36 133 19 116 3.88e-14 67.0
MS.gene052308.t1 AT2G32790 38.017 121 72 2 53 173 51 168 4.71e-14 67.0
MS.gene052308.t1 AT3G17000 32.743 113 67 3 34 141 13 121 7.09e-12 62.8

Find 40 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACTTTAGGAGCCTTAAA+AGG 0.184751 4.4:+34101127 None:intergenic
TTGTTTGTTTATAGGATAAA+TGG 0.261888 4.4:-34100955 MS.gene052308:intron
CATCCCAATGTTGATCTTCA+TGG 0.269716 4.4:-34101085 MS.gene052308:CDS
GCCTTCAAACACTGTATCTT+TGG 0.285480 4.4:+34101189 None:intergenic
CTGTCCATCCAAAGTCTTCT+TGG 0.336173 4.4:-34100902 MS.gene052308:CDS
TGTCAGATGAGCGGTGATTC+TGG 0.340319 4.4:-34101271 MS.gene052308:intron
AGCATCAGTGTTCCCATTGA+TGG 0.378850 4.4:+34102502 None:intergenic
GTAGTTTCAAACTTGACTTT+AGG 0.379535 4.4:+34101115 None:intergenic
TTGTGGAAAGGAACAATAAC+AGG 0.394846 4.4:-34101214 MS.gene052308:CDS
ATCCACAAGCAGCACAGCTT+TGG 0.411990 4.4:-34100665 MS.gene052308:CDS
GCCTTAAAAGGGTAATCATT+AGG 0.415557 4.4:+34101139 None:intergenic
TATATGCTTGGACATACTTC+AGG 0.420859 4.4:-34101059 MS.gene052308:intron
GTCTGAATTGATGTCTTTGA+TGG 0.426742 4.4:-34101515 MS.gene052308:intron
CTCCAAAGCTGTGCTGCTTG+TGG 0.432715 4.4:+34100663 None:intergenic
ATTCCACCTCTGTTCTCAAA+AGG 0.440278 4.4:-34102424 MS.gene052308:intron
TGTGCTGCTTGTGGATTTAG+TGG 0.440911 4.4:+34100672 None:intergenic
TTTAGTGGTGAACTAATGTT+TGG 0.452232 4.4:+34100687 None:intergenic
GTCTACCTCCAAGAAGACTT+TGG 0.472732 4.4:+34100894 None:intergenic
AAGAATATGTTGTCTTCCTC+AGG 0.473205 4.4:+34101235 None:intergenic
TGACTTTAGGAGCCTTAAAA+GGG 0.487045 4.4:+34101128 None:intergenic
ATCAACATTGGGATGGAAGC+AGG 0.492019 4.4:+34101093 None:intergenic
TTATACAGATTACAGAAAGA+TGG 0.493470 4.4:-34100544 MS.gene052308:intron
TTGCCATGAAGATCAACATT+GGG 0.507321 4.4:+34101082 None:intergenic
TCTTCATGGCAATATATGCT+TGG 0.513262 4.4:-34101071 MS.gene052308:CDS
GAGGTGGAATCAACGGACTT+AGG 0.525977 4.4:+34102437 None:intergenic
ATCGACTAAGCAGTAGCACT+TGG 0.531003 4.4:+34100501 None:intergenic
ACCTCCAAGAAGACTTTGGA+TGG 0.537043 4.4:+34100898 None:intergenic
TCCATCCAAAGTCTTCTTGG+AGG 0.548893 4.4:-34100899 MS.gene052308:intron
ACCAAAGATACAGTGTTTGA+AGG 0.558474 4.4:-34101190 MS.gene052308:CDS
GACAACATATTCTTGTGGAA+AGG 0.561762 4.4:-34101226 MS.gene052308:CDS
ACGGACTTAGGAGGAGGAAG+AGG 0.570689 4.4:+34102449 None:intergenic
GAGAACAGAGGTGGAATCAA+CGG 0.579252 4.4:+34102430 None:intergenic
ATTGCCATGAAGATCAACAT+TGG 0.588583 4.4:+34101081 None:intergenic
GAATCAACGGACTTAGGAGG+AGG 0.597125 4.4:+34102443 None:intergenic
AGGAAGACAACATATTCTTG+TGG 0.600574 4.4:-34101231 MS.gene052308:CDS
GTGGAATCAACGGACTTAGG+AGG 0.610762 4.4:+34102440 None:intergenic
CAGCTTTGGAGCAATCAAGA+AGG 0.619795 4.4:-34100651 MS.gene052308:intron
