Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61774.t1 | XP_013458300.1 | 98.5 | 647 | 10 | 0 | 1 | 647 | 2 | 648 | 0.00E+00 | 1315.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61774.t1 | Q8GZ17 | 66.3 | 617 | 204 | 3 | 31 | 646 | 46 | 659 | 1.9e-251 | 869.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61774.t1 | A0A072USM1 | 98.5 | 647 | 10 | 0 | 1 | 647 | 2 | 648 | 0.0e+00 | 1315.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050811 | MS.gene61774 | 0.80641 | 8.34E-50 | -1.69E-46 |
| MS.gene059061 | MS.gene61774 | 0.804724 | 1.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61774.t1 | MTR_4g121080 | 98.454 | 647 | 10 | 0 | 1 | 647 | 2 | 648 | 0.0 | 1313 |
| MS.gene61774.t1 | MTR_2g034950 | 68.585 | 643 | 191 | 6 | 6 | 641 | 8 | 646 | 0.0 | 882 |
| MS.gene61774.t1 | MTR_5g005590 | 54.063 | 603 | 266 | 7 | 28 | 628 | 36 | 629 | 0.0 | 673 |
| MS.gene61774.t1 | MTR_2g083210 | 51.535 | 619 | 289 | 8 | 30 | 647 | 53 | 661 | 0.0 | 609 |
| MS.gene61774.t1 | MTR_7g015950 | 26.115 | 471 | 289 | 19 | 188 | 645 | 18 | 442 | 3.38e-42 | 159 |
| MS.gene61774.t1 | MTR_2g104890 | 26.452 | 465 | 265 | 21 | 203 | 645 | 35 | 444 | 5.99e-40 | 152 |
| MS.gene61774.t1 | MTR_6g015875 | 26.964 | 471 | 284 | 21 | 188 | 645 | 19 | 442 | 1.56e-38 | 148 |
| MS.gene61774.t1 | MTR_2g462000 | 27.897 | 466 | 281 | 20 | 192 | 646 | 19 | 440 | 5.03e-35 | 138 |
| MS.gene61774.t1 | MTR_2g462010 | 25.107 | 466 | 294 | 18 | 192 | 647 | 29 | 449 | 1.92e-34 | 137 |
| MS.gene61774.t1 | MTR_6g015880 | 26.984 | 441 | 253 | 23 | 203 | 627 | 26 | 413 | 7.61e-34 | 134 |
| MS.gene61774.t1 | MTR_3g117690 | 24.113 | 423 | 264 | 15 | 203 | 617 | 36 | 409 | 3.12e-33 | 133 |
| MS.gene61774.t1 | MTR_7g015960 | 26.230 | 427 | 251 | 21 | 203 | 618 | 26 | 399 | 7.87e-31 | 125 |
| MS.gene61774.t1 | MTR_6g015865 | 25.849 | 383 | 231 | 16 | 238 | 617 | 15 | 347 | 1.18e-29 | 120 |
| MS.gene61774.t1 | MTR_7g015960 | 25.057 | 435 | 256 | 22 | 195 | 618 | 14 | 389 | 5.33e-28 | 117 |
| MS.gene61774.t1 | MTR_4g121060 | 67.213 | 61 | 19 | 1 | 574 | 634 | 52 | 111 | 5.92e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61774.t1 | AT4G16120 | 67.662 | 603 | 190 | 4 | 31 | 631 | 46 | 645 | 0.0 | 860 |
| MS.gene61774.t1 | AT3G16860 | 64.640 | 625 | 207 | 7 | 27 | 646 | 36 | 651 | 0.0 | 820 |
| MS.gene61774.t1 | AT5G49270 | 60.806 | 620 | 237 | 5 | 31 | 647 | 45 | 661 | 0.0 | 796 |
| MS.gene61774.t1 | AT3G20580 | 52.327 | 623 | 285 | 5 | 27 | 642 | 54 | 671 | 0.0 | 658 |
| MS.gene61774.t1 | AT4G27110 | 51.057 | 615 | 293 | 5 | 31 | 645 | 48 | 654 | 0.0 | 658 |
| MS.gene61774.t1 | AT5G60920 | 26.531 | 441 | 268 | 19 | 204 | 632 | 44 | 440 | 1.10e-36 | 143 |
| MS.gene61774.t1 | AT3G29810 | 26.477 | 457 | 271 | 21 | 204 | 646 | 36 | 441 | 8.69e-36 | 140 |
| MS.gene61774.t1 | AT3G02210 | 26.539 | 471 | 284 | 23 | 190 | 646 | 26 | 448 | 6.27e-35 | 138 |
| MS.gene61774.t1 | AT5G60920 | 26.316 | 437 | 266 | 19 | 208 | 632 | 1 | 393 | 6.38e-35 | 137 |