TACAGATTACAGAAAGATGG+TGG 0.634223 4.4:-34100541 MS.gene052308:intron
CATGAAGATCAACATTGGGA+TGG 0.643434 4.4:+34101086 None:intergenic
TGATTGGACTGTCAGATGAG+CGG 0.704407 4.4:-34101280 MS.gene052308:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG - chr4.4:34101038-34101057 MS.gene052308:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr4.4:34101037-34101056 MS.gene052308:intron 10.0%
!! AATTAGAGTTATATTGTATT+GGG - chr4.4:34101103-34101122 MS.gene052308:CDS 15.0%
!! ACAAATGACAATAATAATAA+GGG + chr4.4:34101393-34101412 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr4.4:34101039-34101058 MS.gene052308:intron 15.0%
!! TAAAAAGTTAAAAAAGAGTT+AGG + chr4.4:34102297-34102316 None:intergenic 15.0%
!! TAAAAGAGAGATTTAATAAT+AGG + chr4.4:34100628-34100647 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - chr4.4:34101102-34101121 MS.gene052308:CDS 15.0%
!! TACAAATGACAATAATAATA+AGG + chr4.4:34101394-34101413 None:intergenic 15.0%
!! TTATTTGTTTGTTTGTTTAT+AGG - chr4.4:34102052-34102071 MS.gene052308:intron 15.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr4.4:34101135-34101154 MS.gene052308:CDS 20.0%
!! TATATGTGTAAAACTATGTT+AGG - chr4.4:34102226-34102245 MS.gene052308:intron 20.0%
!! TTGTTTGTTTATAGGATAAA+TGG - chr4.4:34102060-34102079 MS.gene052308:intron 20.0%
!!! ACACTAATCTAATTTGTATA+CGG + chr4.4:34102258-34102277 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr4.4:34101172-34101191 MS.gene052308:CDS 20.0%
! AAAGTGGAATATATTGTACT+GGG - chr4.4:34101062-34101081 MS.gene052308:CDS 25.0%
! GAACAAATGATTGTGATAAA+TGG - chr4.4:34100925-34100944 MS.gene052308:CDS 25.0%
! TTATACAGATTACAGAAAGA+TGG - chr4.4:34102471-34102490 MS.gene052308:CDS 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr4.4:34101171-34101190 MS.gene052308:CDS 25.0%
!!! TGTTTTGCATTTTTTGTGAT+TGG - chr4.4:34101719-34101738 MS.gene052308:intron 25.0%
ACAAGACTCATAATGATTGA+AGG + chr4.4:34102397-34102416 None:intergenic 30.0%
AGGTAATGTGAAATCATCTA+AGG - chr4.4:34101976-34101995 MS.gene052308:intron 30.0%
AGTTTCCAAAGTGACATAAA+AGG - chr4.4:34100902-34100921 MS.gene052308:CDS 30.0%
ATGTTAATGTATGATGTCGT+CGG + chr4.4:34100755-34100774 None:intergenic 30.0%
CATACATTAACATGATCAGT+GGG - chr4.4:34100762-34100781 MS.gene052308:intron 30.0%
CATGTATTTAGCTAATAGTG+TGG - chr4.4:34101672-34101691 MS.gene052308:intron 30.0%
GAAAGTGGAATATATTGTAC+TGG - chr4.4:34101061-34101080 MS.gene052308:CDS 30.0%
GTAGTTTCAAACTTGACTTT+AGG + chr4.4:34101903-34101922 None:intergenic 30.0%
GTTTCCAAAGTGACATAAAA+GGG - chr4.4:34100903-34100922 MS.gene052308:CDS 30.0%
TCATACATTAACATGATCAG+TGG - chr4.4:34100761-34100780 MS.gene052308:intron 30.0%
TCTGAACCTCAACAAAATTA+AGG + chr4.4:34101614-34101633 None:intergenic 30.0%
TGAAAAAACTAAGCTACACA+AGG + chr4.4:34101318-34101337 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr4.4:34101046-34101065 MS.gene052308:intron 30.0%
TTTAGTGGTGAACTAATGTT+TGG + chr4.4:34102331-34102350 None:intergenic 30.0%
! AATCATTATGAGTCTTGTGA+TGG - chr4.4:34102399-34102418 MS.gene052308:intron 30.0%
! TCCTAATGATTACCCTTTTA+AGG - chr4.4:34101875-34101894 MS.gene052308:intron 30.0%
! TTGAAATGGCTCAGTTATTT+TGG - chr4.4:34101149-34101168 MS.gene052308:CDS 30.0%
!! TAGGAGTACTAGTTAAGAAA+TGG + chr4.4:34101355-34101374 None:intergenic 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG - chr4.4:34101150-34101169 MS.gene052308:CDS 30.0%
!!! ATTTGTTGTTGACCTTGTTT+TGG - chr4.4:34102014-34102033 MS.gene052308:intron 30.0%
!!! CACGTTCATTATTGTTTTTG+AGG - chr4.4:34101563-34101582 MS.gene052308:intron 30.0%
AAGAATATGTTGTCTTCCTC+AGG + chr4.4:34101783-34101802 None:intergenic 35.0%
ACAATGTGCGAATGTAACTT+TGG + chr4.4:34101644-34101663 None:intergenic 35.0%
ACCAAAGATACAGTGTTTGA+AGG - chr4.4:34101825-34101844 MS.gene052308:intron 35.0%
ACTACAAGTGTCTAAGTAAG+TGG - chr4.4:34101250-34101269 MS.gene052308:CDS 35.0%
AGAAAATGGGTCAGATATTC+CGG - chr4.4:34101185-34101204 MS.gene052308:CDS 35.0%
AGGAAGACAACATATTCTTG+TGG - chr4.4:34101784-34101803 MS.gene052308:intron 35.0%
ATCTGTGTGAAAAACCAAAC+TGG + chr4.4:34101017-34101036 None:intergenic 35.0%
ATGTAGCCGTAACACATAAA+TGG + chr4.4:34101280-34101299 None:intergenic 35.0%
ATTGCCATGAAGATCAACAT+TGG + chr4.4:34101937-34101956 None:intergenic 35.0%
CTACAAGTGTCTAAGTAAGT+GGG - chr4.4:34101251-34101270 MS.gene052308:CDS 35.0%
CTTGTATGCATTCTTAGATG+AGG - chr4.4:34100795-34100814 MS.gene052308:intron 35.0%
GACAACATATTCTTGTGGAA+AGG - chr4.4:34101789-34101808 MS.gene052308:intron 35.0%
GCCTTAAAAGGGTAATCATT+AGG + chr4.4:34101879-34101898 None:intergenic 35.0%
GCTCAACACACAAATCAAAT+TGG + chr4.4:34101472-34101491 None:intergenic 35.0%
GTCTGAATTGATGTCTTTGA+TGG - chr4.4:34101500-34101519 MS.gene052308:intron 35.0%
TACAGATTACAGAAAGATGG+TGG - chr4.4:34102474-34102493 MS.gene052308:CDS 35.0%
TATATGCTTGGACATACTTC+AGG - chr4.4:34101956-34101975 MS.gene052308:intron 35.0%
TCTTCATGGCAATATATGCT+TGG - chr4.4:34101944-34101963 MS.gene052308:intron 35.0%
TTGCCATGAAGATCAACATT+GGG + chr4.4:34101936-34101955 None:intergenic 35.0%
TTGTGGAAAGGAACAATAAC+AGG - chr4.4:34101801-34101820 MS.gene052308:intron 35.0%
! TGACTTTAGGAGCCTTAAAA+GGG + chr4.4:34101890-34101909 None:intergenic 35.0%
! TTGACTTTAGGAGCCTTAAA+AGG + chr4.4:34101891-34101910 None:intergenic 35.0%
!! TGTTCCCTTTTATGTCACTT+TGG + chr4.4:34100910-34100929 None:intergenic 35.0%