| MS.gene61774.t1 | AT5G15630 | 26.503 | 449 | 268 | 21 | 203 | 638 | 27 | 426 | 1.60e-34 | 136 |
| MS.gene61774.t1 | AT1G09790 | 26.932 | 427 | 246 | 17 | 204 | 618 | 43 | 415 | 8.74e-34 | 135 |
| MS.gene61774.t1 | AT1G09790 | 26.932 | 427 | 246 | 17 | 204 | 618 | 32 | 404 | 9.50e-34 | 134 |
| MS.gene61774.t1 | AT5G15630 | 26.376 | 436 | 258 | 21 | 220 | 643 | 8 | 392 | 1.18e-31 | 127 |
| MS.gene61774.t1 | AT5G15630 | 26.353 | 425 | 247 | 21 | 229 | 643 | 11 | 379 | 1.11e-30 | 124 |
| MS.gene61774.t1 | AT5G15630 | 26.353 | 425 | 247 | 21 | 229 | 643 | 11 | 379 | 1.11e-30 | 124 |
| MS.gene61774.t1 | AT5G15630 | 26.687 | 326 | 196 | 16 | 203 | 522 | 27 | 315 | 1.22e-24 | 106 |
Find 0 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAACCTTTTTTTTTTAAA+TGG | - | 32495:2331-2350 | MS.gene61774:CDS | 10.0% |
| !! | AACAACCATTTAAAAAAAAA+AGG | + | 32495:2339-2358 | MS.gene61774:intergenic | 15.0% |
| !!! | AGATAAAATTGTTTTTTCTT+AGG | + | 32495:2217-2236 | MS.gene61774:intergenic | 15.0% |
| !! | AATAATACGATAATAATGCA+AGG | - | 32495:3485-3504 | MS.gene61774:CDS | 20.0% |
| !! | ACAACTTAATTAAAAGCTTA+AGG | + | 32495:2291-2310 | MS.gene61774:intergenic | 20.0% |
| !! | TTACTGTCAGATTATAATAA+AGG | - | 32495:3320-3339 | MS.gene61774:CDS | 20.0% |
| !! | TTGAATTTATATGTATCGTT+TGG | - | 32495:1878-1897 | MS.gene61774:CDS | 20.0% |
| !!! | AAAGCAAAAAATCTAAAACA+AGG | + | 32495:1688-1707 | MS.gene61774:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATTGAAAC+AGG | - | 32495:2301-2320 | MS.gene61774:CDS | 20.0% |
| !!! | TTTTCCAATTAATGTTACAA+GGG | - | 32495:1962-1981 | MS.gene61774:CDS | 20.0% |
| !!! | TTTTTCCAATTAATGTTACA+AGG | - | 32495:1961-1980 | MS.gene61774:CDS | 20.0% |
| ! | AATACCCTTGTAACATTAAT+TGG | + | 32495:1969-1988 | MS.gene61774:intergenic | 25.0% |
| ! | ATCCTATGATTCAAATTACT+GGG | - | 32495:2488-2507 | MS.gene61774:CDS | 25.0% |
| ! | CAATTATCAAAAGTTCTCTA+GGG | + | 32495:2194-2213 | MS.gene61774:intergenic | 25.0% |
| ! | GAGTTCATATTTACAATGAA+AGG | - | 32495:2588-2607 | MS.gene61774:intron | 25.0% |
| ! | TACTATATTGCCAAAATCTA+TGG | - | 32495:2791-2810 | MS.gene61774:intron | 25.0% |
| ! | TCAGTATCATTGAATTTAGT+AGG | + | 32495:2738-2757 | MS.gene61774:intergenic | 25.0% |
| ! | TTGACTAAAAAAGAACCATT+TGG | + | 32495:2057-2076 | MS.gene61774:intergenic | 25.0% |
| ! | TTTAAATGGTTGTTACTGTT+AGG | - | 32495:2345-2364 | MS.gene61774:CDS | 25.0% |
| !! | AAATTCAATGATCTAGCTTA+TGG | + | 32495:1866-1885 | MS.gene61774:intergenic | 25.0% |
| !! | AATCTAAAACAAGGAAAAGA+AGG | + | 32495:1679-1698 | MS.gene61774:intergenic | 25.0% |
| !! | AATTCAATGATCTAGCTTAT+GGG | + | 32495:1865-1884 | MS.gene61774:intergenic | 25.0% |
| !! | TCTAAGATTTGTTTCAAATC+AGG | - | 32495:1731-1750 | MS.gene61774:CDS | 25.0% |
| !!! | AGGGTTTTGTAATTTGAATA+AGG | - | 32495:1761-1780 | MS.gene61774:CDS | 25.0% |
| !!! | TAGATTTTTTGCTTTTGTCT+AGG | - | 32495:1693-1712 | MS.gene61774:CDS | 25.0% |