!! TGTTTTGTTGGAGCAACAAT+GGG + chr4.4:34100545-34100564 None:intergenic 35.0%
!! TTGTTTTGTTGGAGCAACAA+TGG + chr4.4:34100546-34100565 None:intergenic 35.0%
!!! ACACGTTCTTTGTTTTGTGT+TGG - chr4.4:34101445-34101464 MS.gene052308:intron 35.0%
ACACCTTATACCGTTCATGT+GGG - chr4.4:34100868-34100887 MS.gene052308:intron 40.0%
ACATGAACGGTATAAGGTGT+CGG + chr4.4:34100868-34100887 None:intergenic 40.0%
ACTTGTGTGATCCACATCAA+TGG - chr4.4:34100818-34100837 MS.gene052308:intron 40.0%
ATTCCACCTCTGTTCTCAAA+AGG - chr4.4:34100591-34100610 MS.gene052308:intron 40.0%
CATCCCAATGTTGATCTTCA+TGG - chr4.4:34101930-34101949 MS.gene052308:intron 40.0%
CATGAAGATCAACATTGGGA+TGG + chr4.4:34101932-34101951 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG - chr4.4:34101186-34101205 MS.gene052308:CDS 40.0%
GCCTTCAAACACTGTATCTT+TGG + chr4.4:34101829-34101848 None:intergenic 40.0%
GGGCATCCATTTATGTGTTA+CGG - chr4.4:34101271-34101290 MS.gene052308:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG + chr4.4:34101002-34101021 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG + chr4.4:34101003-34101022 None:intergenic 40.0%
! GTGACGCCTTAATTTTGTTG+AGG - chr4.4:34101605-34101624 MS.gene052308:intron 40.0%
!! AAACCTTTTGAGAACAGAGG+TGG + chr4.4:34100597-34100616 None:intergenic 40.0%
!! AGGGTTTGCTAACTAGTGTT+AGG + chr4.4:34101374-34101393 None:intergenic 40.0%
!! GAGAAACCTTTTGAGAACAG+AGG + chr4.4:34100600-34100619 None:intergenic 40.0%
!! TGGTATATCTGCTTTTCCTG+AGG - chr4.4:34101764-34101783 MS.gene052308:intron 40.0%
!!! TTGTTGACCTTGTTTTGGCT+TGG - chr4.4:34102019-34102038 MS.gene052308:intron 40.0%
ACCTCCAAGAAGACTTTGGA+TGG + chr4.4:34102120-34102139 None:intergenic 45.0%
AGCATCAGTGTTCCCATTGA+TGG + chr4.4:34100516-34100535 None:intergenic 45.0%
ATCAACATTGGGATGGAAGC+AGG + chr4.4:34101925-34101944 None:intergenic 45.0%
ATTAAATACTCCCTCCGTCC+CGG + chr4.4:34101207-34101226 None:intergenic 45.0%
CAGTATGCCAAGCCAAAACA+AGG + chr4.4:34102029-34102048 None:intergenic 45.0%
CATGATCAGTGGGTCTTTGT+TGG - chr4.4:34100772-34100791 MS.gene052308:intron 45.0%
CTGTCCATCCAAAGTCTTCT+TGG - chr4.4:34102113-34102132 MS.gene052308:intron 45.0%
GACACCTTATACCGTTCATG+TGG - chr4.4:34100867-34100886 MS.gene052308:intron 45.0%
GAGAACAGAGGTGGAATCAA+CGG + chr4.4:34100588-34100607 None:intergenic 45.0%
GTCTACCTCCAAGAAGACTT+TGG + chr4.4:34102124-34102143 None:intergenic 45.0%
TACCGTTCATGTGGGTCATT+CGG - chr4.4:34100876-34100895 MS.gene052308:intron 45.0%
TCCATCCAAAGTCTTCTTGG+AGG - chr4.4:34102116-34102135 MS.gene052308:intron 45.0%
TGACCCACATGAACGGTATA+AGG + chr4.4:34100874-34100893 None:intergenic 45.0%
TGATCCACATCAATGGCACA+CGG - chr4.4:34100825-34100844 MS.gene052308:intron 45.0%
TGATTGGACTGTCAGATGAG+CGG - chr4.4:34101735-34101754 MS.gene052308:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG - chr4.4:34101000-34101019 MS.gene052308:intron 45.0%
!! CAGCTTTGGAGCAATCAAGA+AGG - chr4.4:34102364-34102383 MS.gene052308:intron 45.0%
!! GGAGGAAGAGGTTGTTTTGT+TGG + chr4.4:34100557-34100576 None:intergenic 45.0%
!! TGTGCTGCTTGTGGATTTAG+TGG + chr4.4:34102346-34102365 None:intergenic 45.0%
ACCCGAATGACCCACATGAA+CGG + chr4.4:34100881-34100900 None:intergenic 50.0%
ACCGTTCATGTGGGTCATTC+GGG - chr4.4:34100877-34100896 MS.gene052308:intron 50.0%
ATCCACAAGCAGCACAGCTT+TGG - chr4.4:34102350-34102369 MS.gene052308:intron 50.0%
ATGGGTCAGATATTCCGGGA+CGG - chr4.4:34101190-34101209 MS.gene052308:CDS 50.0%
CTCAGATAAAACGGGACGGA+GGG + chr4.4:34100994-34101013 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG + chr4.4:34100998-34101017 None:intergenic 50.0%
TGTCAGATGAGCGGTGATTC+TGG - chr4.4:34101744-34101763 MS.gene052308:intron 50.0%
! GAATCAACGGACTTAGGAGG+AGG + chr4.4:34100575-34100594 None:intergenic 50.0%
! GAGGTGGAATCAACGGACTT+AGG + chr4.4:34100581-34100600 None:intergenic 50.0%
! GTGGAATCAACGGACTTAGG+AGG + chr4.4:34100578-34100597 None:intergenic 50.0%
ACGGACTTAGGAGGAGGAAG+AGG + chr4.4:34100569-34100588 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG + chr4.4:34100995-34101014 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG - chr4.4:34101194-34101213 MS.gene052308:CDS 55.0%
! GACACCGTGTGCCATTGATG+TGG + chr4.4:34100832-34100851 None:intergenic 55.0%
!! CTCCAAAGCTGTGCTGCTTG+TGG + chr4.4:34102355-34102374 None:intergenic 55.0%
GGTCAGATATTCCGGGACGG+AGG - chr4.4:34101193-34101212 MS.gene052308:CDS 60.0%
!! AAGGTGTCGGTGCACTCTGC+AGG + chr4.4:34100855-34100874 None:intergenic 60.0%
!! AGGTGTCGGTGCACTCTGCA+GGG + chr4.4:34100854-34100873 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 34100506 34102531 34100506 ID=MS.gene052308
chr4.4 mRNA 34100506 34102531 34100506 ID=MS.gene052308.t1;Parent=MS.gene052308
chr4.4 exon 34102425 34102531 34102425 ID=MS.gene052308.t1.exon1;Parent=MS.gene052308.t1
chr4.4 CDS 34102425 34102531 34102425 ID=cds.MS.gene052308.t1;Parent=MS.gene052308.t1
chr4.4 exon 34101516 34101543 34101516 ID=MS.gene052308.t1.exon2;Parent=MS.gene052308.t1
chr4.4 CDS 34101516 34101543 34101516 ID=cds.MS.gene052308.t1;Parent=MS.gene052308.t1
chr4.4 exon 34101060 34101287 34101060 ID=MS.gene052308.t1.exon3;Parent=MS.gene052308.t1
chr4.4 CDS 34101060 34101287 34101060 ID=cds.MS.gene052308.t1;Parent=MS.gene052308.t1
chr4.4 exon 34100900 34100963 34100900 ID=MS.gene052308.t1.exon4;Parent=MS.gene052308.t1
chr4.4 CDS 34100900 34100963 34100900 ID=cds.MS.gene052308.t1;Parent=MS.gene052308.t1