| AAATTCAATGATACTGACGT+TGG | - | 32495:2741-2760 | MS.gene61774:intron | 30.0% | |
| AATCTCGAAATAGACTTACT+AGG | + | 32495:2819-2838 | MS.gene61774:intergenic | 30.0% | |
| AATTCAATGATACTGACGTT+GGG | - | 32495:2742-2761 | MS.gene61774:intron | 30.0% | |
| AATTTGAATAAGGCTCTGTT+TGG | - | 32495:1771-1790 | MS.gene61774:CDS | 30.0% | |
| ATAATAATGCAAGGTTTGGA+GGG | - | 32495:3494-3513 | MS.gene61774:CDS | 30.0% | |
| CGTTTGGTAAAATTCATTGT+TGG | - | 32495:1894-1913 | MS.gene61774:CDS | 30.0% | |
| CTAATGTATTGAATTGTCAG+AGG | - | 32495:2688-2707 | MS.gene61774:intron | 30.0% | |
| GATCCTATGATTCAAATTAC+TGG | - | 32495:2487-2506 | MS.gene61774:CDS | 30.0% | |
| GCAATTATCAAAAGTTCTCT+AGG | + | 32495:2195-2214 | MS.gene61774:intergenic | 30.0% | |
| GTATCATTGAATTTAGTAGG+AGG | + | 32495:2735-2754 | MS.gene61774:intergenic | 30.0% | |
| TACGATAATAATGCAAGGTT+TGG | - | 32495:3490-3509 | MS.gene61774:CDS | 30.0% | |
| TGTCAGATTATAATAAAGGC+TGG | - | 32495:3324-3343 | MS.gene61774:CDS | 30.0% | |
| TGTCTATAAGCTCAAATATG+TGG | - | 32495:2100-2119 | MS.gene61774:CDS | 30.0% | |
| TGTTACTGTTAGGTAAGAAT+GGG | - | 32495:2355-2374 | MS.gene61774:CDS | 30.0% | |
| TTAGTATGATTGTTGCTAAG+AGG | + | 32495:1194-1213 | MS.gene61774:intergenic | 30.0% | |
| TTGTTACTGTTAGGTAAGAA+TGG | - | 32495:2354-2373 | MS.gene61774:CDS | 30.0% | |
| TTTCAAATCAGGTGTGATAA+GGG | - | 32495:1742-1761 | MS.gene61774:CDS | 30.0% | |
| ! | GTAATGTTTGCTTTGAACTT+AGG | + | 32495:2405-2424 | MS.gene61774:intergenic | 30.0% |
| ! | TTACTAGGATCCATAGATTT+TGG | + | 32495:2804-2823 | MS.gene61774:intergenic | 30.0% |
| !! | ATTAACACCACCTATTTCTA+TGG | + | 32495:3468-3487 | MS.gene61774:intergenic | 30.0% |
| !!! | GCCATTACAGTTTTGTTTAA+CGG | + | 32495:2996-3015 | MS.gene61774:intergenic | 30.0% |
| ACAAAACTGTAATGGCAAGT+TGG | - | 32495:3000-3019 | MS.gene61774:intron | 35.0% | |
| AGAAAGTGATGGTTACCAAA+TGG | - | 32495:2039-2058 | MS.gene61774:CDS | 35.0% | |
| AGTAGGAGGAAGATCAATAA+TGG | + | 32495:2721-2740 | MS.gene61774:intergenic | 35.0% | |
| ATAAGCTCGTAAGAAAGTGA+TGG | - | 32495:2028-2047 | MS.gene61774:CDS | 35.0% | |
| ATGTATTGAATTGTCAGAGG+AGG | - | 32495:2691-2710 | MS.gene61774:intron | 35.0% | |
| CAAGAAAGTCTTCTTCAATG+GGG | - | 32495:3658-3677 | MS.gene61774:CDS | 35.0% | |
| CCAAGAAAGTCTTCTTCAAT+GGG | - | 32495:3657-3676 | MS.gene61774:CDS | 35.0% | |
| CCATTGAAGAAGACTTTCTT+GGG | + | 32495:3659-3678 | MS.gene61774:intergenic | 35.0% | |
| GATAATAATGCAAGGTTTGG+AGG | - | 32495:3493-3512 | MS.gene61774:CDS | 35.0% | |
| GCCGTTAAACAAAACTGTAA+TGG | - | 32495:2992-3011 | MS.gene61774:intron | 35.0% | |
| GTTTCAAATCAGGTGTGATA+AGG | - | 32495:1741-1760 | MS.gene61774:CDS | 35.0% | |
| TAAGCAGATAAACTCTCTCA+TGG | + | 32495:2139-2158 | MS.gene61774:intergenic | 35.0% | |
| TACCTTGTTGGAGAAACAAA+TGG | - | 32495:3524-3543 | MS.gene61774:CDS | 35.0% | |
| TATTTCGAGATTCCAAATGC+AGG | - | 32495:2827-2846 | MS.gene61774:intron | 35.0% | |
| TGCCCAGTAATTTGAATCAT+AGG | + | 32495:2493-2512 | MS.gene61774:intergenic | 35.0% | |
| TTCACAAAGAAAACTACTCC+TGG | - | 32495:3602-3621 | MS.gene61774:CDS | 35.0% | |
| TTCATCTGTCAAAAAACCAC+CGG | - | 32495:1645-1664 | MS.gene61774:CDS | 35.0% | |
| ! | AAGGGTCACACTTTTCAATT+GGG | - | 32495:3352-3371 | MS.gene61774:CDS | 35.0% |
| ! | AAGGTTGATTCAAATCGGTA+GGG | + | 32495:1324-1343 | MS.gene61774:intergenic | 35.0% |
| ! | ACATGTTCTTGCTGTATTCT+TGG | + | 32495:3141-3160 | MS.gene61774:intergenic | 35.0% |
| ! | ATGTTCTTGCTGTATTCTTG+GGG | + | 32495:3139-3158 | MS.gene61774:intergenic | 35.0% |
| ! | CATGTTCTTGCTGTATTCTT+GGG | + | 32495:3140-3159 | MS.gene61774:intergenic | 35.0% |
| ! | CGCTTAAGGTTGATTCAAAT+CGG | + | 32495:1329-1348 | MS.gene61774:intergenic | 35.0% |
| ! | TAAGGTTGATTCAAATCGGT+AGG | + | 32495:1325-1344 | MS.gene61774:intergenic | 35.0% |
| !! | GATGCTTCTGGTTGTATTTT+TGG | - | 32495:2630-2649 | MS.gene61774:intron | 35.0% |
| !! | TAGAAGCATCAAAGTAGCAA+AGG | + | 32495:3741-3760 | MS.gene61774:intergenic | 35.0% |
| !!! | GGTTGTATTTTTGGTAAGCA+AGG | - | 32495:2639-2658 | MS.gene61774:intron | 35.0% |
| AAAAGGAACAAGGACAGCAT+CGG | + | 32495:3195-3214 | None:intergenic | 40.0% | |
| AAACTCTCTCATGGTCTGTT+TGG | + | 32495:2130-2149 | None:intergenic | 40.0% | |
| AAGAAGACGACTAGCAACAA+TGG | + | 32495:3764-3783 | MS.gene61774:intergenic | 40.0% | |
| AATGCAAGCGCCATAGAAAT+AGG | - | 32495:3455-3474 | MS.gene61774:CDS | 40.0% | |
| AGCAAAGGAAAATTCCTTCC+TGG | + | 32495:3726-3745 | MS.gene61774:intergenic | 40.0% | |
| ATAATAAAGGCTGGAGTGCA+AGG | - | 32495:3333-3352 | MS.gene61774:CDS | 40.0% | |
| ATCGGTAACCAAAATCCTCT+CGG | - | 32495:2522-2541 | MS.gene61774:CDS | 40.0% | |
| ATCGTTACACGATTGTGCAT+CGG | + | 32495:1232-1251 | MS.gene61774:intergenic | 40.0% | |
| CCCAAGAAAGTCTTCTTCAA+TGG | - | 32495:3656-3675 | MS.gene61774:CDS | 40.0% | |
| CCCATTGAAGAAGACTTTCT+TGG | + | 32495:3660-3679 | MS.gene61774:intergenic | 40.0% | |
| CTTAACCCTGACTACAAATG+CGG | - | 32495:2921-2940 | MS.gene61774:intron | 40.0% | |
| GCATTTACTTGATGTTCCCT+TGG | + | 32495:3051-3070 | MS.gene61774:intergenic | 40.0% | |
| GGAAAATTCCTTCTTGTTGC+CGG | - | 32495:2763-2782 | MS.gene61774:intron | 40.0% | |
| GGAGGAAGATCAATAATGGT+AGG | + | 32495:2717-2736 | MS.gene61774:intergenic | 40.0% | |
| TAATAAAGGCTGGAGTGCAA+GGG | - | 32495:3334-3353 | MS.gene61774:CDS | 40.0% | |
| TCTGAAGACTGCTGTTGAAA+CGG | - | 32495:1512-1531 | MS.gene61774:CDS | 40.0% | |
| TGATAATTGGAGGTTGAGCT+GGG | - | 32495:2551-2570 | MS.gene61774:CDS | 40.0% | |
| TGATTCAAATTACTGGGCAG+AGG | - | 32495:2494-2513 | MS.gene61774:CDS | 40.0% | |
| TGTAACATTACAGCAGCCAA+GGG | - | 32495:3032-3051 | MS.gene61774:intron | 40.0% | |
| TTAGCAAGCTTGATCGTCTT+CGG | + | 32495:1618-1637 | MS.gene61774:intergenic | 40.0% | |
| TTCGGTTCTCAAAAGGAACA+AGG | + | 32495:3205-3224 | MS.gene61774:intergenic | 40.0% | |
| TTGGCAATATAGTACCGTTC+CGG | + | 32495:2785-2804 | MS.gene61774:intergenic | 40.0% | |
| ! | AGGGTCACACTTTTCAATTG+GGG | - | 32495:3353-3372 | MS.gene61774:CDS | 40.0% |
| ! | CAAGGGTCACACTTTTCAAT+TGG | - | 32495:3351-3370 | MS.gene61774:CDS | 40.0% |
| ! | CGACTTATTGAGGCTCTTTT+TGG | - | 32495:1796-1815 | MS.gene61774:CDS | 40.0% |
| ! | CTCCATTTGTTTCTCCAACA+AGG | + | 32495:3529-3548 | MS.gene61774:intergenic | 40.0% |
| ! | CTGTTTGGATCGACTTATTG+AGG | - | 32495:1786-1805 | MS.gene61774:CDS | 40.0% |
| ! | GCATTTTGTACACCTGCATT+TGG | + | 32495:2842-2861 | MS.gene61774:intergenic | 40.0% |
| ! | GTGAGACTAATTTTGCAGAC+TGG | - | 32495:3375-3394 | MS.gene61774:CDS | 40.0% |
| ! | TTGATAATTGGAGGTTGAGC+TGG | - | 32495:2550-2569 | MS.gene61774:CDS | 40.0% |
| !! | ACGATCAAGCTTGCTAATGA+TGG | - | 32495:1621-1640 | MS.gene61774:CDS | 40.0% |
| !! | ATTACTGACTGTTGTTTCCC+AGG | + | 32495:3578-3597 | MS.gene61774:intergenic | 40.0% |
| !! | GTAAGATCACCATTTTGACG+CGG | + | 32495:2447-2466 | MS.gene61774:intergenic | 40.0% |
| !!! | AGTCTTGTTGGGACTGTTTT+TGG | - | 32495:1567-1586 | MS.gene61774:CDS | 40.0% |
| AAGTTTCTGCCGCGTCAAAA+TGG | - | 32495:2435-2454 | MS.gene61774:CDS | 45.0% | |
| AATCGGTAGGGTTGCTTCTT+TGG | + | 32495:1312-1331 | MS.gene61774:intergenic | 45.0% | |
| ACCTTAAGCGTGCTCAACAA+CGG | - | 32495:1339-1358 | MS.gene61774:CDS | 45.0% | |
| ACTGAGAATCCAGATCCAAC+AGG | - | 32495:2966-2985 | MS.gene61774:intron | 45.0% | |
| ATCGGTAGGGTTGCTTCTTT+GGG | + | 32495:1311-1330 | MS.gene61774:intergenic | 45.0% | |
| ATTCCTTCTTGTTGCCGGAA+CGG | - | 32495:2768-2787 | MS.gene61774:intron | 45.0% | |
| CAATTATCAAGCCTTCCGAG+AGG | + | 32495:2540-2559 | MS.gene61774:intergenic | 45.0% | |
| CCACAGAACTGGAAGATTAG+TGG | - | 32495:2894-2913 | MS.gene61774:intron | 45.0% | |
| CCACTAATCTTCCAGTTCTG+TGG | + | 32495:2897-2916 | MS.gene61774:intergenic | 45.0% | |
| CTAATCTTCCAGTTCTGTGG+TGG | + | 32495:2894-2913 | MS.gene61774:intergenic | 45.0% | |
| CTGAGAATCCAGATCCAACA+GGG | - | 32495:2967-2986 | MS.gene61774:intron | 45.0% | |
| CTGGTTTACTGCTGTGCAAA+TGG | - | 32495:3394-3413 | MS.gene61774:CDS | 45.0% | |
| CTGTGGAAAACCAGCGAAAA+CGG | + | 32495:1487-1506 | MS.gene61774:intergenic | 45.0% | |
| GAAAGTCTTCTTCAATGGGG+AGG | - | 32495:3661-3680 | MS.gene61774:CDS | 45.0% | |
| GAGGGATTGAACTACCTTGT+TGG | - | 32495:3512-3531 | MS.gene61774:CDS | 45.0% | |
| GGACGTTGAAGAAGCTACAA+TGG | + | 32495:1173-1192 | MS.gene61774:intergenic | 45.0% | |
| GTAACCAAAATCCTCTCGGA+AGG | - | 32495:2526-2545 | MS.gene61774:CDS | 45.0% | |
| GTCTCGATGAACTCAAGTCA+TGG | - | 32495:1361-1380 | MS.gene61774:CDS | 45.0% | |
| GTGTAACATTACAGCAGCCA+AGG | - | 32495:3031-3050 | MS.gene61774:intron | 45.0% | |
| GTTGGATCTGGATTCTCAGT+AGG | + | 32495:2966-2985 | MS.gene61774:intergenic | 45.0% | |
| TAACCCTCGTACAGATCCTA+GGG | - | 32495:3550-3569 | MS.gene61774:CDS | 45.0% | |
| TCAGTAGGACTAACACGAAC+CGG | + | 32495:2951-2970 | MS.gene61774:intergenic | 45.0% | |
| TGTCAAAAAACCACCGGTCA+AGG | - | 32495:1651-1670 | MS.gene61774:CDS | 45.0% | |
| TTGGCAGTTCGGTTCTCAAA+AGG | + | 32495:3212-3231 | MS.gene61774:intergenic | 45.0% | |
| TTGTTTAACGGCAACCCTGT+TGG | + | 32495:2984-3003 | MS.gene61774:intergenic | 45.0% | |
| ! | AACTGTAATGGCAAGTTGGC+AGG | - | 32495:3004-3023 | MS.gene61774:intron | 45.0% |
| ! | CTCTCGGAAGGCTTGATAAT+TGG | - | 32495:2538-2557 | MS.gene61774:CDS | 45.0% |
| ! | TCGGAAGGCTTGATAATTGG+AGG | - | 32495:2541-2560 | MS.gene61774:CDS | 45.0% |
| !! | GGAAAAGAAGGTACCTTGAC+CGG | + | 32495:1667-1686 | MS.gene61774:intergenic | 45.0% |
| !! | TTTTGAGAACCGAACTGCCA+AGG | - | 32495:3211-3230 | MS.gene61774:intron | 45.0% |
| !!! | TTTCGCTGGTTTTCCACAGA+CGG | - | 32495:1488-1507 | MS.gene61774:CDS | 45.0% |
| AACTGCCAAGGCTTATGCGT+GGG | - | 32495:3223-3242 | MS.gene61774:intron | 50.0% | |
| AAGACTGCTGTTGAAACGGC+GGG | - | 32495:1516-1535 | MS.gene61774:CDS | 50.0% | |
| ACCGTTGTTGAGCACGCTTA+AGG | + | 32495:1343-1362 | MS.gene61774:intergenic | 50.0% | |
| ACGCATAAGCCTTGGCAGTT+CGG | + | 32495:3223-3242 | MS.gene61774:intergenic | 50.0% | |
| AGCTTGATCGTCTTCGGCAA+CGG | + | 32495:1612-1631 | MS.gene61774:intergenic | 50.0% | |
| AGCTTTCACCACCACAGAAC+TGG | - | 32495:2883-2902 | MS.gene61774:intron | 50.0% | |
| AGGAGCTTATCCGTCTGTTC+TGG | - | 32495:2608-2627 | MS.gene61774:intron | 50.0% | |
| AGTTATCACCGCAAGGTGGT+GGG | + | 32495:3277-3296 | MS.gene61774:intergenic | 50.0% | |
| CAAATGGACAAAGCAGCTGC+AGG | - | 32495:3410-3429 | MS.gene61774:CDS | 50.0% | |
| CCTTCTGTACTTCCAACCAG+TGG | - | 32495:3695-3714 | MS.gene61774:CDS | 50.0% | |
| CCTTGCAAAACGTGTGCATG+TGG | - | 32495:3110-3129 | MS.gene61774:intron | 50.0% | |
| CTAACCCTCGTACAGATCCT+AGG | - | 32495:3549-3568 | MS.gene61774:CDS | 50.0% | |
| CTCGTCGTGCTGAAACTCAA+CGG | + | 32495:1394-1413 | MS.gene61774:intergenic | 50.0% | |
| GAAGACTGCTGTTGAAACGG+CGG | - | 32495:1515-1534 | MS.gene61774:CDS | 50.0% | |
| GAGGACCGCATTTGTAGTCA+GGG | + | 32495:2929-2948 | MS.gene61774:intergenic | 50.0% | |
| GCAAGCGCCATAGAAATAGG+TGG | - | 32495:3458-3477 | MS.gene61774:CDS | 50.0% | |
| GGGTGATTTGACTCAGATGC+AGG | - | 32495:1536-1555 | MS.gene61774:CDS | 50.0% | |
| GTAGGGTTGCTTCTTTGGGT+CGG | + | 32495:1307-1326 | MS.gene61774:intergenic | 50.0% | |
| TACTGGGCAGAGGTTACGAT+CGG | - | 32495:2504-2523 | MS.gene61774:CDS | 50.0% | |
| TCCAATGCTGTTCTCGCTGA+CGG | - | 32495:1429-1448 | MS.gene61774:CDS | 50.0% | |
| TGACTACAAATGCGGTCCTC+CGG | - | 32495:2929-2948 | MS.gene61774:intron | 50.0% | |
| TTCTTTGGGTCGGTGACGTT+AGG | + | 32495:1297-1316 | MS.gene61774:intergenic | 50.0% | |
| TTTGACTCAGATGCAGGCTC+AGG | - | 32495:1542-1561 | MS.gene61774:CDS | 50.0% | |
| ! | AGTGTTGTTCGTGGTGGTGA+CGG | - | 32495:3629-3648 | MS.gene61774:CDS | 50.0% |
| ! | CAAGCCTTCCGAGAGGATTT+TGG | + | 32495:2533-2552 | MS.gene61774:intergenic | 50.0% |
| ! | CCACATGCACACGTTTTGCA+AGG | + | 32495:3113-3132 | MS.gene61774:intergenic | 50.0% |
| ! | CCACTGGTTGGAAGTACAGA+AGG | + | 32495:3698-3717 | MS.gene61774:intergenic | 50.0% |
| ! | CCTGGAATCAGTGTTGTTCG+TGG | - | 32495:3620-3639 | MS.gene61774:CDS | 50.0% |
| ! | GGAATCAGTGTTGTTCGTGG+TGG | - | 32495:3623-3642 | MS.gene61774:CDS | 50.0% |
| ! | GTTCTGTGGTGGTGAAAGCT+CGG | + | 32495:2883-2902 | MS.gene61774:intergenic | 50.0% |
| !! | AAACGGTGCCGTTTCCAACT+AGG | + | 32495:1470-1489 | MS.gene61774:intergenic | 50.0% |
| !! | AAAGAAGGTACCTTGACCGG+TGG | + | 32495:1664-1683 | MS.gene61774:intergenic | 50.0% |
| !! | AACGGTGCCGTTTCCAACTA+GGG | + | 32495:1469-1488 | MS.gene61774:intergenic | 50.0% |
| !! | AGGCTCAGGTCAGTCTTGTT+GGG | - | 32495:1556-1575 | MS.gene61774:CDS | 50.0% |
| !! | CCACGAACAACACTGATTCC+AGG | + | 32495:3623-3642 | MS.gene61774:intergenic | 50.0% |
| !! | CCAGAAGCATCCAGAACAGA+CGG | + | 32495:2621-2640 | MS.gene61774:intergenic | 50.0% |
| AACCAGTGGTGCTTCCAGGA+AGG | - | 32495:3709-3728 | MS.gene61774:CDS | 55.0% | |
| AACGGCAACCCTGTTGGATC+TGG | + | 32495:2978-2997 | MS.gene61774:intergenic | 55.0% | |
| ACACCGCAGTTATCACCGCA+AGG | + | 32495:3284-3303 | MS.gene61774:intergenic | 55.0% | |
| ACCGTCAGCGAGAACAGCAT+TGG | + | 32495:1433-1452 | MS.gene61774:intergenic | 55.0% | |
| ACTGCGGTGTGAGCATCAAC+TGG | - | 32495:3294-3313 | MS.gene61774:CDS | 55.0% | |
| AGCTCGGATCGGTTAAGCAC+TGG | + | 32495:2867-2886 | MS.gene61774:intergenic | 55.0% | |
| ATTGGAGGTTGAGCTGGGAC+TGG | - | 32495:2556-2575 | MS.gene61774:CDS | 55.0% | |
| CAGTTATCACCGCAAGGTGG+TGG | + | 32495:3278-3297 | MS.gene61774:intergenic | 55.0% | |
| CCACCTTGCGGTGATAACTG+CGG | - | 32495:3278-3297 | MS.gene61774:CDS | 55.0% | |
| CTCCCTGCCCTAGTTGGAAA+CGG | - | 32495:1459-1478 | MS.gene61774:CDS | 55.0% | |
| GAACTGCCAAGGCTTATGCG+TGG | - | 32495:3222-3241 | MS.gene61774:intron | 55.0% | |
| GCACCCTAGGATCTGTACGA+GGG | + | 32495:3556-3575 | MS.gene61774:intergenic | 55.0% | |
| GCAGTCTTCAGATCCGTCTG+TGG | + | 32495:1504-1523 | MS.gene61774:intergenic | 55.0% | |
| GGAGGACCGCATTTGTAGTC+AGG | + | 32495:2930-2949 | MS.gene61774:intergenic | 55.0% | |
| GTACCGTTCCGGCAACAAGA+AGG | + | 32495:2774-2793 | MS.gene61774:intergenic | 55.0% | |
| GTACTACTGCACCTGCCATG+TGG | - | 32495:3162-3181 | MS.gene61774:intron | 55.0% | |
| GTAGGACTAACACGAACCGG+AGG | + | 32495:2948-2967 | MS.gene61774:intergenic | 55.0% | |
| GTCTCATACTCCTCCTCCGT+CGG | - | 32495:1258-1277 | MS.gene61774:CDS | 55.0% | |
| GTCTTCGGCAACGGAACATC+AGG | + | 32495:1603-1622 | MS.gene61774:intergenic | 55.0% | |
| GTTTCCAACTAGGGCAGGGA+GGG | + | 32495:1460-1479 | MS.gene61774:intergenic | 55.0% | |
| TTCCAACCAGTGGTGCTTCC+AGG | - | 32495:3705-3724 | MS.gene61774:CDS | 55.0% | |
| TTCGGCAACGGAACATCAGG+CGG | + | 32495:1600-1619 | MS.gene61774:intergenic | 55.0% | |
| TTTGGGTCGGTGACGTTAGG+CGG | + | 32495:1294-1313 | MS.gene61774:intergenic | 55.0% | |
| ! | AGGAACAAGGACAGCATCGG+AGG | + | 32495:3192-3211 | MS.gene61774:intergenic | 55.0% |
| ! | CAGGCTCAGGTCAGTCTTGT+TGG | - | 32495:1555-1574 | MS.gene61774:CDS | 55.0% |
| ! | CCGTCTGTTCTGGATGCTTC+TGG | - | 32495:2618-2637 | MS.gene61774:intron | 55.0% |
| ! | GGAACAAGGACAGCATCGGA+GGG | + | 32495:3191-3210 | MS.gene61774:intergenic | 55.0% |
| ! | GTACAGATCCTAGGGTGCCT+GGG | - | 32495:3558-3577 | MS.gene61774:CDS | 55.0% |
| ! | GTGGTGGTGAAAGCTCGGAT+CGG | + | 32495:2878-2897 | MS.gene61774:intergenic | 55.0% |
| ! | GTGTTGTTCGTGGTGGTGAC+GGG | - | 32495:3630-3649 | MS.gene61774:CDS | 55.0% |
| ! | TGCCGTTTCCAACTAGGGCA+GGG | + | 32495:1464-1483 | MS.gene61774:intergenic | 55.0% |
| !! | TCGGATCGGTTAAGCACTGG+CGG | + | 32495:2864-2883 | MS.gene61774:intergenic | 55.0% |
| !! | TGTTGTTTCCCAGGCACCCT+AGG | + | 32495:3569-3588 | MS.gene61774:intergenic | 55.0% |
| !! | TTCCTGGAAGCACCACTGGT+TGG | + | 32495:3710-3729 | MS.gene61774:intergenic | 55.0% |
| !! | TTCCTTCCTGGAAGCACCAC+TGG | + | 32495:3714-3733 | MS.gene61774:intergenic | 55.0% |
| ACGCCAAACCCACCACCTTG+CGG | - | 32495:3266-3285 | MS.gene61774:intron | 60.0% | |
| ACTACCCTCCCTGCCCTAGT+TGG | - | 32495:1453-1472 | MS.gene61774:CDS | 60.0% | |
| AGGCGGCAGTTGAACTCCGA+CGG | + | 32495:1277-1296 | MS.gene61774:intergenic | 60.0% | |
| CAGTTGAACTCCGACGGAGG+AGG | + | 32495:1271-1290 | MS.gene61774:intergenic | 60.0% | |
| CCGCAGTTATCACCGCAAGG+TGG | + | 32495:3281-3300 | MS.gene61774:intergenic | 60.0% | |
| CGTTTCCAACTAGGGCAGGG+AGG | + | 32495:1461-1480 | MS.gene61774:intergenic | 60.0% | |
| GGCACCCTAGGATCTGTACG+AGG | + | 32495:3557-3576 | MS.gene61774:intergenic | 60.0% | |
| TGCCAAGGCTTATGCGTGGG+CGG | - | 32495:3226-3245 | MS.gene61774:intron | 60.0% | |
| ! | AGCATCGGAGGGAAGCCACA+TGG | + | 32495:3180-3199 | MS.gene61774:intergenic | 60.0% |
| ! | CGTACAGATCCTAGGGTGCC+TGG | - | 32495:3557-3576 | MS.gene61774:CDS | 60.0% |
| ! | GGAAACGGCACCGTTTTCGC+TGG | - | 32495:1474-1493 | MS.gene61774:CDS | 60.0% |
| !! | CAAGGTGGTGGGTTTGGCGT+TGG | + | 32495:3266-3285 | MS.gene61774:intergenic | 60.0% |
| !! | GTGCCGTTTCCAACTAGGGC+AGG | + | 32495:1465-1484 | MS.gene61774:intergenic | 60.0% |
| !! | TCACCGCAAGGTGGTGGGTT+TGG | + | 32495:3272-3291 | MS.gene61774:intergenic | 60.0% |
| CCAAGGCTTATGCGTGGGCG+GGG | - | 32495:3228-3247 | MS.gene61774:intron | 65.0% | |
| CGGCAGTTGAACTCCGACGG+AGG | + | 32495:1274-1293 | MS.gene61774:intergenic | 65.0% | |
| GCCAAGGCTTATGCGTGGGC+GGG | - | 32495:3227-3246 | MS.gene61774:intron | 65.0% | |
| TCGGAGGGAAGCCACATGGC+AGG | + | 32495:3176-3195 | MS.gene61774:intergenic | 65.0% | |
| CCCCGCCCACGCATAAGCCT+TGG | + | 32495:3231-3250 | MS.gene61774:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32495 | gene | 1153 | 3790 | 1153 | ID=MS.gene61774 |
| 32495 | mRNA | 1153 | 3790 | 1153 | ID=MS.gene61774.t1;Parent=MS.gene61774 |
| 32495 | exon | 3271 | 3790 | 3271 | ID=MS.gene61774.t1.exon1;Parent=MS.gene61774.t1 |
| 32495 | CDS | 3271 | 3790 | 3271 | ID=cds.MS.gene61774.t1;Parent=MS.gene61774.t1 |
| 32495 | exon | 1153 | 2576 | 1153 | ID=MS.gene61774.t1.exon2;Parent=MS.gene61774.t1 |
| 32495 | CDS | 1153 | 2576 | 1153 | ID=cds.MS.gene61774.t1;Parent=MS.gene61774.t1 |
| Gene Sequence |
| Protein sequence |