chr4.4 exon 34100652 34100711 34100652 ID=MS.gene052308.t1.exon5;Parent=MS.gene052308.t1
chr4.4 CDS 34100652 34100711 34100652 ID=cds.MS.gene052308.t1;Parent=MS.gene052308.t1
chr4.4 exon 34100506 34100558 34100506 ID=MS.gene052308.t1.exon6;Parent=MS.gene052308.t1
chr4.4 CDS 34100506 34100558 34100506 ID=cds.MS.gene052308.t1;Parent=MS.gene052308.t1
Gene Sequence

>MS.gene052308

ATGGCTACCATCAATGGGAACACTGATGCTGCTCAACCCATTGTTGCTCCAACAAAACAACCTCTTCCTCCTCCTAAGTCCGTTGATTCCACCTCTGTTCTCAAAAGGTTTCTCATTCACCTATTATTAAATCTCTCTTTTACTTGTTTTTGTTTCATGTCAATATGTGTTAACTTGTGTTTTTTCAATCGCTTCATCACACTTATGTTCTTTTTAAAATAATGTATGCTGACATTCAAAGTAATACCGACGACATCATACATTAACATGATCAGTGGGTCTTTGTTGGCTTGTATGCATTCTTAGATGAGGACTTGTGTGATCCACATCAATGGCACACGGTGTCCCTGCAGAGTGCACCGACACCTTATACCGTTCATGTGGGTCATTCGGGTCAGTTTCCAAAGTGACATAAAAGGGAACAAATGATTGTGATAAATGGTGTCGATATCACTTTGAGTAATAGCACAACATTATTGTATACACCCTCCGTCCCGTTTTATCTGAGCCAGTTTGGTTTTTCACACAGATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTGTACTGGGAATGATGAAAGTAGTATTAATTAGAGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGGCTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGATATTCCGGGACGGAGGGAGTATTTAATTAGTTTCATTATTTTCTTAAATTACTACAAGTGTCTAAGTAAGTGGGCATCCATTTATGTGTTACGGCTACATAGATCAACTGTGATGCCTTGTGTAGCTTAGTTTTTTCAAATCAATGAGTTAACCATTTCTTAACTAGTACTCCTAACACTAGTTAGCAAACCCTTATTATTATTGTCATTTGTAACAGCATTTGATTTGATTTGATTTGATTCTAACACGTTCTTTGTTTTGTGTTGGTCCAATTTGATTTGTGTGTTGAGCAGATTGCAGTCTGAATTGATGTCTTTGATGGTAAGCTTATATCAACTATCATTAATCATTATTGATTCTAACACGTTCATTATTGTTTTTGAGGCTGCTTGTTTAGAATCACAGTGACGCCTTAATTTTGTTGAGGTTCAGAGTTTTTGCCAAAGTTACATTCGCACATTGTGAATCAAACATGTATTTAGCTAATAGTGTGGATCAGTTGAAAACATAGATATTAATGTTTTGCATTTTTTGTGATTGGACTGTCAGATGAGCGGTGATTCTGGTATATCTGCTTTTCCTGAGGAAGACAACATATTCTTGTGGAAAGGAACAATAACAGGAACCAAAGATACAGTGTTTGAAGGCACAGATTACAAGTTATCACTTTCTTTTCCTAATGATTACCCTTTTAAGGCTCCTAAAGTCAAGTTTGAAACTACCTGCTTCCATCCCAATGTTGATCTTCATGGCAATATATGCTTGGACATACTTCAGGTAATGTGAAATCATCTAAGGAACATTTTAATGAGCATTTGTTGTTGACCTTGTTTTGGCTTGGCATACTGATCTTATTTGTTTGTTTGTTTATAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTACTGTCCATCCAAAGTCTTCTTGGAGGTAGACACAATGATTGAAAATTTTGTGCACACTTTAATTAATTGTTTTCTGAAATTTATATGCTGTTAACAAGTTTTTCATATGCAGATATATGTGTAAAACTATGTTAGGCTTGCACCGTATACAAATTAGATTAGTGTATTCTTTGTACTTTTTCCTAACTCTTTTTTAACTTTTTAATAATGTAGAGCCAAACATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGGTAATAGTCCTTCAATCATTATGAGTCTTGTGATGGATATAATTTGTGAATCTCAAATATAGTTATAATGATTTTTGATGATTTGTTATACAGATTACAGAAAGATGGTGGAGAAGTTGTACAAAGCTCCAAGTGCTACTGCTTAG

Protein sequence

>MS.gene052308.t1

MATINGNTDAAQPIVAPTKQPLPPPKSVDSTSVLKRLQSELMSLMMSGDSGISAFPEEDNIFLWKGTITGTKDTVFEGTDYKLSLSFPNDYPFKAPKVKFETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVEKLYKAPSATA